RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18052
(98 letters)
>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 61.7 bits (150), Expect = 9e-15
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G K G++RF G T FA G W G+ELD+P GK+DG
Sbjct: 36 GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSV 71
>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3
{Caenorhabditis elegans [TaxId: 6239]}
Length = 98
Score = 61.4 bits (149), Expect = 1e-14
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 2 SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
AQ ++ G + + G T+F +G W GV+ DEP+GKNDG
Sbjct: 26 GAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSV 64
>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 60.6 bits (147), Expect = 3e-14
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
+ G+LRFKG T FA+G W GVELD+P G N+G +
Sbjct: 35 NVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTY 70
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 160
Score = 61.6 bits (149), Expect = 4e-14
Identities = 26/37 (70%), Positives = 30/37 (81%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G+K GV+RF G T FA+GEWCGVELDEP+GKNDG
Sbjct: 41 GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAV 77
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 59.4 bits (144), Expect = 5e-14
Identities = 26/37 (70%), Positives = 28/37 (75%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G KTG LRF GTT+FA G+W GVELDEP GKNDG
Sbjct: 20 DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSV 56
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 71
Score = 58.9 bits (143), Expect = 7e-14
Identities = 26/37 (70%), Positives = 30/37 (81%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G+K GV+RF G T FA+GEWCGVELDEP+GKNDG
Sbjct: 10 GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAV 46
>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 59.0 bits (143), Expect = 9e-14
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
KTGV+R+ G F +G W GVELD P GKNDG
Sbjct: 27 GAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSI 63
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 102
Score = 59.5 bits (144), Expect = 9e-14
Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G K G LRF GTT+FA G+W G+ELDEP GKN+G
Sbjct: 34 AGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSV 70
>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 58.2 bits (141), Expect = 1e-13
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFS 41
G+K G ++F G TQFA G+W G+ LDEPIGKNDG +
Sbjct: 11 GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVA 47
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 91
Score = 56.3 bits (136), Expect = 1e-12
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
++ +R+ G T FA G W G+EL GKNDG
Sbjct: 24 SNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAV 59
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 53.9 bits (130), Expect = 5e-12
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
G + + G T FA G+W GV LDE GKNDG
Sbjct: 13 KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTV 48
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 113
Score = 55.3 bits (133), Expect = 5e-12
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
+ G + + G T F G W GV DEP+GKNDG
Sbjct: 46 HSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSV 82
>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 54.1 bits (130), Expect = 7e-12
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 2 SAQGSKTGVLRFKGT--TQFAQGEWCGVELDEPIGKNDGKF 40
+ ++G + F + + G + GV++D PIG DG+F
Sbjct: 20 VGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRF 60
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 50.6 bits (121), Expect = 2e-10
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 4 QGSKTGVLRFKGTTQFAQGEWCGVEL-DEPIGKNDGKF 40
GV+R+ G G+EL DE G DG F
Sbjct: 29 NPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTF 66
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 43.3 bits (102), Expect = 1e-07
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 2 SAQGSKTGVLRFKGTTQFAQ---GEWCGVELDE---PIGKNDGKF 40
S + GV+RF+G + G + GVEL E G DG +
Sbjct: 20 SGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVY 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.460
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 363,487
Number of extensions: 13703
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 17
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.0 bits)