Query psy18052
Match_columns 98
No_of_seqs 118 out of 835
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 21:16:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rdv_A CAP-Gly domain-containi 99.9 2.2E-25 7.4E-30 143.8 7.2 58 4-63 12-71 (72)
2 2cp3_A CLIP-115, KIAA0291; mic 99.9 3.5E-25 1.2E-29 146.5 7.9 64 4-69 17-82 (84)
3 2cp0_A Clipr-59 protein, clipr 99.9 4.1E-25 1.4E-29 149.2 8.1 65 4-70 26-92 (95)
4 2cp2_A CLIP-115, KIAA0291; mic 99.9 7.3E-25 2.5E-29 148.0 8.0 62 5-68 29-92 (95)
5 2z0w_A CAP-Gly domain-containi 99.9 1.1E-24 3.7E-29 147.3 8.0 62 4-67 20-83 (96)
6 1txq_A Dynactin 1; protein com 99.9 1E-24 3.5E-29 146.5 7.2 64 6-71 25-90 (93)
7 1whh_A Clipr-59; microtubule b 99.9 1.5E-24 5E-29 148.2 7.8 64 4-69 35-100 (102)
8 2e3i_A Restin; CAP-Gly, cytopl 99.9 1.7E-24 5.8E-29 143.8 7.7 58 4-63 12-71 (86)
9 2e3h_A Restin; CAP-Gly, cytopl 99.9 2.3E-24 7.9E-29 144.2 7.8 58 4-63 11-70 (90)
10 1whj_A 1700024K14RIK, riken cD 99.9 2.8E-24 9.6E-29 146.8 8.3 63 4-68 34-98 (102)
11 4b6m_A Tubulin-specific chaper 99.9 3.4E-24 1.2E-28 142.2 8.0 58 4-63 16-76 (84)
12 2coz_A CAP350, centrosome-asso 99.9 3.4E-24 1.1E-28 150.5 8.3 65 4-70 41-107 (122)
13 1lpl_A Hypothetical 25.4 kDa p 99.9 3E-24 1E-28 144.7 7.7 60 6-67 27-90 (95)
14 1whk_A 1700024K14RIK, riken cD 99.9 2E-24 6.7E-29 144.8 6.1 60 6-67 25-86 (91)
15 2cow_A Kinesin-like protein KI 99.9 4.1E-24 1.4E-28 145.6 7.7 64 4-69 33-98 (100)
16 1whl_A Cylindromatosis tumor s 99.9 5E-24 1.7E-28 143.3 6.9 60 6-67 24-91 (95)
17 2coy_A Dynactin-1; microtubule 99.9 9.8E-24 3.4E-28 146.1 7.9 60 6-67 46-107 (112)
18 2cp5_A Restin; microtubule bin 99.9 1.8E-23 6.3E-28 149.8 8.2 64 4-69 74-139 (141)
19 1whg_A Tubulin specific chaper 99.9 2E-23 7E-28 144.6 7.6 59 6-66 48-110 (113)
20 1ixd_A Cylindromatosis tumour- 99.9 2.5E-23 8.5E-28 142.4 6.8 57 4-62 29-88 (104)
21 2cp6_A Restin; microtubule bin 99.9 2.4E-22 8.2E-27 147.9 8.2 57 4-62 48-106 (172)
22 1whm_A Cylindromatosis tumor s 99.8 1E-20 3.5E-25 127.4 7.0 54 6-60 24-80 (92)
23 2kct_A Cytochrome C-type bioge 35.8 36 0.0012 22.0 3.3 44 6-54 42-89 (94)
No 1
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.92 E-value=2.2e-25 Score=143.83 Aligned_cols=58 Identities=45% Similarity=0.853 Sum_probs=54.2
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cccccc
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAK 63 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~ 63 (98)
.+..+|+|||+|++++.+|.|+|||||+|.|||||+++|+||| +|+|+||+| |++|++
T Consensus 12 ~g~~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~G~rYF--~c~p~~G~Fv~~~kvsr 71 (72)
T 3rdv_A 12 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYF--QCEPLKGIFTRPSKLTR 71 (72)
T ss_dssp TTTEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESC--CCSTTCEEEECGGGEEC
T ss_pred CCCCEEEEEEeeeCCCCCceEEEEEECCCCCccCCEECCEEeC--ccCCCCEEEecHHHccc
Confidence 4567999999999999999999999999999999999999999 999999999 666765
No 2
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.92 E-value=3.5e-25 Score=146.52 Aligned_cols=64 Identities=47% Similarity=0.854 Sum_probs=58.3
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCccc
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEES 69 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~ 69 (98)
.+.++|+|||+|++++.++.|+|||||+|.|||||+++|+||| +|+|+||+| |.+|.+..+..+
T Consensus 17 ~g~~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~G~rYF--~c~~~~G~Fv~~~kv~~~~~~~~ 82 (84)
T 2cp3_A 17 GGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF--QCPPKFGLFAPIHKVIRIGSGPS 82 (84)
T ss_dssp TTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESS--CCCTTTEEEEEGGGEEECCCSSC
T ss_pred CCCCeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEECCEEee--ecCCCeEEEEcHHHeEEcccCCC
Confidence 3567999999999999999999999999999999999999999 999999999 566888776654
No 3
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.92 E-value=4.1e-25 Score=149.20 Aligned_cols=65 Identities=48% Similarity=0.767 Sum_probs=59.6
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCcccc
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEESL 70 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~~ 70 (98)
.+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+||| +|+++||+| |.+|.+.++....
T Consensus 26 ~g~~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~G~rYF--~C~~~~G~Fv~~~kv~~~~~~~~~ 92 (95)
T 2cp0_A 26 DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYF--ICPPKQGLFASVSKISKAVDASGP 92 (95)
T ss_dssp TTTEEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECC--CCSSSCEEEECGGGEEECSCCCSC
T ss_pred CCCCeEEEEEecccCCCCCcEEEEEecCCCCcCCCEECCEEee--ecCCCcEEEEcHHHeecCCCCCCC
Confidence 4567999999999999999999999999999999999999999 999999999 6679988887543
No 4
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.91 E-value=7.3e-25 Score=147.97 Aligned_cols=62 Identities=42% Similarity=0.800 Sum_probs=58.1
Q ss_pred CCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCcc
Q psy18052 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEE 68 (98)
Q Consensus 5 g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~ 68 (98)
+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+||| +|+|+||+| |.+|.+.|.+.
T Consensus 29 g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~G~Fvr~~kv~~~p~~~ 92 (95)
T 2cp2_A 29 GVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYF--ECPALQGIFTRPSKLTRQPSGP 92 (95)
T ss_dssp GSCEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEETTEECC--CCCTTTEEEECGGGCCSSCCSS
T ss_pred CceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEec--ccCCCeEEEEcHHHCccCCCCC
Confidence 467999999999999999999999999999999999999999 999999999 67799888764
No 5
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=147.32 Aligned_cols=62 Identities=39% Similarity=0.696 Sum_probs=56.1
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCc
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYE 67 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~ 67 (98)
.+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+||| +|+|+||+| |.+|....+.
T Consensus 20 ~g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~G~Fv~~~~v~~~~~~ 83 (96)
T 2z0w_A 20 VGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYF--SCSPRYGIFAPPSRVQRVTDS 83 (96)
T ss_dssp CCCCCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESS--CCCTTSEEEECGGGCCCTTC-
T ss_pred CCCcEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEECCEEee--ecCCCeEEEEcHHHceeccch
Confidence 4678999999999999999999999999999999999999999 999999999 5667765554
No 6
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.91 E-value=1e-24 Score=146.52 Aligned_cols=64 Identities=36% Similarity=0.533 Sum_probs=54.7
Q ss_pred CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCccccc
Q psy18052 6 SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEESLT 71 (98)
Q Consensus 6 ~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~~~ 71 (98)
.++|+|||+|++++.+|.|+|||||+|.|||||+++|+||| +|+++||+| |.+|....+...++
T Consensus 25 ~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF--~C~~~~G~Fvr~~~v~~~~~~~~~~ 90 (93)
T 1txq_A 25 GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYF--TCDEGHGIFVRQSQIQVFEDGADTT 90 (93)
T ss_dssp CCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESC--CCCTTCEEEECGGGEEECC------
T ss_pred CeEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEee--ecCCCeEEEEcHHHeEEccCCCCCC
Confidence 58999999999999999999999999999999999999999 999999999 66687766654444
No 7
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.91 E-value=1.5e-24 Score=148.25 Aligned_cols=64 Identities=41% Similarity=0.676 Sum_probs=57.7
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCccc
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEES 69 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~ 69 (98)
.+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+||| +|+|+||+| |.+|.+..+..+
T Consensus 35 ~g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~GiFvr~~~v~~~~d~p~ 100 (102)
T 1whh_A 35 AGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYF--TCAPRHGVFAPASRIQRIGSGPS 100 (102)
T ss_dssp TTTEEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECS--CCCTTTEEEECGGGEEECCSCTT
T ss_pred CCCcEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEECCEEee--ecCCCcEEEecHHHeEECCCCCC
Confidence 4568999999999999999999999999999999999999999 999999999 666877666543
No 8
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.91 E-value=1.7e-24 Score=143.77 Aligned_cols=58 Identities=45% Similarity=0.853 Sum_probs=53.8
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cccccc
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAK 63 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~ 63 (98)
.+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+||| +|+|+||+| |.+|..
T Consensus 12 ~g~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF--~c~~~~G~Fvr~~~v~~ 71 (86)
T 2e3i_A 12 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYF--QCEPLKGIFTRPSKLTR 71 (86)
T ss_dssp TTTEEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESS--CCSTTCEEEECGGGEES
T ss_pred CCCcEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEECCEEee--ecCCCeEEEEcHHHccc
Confidence 3567999999999999999999999999999999999999999 999999999 666654
No 9
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.91 E-value=2.3e-24 Score=144.23 Aligned_cols=58 Identities=52% Similarity=0.964 Sum_probs=53.6
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cccccc
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAK 63 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~ 63 (98)
.+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+||| +|+|+||+| |.+|+.
T Consensus 11 ~g~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF--~C~p~~G~Fv~~~kv~~ 70 (90)
T 2e3h_A 11 GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF--QCQPKYGLFAPVHKVTK 70 (90)
T ss_dssp TTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESC--CCCTTCEEEEEGGGEEE
T ss_pred CCCCEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEECCEEee--ecCCCcEEEEcHHHeEE
Confidence 4567999999999999999999999999999999999999999 999999999 556654
No 10
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.91 E-value=2.8e-24 Score=146.82 Aligned_cols=63 Identities=46% Similarity=0.741 Sum_probs=58.1
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCcc
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEE 68 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~ 68 (98)
.+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+||| +|+++||+| |.+|.++++..
T Consensus 34 ~g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~G~Fv~~~kv~~~~~~~ 98 (102)
T 1whj_A 34 AGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYF--KCAPKYGIFAPLSKISKLKDSG 98 (102)
T ss_dssp TTTEEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECC--CCCTTTEEEEEGGGEEESSSCC
T ss_pred CCCCEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEECCEEec--ccCCCeEEEEeHHHccccCCCC
Confidence 4568999999999999999999999999999999999999999 999999999 56788877763
No 11
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=99.90 E-value=3.4e-24 Score=142.19 Aligned_cols=58 Identities=34% Similarity=0.684 Sum_probs=52.4
Q ss_pred CCCceEEEEEEeecC-CCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cccccc
Q psy18052 4 QGSKTGVLRFKGTTQ-FAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAK 63 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~-~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~ 63 (98)
++.++|+|||+|+++ +++|.|+|||||+|.||||||++|+||| +|+|+||+| |.+|+.
T Consensus 16 ~~~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF--~C~~~~G~Fvr~~~v~~ 76 (84)
T 4b6m_A 16 PGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVF--QCQPNYGGFLRPDQVEV 76 (84)
T ss_dssp TTTEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESS--CCCTTSEEEECGGGEEE
T ss_pred CCCeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEE--ecCCCeEEEecHHHeEE
Confidence 456899999999975 6889999999999999999999999999 999999999 666653
No 12
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.90 E-value=3.4e-24 Score=150.46 Aligned_cols=65 Identities=37% Similarity=0.646 Sum_probs=59.1
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCcccc
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEESL 70 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~~ 70 (98)
.+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+||| +|+++||+| |.+|..+|+....
T Consensus 41 ~g~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF--~C~p~~GiFVr~~kv~~~pe~~~~ 107 (122)
T 2coz_A 41 GNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYF--ECKEKHGIFAPPQKISHIPENFDD 107 (122)
T ss_dssp TTTEEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECC--CCCSSCEEEECGGGEECCCTTCCS
T ss_pred CCCcEEEEEEecccCCCCCeEEEEEeCCCCCccCCEECCEEee--ecCCCcEEEecHHHCccCCccccc
Confidence 3468999999999999999999999999999999999999999 999999999 6678888876433
No 13
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=99.90 E-value=3e-24 Score=144.75 Aligned_cols=60 Identities=33% Similarity=0.622 Sum_probs=54.7
Q ss_pred CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccc--cCCCc
Q psy18052 6 SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEA--KSPYE 67 (98)
Q Consensus 6 ~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~--~~p~~ 67 (98)
.++|||||+|++++.+|.|+|||||+|.|||||+++|+||| +|+|+||+| |.+|. ..|..
T Consensus 27 ~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~G~Fvr~~~v~~gdfp~~ 90 (95)
T 1lpl_A 27 ARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYF--DCDPKYGGFVRPVDVKVGDFPEL 90 (95)
T ss_dssp CEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECS--CCCTTSEEEECGGGEEESCCCCC
T ss_pred ceEEEEEEecccCCCCCEEEEEEccCCCCccCCEECCEEEe--EeCCCEEEEEcHHHceECCCCCC
Confidence 79999999999999999999999999999999999999999 999999999 56654 45554
No 14
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.90 E-value=2e-24 Score=144.83 Aligned_cols=60 Identities=32% Similarity=0.534 Sum_probs=55.6
Q ss_pred CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCc
Q psy18052 6 SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYE 67 (98)
Q Consensus 6 ~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~ 67 (98)
.++|+|||+|++++.++.|+|||||+|.|||||+++|+||| +|+|+||+| |.+|...+..
T Consensus 25 ~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~~~~G~Fvr~~~v~~~~~~ 86 (91)
T 1whk_A 25 NEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYF--TCKPNYGVLVRPSRVTYRGIS 86 (91)
T ss_dssp CCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECC--CCSTTCCCEECGGGEECCCCC
T ss_pred CeEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEEe--ecCCCeEEEEchHHcEEcCCC
Confidence 68999999999999999999999999999999999999999 999999999 6667766544
No 15
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.90 E-value=4.1e-24 Score=145.60 Aligned_cols=64 Identities=39% Similarity=0.670 Sum_probs=58.3
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCccc
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEES 69 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~ 69 (98)
.+.++|+|||+|++++.++.|+|||||+|.|||||+++|+||| +|+|+||+| |.+|.+.++...
T Consensus 33 ~g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~GiFvr~~~v~~~~~~p~ 98 (100)
T 2cow_A 33 GAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYF--RCNPGYGLLVRPSRVRRATSGPS 98 (100)
T ss_dssp SSSCEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECC--CSCTTCCEEECGGGCEECCCCSS
T ss_pred CCCcEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEee--ecCCCeEEEecHHHeeECCCCCC
Confidence 3568999999999999999999999999999999999999999 999999999 667887776643
No 16
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.90 E-value=5e-24 Score=143.33 Aligned_cols=60 Identities=28% Similarity=0.373 Sum_probs=54.0
Q ss_pred CceEEEEEEeecC---CCCCcEEEEEEcCC---CCCCCcEECcEEEecccCcCCceee--ccccccCCCc
Q psy18052 6 SKTGVLRFKGTTQ---FAQGEWCGVELDEP---IGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYE 67 (98)
Q Consensus 6 ~~~GtVRyiG~~~---~~~g~wvGVELDep---~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~ 67 (98)
.++|||||+|+++ +.+|.|+|||||+| .|||||+++|+||| +|+|+||+| |.+|....++
T Consensus 24 ~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF--~C~~~~G~Fv~~~~v~~~~~~ 91 (95)
T 1whl_A 24 KFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLF--QCDEDCGVFVALDKLELIESG 91 (95)
T ss_dssp EEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECC--CCCTTTEEEECGGGEEECCSC
T ss_pred ceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEe--ecCCCeEEEEcHHHeEEcCcC
Confidence 5899999999998 79999999999999 89999999999999 999999999 5667654443
No 17
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.89 E-value=9.8e-24 Score=146.15 Aligned_cols=60 Identities=37% Similarity=0.564 Sum_probs=55.8
Q ss_pred CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCc
Q psy18052 6 SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYE 67 (98)
Q Consensus 6 ~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~ 67 (98)
.++|+|||+|++++.+|.|+|||||+|.|||||+++|+||| +|+|+||+| |.+|....++
T Consensus 46 g~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~GiFVr~~~v~~~~~~ 107 (112)
T 2coy_A 46 GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYF--TCDEGHGIFVRQSQIQVFEDS 107 (112)
T ss_dssp CCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECS--CCCTTTEEEECGGGEEECCCC
T ss_pred CeEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEee--ecCCCeEEEEchHHeEEcCCC
Confidence 58999999999999999999999999999999999999999 999999999 6668776665
No 18
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.89 E-value=1.8e-23 Score=149.82 Aligned_cols=64 Identities=42% Similarity=0.759 Sum_probs=58.5
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCccc
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEES 69 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~ 69 (98)
.+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+||| +|+++||+| |.+|.+.++..+
T Consensus 74 ~G~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF--~C~p~~GiFVrp~kv~~~~~~~~ 139 (141)
T 2cp5_A 74 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYF--QCEPLKGIFTRPSKLTRKVSGPS 139 (141)
T ss_dssp TTSCEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEETTEESS--CCCTTTEEEECGGGEESSCCCCS
T ss_pred CCCcEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEECCEEee--ecCCCcEEEechHHeeeccCCCC
Confidence 3567999999999999999999999999999999999999999 999999999 677888776643
No 19
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.89 E-value=2e-23 Score=144.63 Aligned_cols=59 Identities=36% Similarity=0.625 Sum_probs=54.1
Q ss_pred CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccc--cCCC
Q psy18052 6 SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEA--KSPY 66 (98)
Q Consensus 6 ~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~--~~p~ 66 (98)
.++|||||+|++++.+|.|+|||||+|.|||||+++|+||| +|+|+||+| |.+|. ..|.
T Consensus 48 ~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~GiFvr~~~v~~gdfp~ 110 (113)
T 1whg_A 48 LRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYF--ECQAKYGAFVKPSAVTVGDSGP 110 (113)
T ss_dssp CEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECS--CCCTTTEEEECGGGEEEEECCS
T ss_pred ceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEEe--eeCCCeEEEECHHHeEECCCCC
Confidence 79999999999999999999999999999999999999999 999999999 55553 4554
No 20
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.88 E-value=2.5e-23 Score=142.42 Aligned_cols=57 Identities=30% Similarity=0.387 Sum_probs=52.7
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEE-cCCCCCCCcEECcEEEecccCcCCceee--ccccc
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVEL-DEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEA 62 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVEL-Dep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~ 62 (98)
.+.++|||||+|++++.+|.|+|||| |+|.|||||+++|+||| +|+++||+| |.+|.
T Consensus 29 ~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF--~C~p~~G~FVr~~~v~ 88 (104)
T 1ixd_A 29 NPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYF--TCALKKALFVKLKSCR 88 (104)
T ss_dssp SSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECS--CCCTTCBEEEEGGGEE
T ss_pred CCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEee--ecCCCcEEEEcHHHce
Confidence 34789999999999999999999999 88999999999999999 999999999 55654
No 21
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.87 E-value=2.4e-22 Score=147.94 Aligned_cols=57 Identities=51% Similarity=0.962 Sum_probs=53.1
Q ss_pred CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccc
Q psy18052 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEA 62 (98)
Q Consensus 4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~ 62 (98)
.+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+||| +|+|+||+| |.+|.
T Consensus 48 ~g~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF--~C~p~~GiFVr~~kV~ 106 (172)
T 2cp6_A 48 GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF--QCQPKYGLFAPVHKVT 106 (172)
T ss_dssp TTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECC--CCCTTTEEEEEGGGCE
T ss_pred CCCceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEECCEEee--eeCCCeEEEechHHeE
Confidence 4568999999999999999999999999999999999999999 999999999 55564
No 22
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.83 E-value=1e-20 Score=127.39 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=49.2
Q ss_pred CceEEEEEEeecCCC--CCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee-ccc
Q psy18052 6 SKTGVLRFKGTTQFA--QGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH-QSH 60 (98)
Q Consensus 6 ~~~GtVRyiG~~~~~--~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF-p~~ 60 (98)
.++|||||+|+++.. ++.|+|||||+|.|||||+++|+||| ..|+++||+| |..
T Consensus 24 ~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF-~~c~~~~g~fV~~~ 80 (92)
T 1whm_A 24 IESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLC-SFACVESTILLHIN 80 (92)
T ss_dssp EEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESC-SSCCTTTEEEEEGG
T ss_pred eeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEec-cccCCCcceEcccc
Confidence 589999999999864 68999999999999999999999999 4799999999 543
No 23
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=35.77 E-value=36 Score=21.98 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=24.4
Q ss_pred CceEEEEEEeecC--CCCCcEEEE--EEcCCCCCCCcEECcEEEecccCcCCc
Q psy18052 6 SKTGVLRFKGTTQ--FAQGEWCGV--ELDEPIGKNDGKFSAGSTFIWLCALIL 54 (98)
Q Consensus 6 ~~~GtVRyiG~~~--~~~g~wvGV--ELDep~GknDGs~~G~rYF~~~C~~~~ 54 (98)
...=.|+|.|.+| |..|.-+=+ .|+ ..||++...... .+|+.+|
T Consensus 42 ~~~v~V~Y~GilPDlFrEGqgVV~~G~l~----~~~g~F~A~evL-aKh~e~~ 89 (94)
T 2kct_A 42 SKTVWVLYKGAVPDTFKPGVEVIIEGGLA----PGEDTFKARTLM-TKCPLEH 89 (94)
T ss_dssp TCEEEEEEESCCCTTCCTTCEEEEEEEEC----TTCSEEEEEEEE-ESSCCC-
T ss_pred CcEEEEEECCCCCccccCCCeEEEEEEEe----CCCCEEEEeEEE-EeCCCcc
Confidence 4455788888887 455522211 121 116777777766 4577665
Done!