RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18052
(98 letters)
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Length = 86
Score = 66.6 bits (163), Expect = 2e-16
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G+K G ++F G TQFA G+W G+ LDEPIGKNDG
Sbjct: 12 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSV 48
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 141
Score = 68.1 bits (166), Expect = 2e-16
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G+K G ++F G TQFA G+W G+ LDEPIGKNDG
Sbjct: 74 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSV 110
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB:
2e4h_A
Length = 90
Score = 66.6 bits (163), Expect = 2e-16
Identities = 26/37 (70%), Positives = 30/37 (81%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G+K GV+RF G T FA+GEWCGVELDEP+GKNDG
Sbjct: 11 GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAV 47
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 68.6 bits (167), Expect = 3e-16
Identities = 26/37 (70%), Positives = 30/37 (81%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G+K GV+RF G T FA+GEWCGVELDEP+GKNDG
Sbjct: 48 GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAV 84
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 102
Score = 66.7 bits (163), Expect = 3e-16
Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G K G LRF GTT+FA G+W G+ELDEP GKN+G
Sbjct: 34 AGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSV 70
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Length = 95
Score = 66.3 bits (162), Expect = 4e-16
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G K GV+++ G TQFA G+W GV LD+P+GKNDG
Sbjct: 28 NGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAV 64
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein,
CAP Gly protein complex, structural PR; HET: BME; 1.75A
{Homo sapiens} PDB: 2qk0_A
Length = 72
Score = 65.7 bits (161), Expect = 4e-16
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G+K G ++F G TQFA G+W G+ LDEPIGKNDG
Sbjct: 12 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSV 48
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing,
ANK repeat, protein binding, structural genomics,
NPPSFA; 2.50A {Homo sapiens}
Length = 96
Score = 66.3 bits (162), Expect = 4e-16
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G + G +RF GTT FA G W G+EL++P GKNDG
Sbjct: 21 GQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSV 56
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, structural protein; NMR {Mus
musculus} SCOP: b.34.10.1
Length = 102
Score = 66.3 bits (162), Expect = 5e-16
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G K G++RF G T FA G W G+ELD+P GK+DG
Sbjct: 36 GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSV 71
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 84
Score = 65.4 bits (160), Expect = 6e-16
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG
Sbjct: 17 GGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAV 53
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton
associated protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 95
Score = 65.9 bits (161), Expect = 6e-16
Identities = 26/37 (70%), Positives = 28/37 (75%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G KTG LRF GTT+FA G+W GVELDEP GKNDG
Sbjct: 26 DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSV 62
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural
genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI;
1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB:
1tov_A
Length = 95
Score = 65.9 bits (161), Expect = 6e-16
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 2 SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
AQ ++ G + + G T+F +G W GV+ DEP+GKNDG
Sbjct: 23 GAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSV 61
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding,
cytoskeleton associated protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 122
Score = 66.1 bits (161), Expect = 8e-16
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
+ G+LRFKG T FA+G W GVELD+P G N+G +
Sbjct: 42 NVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTY 77
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton
associated protein, KIAA0639, kinesin-like protein
gakin, structural genomics; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 100
Score = 65.2 bits (159), Expect = 1e-15
Identities = 20/36 (55%), Positives = 23/36 (63%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
KTGV+R+ G F +G W GVELD P GKNDG
Sbjct: 34 AHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSI 69
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein,
P150- glued, DAP-150, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 112
Score = 65.2 bits (159), Expect = 2e-15
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G + + G T FA G+W GV LDE GKNDG
Sbjct: 45 KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTV 80
>1txq_A Dynactin 1; protein complex, structural protein/protein binding
complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB:
2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Length = 93
Score = 64.3 bits (157), Expect = 2e-15
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G + + G T FA G+W GV LDE GKNDG
Sbjct: 24 KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTV 59
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 91
Score = 63.9 bits (156), Expect = 3e-15
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
++ +R+ G T FA G W G+EL GKNDG
Sbjct: 24 SNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAV 59
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton
associated protein, ckapi, structural genomics; NMR
{Mus musculus} SCOP: b.34.10.1
Length = 113
Score = 60.3 bits (146), Expect = 2e-13
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 2 SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
+ G + + G T F G W GV DEP+GKNDG
Sbjct: 44 PDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSV 82
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics,
riken structural genomics/proteomics initiative, RSGI,
antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 104
Score = 57.1 bits (138), Expect = 2e-12
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 2 SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPI-GKNDGKF 40
GV+R+ G G+EL++ G DG F
Sbjct: 27 KENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTF 66
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 95
Score = 47.9 bits (114), Expect = 6e-09
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 5 GSKTGVLRFKGT---TQFAQGEWCGVELDE---PIGKNDGKF 40
GV+RF+G + G + GVEL E G DG +
Sbjct: 23 EKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVY 64
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 92
Score = 47.9 bits (113), Expect = 6e-09
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 2 SAQGSKTGVLRFKGT--TQFAQGEWCGVELDEPIGKNDGKF 40
+ ++G + F + + G + GV++D PIG DG+F
Sbjct: 20 VGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRF 60
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic;
2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Length = 511
Score = 28.9 bits (63), Expect = 0.24
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 18 QFAQGEWCGVELDEPIGKNDG 38
G G+ P G D
Sbjct: 32 DVKPGGSSGLAPSMPPGWGDY 52
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered
Se-Met, structural genomics, putative ribosomal protein,
PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1
PDB: 2q16_A* 2pyu_A*
Length = 221
Score = 25.6 bits (57), Expect = 3.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 15 GTTQFAQGEWCGVELDEPIGKN 36
T G W GV EP G
Sbjct: 153 PTPLVCHGSWPGVITREPAGTG 174
>3tqu_A Non-canonical purine NTP pyrophosphatase; HAM1 protein, hydrolase;
HET: MSE; 1.90A {Coxiella burnetii}
Length = 203
Score = 25.1 bits (56), Expect = 4.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 15 GTTQFAQGEWCGVELDEPIGKN 36
G W G EP GKN
Sbjct: 134 PAPLICHGVWEGEIAREPRGKN 155
>3lhc_A Cyanovirin-N, CV-N; sugar binding protein, HIV-inactivating,
GP120 antiviral protein, protein synthesis inhibitor,
lectin; 1.34A {Nostoc ellipsosporum} PDB: 2rp3_A 3czz_A
1iiy_A* 1j4v_A 1l5b_A* 1l5e_A 1m5j_A* 1m5m_A* 2ezm_A
2ezn_A 3ezm_A 3gxy_A* 3gxz_A* 1lom_A 2rdk_A* 2pys_A*
2z21_A
Length = 100
Score = 23.6 bits (51), Expect = 9.2
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 12 RFKGTTQFAQ-----GEW--CGVELDEPIGKNDGKFSAGSTFIWLC 50
+G+ + G + ++L+ I DG S FI C
Sbjct: 12 AIQGSVLTSTCERTNGGYNTSSIDLNSVIAAVDGSLKWPSNFIEAC 57
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 24.5 bits (52), Expect = 9.3
Identities = 8/56 (14%), Positives = 16/56 (28%)
Query: 37 DGKFSAGSTFIWLCALILGYHQSHEAKSPYEESLTSFICKVCTWFCISRVQDMITC 92
DG IW L ++ +E L + + + +Q+
Sbjct: 93 DGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWYQRKTAPYKNVNIQNFHIS 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.460
Gapped
Lambda K H
0.267 0.0864 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,410,831
Number of extensions: 65712
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 28
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.2 bits)