Query psy18052
Match_columns 98
No_of_seqs 118 out of 835
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 21:16:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01302 CAP_GLY: CAP-Gly doma 99.9 2.8E-23 6.1E-28 133.0 7.4 57 3-61 9-68 (69)
2 KOG3206|consensus 99.8 4.5E-20 9.7E-25 141.2 5.8 64 3-68 161-228 (234)
3 COG5244 NIP100 Dynactin comple 99.7 2.7E-17 5.8E-22 138.1 5.2 64 5-70 13-80 (669)
4 KOG0971|consensus 99.6 1.9E-15 4.2E-20 133.4 5.0 56 4-61 16-73 (1243)
5 KOG4568|consensus 99.5 2.8E-14 6.1E-19 122.7 3.2 53 3-57 26-78 (664)
6 KOG3207|consensus 99.4 1.6E-13 3.5E-18 114.4 6.1 56 5-62 12-71 (505)
7 KOG0241|consensus 98.8 1.5E-09 3.3E-14 97.6 2.2 61 6-72 1642-1704(1714)
8 KOG4568|consensus 98.8 9.5E-10 2.1E-14 95.0 0.6 55 3-59 163-218 (664)
9 KOG3556|consensus 98.6 3.5E-08 7.5E-13 84.5 4.7 54 5-60 251-310 (724)
10 PTZ00243 ABC transporter; Prov 93.4 0.073 1.6E-06 50.2 3.4 44 3-46 135-194 (1560)
11 PRK10708 hypothetical protein; 38.1 1.1E+02 0.0023 19.5 5.0 43 4-57 14-57 (62)
12 PF10781 DSRB: Dextransucrase 34.1 1.3E+02 0.0027 19.2 4.9 43 4-57 14-57 (62)
13 COG3350 Uncharacterized conser 30.6 23 0.00049 22.0 0.6 30 23-54 6-35 (53)
14 smart00449 SPRY Domain in SPla 30.4 96 0.0021 19.9 3.7 36 21-58 65-105 (122)
No 1
>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain. The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....
Probab=99.89 E-value=2.8e-23 Score=133.00 Aligned_cols=57 Identities=40% Similarity=0.735 Sum_probs=50.7
Q ss_pred CCCCceEEEEEEeecC-CCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cccc
Q psy18052 3 AQGSKTGVLRFKGTTQ-FAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHE 61 (98)
Q Consensus 3 ~~g~~~GtVRyiG~~~-~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v 61 (98)
.+...+|+|||+|+++ ..++.|+|||||+|.|+|||+++|+||| +|+|+||+| |++|
T Consensus 9 ~~~~~~G~vryiG~~~~~~~g~~vGVEld~~~G~~dGt~~G~rYF--~c~~~~G~Fv~~~~v 68 (69)
T PF01302_consen 9 DPGGRRGTVRYIGPVPGFKSGIWVGVELDEPRGKNDGTVKGKRYF--ECPPNHGIFVRPSKV 68 (69)
T ss_dssp STTTEEEEEEEEEE-SSSSSSEEEEEEESSSTSSBSSEETTEESS---SSTTTEEEEEGGGE
T ss_pred eCCCCEEEEEEEeeCCCCCCCEEEEEEEcCCCCCCCcEECCEEEe--eeCCCCEEEecHHHC
Confidence 4678999999999999 7788999999999999999999999999 999999999 4555
No 2
>KOG3206|consensus
Probab=99.80 E-value=4.5e-20 Score=141.17 Aligned_cols=64 Identities=38% Similarity=0.686 Sum_probs=57.7
Q ss_pred CCCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccc--cccCCCcc
Q psy18052 3 AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSH--EAKSPYEE 68 (98)
Q Consensus 3 ~~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~--v~~~p~~~ 68 (98)
+..+++|+|||+|++++.+|.|+|||.|||.|||||+++|+||| +|+|+||.| |.. |...|+++
T Consensus 161 G~~~Rrg~vrYvG~~~~k~G~wiGVeydEplGKnDGsv~G~ryF--~c~p~yGgfVrP~~V~VgdfpeeD 228 (234)
T KOG3206|consen 161 GQAPRRGTVRYVGPLEFKPGYWIGVEYDEPLGKNDGSVNGKRYF--ECAPKYGGFVRPRAVTVGDFPEED 228 (234)
T ss_pred CCCCcceEEEEecccCCCCceEEEEecCCccccCCCcccceEee--ecCCccCCccccceeeecCCChhh
Confidence 34459999999999999999999999999999999999999999 999999999 876 45677763
No 3
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=99.68 E-value=2.7e-17 Score=138.14 Aligned_cols=64 Identities=36% Similarity=0.634 Sum_probs=56.5
Q ss_pred CCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cc--ccccCCCcccc
Q psy18052 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QS--HEAKSPYEESL 70 (98)
Q Consensus 5 g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~--~v~~~p~~~~~ 70 (98)
++..|+|||+|.+.|..|+|+|||||+|.|+|||+++|+||| .|..+||+| |- +|-+.|.+..+
T Consensus 13 ~~~~g~VrfiG~t~f~~GiW~GlELd~p~GkNDGSvnGvRYF--~Ckk~~giFir~~~~~ll~~~a~~e~ 80 (669)
T COG5244 13 GDKFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYF--HCKKRHGIFIRPDDDSLLNGNAAYEK 80 (669)
T ss_pred ccccceEEEeeecccccceEEEEEecCCCCCCCCccCceEEE--EecCCcceEEecCchhhhcchHHHHH
Confidence 567899999999999999999999999999999999999999 999999999 53 36666666433
No 4
>KOG0971|consensus
Probab=99.57 E-value=1.9e-15 Score=133.37 Aligned_cols=56 Identities=39% Similarity=0.669 Sum_probs=52.2
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cccc
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHE 61 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v 61 (98)
.++..|+|.|+|.+.|+.|.|+||-||+|.||||||++|++|| +|++|||+| ++.|
T Consensus 16 gknl~G~VayvG~T~FA~G~WvGVvLDep~GKNnGsVqg~qYF--~Cd~ncG~FVr~sq~ 73 (1243)
T KOG0971|consen 16 GKNLQGTVAYVGQTQFAEGKWVGVVLDEPKGKNNGSVQGVQYF--ECDENCGVFVRSSQV 73 (1243)
T ss_pred cCCccceEEEecccccccCceEEEEeccccCCCCCcccceeeE--ecCCCcceEeehhhh
Confidence 4677899999999999999999999999999999999999999 999999999 5443
No 5
>KOG4568|consensus
Probab=99.46 E-value=2.8e-14 Score=122.72 Aligned_cols=53 Identities=42% Similarity=0.745 Sum_probs=50.7
Q ss_pred CCCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee
Q psy18052 3 AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH 57 (98)
Q Consensus 3 ~~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF 57 (98)
..+...|.|||+|++++.+|+|+||+||+|.|||||+++|+||| .|.+.+|+|
T Consensus 26 v~~~~~G~v~y~G~t~f~~G~w~GveL~~p~GKNdGsv~G~rYF--~ce~~kgif 78 (664)
T KOG4568|consen 26 VNNVELGFVRYAGETDFAKGIWAGVELLEPKGKNDGSVHGKRYF--QCEPKKGIF 78 (664)
T ss_pred ecCCcceeeeeccCcccccceeeceeeccccCCCCcccchhhhh--cccccccee
Confidence 35668899999999999999999999999999999999999999 999999999
No 6
>KOG3207|consensus
Probab=99.43 E-value=1.6e-13 Score=114.40 Aligned_cols=56 Identities=27% Similarity=0.466 Sum_probs=51.3
Q ss_pred CCceEEEEEEeecCCCCCcEEEEEEcCC-CCCCCcEECcEEEecccCc-CCceee--ccccc
Q psy18052 5 GSKTGVLRFKGTTQFAQGEWCGVELDEP-IGKNDGKFSAGSTFIWLCA-LILGYH--QSHEA 62 (98)
Q Consensus 5 g~~~GtVRyiG~~~~~~g~wvGVELDep-~GknDGs~~G~rYF~~~C~-~~~GiF--p~~v~ 62 (98)
+...+||||+|.+++.++.|+|||||+| +|||||+++|++|| .|. |+-|+| |.+|.
T Consensus 12 ~~~~~Tvr~iG~V~g~~~~w~GvEWDd~~RGKH~G~vdgk~YF--~~q~P~GGSFik~~kV~ 71 (505)
T KOG3207|consen 12 GGEIATVRYIGEVEGNNSKWYGVEWDDPVRGKHDGIVDGKRYF--QTQHPNGGSFIKPGKVK 71 (505)
T ss_pred cCEEEEEEEEEEEcCCCCcceeeEecCCCccccCceecceeee--eeecCCCccccCCccCC
Confidence 5678999999999999999999999999 59999999999999 886 999999 76654
No 7
>KOG0241|consensus
Probab=98.82 E-value=1.5e-09 Score=97.59 Aligned_cols=61 Identities=38% Similarity=0.429 Sum_probs=53.3
Q ss_pred CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCcccccc
Q psy18052 6 SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEESLTS 72 (98)
Q Consensus 6 ~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~~~~ 72 (98)
-.+++|||+|++.|.+ |||||.|.|||||+..|++|| .|.|+||.| ++++-+.|.+.|...
T Consensus 1642 h~t~v~r~vg~tefq~----gveld~p~gkndgs~gg~qyf--rc~p~~g~~vr~s~~~~~~~~~r~~~ 1704 (1714)
T KOG0241|consen 1642 HTTNVLRDVGFTEFQG----GVELDDPDGKNDGSAGGLQYF--RCLPNKGGGVRVSDGLHHPSQLRSKL 1704 (1714)
T ss_pred cccceeeecchhhccC----cccccCCCCCcCccccceeEE--eecCCCCCcccchhhccCcHhhhhhh
Confidence 4578999999999877 999999999999999999999 999999999 777777776655544
No 8
>KOG4568|consensus
Probab=98.81 E-value=9.5e-10 Score=95.04 Aligned_cols=55 Identities=47% Similarity=0.861 Sum_probs=52.4
Q ss_pred CCCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee-cc
Q psy18052 3 AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH-QS 59 (98)
Q Consensus 3 ~~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF-p~ 59 (98)
..++..|++||.|.+.++.|.|+|+|||+|.|++||++.+++|| .|++.+|.| |.
T Consensus 163 ~~gq~~~~~r~~~~t~fa~g~w~~~elde~~~~~d~sv~k~~~~--~~k~ky~~f~~v 218 (664)
T KOG4568|consen 163 VGGQKSGTLRYSGHTKFASGSWLGVELDEPVGKNDGSVGKVRYF--QCKPKYGKFAPV 218 (664)
T ss_pred ecCcccchhhhhccccccCCcccchhcccccccccccccccccc--cCcchhcchhHH
Confidence 45899999999999999999999999999999999999999999 999999999 63
No 9
>KOG3556|consensus
Probab=98.63 E-value=3.5e-08 Score=84.48 Aligned_cols=54 Identities=28% Similarity=0.369 Sum_probs=49.1
Q ss_pred CCceEEEEEEeecCCCCCcEEEEEEcCCC-----CCCCcEECcEEEecccCcCCceee-ccc
Q psy18052 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPI-----GKNDGKFSAGSTFIWLCALILGYH-QSH 60 (98)
Q Consensus 5 g~~~GtVRyiG~~~~~~g~wvGVELDep~-----GknDGs~~G~rYF~~~C~~~~GiF-p~~ 60 (98)
...+|+|||||..|...++|+|||+++.. +.+||+.+|.||| +|-++..+| +++
T Consensus 251 ~~~ygvVrWIG~pP~~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlf--tc~d~~a~Fv~~~ 310 (724)
T KOG3556|consen 251 RRVYGVVRWIGEPPEASGVLYGVEFEDETSQWPSSNQDGSSSGDRLF--TCFDTNANFVMSG 310 (724)
T ss_pred cccceeeEecccCCcccCceEeeeecCccccCccccccCcccCceee--eeccccceeeEcC
Confidence 36899999999999999999999999864 7799999999999 999999999 654
No 10
>PTZ00243 ABC transporter; Provisional
Probab=93.44 E-value=0.073 Score=50.19 Aligned_cols=44 Identities=30% Similarity=0.302 Sum_probs=36.9
Q ss_pred CCCCceEEEEEEeecC--CCCCcEEEEEEcCCC--------------CCCCcEECcEEEe
Q psy18052 3 AQGSKTGVLRFKGTTQ--FAQGEWCGVELDEPI--------------GKNDGKFSAGSTF 46 (98)
Q Consensus 3 ~~g~~~GtVRyiG~~~--~~~g~wvGVELDep~--------------GknDGs~~G~rYF 46 (98)
.++.-+|++||+|.+. ..++.++||||.-|- +-|||.+.|.+.|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1560)
T PTZ00243 135 LDASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLF 194 (1560)
T ss_pred ccccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCcccccccccccccc
Confidence 3667899999999996 567899999999761 2489999999999
No 11
>PRK10708 hypothetical protein; Provisional
Probab=38.14 E-value=1.1e+02 Score=19.52 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=29.9
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcC-CCCCCCcEECcEEEecccCcCCceee
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDE-PIGKNDGKFSAGSTFIWLCALILGYH 57 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDe-p~GknDGs~~G~rYF~~~C~~~~GiF 57 (98)
...+.|+|.-+ -+|..|+++=|.|++ |. |+-|| .+-...-|+|
T Consensus 14 ~~rR~G~iLav--E~F~EG~MyLvaL~dYP~--------GiWFF-NE~~~~~G~F 57 (62)
T PRK10708 14 GPRRPGVVLAV--EEFSEGTMYLVSLEDYPL--------GIWFF-NEAGHQDGIF 57 (62)
T ss_pred CccccceEEEE--eeccCcEEEEEEcCcCCC--------ceEEE-eccCCCCceE
Confidence 44567888777 467889999999987 44 34577 3445666777
No 12
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=34.06 E-value=1.3e+02 Score=19.18 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=29.4
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcC-CCCCCCcEECcEEEecccCcCCceee
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDE-PIGKNDGKFSAGSTFIWLCALILGYH 57 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDe-p~GknDGs~~G~rYF~~~C~~~~GiF 57 (98)
...+.|+|.-+ -+|..|+++=|.|++ |. |+-|| .+-...-|+|
T Consensus 14 ~~rR~G~ilav--E~F~EG~MYLvaL~dYP~--------GiWFF-NE~~~~dG~F 57 (62)
T PF10781_consen 14 GPRREGVILAV--EPFNEGTMYLVALEDYPA--------GIWFF-NEKDSPDGTF 57 (62)
T ss_pred cccccceEEEE--eeccCcEEEEEEcCcCCc--------ceEEE-ecCCCCCcEE
Confidence 34567787776 457789999999987 44 34577 3445666777
No 13
>COG3350 Uncharacterized conserved protein [Function unknown]
Probab=30.58 E-value=23 Score=21.99 Aligned_cols=30 Identities=13% Similarity=0.450 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCCCCcEECcEEEecccCcCCc
Q psy18052 23 EWCGVELDEPIGKNDGKFSAGSTFIWLCALIL 54 (98)
Q Consensus 23 ~wvGVELDep~GknDGs~~G~rYF~~~C~~~~ 54 (98)
..+|..+|...-..-=+++|+.|| -|.+.+
T Consensus 6 PVcgm~v~~~~a~~k~~Y~GktYY--Fcse~~ 35 (53)
T COG3350 6 PVCGMKVDNENAEYKSSYGGKTYY--FCSEEC 35 (53)
T ss_pred CCcCccccccccceeEEeCCEEEE--EeCHHH
Confidence 446677776665556679999999 897554
No 14
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=30.44 E-value=96 Score=19.87 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=24.5
Q ss_pred CCcEEEEEEcCCCCC----CCcEEC-cEEEecccCcCCceeec
Q psy18052 21 QGEWCGVELDEPIGK----NDGKFS-AGSTFIWLCALILGYHQ 58 (98)
Q Consensus 21 ~g~wvGVELDep~Gk----nDGs~~-G~rYF~~~C~~~~GiFp 58 (98)
++..+||-||-+.|. .+|... +..++ .+...-.+||
T Consensus 65 ~gd~iGv~lD~~~g~l~F~~ng~~~~~~~f~--~~~~~~~l~P 105 (122)
T smart00449 65 PGDVIGCFLDLEAGTISFYKNGKYLHGLAFF--DVKFSGPLYP 105 (122)
T ss_pred CCCEEEEEEECCCCEEEEEECCCEeeeEEEe--ccCCCCcEee
Confidence 378899999988774 567766 56666 5554445554
Done!