RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18049
(204 letters)
>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 103 bits (259), Expect = 1e-29
Identities = 36/84 (42%), Positives = 49/84 (58%)
Query: 25 SDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVG 84
S +S ++ F IGDRV +G + G + F GET FA G WAGV LD P G N+G
Sbjct: 12 SLASVPTADELFDFHIGDRVLIGNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYD 71
Query: 85 QARYFQCEPKHGIFSRLTRLTRTP 108
YF+C+ KHGIF+ +++ P
Sbjct: 72 GIAYFECKEKHGIFAPPQKISHIP 95
Score = 69.5 bits (170), Expect = 2e-16
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 134 RSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDE 193
+ ++ S + T + D +GDRV++ + G+LRFKG T FA+G W GVELD+
Sbjct: 5 QQVTESPSLASVPTADELFDFHIGDRVLI---GNVQPGILRFKGETSFAKGFWAGVELDK 61
Query: 194 PIGKNDGNLG 203
P G N+G
Sbjct: 62 PEGNNNGTYD 71
>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 97.4 bits (243), Expect = 1e-27
Identities = 44/70 (62%), Positives = 55/70 (78%)
Query: 38 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGI 97
F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V RYFQCEP GI
Sbjct: 1 FRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGI 60
Query: 98 FSRLTRLTRT 107
F+R ++LTR
Sbjct: 61 FTRPSKLTRK 70
Score = 61.6 bits (150), Expect = 8e-14
Identities = 27/46 (58%), Positives = 34/46 (73%), Gaps = 3/46 (6%)
Query: 155 RLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
R+G+RV V G+K G ++F G TQFA G+W G+ LDEPIGKNDG
Sbjct: 2 RVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDG 44
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 160
Score = 98.6 bits (245), Expect = 6e-27
Identities = 56/140 (40%), Positives = 78/140 (55%), Gaps = 10/140 (7%)
Query: 23 SISDSSQV--LTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKND 80
SIS+ S+ + + IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKND
Sbjct: 15 SISNLSEAGSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKND 74
Query: 81 GQVGQARYFQCEPKHGIFSRLTRLTRTPLDLPPPATPT------PGARGDGFISPTGSAR 134
G V RYFQC+PK+G+F+ + ++T+ PA A + + SA
Sbjct: 75 GAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTPAKAKANAVRRVMATTSASLKRSPSAS 134
Query: 135 SLS--FSTPGPGLSTPAKGG 152
SLS S S P++ G
Sbjct: 135 SLSSMSSVASSVSSRPSRTG 154
Score = 63.2 bits (153), Expect = 2e-13
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 127 ISPTGSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEW 186
IS S S S S ++++GDRV+V G+K GV+RF G T FA+GEW
Sbjct: 5 ISNLTKTASESISNLSEAGSIKKGERELKIGDRVLV---GGTKAGVVRFLGETDFAKGEW 61
Query: 187 CGVELDEPIGKNDGNLG 203
CGVELDEP+GKNDG +
Sbjct: 62 CGVELDEPLGKNDGAVA 78
>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 96.4 bits (240), Expect = 6e-27
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 23 SISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
+++ S+ E + G+ V VG K+G + ++G F G W GV LD P GKNDG
Sbjct: 3 ALASDSEEADEVPEWLREGEFVTVGAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGS 62
Query: 83 VGQARYFQCEPKHGIFSRLTRLTRT 107
+G +YF+C P +G+ R +R+ R
Sbjct: 63 IGGKQYFRCNPGYGLLVRPSRVRRA 87
Score = 62.5 bits (152), Expect = 6e-14
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
+R G+ V V KTGV+R+ G F +G W GVELD P GKNDG
Sbjct: 17 WLREGEFVTV---GAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDG 61
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 93.7 bits (233), Expect = 6e-26
Identities = 35/76 (46%), Positives = 49/76 (64%)
Query: 31 LTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQ 90
L +GDRV + G K+G + F G T+FA G W GV LD+P GKNDG VG RYF
Sbjct: 4 LMLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFI 63
Query: 91 CEPKHGIFSRLTRLTR 106
C PK G+F+ ++++++
Sbjct: 64 CPPKQGLFASVSKISK 79
Score = 64.0 bits (156), Expect = 1e-14
Identities = 33/51 (64%), Positives = 40/51 (78%), Gaps = 3/51 (5%)
Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
+RLGDRV++ G KTG LRF GTT+FA G+W GVELDEP GKNDG++G
Sbjct: 10 GLRLGDRVLL---DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVG 57
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 71
Score = 92.8 bits (231), Expect = 9e-26
Identities = 40/67 (59%), Positives = 54/67 (80%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V RYFQC+PK+G+F+
Sbjct: 3 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFA 62
Query: 100 RLTRLTR 106
+ ++T+
Sbjct: 63 PVHKVTK 69
Score = 63.2 bits (154), Expect = 2e-14
Identities = 31/50 (62%), Positives = 40/50 (80%), Gaps = 3/50 (6%)
Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
+++GDRV+V G+K GV+RF G T FA+GEWCGVELDEP+GKNDG +
Sbjct: 1 LKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVA 47
>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3
{Caenorhabditis elegans [TaxId: 6239]}
Length = 98
Score = 93.0 bits (231), Expect = 2e-25
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 25 SDSSQVLTEDTDSFIIGDRVYV----GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKND 80
++S ++ E + ++G+R V + G +A++G TKF G W GV D+PVGKND
Sbjct: 2 NESDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKND 61
Query: 81 GQVGQARYFQCEPKHGIFSRLTRLTRTPLDLPP 113
G V RYF C+PK+G F R + D P
Sbjct: 62 GSVAGVRYFDCDPKYGGFVRPVDVKV--GDFPE 92
Score = 67.5 bits (165), Expect = 9e-16
Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 153 DIRLGDRVIV-MSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
+I +G+R V + AQ ++ G + + G T+F +G W GV+ DEP+GKNDG
Sbjct: 14 NIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDG 62
>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 92.9 bits (231), Expect = 2e-25
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 23 SISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
S + + +GD+V V G K G + F G+T FAPG W G+ LD P GK+DG
Sbjct: 11 SSPSLGSLQQREGAKAEVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGS 70
Query: 83 VGQARYFQCEPKHGIFSRLTRLTRTPLDLPP 113
V RYF C P+HG+F+ +R+ R P
Sbjct: 71 VFGVRYFTCAPRHGVFAPASRIQR-IGSGPS 100
Score = 69.1 bits (169), Expect = 2e-16
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 131 GSARSLSFSTPGPGLST--PAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCG 188
GS+ S S P L + +G +GD+V+V G K G++RF G T FA G W G
Sbjct: 1 GSSGSSGKSPSSPSLGSLQQREGAKAEVGDQVLV---AGQKQGIVRFYGKTDFAPGYWYG 57
Query: 189 VELDEPIGKNDGNLG 203
+ELD+P GK+DG++
Sbjct: 58 IELDQPTGKHDGSVF 72
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 102
Score = 91.8 bits (228), Expect = 5e-25
Identities = 36/98 (36%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 23 SISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
+ ++ + +GDRV + G K G + F G T+FA G WAG+ LD+P GKN+G
Sbjct: 10 NSDHTTSRAMLTSLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGS 69
Query: 83 VGQARYFQCEPKHGIFSRLTRLTRTPLDLPPPATPTPG 120
VG+ +YF+C PK+GIF+ L+++++ + P+ G
Sbjct: 70 VGRVQYFKCAPKYGIFAPLSKISK-----LKDSGPSSG 102
Score = 62.2 bits (151), Expect = 1e-13
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
++LGDRV++ G K G LRF GTT+FA G+W G+ELDEP GKN+G
Sbjct: 24 GLKLGDRVVI---AGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNG 68
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 91.8 bits (228), Expect = 6e-25
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 23 SISDSSQVLTEDTDSFIIGDRVYVGGTKS--GRIAFIGETKFAPGDWAGVVLDD-PVGKN 79
S S + ++ +G V G I +IG+ AG+ L+D G
Sbjct: 3 SGSSGLAMPPGNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCT 62
Query: 80 DGQVGQARYFQCEPKHGIFSRLTRLTRTP-LDLPPPATPTPG 120
DG RYF C K +F +L P+ P+ G
Sbjct: 63 DGTFRGTRYFTCALKKALFVKLKSCRPDSRFASLQPSGPSSG 104
Score = 54.5 bits (131), Expect = 8e-11
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 131 GSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVE 190
GS+ S + P P + +G V GV+R+ G G+E
Sbjct: 1 GSSGSSGLAMP------PGNSHGLEVGSLAEV-KENPPFYGVIRWIGQPPGLNEVLAGLE 53
Query: 191 L-DEPIGKNDG 200
L DE G DG
Sbjct: 54 LEDECAGCTDG 64
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 91
Score = 87.1 bits (216), Expect = 2e-23
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 27 SSQVLTEDTDSFIIGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQ 85
SS E T G +V + + + ++G T FA G W G+ L GKNDG VG
Sbjct: 2 SSGSSGEGTVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGD 61
Query: 86 ARYFQCEPKHGIFSRLTRLTRTPLDLPPP 114
RYF C+P +G+ R +R+T + P
Sbjct: 62 KRYFTCKPNYGVLVRPSRVTYRGISGPSS 90
Score = 58.3 bits (141), Expect = 2e-12
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 146 STPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
S+ + G +V++ S ++ +R+ G T FA G W G+EL GKNDG
Sbjct: 5 SSGEGTVKLHEGSQVLLTS--SNEMATVRYVGPTDFASGIWLGLELRSAKGKNDG 57
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 85.5 bits (212), Expect = 6e-23
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 40 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF 98
+G RV V G G +A++G T FA G W GV+LD+ GKNDG V +YF C+ HGIF
Sbjct: 4 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 63
Query: 99 SRLTRLT 105
R +++
Sbjct: 64 VRQSQIQ 70
Score = 58.2 bits (141), Expect = 2e-12
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
+R+G RV V G + + G T FA G+W GV LDE GKNDG +
Sbjct: 2 LRVGSRVEV--IGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQ 49
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 84.9 bits (210), Expect = 3e-22
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 25 SDSSQVLTEDT---DSFIIGDRVYV----GGTKSGRIAFIGETKFAPGDWAGVVLDDPVG 77
++++Q L+E+ + +G R V + G + ++G T F PG W GV D+P+G
Sbjct: 17 AEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLG 76
Query: 78 KNDGQVGQARYFQCEPKHGIFSRLTRLTRTPLDLPP 113
KNDG V RYF+C+ K+G F + + +T D P
Sbjct: 77 KNDGSVNGKRYFECQAKYGAFVKPSAVTV--GDSGP 110
Score = 60.7 bits (147), Expect = 5e-13
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 148 PAKGGDIRLGDRVIVMSA-QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
A+ I +G R V + + G + + G T F G W GV DEP+GKNDG
Sbjct: 27 KAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDG 80
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 69.1 bits (169), Expect = 3e-16
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 40 IGDRVYV-----GGTKSGRIAFIGETKFAP---GDWAGVVLDD---PVGKNDGQVGQARY 88
+G V V G + F G G + GV L + G DG +
Sbjct: 10 VGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQL 69
Query: 89 FQCEPKHGIFSRLTRLTRTPLDLPPPA 115
FQC+ G+F L +L ++ P +
Sbjct: 70 FQCDEDCGVFVALDKLEL--IESGPSS 94
Score = 44.5 bits (105), Expect = 4e-07
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 153 DIRLGDRVIVM--SAQGSKTGVLRFKGTTQFAQ---GEWCGVELDE---PIGKNDG 200
I +G V V S + GV+RF+G + G + GVEL E G DG
Sbjct: 7 GIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDG 62
>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 68.7 bits (168), Expect = 3e-16
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 37 SFIIGDRVYV---GGTKSGRIAFIG--ETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQC 91
I RV + +SG + F K + G + GV +D+P+G DG+ +
Sbjct: 9 PLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSF 68
Query: 92 E-PKHGIFSRLTRLTRTP 108
+ I + +
Sbjct: 69 ACVESTILLHINDIIPES 86
Score = 62.5 bits (152), Expect = 6e-14
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 146 STPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGT--TQFAQGEWCGVELDEPIGKNDG 200
S+ + G + + RV + + ++G + F + + G + GV++D PIG DG
Sbjct: 2 SSGSSGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDG 58
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 219
Score = 26.3 bits (57), Expect = 2.1
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 17 QNCFLVSISDSSQVLTEDTDSFIIG-DRVYVGGTKSGRIAFIGETKF 62
Q ++ + ++D DS + G R+ T +G+ G+ +
Sbjct: 155 QAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVY 201
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 25.9 bits (57), Expect = 3.1
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 34 DTDSFIIGDRVYVGGTKSGRIAFI 57
++ DRVY+G + + I
Sbjct: 45 KGKQPLVMDRVYIGKGERDVVYKI 68
>d1zx8a1 b.62.1.3 (A:1-124) Hypothetical protein TM1367 {Thermotoga
maritima [TaxId: 2336]}
Length = 124
Score = 24.8 bits (54), Expect = 5.8
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 106 RTPLDLPPPATPT-PGARGDGFISPTGSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVM 163
TP+++ P GD P G A L F TP I+ V V+
Sbjct: 46 STPVNVQKMENPREVVEIGDVGYWPPGKALCLFFG------KTPMSDDKIQPASAVNVI 98
>d1tx9a1 a.84.1.1 (A:7-144) Scaffolding protein gpD of
bacteriophage procapsid {Bacteriophage phi-X174 [TaxId:
10847]}
Length = 138
Score = 24.2 bits (52), Expect = 7.6
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
Query: 31 LTEDTDSFIIGDRVYVGGTKS-----------GRIAFIGETKF-APGDWAGVVL 72
LTED F+ ++V++ +S G + F+G +F AP ++ V+
Sbjct: 23 LTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVI 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.137 0.416
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 754,557
Number of extensions: 34637
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 36
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)