BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18055
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 150 bits (378), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/124 (59%), Positives = 86/124 (69%), Gaps = 29/124 (23%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMG----------------- 43
+QQTM RIKDP+KSL FYT+VLG++LL+KLDFPAMKFSLYF+
Sbjct: 32 LQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAW 91
Query: 44 ------------NWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVK 91
NWGTE DE +YHNGNSDPRGFGHIGI VPDV AC+RFE+LGV+FVK
Sbjct: 92 TFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 151
Query: 92 KPND 95
KP+D
Sbjct: 152 KPDD 155
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 145 bits (366), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/124 (57%), Positives = 84/124 (67%), Gaps = 29/124 (23%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMG----------------- 43
+QQTM R+KDP+KSL FYT+VLGM+L++K DFP MKFSLYF+
Sbjct: 35 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 94
Query: 44 ------------NWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVK 91
NWGTE DE +YHNGNSDPRGFGHIGI VPDV AC+RFE+LGV+FVK
Sbjct: 95 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 154
Query: 92 KPND 95
KP+D
Sbjct: 155 KPDD 158
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 145 bits (366), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 71/124 (57%), Positives = 84/124 (67%), Gaps = 29/124 (23%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMG----------------- 43
+QQTM R+KDP+KSL FYT+VLGM+L++K DFP MKFSLYF+
Sbjct: 31 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 44 ------------NWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVK 91
NWGTE DE +YHNGNSDPRGFGHIGI VPDV AC+RFE+LGV+FVK
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 150
Query: 92 KPND 95
KP+D
Sbjct: 151 KPDD 154
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 144 bits (362), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 84/124 (67%), Gaps = 29/124 (23%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMG----------------- 43
+Q+TM R+KDP+KSL FYT+VLGM+L++K DFP MKFSLYF+
Sbjct: 31 LQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 44 ------------NWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVK 91
NWGTE DE +YHNGNSDPRGFGHIGI VPDV AC+RFE+LGV+FVK
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 150
Query: 92 KPND 95
KP+D
Sbjct: 151 KPDD 154
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDE---DLTYHN 57
+ TM R+ D ++S+ FYTKVLGM LL+ + P K+SL F+G +G E +E +LTY+
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVG-YGPETEEAVIELTYNW 61
Query: 58 GNSD---PRGFGHIGIQVPDVTKACERFEQLG 86
G +GHI + V + +ACE+ Q G
Sbjct: 62 GVDKYELGTAYGHIALSVDNAAEACEKIRQNG 93
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical
Comparison With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical
Comparison With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical
Comparison With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical
Comparison With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical
Comparison With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical
Comparison With The Human Enzyme
Length = 144
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDE---DLTYHN 57
M TM R+ D +S+ FYT+ LGM +L+K D P K++L F+G +G E +LTY+
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLG-YGPEMSSTVLELTYNY 67
Query: 58 GNSDPR---GFGHIGIQVPDV 75
G + + +GHI I V DV
Sbjct: 68 GVTSYKHDEAYGHIAIGVEDV 88
>pdb|2R5V|A Chain A, Hydroxymandelate Synthase Crystal Structure
pdb|2R5V|B Chain B, Hydroxymandelate Synthase Crystal Structure
Length = 357
Score = 29.3 bits (64), Expect = 0.61, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 50 DEDLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKP 93
DE L H G G HI D +A + + GVEF+K P
Sbjct: 228 DEFLKDHQG----AGVQHIAFNSNDAVRAVKALSERGVEFLKTP 267
>pdb|3OA4|A Chain A, Crystal Structure Of Hypothetical Protein Bh1468 From
Bacillus Halodurans C-125
Length = 161
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 15 LPFYTKVLGMSLLKKLDFPAMKFSLYFM--GNWGTEKDEDLTYHNGNS---DPRGFG--H 67
LPFY L + LL D P+ + F+ G E E L+ + + RG G H
Sbjct: 23 LPFYVGSLKLKLLGMEDLPSQGVKIAFLEIGESKIELLEPLSEESPIAKFIQKRGEGIHH 82
Query: 68 IGIQVPDVTKACERFEQLGVEFV 90
I I V + + + ++ GV+ +
Sbjct: 83 IAIGVKSIEERIQEVKENGVQMI 105
>pdb|4HC5|A Chain A, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|B Chain B, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|C Chain C, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|D Chain D, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
Length = 133
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 8 IKDPRKSLPFYTKVLGMSLL--KKLDFPAMKFSLYFMGNWGTEKDEDL-TYHNGNSDPRG 64
+ D K+L FY LG + +LD P +F T+ L +++ P G
Sbjct: 21 VSDQEKALDFYVNTLGFEKVFDNQLD-PNXRFVTVVPPGAQTQVALGLPSWYEDGRKPGG 79
Query: 65 FGHIGIQVPDVTKACERFEQLGVEFVKKP 93
+ I + D+ +A + + GV F K P
Sbjct: 80 YTGISLITRDIDEAYKTLTERGVTFTKPP 108
>pdb|1KMY|A Chain A, Crystal Structure Of 2,3-Dihydroxybiphenyl 1,2-Dioxygenase
Complexed With 2,3-Dihydroxybiphenyl Under Anaerobic
Condition
pdb|1KND|A Chain A, Crystal Structure Of 2,3-Dihydroxybiphenyl 1,2-Dioxygenase
Complexed With Catechol Under Anaerobic Condition
pdb|1KNF|A Chain A, Crystal Structure Of 2,3-Dihydroxybiphenyl 1,2-Dioxygenase
Complexed With 3-Methyl Catechol Under Anaerobic
Condition
pdb|1LGT|A Chain A, Crystal Structure Of 2,3-Dihydroxybiphenyl 1,2-Dioxygenase
(Dhbd) Complexed With 2'-Cl Dihydroxybiphenyl (Dhb)
pdb|1LKD|A Chain A, Crystal Structure Of 2,3-Dihydroxybiphenyl 1,2-Dioxygenase
(Dhbd) Complexed With 2',6'-Dicl Dihydroxybiphenyl (Dhb)
pdb|1HAN|A Chain A, Crystal Structure Of The Biphenyl-Cleaving Extradiol
Dioxygenase From A Pcb-Degrading Pseudomonad
Length = 297
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 8 IKDPRKSLPFYTKVLGMSLLKKLDF---PAMKFSLYFM 42
+ D K+L FYT VLG L +D P + YF+
Sbjct: 150 VPDSDKALAFYTDVLGFQLSDVIDMKMGPDVTVPAYFL 187
>pdb|3OAJ|A Chain A, Crystal Structure Of Putative Dioxygenase From Bacillus
Subtilis Subsp. Subtilis Str. 168
pdb|3OAJ|B Chain B, Crystal Structure Of Putative Dioxygenase From Bacillus
Subtilis Subsp. Subtilis Str. 168
Length = 335
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 8 IKDPRKSLPFYTKVLGMSLLKK---LDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRG 64
+ P+++ FY VLG+ L+K+ D P + LYF GN G + +T+ +G
Sbjct: 16 VGHPQENTDFYAGVLGLRLVKQTVNFDDPGT-YHLYF-GNEGGKPGTIITFFPWAGARQG 73
Query: 65 F---GHIGIQVPDVTKAC-----ERFEQLGVEFVK 91
G +G+ V K +R E+ V + K
Sbjct: 74 VIGDGQVGVTSYVVPKGAMAFWEKRLEKFNVPYTK 108
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 3 QTMYRIKDPRKSLPFYTKVLGM 24
QT+++I D L +YT +LGM
Sbjct: 115 QTLFKIHDKDVPLSYYTGILGM 136
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 56 HNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKPN 94
+NG + G HI ++ D+ A + G+EF+ P+
Sbjct: 251 YNGGA---GVQHIALKTEDIITAIRHLRERGLEFLSVPS 286
>pdb|2WL3|A Chain A, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|B Chain B, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|C Chain C, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|D Chain D, Crystal Structure Of Catechol 2,3-Dioxygenase
Length = 305
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 45 WGTEKDEDLTYHNGN-------SDPRGFGHIGIQVPDVTKACERFEQLGVE 88
+G + D +H G ++ +G GHI I+ DV +A + LG+E
Sbjct: 120 YGPQVDTSSPFHPGRPXFGKFVTEGQGLGHIIIREDDVEEATRFYRLLGLE 170
>pdb|2WL9|A Chain A, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|B Chain B, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|C Chain C, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|D Chain D, Crystal Structure Of Catechol 2,3-Dioxygenase
Length = 305
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 45 WGTEKDEDLTYHNGN-------SDPRGFGHIGIQVPDVTKACERFEQLGVE 88
+G + D +H G ++ +G GHI I+ DV +A + LG+E
Sbjct: 120 YGPQVDTSSPFHPGRPMFGKFVTEGQGLGHIIIREDDVEEATRFYRLLGLE 170
>pdb|3E5P|A Chain A, Crystal Structure Of Alanine Racemase From E.Faecalis
pdb|3E5P|B Chain B, Crystal Structure Of Alanine Racemase From E.Faecalis
pdb|3E5P|C Chain C, Crystal Structure Of Alanine Racemase From E.Faecalis
pdb|3E6E|A Chain A, Crystal Structure Of Alanine Racemase From E.Faecalis
Complex With Cycloserine
pdb|3E6E|B Chain B, Crystal Structure Of Alanine Racemase From E.Faecalis
Complex With Cycloserine
pdb|3E6E|C Chain C, Crystal Structure Of Alanine Racemase From E.Faecalis
Complex With Cycloserine
Length = 371
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 64 GFGHIGIQVPDVTKACERFEQLGVEFV 90
G G IG P+ TK RF Q EF+
Sbjct: 136 GMGRIGFLTPEETKQAVRFVQSHKEFL 162
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 41 FMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPD-VTKACE 80
F WGT D L RGFG + D V + C+
Sbjct: 107 FFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,173,778
Number of Sequences: 62578
Number of extensions: 126952
Number of successful extensions: 233
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 20
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)