BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18052
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O55156|CLIP2_RAT CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus
GN=Clip2 PE=1 SV=1
Length = 1046
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/42 (64%), Positives = 33/42 (78%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG + F
Sbjct: 230 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 271
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G K GV+++ G TQFA G+W GV LD+P+GKNDG
Sbjct: 90 GVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDG 123
>sp|Q9Z0H8|CLIP2_MOUSE CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2
PE=1 SV=2
Length = 1047
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/42 (64%), Positives = 33/42 (78%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG + F
Sbjct: 230 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 271
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G K GV+++ G TQFA G+W GV LD+P+GKNDG
Sbjct: 90 GVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDG 123
>sp|Q9UDT6|CLIP2_HUMAN CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2
PE=1 SV=1
Length = 1046
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/42 (64%), Positives = 33/42 (78%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG + F
Sbjct: 229 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 270
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G K GV+++ G TQFA G+W GV LD+P+GKNDG
Sbjct: 89 GVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDG 122
>sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1
PE=1 SV=1
Length = 1391
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G+K GV+RF G T FA+GEWCGVELDEP+GKNDG + F
Sbjct: 221 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 262
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G+K G ++F G TQFA G+W G+ LDEPIGKNDG + F
Sbjct: 68 GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYF 109
>sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1
PE=1 SV=2
Length = 1438
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G+K GV+RF G T FA+GEWCGVELDEP+GKNDG + F
Sbjct: 222 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 263
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G+K G ++F G TQFA G+W G+ LDEPIGKNDG + F
Sbjct: 68 GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYF 109
>sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus
GN=CLIP1 PE=2 SV=1
Length = 1433
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G+K GV+RF G T FA+GEWCGVELDEP+GKNDG + F
Sbjct: 225 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 266
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G+K G ++F G TQFA G+W G+ LDEPIGKNDG + F
Sbjct: 69 GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYF 110
>sp|Q5R686|CLIP3_PONAB CAP-Gly domain-containing linker protein 3 OS=Pongo abelii GN=CLIP3
PE=2 SV=1
Length = 547
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLC 50
G KTG LRF GTT+FA G+W GVELDEP GKNDG S G ++C
Sbjct: 304 GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDG--SVGGVRYFIC 347
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G K G++RF G T FA G W G+ELD+P GK+DG
Sbjct: 426 GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDG 459
>sp|B9EHT4|CLIP3_MOUSE CAP-Gly domain-containing linker protein 3 OS=Mus musculus GN=Clip3
PE=1 SV=1
Length = 547
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLC 50
G KTG LRF GTT+FA G+W GVELDEP GKNDG S G ++C
Sbjct: 304 GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDG--SVGGVRYFIC 347
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G K G++RF G T FA G W G+ELD+P GK+DG
Sbjct: 426 GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDG 459
>sp|Q96DZ5|CLIP3_HUMAN CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3
PE=1 SV=3
Length = 547
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLC 50
G KTG LRF GTT+FA G+W GVELDEP GKNDG S G ++C
Sbjct: 304 GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDG--SVGGVRYFIC 347
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G K G++RF G T FA G W G+ELD+P GK+DG
Sbjct: 426 GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDG 459
>sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1
Length = 1690
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/37 (70%), Positives = 29/37 (78%)
Query: 2 SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
S GS+ G+LR+ G TQFA G WCGVELDEP GKNDG
Sbjct: 247 SGFGSRPGILRYLGETQFAPGNWCGVELDEPSGKNDG 283
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 26/42 (61%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G++ G + F G T FA GEW GV LDEP GKNDG S F
Sbjct: 133 GTRPGQIAFIGDTHFAAGEWAGVVLDEPNGKNDGCVSGKRYF 174
>sp|Q8N3C7|CLIP4_HUMAN CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4
PE=1 SV=1
Length = 705
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCA 51
G K G LRF GTT+FA G+W G+ELDEP GKN+G S G + CA
Sbjct: 293 GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNG--SVGKVQYFKCA 337
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCA 51
G + G +RF GTT FA G W G+EL++P GKNDG S G + C+
Sbjct: 495 GQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDG--SVGGVQYFSCS 539
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 6 SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLC 50
++ G +R+ G T FA G W G+EL GKNDG S G + C
Sbjct: 635 NEMGTVRYVGPTDFASGIWLGLELRSAKGKNDG--SVGDKRYFTC 677
>sp|Q5U243|CLIP3_XENLA CAP-Gly domain-containing linker protein 3 OS=Xenopus laevis
GN=clip3 PE=2 SV=1
Length = 534
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLC 50
K G LRF GTT+FA G+W GVELDEP GKNDG S G ++C
Sbjct: 294 AEKAGTLRFCGTTEFASGQWVGVELDEPDGKNDG--SVGGIRYFIC 337
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G K G++RF G T FA G W G+EL++P GK+DG
Sbjct: 413 GQKQGIVRFYGKTDFAPGYWFGIELEKPTGKHDG 446
>sp|Q66HD5|CLIP4_RAT CAP-Gly domain-containing linker protein 4 OS=Rattus norvegicus
GN=Clip4 PE=2 SV=1
Length = 599
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCA 51
G K G LRF GTT+FA G+W G+ELDEP GKN+G S G + CA
Sbjct: 293 GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNG--SVGRVQYFKCA 337
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCA 51
G + G ++F GTT FA G W G+EL++P GKNDG S G + C+
Sbjct: 495 GQRVGTIKFFGTTNFAPGYWYGIELEKPHGKNDG--SVGGVQYFSCS 539
>sp|Q8CI96|CLIP4_MOUSE CAP-Gly domain-containing linker protein 4 OS=Mus musculus GN=Clip4
PE=1 SV=1
Length = 704
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCA 51
G K G LRF GTT+FA G+W G+ELDEP GKN+G S G + CA
Sbjct: 293 GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNG--SVGRVQYFKCA 337
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCA 51
G + G ++F GTT FA G W G+EL++P GKNDG S G + C+
Sbjct: 494 GQRVGTIKFFGTTNFAPGYWYGIELEKPHGKNDG--SVGGVQYFSCS 538
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 6 SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
++ +R+ G T FA G W G+EL GKNDG
Sbjct: 634 NEMATVRYVGPTDFASGIWLGLELRSAKGKNDG 666
>sp|Q5VT06|CE350_HUMAN Centrosome-associated protein 350 OS=Homo sapiens GN=CEP350 PE=1 SV=1
Length = 3117
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 7 KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
+ G+LRFKG T FA+G W GVELD+P G N+G + + F
Sbjct: 2509 QPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYF 2548
>sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ro-3 PE=3 SV=3
Length = 1367
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 3 AQGS-KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
A GS +T +R+ G T FA G W G+ELDEP GKNDG F
Sbjct: 15 ADGSGRTAFVRYVGETAFAPGTWVGIELDEPSGKNDGSVQGERYF 59
>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1
Length = 1826
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 7 KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
KTGV+R+ G F +G W GVELD P GKNDG F
Sbjct: 1713 KTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYF 1752
>sp|P33420|NIP80_YEAST Protein NIP100 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NIP100 PE=1 SV=2
Length = 868
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 25/30 (83%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G ++F G TQFA+G W G+ELD+P+GKNDG
Sbjct: 28 GRVKFIGETQFAKGIWYGIELDKPLGKNDG 57
>sp|Q20728|TBCB_CAEEL Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=F53F4.3
PE=1 SV=1
Length = 229
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 1 MSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
+ AQ ++ G + + G T+F +G W GV+ DEP+GKNDG
Sbjct: 156 VGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDG 193
>sp|Q99426|TBCB_HUMAN Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2
Length = 244
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 2 SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
+ Q + G + + G T F G W GV DEP+GKNDG + F
Sbjct: 170 AGQSPRRGTVMYVGLTDFKPGYWIGVRYDEPLGKNDGSVNGKRYF 214
>sp|Q54Z01|TBCB_DICDI Tubulin-specific chaperone B OS=Dictyostelium discoideum GN=tbcb
PE=3 SV=1
Length = 270
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 7 KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
+ G +++ GT +F+ G W GVELD P+GKNDG F
Sbjct: 206 RLGKVQYVGTVEFSSGVWIGVELDLPLGKNDGSVKGKQYF 245
>sp|Q5E951|TBCB_BOVIN Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1
Length = 244
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 3 AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
Q + G + + G T F G W G+ DEP+GKNDG + F
Sbjct: 171 GQPPRRGTVMYVGLTDFKPGYWIGIRYDEPLGKNDGSVNGKRYF 214
>sp|Q9D1E6|TBCB_MOUSE Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2
Length = 244
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 7 KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
+ G + + G T F G W GV DEP+GKNDG + F
Sbjct: 175 RRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYF 214
>sp|P13496|DCTN1_DROME Dynactin subunit 1 OS=Drosophila melanogaster GN=Gl PE=1 SV=2
Length = 1265
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G + + G T FA G+W GV LDEP GKN G F
Sbjct: 21 GTVAYVGMTSFAVGKWVGVVLDEPKGKNSGSIKGQQYF 58
>sp|P34531|YM92_CAEEL Uncharacterized protein M01A8.2 OS=Caenorhabditis elegans
GN=M01A8.2 PE=4 SV=4
Length = 937
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFI 47
G LR+ G G +CG+EL EP GK+DG F S FI
Sbjct: 33 GFLRYVGPIHGKDGMFCGIELLEPNGKHDGTFQGVSYFI 71
>sp|O42667|SSM4_SCHPO Microtubule-associated protein ssm4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssm4 PE=1 SV=1
Length = 670
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G++RF G+T F G W GVEL GKNDG F
Sbjct: 17 GIVRFAGSTDFESGIWLGVELLNGKGKNDGSVKGKRYF 54
>sp|Q10235|ALP11_SCHPO Cell polarity protein alp11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=alp11 PE=1 SV=1
Length = 234
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 3 AQGSKTGVLRFKGTTQFAQGE--WCGVELDEPIGKNDGKFSAGSTF 46
A G + G +R+ G + W GVE DEP+GKNDG S F
Sbjct: 160 AAGERYGTIRYIGLVPEINNDNLWVGVEFDEPVGKNDGTVSGKRYF 205
>sp|P28023|DCTN1_RAT Dynactin subunit 1 OS=Rattus norvegicus GN=Dctn1 PE=2 SV=2
Length = 1280
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G + + G T FA G+W GV LDE GKNDG F
Sbjct: 42 GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYF 79
>sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn1 PE=1 SV=3
Length = 1281
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G + + G T FA G+W GV LDE GKNDG F
Sbjct: 42 GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYF 79
>sp|Q14203|DCTN1_HUMAN Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3
Length = 1278
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G + + G T FA G+W GV LDE GKNDG F
Sbjct: 42 GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYF 79
>sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dctn1 PE=2 SV=1
Length = 1232
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
G + + G T FA G+W GV LD+ GKNDG
Sbjct: 25 GTVAYVGATLFATGKWVGVILDDSKGKNDG 54
>sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=2 SV=2
Length = 1224
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G + + G T A G+W GV LDE GKNDG F
Sbjct: 43 GTVAYVGATLXATGKWVGVILDEAKGKNDGTVQGRKYF 80
>sp|P53904|TBCB_YEAST Tubulin-specific chaperone B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ALF1 PE=1 SV=1
Length = 254
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 7 KTGVLRFKGTTQF-AQGEWCGVELDEPIGKNDGKFSAGSTF 46
+ +LR+ G G WCGVE E GKNDG+ + + F
Sbjct: 173 REAILRYVGPLPLDVMGTWCGVEFPEAAGKNDGRINGVTLF 213
>sp|P11709|BIK1_YEAST Nuclear fusion protein BIK1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BIK1 PE=1 SV=1
Length = 440
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
G L++ G G + GV+L IGKNDG F F
Sbjct: 20 GQLKYVGPVDTKAGMFAGVDLLANIGKNDGSFMGKKYF 57
>sp|Q55CN0|TBCE_DICDI Tubulin-specific chaperone E OS=Dictyostelium discoideum GN=tbce
PE=3 SV=1
Length = 525
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 9 GVLRFKGTTQFAQGEWCGVELDEPI-GKNDGKFSAGSTF 46
G +R++G +G W G+E D+P GK+ G F
Sbjct: 27 GTIRYQGKVDGFEGNWYGIEWDDPKRGKHQGTVKGKQYF 65
>sp|Q8LPK5|CESA8_ARATH Cellulose synthase A catalytic subunit 8 [UDP-forming]
OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1
Length = 985
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 49 LCALILGYHQSHEAKSPYEESLTSFICKVCTWFCISRVQD 88
+ AL Y +H S Y LTS IC++ WF +S V D
Sbjct: 193 ILALFFNYRITHPVDSAYGLWLTSVICEI--WFAVSWVLD 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,891,990
Number of Sequences: 539616
Number of extensions: 1327740
Number of successful extensions: 1935
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1885
Number of HSP's gapped (non-prelim): 52
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)