BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18052
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G+K GV+RF G T FA+GEWCGVELDEP+GKNDG
Sbjct: 49 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDG 82
>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2
Length = 90
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G+K GV+RF G T FA+GEWCGVELDEP+GKNDG + F
Sbjct: 12 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 53
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex
With Tubulin Tail
Length = 98
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G+K GV+RF G T FA+GEWCGVELDEP+GKNDG + F
Sbjct: 20 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 61
>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 84
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 32/38 (84%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG +
Sbjct: 18 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAG 55
>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170-Related Protein Clipr59
Length = 95
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLC 50
G KTG LRF GTT+FA G+W GVELDEP GKNDG S G ++C
Sbjct: 26 DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDG--SVGGVRYFIC 70
>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 102
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCA 51
G K G LRF GTT+FA G+W G+ELDEP GKN+G S G + CA
Sbjct: 35 GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNG--SVGRVQYFKCA 79
>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 141
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 27/35 (77%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G+K G ++F G TQFA G+W G+ LDEPIGKNDG
Sbjct: 74 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDG 108
>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1
Length = 86
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
G+K G ++F G TQFA G+W G+ LDEPIGKNDG +
Sbjct: 12 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAG 50
>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
Clip- 170RESTIN
Length = 84
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
G+K G ++F G TQFA G+W G+ LDEPIGKNDG +
Sbjct: 17 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAG 55
>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|B Chain B, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|C Chain C, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|D Chain D, Structure Of The Slain2c-Clipcg1 Complex
Length = 72
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 3 AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
G+K G ++F G TQFA G+W G+ LDEPIGKNDG +
Sbjct: 11 VNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAG 50
>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 74
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 3 AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
G+K G ++F G TQFA G+W G+ LDEPIGKNDG +
Sbjct: 12 VNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAG 51
>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 95
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G K GV+++ G TQFA G+W GV LD+P+GKNDG
Sbjct: 28 NGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDG 62
>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Centrosome-Associated Protein Cap350
Length = 122
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 7 KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
+ G+LRFKG T FA+G W GVELD+P G N+G +
Sbjct: 44 QPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDG 79
>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse
Clip170-Related 59kda Protein Clipr-59
Length = 102
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G K G++RF G T FA G W G+ELD+P GK+DG
Sbjct: 36 GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDG 69
>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human
Restin- Like Protein 2 Reveals A Swapped-Dimer
Length = 96
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G + G +RF GTT FA G W G+EL++P GKNDG
Sbjct: 21 GQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDG 54
>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Kinesin- Like Protein Kif13b
Length = 100
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 23/36 (63%)
Query: 7 KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
KTGV+R+ G F +G W GVELD P GKNDG
Sbjct: 36 KTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGG 71
>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 95
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 1 MSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
+ AQ ++ G + + G T+F +G W GV+ DEP+GKNDG + F
Sbjct: 22 VGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYF 67
>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 98
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 1 MSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
+ AQ ++ G + + G T+F +G W GV+ DEP+GKNDG +
Sbjct: 25 VGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAG 66
>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse
Tubulin Specific Chaperone B
Length = 113
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 7 KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
+ G + + G T F G W GV DEP+GKNDG + F
Sbjct: 49 RRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYF 88
>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Dynactin 1
Length = 112
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G + + G T FA G+W GV LDE GKNDG
Sbjct: 49 GTVAYVGATLFATGKWVGVILDEAKGKNDG 78
>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed
With The Cap-Gly Domain Of P150glued
pdb|2HQH|A Chain A, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|B Chain B, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|C Chain C, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|D Chain D, Crystal Structure Of P150glued And Clip-170
Length = 93
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G + + G T FA G+W GV LDE GKNDG
Sbjct: 28 GTVAYVGATLFATGKWVGVILDEAKGKNDG 57
>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKN|B Chain B, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKQ|B Chain B, Crystal Structure Of The C-Terminal Domain Of Human Eb1
In Complex With The Cap-Gly Domain Of Human Dynactin-1
(P150-Glued)
pdb|3E2U|A Chain A, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|B Chain B, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|C Chain C, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|D Chain D, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G + + G T FA G+W GV LDE GKNDG
Sbjct: 28 GTVAYVGATLFATGKWVGVILDEAKGKNDG 57
>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain
Of P150glued
pdb|3TQ7|Q Chain Q, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain
Of P150glued
Length = 71
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G + + G T FA G+W GV LDE GKNDG
Sbjct: 16 GTVAYVGMTLFATGKWVGVILDEAKGKNDG 45
>pdb|4B6M|A Chain A, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
pdb|4B6M|B Chain B, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
Length = 84
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 5 GSKTGVLRFKG-TTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G + G +RF G G W GVE DEP+GK DG F
Sbjct: 17 GDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVF 59
>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL3|B Chain B, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL5|C Chain C, Crystal Structure Of The C-Terminal Domain Of Human Eb1
In Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|2HL5|D Chain D, Crystal Structure Of The C-Terminal Domain Of Human Eb1
In Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G + + G T FA G+W GV LDE GKNDG
Sbjct: 28 GTVAYVGMTLFATGKWVGVILDEAKGKNDG 57
>pdb|1WHK|A Chain A, Solution Structure Of The 3rd Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 91
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 11 LRFKGTTQFAQGEWCGVELDEPIGKNDG 38
+R+ G T FA G W G+EL GKNDG
Sbjct: 30 VRYVGPTDFASGIWLGLELRSAKGKNDG 57
>pdb|2KJL|A Chain A, Nmr Structures Of A Designed Cyanovirin-N Homolog
Lectin; Lkamg
pdb|3HNU|X Chain X, Crystal Structure Of A Designed Cyanovirin-N Homolog
Lectin; Lkamg In P21 Space Group
pdb|3HNX|A Chain A, Crystal Structure Of A Designed Cyanovirin-N Homolog
Lectin; Lkamg In P212121 Space Group
pdb|3HP8|A Chain A, Crystal Structure Of A Designed Cyanovirin-N Homolog
Lectin; Lkamg, Bound To Sucrose
pdb|3HP8|B Chain B, Crystal Structure Of A Designed Cyanovirin-N Homolog
Lectin; Lkamg, Bound To Sucrose
Length = 110
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 3 AQGSKTGVLRFKGTT-----QFAQGEWCGVELDEP--IGKNDGKFS-AGSTFIWLCALIL 54
A S+ VL G T + A G W ELD IG NDG F G F I
Sbjct: 7 ADSSRNAVLTNGGRTLRAECRNADGNWVTSELDLDTIIGNNDGHFQWGGQNFTETAEDIR 66
Query: 55 GYHQSHEAKSP 65
+ + A+ P
Sbjct: 67 FHPKEGAAEQP 77
>pdb|2JZL|A Chain A, Structure Of Nccvnh (N. Crassa Cvnh) (Casp Target)
Length = 114
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 22 GEWCGV--ELDEPIGKNDGKFS-AGSTFIWLCALILGYHQSHEAKSP 65
GEW ELD+ IG NDG F G F I + + A+ P
Sbjct: 33 GEWNDASYELDQIIGNNDGHFQWGGQNFTETAEDIRFHPKEGAAEQP 79
>pdb|4EX4|A Chain A, The Structure Of Glcb From Mycobacterium Leprae
pdb|4EX4|B Chain B, The Structure Of Glcb From Mycobacterium Leprae
Length = 735
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 13 FKGTTQFAQGEWCGVEL-DEPIGKNDGKFSAGSTFIWL 49
FKG Q +G W EL + + + G+ AG+T W+
Sbjct: 514 FKGKAQIGKGMWAMTELMADMVEQKIGQPKAGATTAWV 551
>pdb|1WHM|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Cylindromatosis Tumor Suppressor Cyld
Length = 92
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 22 GEWCGVELDEPIGKNDGKFSAGSTFIWLCA 51
G + GV++D PIG DG+F + LC+
Sbjct: 42 GYFVGVDMDNPIGNWDGRFDG----VQLCS 67
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 57 HQSHEAKSPYEESLTSFICKVCTWFCISRV 86
+Q HEA + +S SF TWF +SR+
Sbjct: 13 NQIHEADTTENQSGVSFDKTSATWFALSRI 42
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 2 SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF----SAGSTFIWLCALILGYH 57
S Q G+ F+ QF GEW V +D+ + DGK SA W L Y
Sbjct: 130 SFQEGYAGIFHFQ-LWQF--GEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYA 186
Query: 58 Q---SHEAKSP--YEESLTSFICKVCTWFCISR 85
+ S+EA S E+ F V W+ + +
Sbjct: 187 KVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQK 219
>pdb|1H76|A Chain A, The Crystal Structure Of Diferric Porcine Serum
Transferrin
Length = 696
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 34 GKNDGKFSAGSTFIWLCALILGYHQSHEAKSPYEESLTSFICKVC 78
GK G + W+ + L Y Q E + P E+++ SF C
Sbjct: 113 GKRSCHTGLGRSAGWIIPMGLLYDQLPEPRKPIEKAVASFFSSSC 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,056,578
Number of Sequences: 62578
Number of extensions: 109705
Number of successful extensions: 201
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 38
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)