Query psy18055
Match_columns 95
No_of_seqs 101 out of 1429
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 21:20:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02367 lactoylglutathione ly 99.8 1.4E-19 3E-24 107.9 10.7 94 1-94 76-199 (233)
2 PLN03042 Lactoylglutathione ly 99.8 1.8E-18 3.9E-23 100.8 10.9 94 1-94 28-151 (185)
3 cd07233 Glyoxalase_I Glyoxalas 99.8 4.2E-17 9.1E-22 88.7 11.7 94 1-94 1-100 (121)
4 cd08342 HPPD_N_like N-terminal 99.7 6.1E-17 1.3E-21 90.3 9.8 93 1-95 1-100 (136)
5 cd08358 Glo_EDI_BRP_like_21 Th 99.7 3.7E-16 8.1E-21 86.2 10.6 92 1-93 3-108 (127)
6 TIGR00068 glyox_I lactoylgluta 99.7 4.1E-16 9E-21 88.2 10.4 93 1-93 18-115 (150)
7 PF13669 Glyoxalase_4: Glyoxal 99.7 1.2E-16 2.6E-21 86.1 7.6 92 2-93 1-97 (109)
8 cd07257 THT_oxygenase_C The C- 99.7 2.7E-16 5.8E-21 89.3 9.2 90 1-93 2-99 (153)
9 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 3.5E-16 7.5E-21 85.4 9.2 93 1-93 2-102 (125)
10 cd07249 MMCE Methylmalonyl-CoA 99.7 2.9E-16 6.3E-21 86.0 8.9 94 1-94 1-102 (128)
11 PRK10291 glyoxalase I; Provisi 99.7 1.1E-15 2.4E-20 84.3 10.0 89 5-93 1-94 (129)
12 cd07250 HPPD_C_like C-terminal 99.7 5.6E-16 1.2E-20 90.9 9.0 94 1-94 4-113 (191)
13 TIGR03081 metmalonyl_epim meth 99.7 5.9E-16 1.3E-20 84.9 8.5 92 1-92 2-100 (128)
14 cd07243 2_3_CTD_C C-terminal d 99.7 1.7E-15 3.8E-20 85.2 10.5 89 1-93 7-99 (143)
15 cd08353 Glo_EDI_BRP_like_7 Thi 99.7 1.2E-15 2.7E-20 85.3 9.8 93 1-94 4-117 (142)
16 PRK11478 putative lyase; Provi 99.7 1E-15 2.2E-20 84.2 9.2 92 1-92 7-103 (129)
17 cd07247 SgaA_N_like N-terminal 99.7 1.3E-15 2.9E-20 82.1 9.1 91 1-94 1-91 (114)
18 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 5.2E-15 1.1E-19 80.6 10.4 94 1-94 4-102 (125)
19 TIGR03645 glyox_marine lactoyl 99.7 2.8E-15 6.2E-20 85.9 9.7 91 1-91 5-120 (162)
20 PLN02300 lactoylglutathione ly 99.7 4.4E-15 9.5E-20 91.8 11.1 94 1-94 25-123 (286)
21 cd07263 Glo_EDI_BRP_like_16 Th 99.6 4.6E-15 1E-19 80.1 9.5 90 3-93 1-96 (119)
22 cd07264 Glo_EDI_BRP_like_15 Th 99.6 8.3E-15 1.8E-19 80.1 10.3 94 1-94 1-101 (125)
23 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 4.1E-15 8.9E-20 79.5 8.0 91 1-94 1-94 (114)
24 KOG2944|consensus 99.6 5.9E-16 1.3E-20 86.5 4.7 95 1-95 23-146 (170)
25 cd08360 MhqB_like_C C-terminal 99.6 1.4E-14 3E-19 80.6 9.7 87 1-93 4-94 (134)
26 cd08343 ED_TypeI_classII_C C-t 99.6 2.1E-14 4.6E-19 79.5 10.4 89 2-94 1-92 (131)
27 cd08355 Glo_EDI_BRP_like_14 Th 99.6 2.9E-14 6.4E-19 77.8 10.5 92 3-94 2-98 (122)
28 cd07237 BphC1-RGP6_C_like C-te 99.6 2.6E-14 5.6E-19 81.3 10.2 90 1-93 10-105 (154)
29 cd09014 BphC-JF8_C_like C-term 99.6 2.8E-14 6.1E-19 82.0 10.4 93 1-94 7-102 (166)
30 cd07256 HPCD_C_class_II C-term 99.6 2.2E-14 4.8E-19 82.1 9.8 84 1-88 4-90 (161)
31 cd07265 2_3_CTD_N N-terminal d 99.6 1.8E-14 4E-19 78.7 9.2 85 1-93 5-93 (122)
32 PF00903 Glyoxalase: Glyoxalas 99.6 2E-15 4.3E-20 82.4 5.1 92 1-93 2-105 (128)
33 PRK06724 hypothetical protein; 99.6 2.6E-14 5.6E-19 79.1 9.3 83 1-94 8-96 (128)
34 cd07258 PpCmtC_C C-terminal do 99.6 4E-14 8.6E-19 79.5 9.6 85 2-94 1-89 (141)
35 cd07252 BphC1-RGP6_N_like N-te 99.6 2.7E-14 5.8E-19 78.0 8.5 84 1-93 3-89 (120)
36 cd08346 PcpA_N_like N-terminal 99.6 7.2E-14 1.6E-18 76.2 9.5 93 1-93 2-105 (126)
37 cd07246 Glo_EDI_BRP_like_8 Thi 99.6 1.2E-13 2.7E-18 75.0 10.2 91 4-94 5-98 (122)
38 cd08347 PcpA_C_like C-terminal 99.6 4.1E-14 8.8E-19 80.8 8.5 87 1-91 2-95 (157)
39 cd07239 BphC5-RK37_C_like C-te 99.6 1E-13 2.2E-18 78.1 9.5 84 1-93 5-91 (144)
40 PRK04101 fosfomycin resistance 99.6 7.9E-14 1.7E-18 78.0 8.8 87 1-93 5-94 (139)
41 cd07262 Glo_EDI_BRP_like_19 Th 99.5 1.4E-13 3E-18 75.1 9.4 89 1-94 1-97 (123)
42 cd07253 Glo_EDI_BRP_like_2 Thi 99.5 9.6E-14 2.1E-18 75.5 8.7 90 1-94 4-98 (125)
43 cd08348 BphC2-C3-RGP6_C_like T 99.5 1.7E-13 3.7E-18 75.9 9.6 89 1-93 2-97 (134)
44 cd07242 Glo_EDI_BRP_like_6 Thi 99.5 2.3E-13 5E-18 74.7 9.9 90 1-94 2-101 (128)
45 TIGR03211 catechol_2_3 catecho 99.5 1.6E-13 3.6E-18 85.2 10.0 91 1-94 146-240 (303)
46 cd08364 FosX FosX, a fosfomyci 99.5 1.3E-13 2.8E-18 76.4 8.5 88 1-92 5-96 (131)
47 COG3324 Predicted enzyme relat 99.5 2.2E-13 4.8E-18 74.7 9.1 93 1-95 10-102 (127)
48 cd09013 BphC-JF8_N_like N-term 99.5 2.1E-13 4.6E-18 74.4 9.1 82 1-91 7-92 (121)
49 PLN02300 lactoylglutathione ly 99.5 2.6E-13 5.6E-18 83.9 10.3 94 1-94 155-253 (286)
50 cd08363 FosB FosB, a fosfomyci 99.5 8.6E-14 1.9E-18 77.2 7.3 87 1-93 1-90 (131)
51 cd07244 FosA FosA, a Fosfomyci 99.5 1.3E-13 2.9E-18 75.3 8.0 86 1-94 2-89 (121)
52 cd08362 BphC5-RrK37_N_like N-t 99.5 1.4E-13 3E-18 74.8 7.9 84 1-93 4-90 (120)
53 cd08361 PpCmtC_N N-terminal do 99.5 1.7E-13 3.7E-18 75.3 8.2 82 1-93 7-91 (124)
54 TIGR02295 HpaD 3,4-dihydroxyph 99.5 2.7E-13 5.8E-18 83.9 10.0 89 1-93 137-230 (294)
55 cd09011 Glo_EDI_BRP_like_23 Th 99.5 1.8E-13 4E-18 74.5 8.2 89 1-94 3-95 (120)
56 cd07255 Glo_EDI_BRP_like_12 Th 99.5 4.7E-13 1E-17 73.2 9.0 86 1-92 3-95 (125)
57 cd07240 ED_TypeI_classII_N N-t 99.5 2.7E-13 5.8E-18 73.3 7.9 84 1-93 3-89 (117)
58 cd08351 ChaP_like ChaP, an enz 99.5 5.1E-13 1.1E-17 73.1 9.0 84 1-94 5-90 (123)
59 cd07266 HPCD_N_class_II N-term 99.5 3E-13 6.6E-18 73.6 7.8 84 1-92 5-91 (121)
60 cd08359 Glo_EDI_BRP_like_22 Th 99.5 9.1E-13 2E-17 71.5 9.4 86 3-94 4-96 (119)
61 cd06587 Glo_EDI_BRP_like This 99.5 1.2E-12 2.5E-17 69.3 9.5 87 3-93 1-90 (112)
62 TIGR01263 4HPPD 4-hydroxypheny 99.5 8.7E-13 1.9E-17 83.7 9.2 94 1-94 159-268 (353)
63 PF12681 Glyoxalase_2: Glyoxal 99.5 2.1E-13 4.6E-18 72.7 5.5 85 6-94 1-86 (108)
64 TIGR03213 23dbph12diox 2,3-dih 99.4 1.9E-12 4E-17 80.0 9.9 88 1-92 143-236 (286)
65 cd07254 Glo_EDI_BRP_like_20 Th 99.4 3.9E-12 8.4E-17 69.2 10.0 85 2-93 3-90 (120)
66 cd07238 Glo_EDI_BRP_like_5 Thi 99.4 4E-12 8.6E-17 68.4 9.7 84 3-94 3-87 (112)
67 cd08357 Glo_EDI_BRP_like_18 Th 99.4 1.8E-12 3.8E-17 70.7 8.4 86 3-94 2-97 (125)
68 cd07267 THT_Oxygenase_N N-term 99.4 2.1E-12 4.5E-17 69.8 8.6 82 1-92 4-85 (113)
69 cd08354 Glo_EDI_BRP_like_13 Th 99.4 2.4E-12 5.1E-17 70.0 8.8 88 1-93 1-98 (122)
70 cd08349 BLMA_like Bleomycin bi 99.4 3.1E-12 6.8E-17 68.5 8.8 84 4-93 2-88 (112)
71 cd08345 Fosfomycin_RP Fosfomyc 99.4 1.4E-12 2.9E-17 70.2 7.2 82 3-92 1-85 (113)
72 cd07235 MRD Mitomycin C resist 99.4 2.8E-12 6.1E-17 69.9 8.0 90 1-94 1-99 (122)
73 cd08344 MhqB_like_N N-terminal 99.4 3.3E-12 7.1E-17 68.9 7.9 82 1-93 3-86 (112)
74 TIGR01263 4HPPD 4-hydroxypheny 99.4 4.6E-12 9.9E-17 80.5 9.6 94 1-95 3-103 (353)
75 TIGR03211 catechol_2_3 catecho 99.4 4.6E-12 9.9E-17 78.8 8.5 84 1-93 5-92 (303)
76 TIGR02295 HpaD 3,4-dihydroxyph 99.4 7.4E-12 1.6E-16 77.5 9.3 85 1-93 5-92 (294)
77 cd09012 Glo_EDI_BRP_like_24 Th 99.4 6.5E-12 1.4E-16 68.8 7.4 90 1-94 1-101 (124)
78 cd07261 Glo_EDI_BRP_like_11 Th 99.4 1.1E-11 2.3E-16 66.9 8.1 86 4-94 2-92 (114)
79 TIGR03213 23dbph12diox 2,3-dih 99.3 8.5E-12 1.8E-16 77.1 7.7 84 1-93 4-90 (286)
80 cd08350 BLMT_like BLMT, a bleo 99.3 2.3E-11 5E-16 66.3 8.4 79 3-89 5-83 (120)
81 PLN02875 4-hydroxyphenylpyruva 99.3 2.4E-11 5.1E-16 77.9 7.6 93 1-93 181-295 (398)
82 cd08356 Glo_EDI_BRP_like_17 Th 99.3 4.1E-11 8.9E-16 64.8 6.6 77 4-90 5-81 (113)
83 cd07251 Glo_EDI_BRP_like_10 Th 99.2 1.6E-10 3.4E-15 62.6 7.5 86 4-94 2-97 (121)
84 KOG0638|consensus 99.1 3.8E-10 8.3E-15 69.8 6.8 90 1-94 18-121 (381)
85 COG3565 Predicted dioxygenase 99.1 4.7E-10 1E-14 60.1 6.0 87 2-94 6-101 (138)
86 COG2764 PhnB Uncharacterized p 99.1 4.9E-09 1.1E-13 58.4 9.0 91 5-95 5-108 (136)
87 cd06588 PhnB_like Escherichia 99.0 1.9E-08 4.1E-13 55.5 9.5 89 4-94 3-106 (128)
88 COG3185 4-hydroxyphenylpyruvat 98.9 3E-09 6.4E-14 66.7 6.0 94 1-94 168-275 (363)
89 KOG2943|consensus 98.9 4.5E-09 9.7E-14 63.0 4.7 86 1-86 18-119 (299)
90 PLN02875 4-hydroxyphenylpyruva 98.8 1.9E-08 4.1E-13 64.8 7.3 94 1-94 1-122 (398)
91 PF13468 Glyoxalase_3: Glyoxal 98.8 2.5E-08 5.4E-13 57.8 6.5 88 1-88 1-101 (175)
92 KOG2943|consensus 98.8 9.9E-09 2.1E-13 61.5 4.0 88 2-93 151-241 (299)
93 COG2514 Predicted ring-cleavag 98.7 2E-07 4.2E-12 56.8 7.9 83 2-90 12-100 (265)
94 PRK01037 trmD tRNA (guanine-N( 98.6 4.2E-07 9E-12 57.5 6.7 82 2-94 249-333 (357)
95 COG0346 GloA Lactoylglutathion 98.5 1.4E-07 3.1E-12 50.9 3.2 31 1-31 3-33 (138)
96 COG3607 Predicted lactoylgluta 98.5 7.1E-07 1.5E-11 48.7 5.5 89 3-95 6-105 (133)
97 PF14696 Glyoxalase_5: Hydroxy 98.1 9.2E-06 2E-10 45.6 5.3 87 1-93 10-102 (139)
98 PRK10148 hypothetical protein; 98.1 0.00016 3.5E-09 41.0 9.8 89 4-94 5-117 (147)
99 KOG0638|consensus 98.1 1.7E-06 3.7E-11 54.0 1.8 94 1-94 179-292 (381)
100 COG2514 Predicted ring-cleavag 98.1 2.2E-05 4.8E-10 48.1 6.3 29 1-29 169-197 (265)
101 PF14506 CppA_N: CppA N-termin 97.8 0.00045 9.7E-09 37.7 7.3 70 2-77 2-76 (125)
102 PF06983 3-dmu-9_3-mt: 3-demet 96.9 0.019 4.2E-07 31.3 7.3 76 9-87 11-97 (116)
103 COG3185 4-hydroxyphenylpyruvat 96.3 0.037 8.1E-07 35.7 6.9 87 1-93 23-116 (363)
104 PF13669 Glyoxalase_4: Glyoxal 94.8 0.029 6.3E-07 29.8 2.2 29 1-30 69-97 (109)
105 PF14507 CppA_C: CppA C-termin 94.3 0.022 4.8E-07 30.3 1.0 69 2-86 7-78 (101)
106 PF06185 YecM: YecM protein; 94.1 0.57 1.2E-05 27.8 6.5 74 1-74 35-115 (185)
107 PF15067 FAM124: FAM124 family 93.7 0.4 8.7E-06 29.4 5.6 75 3-81 131-210 (236)
108 cd04882 ACT_Bt0572_2 C-termina 93.5 0.25 5.5E-06 23.3 3.9 27 64-90 39-65 (65)
109 PRK11700 hypothetical protein; 93.4 0.65 1.4E-05 27.6 6.0 73 1-74 40-120 (187)
110 cd04883 ACT_AcuB C-terminal AC 92.3 0.49 1.1E-05 22.9 4.0 29 64-92 41-71 (72)
111 cd08353 Glo_EDI_BRP_like_7 Thi 91.8 0.45 9.6E-06 26.2 3.9 29 64-92 3-31 (142)
112 cd07268 Glo_EDI_BRP_like_4 Thi 91.6 1.6 3.5E-05 25.0 7.5 72 1-73 2-81 (149)
113 KOG2944|consensus 90.9 0.24 5.1E-06 28.7 2.1 29 1-30 116-144 (170)
114 TIGR03645 glyox_marine lactoyl 90.7 0.78 1.7E-05 26.2 4.2 28 63-90 3-31 (162)
115 PRK11478 putative lyase; Provi 89.0 1.7 3.7E-05 23.3 4.6 26 2-28 77-102 (129)
116 cd08344 MhqB_like_N N-terminal 88.9 0.91 2E-05 23.9 3.4 28 64-91 2-29 (112)
117 cd04906 ACT_ThrD-I_1 First of 88.1 1.4 3.1E-05 22.4 3.7 26 66-91 42-71 (85)
118 cd08352 Glo_EDI_BRP_like_1 Thi 87.5 1.6 3.4E-05 23.0 3.9 28 64-91 3-31 (125)
119 PLN02367 lactoylglutathione ly 87.3 2.1 4.6E-05 26.4 4.6 29 1-30 170-198 (233)
120 cd08342 HPPD_N_like N-terminal 87.0 2.1 4.6E-05 23.5 4.2 42 2-44 71-112 (136)
121 cd07252 BphC1-RGP6_N_like N-te 86.8 2 4.4E-05 22.9 4.0 29 64-92 2-31 (120)
122 COG4747 ACT domain-containing 86.6 0.96 2.1E-05 25.0 2.6 29 64-92 108-136 (142)
123 cd07242 Glo_EDI_BRP_like_6 Thi 86.5 1.7 3.7E-05 23.3 3.6 29 64-92 1-33 (128)
124 cd07253 Glo_EDI_BRP_like_2 Thi 86.4 2.2 4.7E-05 22.4 4.0 30 64-93 3-33 (125)
125 cd08347 PcpA_C_like C-terminal 85.9 1.8 3.8E-05 24.7 3.6 28 64-91 1-29 (157)
126 KOG4657|consensus 85.9 0.57 1.2E-05 28.6 1.6 22 9-30 145-166 (246)
127 cd07267 THT_Oxygenase_N N-term 85.8 1.8 3.8E-05 22.9 3.4 28 64-91 3-30 (113)
128 cd04885 ACT_ThrD-I Tandem C-te 85.2 2.2 4.8E-05 20.6 3.3 24 67-90 41-67 (68)
129 cd07237 BphC1-RGP6_C_like C-te 84.7 3.5 7.5E-05 23.3 4.4 28 63-90 8-36 (154)
130 PF02208 Sorb: Sorbin homologo 83.0 0.44 9.6E-06 21.5 0.2 20 4-23 15-34 (47)
131 cd07256 HPCD_C_class_II C-term 82.4 3.5 7.5E-05 23.5 3.8 28 63-90 2-30 (161)
132 PLN03042 Lactoylglutathione ly 82.2 4.7 0.0001 23.9 4.4 28 1-29 122-149 (185)
133 COG3603 Uncharacterized conser 77.6 3.7 8.1E-05 22.7 2.7 25 66-90 103-127 (128)
134 cd04908 ACT_Bt0572_1 N-termina 76.7 6.7 0.00015 18.7 3.9 25 66-90 41-65 (66)
135 PF07063 DUF1338: Domain of un 76.1 4.4 9.6E-05 26.0 3.1 27 64-90 184-216 (302)
136 cd04909 ACT_PDH-BS C-terminal 73.2 4.6 0.0001 19.3 2.2 24 66-89 43-69 (69)
137 COG3865 Uncharacterized protei 71.7 17 0.00036 20.9 7.5 76 9-87 14-103 (151)
138 PF00585 Thr_dehydrat_C: C-ter 66.6 12 0.00025 19.5 3.0 28 64-91 50-80 (91)
139 PF02174 IRS: PTB domain (IRS- 60.8 23 0.00051 18.6 3.7 31 54-84 63-93 (100)
140 cd04886 ACT_ThrD-II-like C-ter 58.4 19 0.00041 16.8 3.9 24 67-90 46-72 (73)
141 PF14044 NETI: NETI protein 57.4 20 0.00044 17.1 2.6 22 70-91 2-26 (57)
142 PF13176 TPR_7: Tetratricopept 57.2 5.3 0.00012 16.6 0.6 17 8-24 12-28 (36)
143 PF03979 Sigma70_r1_1: Sigma-7 55.4 4.6 0.0001 20.5 0.3 23 70-92 36-58 (82)
144 TIGR03515 GldC gliding motilit 55.3 7.1 0.00015 21.1 1.0 21 3-23 52-74 (108)
145 PF13225 DUF4033: Domain of un 54.4 21 0.00045 18.6 2.5 27 14-40 49-75 (86)
146 PF03698 UPF0180: Uncharacteri 54.2 26 0.00056 18.0 2.9 21 71-91 5-26 (80)
147 PF11823 DUF3343: Protein of u 50.9 25 0.00054 17.2 2.5 24 67-90 44-67 (73)
148 COG0456 RimI Acetyltransferase 50.4 32 0.00068 19.4 3.2 27 3-30 128-155 (177)
149 PF01624 MutS_I: MutS domain I 47.7 37 0.0008 18.2 3.0 26 65-90 56-81 (113)
150 COG4009 Uncharacterized protei 47.6 20 0.00044 18.4 1.8 25 67-91 52-78 (88)
151 cd01203 DOK_PTB Downstream of 47.5 46 0.001 18.0 3.5 32 53-84 61-92 (104)
152 COG1654 BirA Biotin operon rep 47.3 30 0.00066 17.6 2.5 28 67-94 28-55 (79)
153 PF01393 Chromo_shadow: Chromo 44.2 9.4 0.0002 18.2 0.3 15 11-25 43-57 (58)
154 cd04907 ACT_ThrD-I_2 Second of 42.5 48 0.001 16.8 3.4 26 66-91 43-70 (81)
155 smart00300 ChSh Chromo Shadow 42.2 14 0.0003 17.7 0.8 17 8-24 43-59 (61)
156 PRK03094 hypothetical protein; 41.4 39 0.00084 17.4 2.3 17 74-90 9-25 (80)
157 cd00034 ChSh Chromo Shadow Dom 41.3 17 0.00037 16.9 1.0 17 8-24 37-53 (54)
158 PF05166 YcgL: YcgL domain; I 40.7 35 0.00076 17.2 2.1 21 73-93 53-73 (74)
159 PF07862 Nif11: Nitrogen fixat 39.7 39 0.00084 15.1 2.1 19 72-90 26-44 (49)
160 PF11829 DUF3349: Protein of u 38.9 19 0.00041 19.1 1.0 20 73-92 76-95 (96)
161 smart00459 Sorb Sorbin homolog 37.9 18 0.0004 16.7 0.8 14 10-23 24-37 (50)
162 COG3102 Uncharacterized protei 37.6 29 0.00062 20.6 1.7 23 1-23 40-62 (185)
163 KOG2465|consensus 37.2 34 0.00074 22.4 2.1 21 65-85 169-189 (390)
164 PHA03397 vlf-1 very late expre 37.1 16 0.00035 24.2 0.7 17 10-26 124-140 (363)
165 COG3019 Predicted metal-bindin 36.3 78 0.0017 18.2 3.2 25 67-91 28-55 (149)
166 cd00824 PTBI IRS-like phosphot 35.5 76 0.0016 17.1 3.9 30 53-82 61-90 (104)
167 PF04761 Phage_Treg: Lactococc 35.0 20 0.00043 16.6 0.6 12 12-23 16-27 (57)
168 PF00919 UPF0004: Uncharacteri 34.7 48 0.001 17.5 2.2 21 74-94 15-35 (98)
169 PF08445 FR47: FR47-like prote 34.5 68 0.0015 16.2 3.1 21 8-29 62-82 (86)
170 PF07485 DUF1529: Domain of Un 34.5 47 0.001 18.5 2.2 25 66-90 61-85 (123)
171 cd04884 ACT_CBS C-terminal ACT 34.1 60 0.0013 15.5 3.5 23 68-90 2-28 (72)
172 PRK07334 threonine dehydratase 34.0 91 0.002 20.9 3.8 24 67-90 374-400 (403)
173 PRK08198 threonine dehydratase 34.0 92 0.002 20.8 3.8 24 67-90 375-401 (404)
174 COG0189 RimK Glutathione synth 33.5 1.2E+02 0.0027 19.7 4.2 39 5-43 137-175 (318)
175 cd07963 Anticodon_Ia_Cys Antic 33.5 56 0.0012 18.5 2.5 20 75-94 131-150 (156)
176 PF08029 HisG_C: HisG, C-termi 33.4 70 0.0015 16.1 3.1 22 67-88 44-65 (75)
177 TIGR00288 conserved hypothetic 32.9 1.1E+02 0.0023 18.0 3.8 27 64-90 105-133 (160)
178 PF14359 DUF4406: Domain of un 32.8 66 0.0014 16.8 2.5 20 74-93 17-36 (92)
179 PF11782 DUF3319: Protein of u 32.8 22 0.00047 18.6 0.6 13 10-22 36-48 (88)
180 PF05818 TraT: Enterobacterial 31.4 51 0.0011 20.3 2.1 19 76-94 40-58 (215)
181 PF12512 DUF3717: Protein of u 31.0 9.3 0.0002 19.1 -0.9 16 5-20 3-18 (71)
182 PF08821 CGGC: CGGC domain; I 30.8 61 0.0013 17.5 2.2 22 71-92 83-105 (107)
183 smart00310 PTBI Phosphotyrosin 30.6 93 0.002 16.6 3.8 32 53-84 60-91 (98)
184 COG5470 Uncharacterized conser 30.6 47 0.001 17.7 1.7 18 2-19 54-71 (96)
185 cd02429 PTH2_like Peptidyl-tRN 30.1 1E+02 0.0022 17.0 3.6 25 64-88 54-81 (116)
186 TIGR03798 ocin_TIGR03798 bacte 29.7 66 0.0014 15.3 2.0 19 72-90 24-42 (64)
187 PF02709 Glyco_transf_7C: N-te 29.5 72 0.0016 16.0 2.2 18 77-94 50-67 (78)
188 PRK10975 TDP-fucosamine acetyl 29.5 1.2E+02 0.0026 17.6 3.6 26 3-29 162-188 (194)
189 PHA02503 putative transcriptio 29.5 28 0.0006 16.1 0.6 11 12-22 16-26 (57)
190 COG0386 BtuE Glutathione perox 29.3 79 0.0017 18.6 2.5 21 74-94 45-65 (162)
191 PRK13757 chloramphenicol acety 29.2 68 0.0015 19.7 2.4 23 67-89 32-55 (219)
192 COG0011 Uncharacterized conser 29.0 85 0.0018 16.9 2.5 20 75-94 23-42 (100)
193 PF07045 DUF1330: Protein of u 29.0 47 0.001 15.8 1.5 17 4-20 42-58 (65)
194 PF15569 Imm21: Immunity prote 28.7 58 0.0013 17.2 1.8 29 64-92 6-34 (91)
195 PF01535 PPR: PPR repeat; Int 28.6 39 0.00084 12.6 1.0 14 74-87 18-31 (31)
196 PF08285 DPM3: Dolichol-phosph 28.6 43 0.00093 17.6 1.3 16 74-89 76-91 (91)
197 PF00302 CAT: Chloramphenicol 28.5 54 0.0012 19.9 1.9 24 66-89 26-50 (206)
198 PF01910 DUF77: Domain of unkn 28.4 70 0.0015 16.7 2.1 20 75-94 19-38 (92)
199 PF02829 3H: 3H domain; Inter 27.9 1.1E+02 0.0023 16.4 3.3 25 64-88 70-97 (98)
200 COG2257 Uncharacterized homolo 27.8 55 0.0012 17.3 1.6 19 75-93 34-52 (92)
201 smart00671 SEL1 Sel1-like repe 27.2 38 0.00083 13.3 0.9 13 9-21 19-31 (36)
202 TIGR00106 uncharacterized prot 26.7 1E+02 0.0022 16.3 2.6 20 75-94 21-40 (97)
203 PTZ00330 acetyltransferase; Pr 26.7 1.1E+02 0.0023 16.5 2.8 23 4-29 119-141 (147)
204 cd01202 FRS2 Fibroblast growth 26.3 1.2E+02 0.0026 16.4 3.9 32 53-84 59-90 (102)
205 PF08915 tRNA-Thr_ED: Archaea- 26.2 86 0.0019 17.9 2.3 20 75-94 97-116 (138)
206 PF09741 DUF2045: Uncharacteri 26.0 33 0.00072 21.4 0.7 20 64-83 132-151 (237)
207 PHA00212 putative transcriptio 25.9 34 0.00075 16.1 0.6 11 12-22 18-28 (63)
208 PF13523 Acetyltransf_8: Acety 25.9 1.3E+02 0.0027 16.5 4.1 33 3-36 115-148 (152)
209 TIGR00318 cyaB adenylyl cyclas 25.5 1E+02 0.0022 17.9 2.7 23 68-90 6-28 (174)
210 PF13280 WYL: WYL domain 25.5 1.2E+02 0.0026 16.8 3.0 28 66-93 129-158 (172)
211 PF11001 DUF2841: Protein of u 25.5 26 0.00057 19.6 0.2 18 6-23 1-18 (126)
212 smart00733 Mterf Mitochondrial 25.3 21 0.00045 13.4 -0.2 16 8-24 15-30 (31)
213 PRK10140 putative acetyltransf 25.2 1.3E+02 0.0028 16.5 3.4 26 3-29 115-141 (162)
214 PF11848 DUF3368: Domain of un 25.0 72 0.0016 14.3 1.6 17 74-90 20-36 (48)
215 PF00515 TPR_1: Tetratricopept 24.9 37 0.0008 13.3 0.6 16 9-24 15-30 (34)
216 smart00642 Aamy Alpha-amylase 24.9 59 0.0013 18.8 1.6 20 73-92 70-89 (166)
217 KOG2582|consensus 24.8 47 0.001 22.4 1.3 25 3-27 191-215 (422)
218 COG3100 Uncharacterized protei 24.3 1.2E+02 0.0027 16.1 2.5 22 73-94 65-86 (103)
219 PRK10314 putative acyltransfer 24.2 85 0.0018 17.7 2.1 17 12-29 118-134 (153)
220 PRK04781 histidinol-phosphate 24.0 1.9E+02 0.0042 18.8 4.0 26 66-91 304-329 (364)
221 PF08373 RAP: RAP domain; Int 24.0 79 0.0017 14.4 1.7 16 78-93 23-38 (58)
222 PF13181 TPR_8: Tetratricopept 23.9 42 0.00092 13.0 0.7 16 9-24 15-30 (34)
223 PF13986 DUF4224: Domain of un 23.8 88 0.0019 14.1 2.0 18 77-94 19-36 (47)
224 PHA01735 hypothetical protein 23.5 89 0.0019 15.6 1.8 21 72-92 32-52 (76)
225 KOG3111|consensus 23.4 1.9E+02 0.0042 17.8 3.7 27 64-90 87-116 (224)
226 PRK08526 threonine dehydratase 23.4 1.8E+02 0.0039 19.6 3.8 26 67-92 374-402 (403)
227 PF09145 Ubiq-assoc: Ubiquitin 23.0 50 0.0011 14.9 0.8 12 10-21 19-30 (46)
228 COG4004 Uncharacterized protei 22.9 1.3E+02 0.0028 16.0 2.4 20 73-92 12-31 (96)
229 PLN00139 hypothetical protein; 22.8 81 0.0018 20.6 2.0 25 69-93 194-218 (320)
230 KOG4285|consensus 22.7 18 0.00038 23.5 -0.9 23 6-28 187-209 (350)
231 PF03793 PASTA: PASTA domain; 22.7 99 0.0021 14.2 3.0 16 74-89 10-25 (63)
232 PRK08639 threonine dehydratase 22.5 1.8E+02 0.0038 19.7 3.6 25 67-91 381-408 (420)
233 TIGR00756 PPR pentatricopeptid 22.4 56 0.0012 12.3 0.9 16 74-89 18-33 (35)
234 COG2804 PulE Type II secretory 22.2 1.3E+02 0.0027 21.2 2.9 25 65-89 351-378 (500)
235 KOG3235|consensus 22.0 1.2E+02 0.0026 18.0 2.4 27 3-29 108-135 (193)
236 KOG0081|consensus 21.8 79 0.0017 18.8 1.7 17 14-30 84-100 (219)
237 cd04795 SIS SIS domain. SIS (S 21.7 74 0.0016 15.5 1.4 18 73-90 61-78 (87)
238 PF07719 TPR_2: Tetratricopept 21.7 46 0.001 12.8 0.6 17 8-24 14-30 (34)
239 PF00594 Gla: Vitamin K-depend 21.5 50 0.0011 14.5 0.7 14 10-23 29-42 (42)
240 cd03027 GRX_DEP Glutaredoxin ( 21.3 1.1E+02 0.0024 14.5 2.0 17 73-89 12-28 (73)
241 COG2160 AraA L-arabinose isome 21.2 2.2E+02 0.0048 19.7 3.7 28 64-91 444-472 (497)
242 TIGR02079 THD1 threonine dehyd 21.1 2E+02 0.0043 19.4 3.6 24 67-90 370-396 (409)
243 PF07927 YcfA: YcfA-like prote 20.7 1.1E+02 0.0023 13.8 2.2 16 76-91 2-17 (56)
244 cd03413 CbiK_C Anaerobic cobal 20.7 1.2E+02 0.0026 16.1 2.2 18 74-91 80-97 (103)
245 COG1433 Uncharacterized conser 20.7 1.4E+02 0.003 16.6 2.4 28 67-94 67-94 (121)
246 cd04880 ACT_AAAH-PDT-like ACT 20.7 1.2E+02 0.0026 14.5 3.4 23 68-90 2-28 (75)
247 PF13653 GDPD_2: Glycerophosph 20.6 86 0.0019 12.7 2.1 22 68-89 2-23 (30)
248 PF13812 PPR_3: Pentatricopept 20.5 76 0.0016 12.1 1.7 14 75-88 20-33 (34)
249 COG3622 Hfi Hydroxypyruvate is 20.5 65 0.0014 20.4 1.2 22 73-94 124-145 (260)
250 TIGR03884 sel_bind_Methan sele 20.5 1.4E+02 0.003 15.1 2.6 18 67-84 19-36 (74)
251 PF14149 YhfH: YhfH-like prote 20.5 56 0.0012 14.1 0.7 8 13-20 3-10 (37)
252 COG2179 Predicted hydrolase of 20.4 79 0.0017 18.8 1.5 17 74-90 50-66 (175)
253 PF07576 BRAP2: BRCA1-associat 20.3 1.2E+02 0.0026 16.5 2.1 24 5-28 58-81 (110)
254 TIGR03455 HisG_C-term ATP phos 20.3 88 0.0019 16.6 1.6 16 73-88 74-89 (100)
No 1
>PLN02367 lactoylglutathione lyase
Probab=99.83 E-value=1.4e-19 Score=107.88 Aligned_cols=94 Identities=74% Similarity=1.227 Sum_probs=72.3
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCC-----------------Cccceee--ccc-----
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWG-----------------TEKDEDL--TYH----- 56 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~--~~~----- 56 (95)
|+|++|+|+|+++|++||+++|||++..+...+++.+.+++++..+ .....++ .+.
T Consensus 76 ~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~~~ 155 (233)
T PLN02367 76 MQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTESDP 155 (233)
T ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCccc
Confidence 5899999999999999999999999999888888888888875211 0111112 111
Q ss_pred ------CCCCCCCCcceEEEEeCCHHHHHHHHHHcCCeeecCCC
Q psy18055 57 ------NGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 57 ------~~~~~~~g~~~i~f~v~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
.++..+.|.+|++|.|+|+++++++|+++|+++..+|.
T Consensus 156 ~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~ 199 (233)
T PLN02367 156 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPN 199 (233)
T ss_pred cchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCc
Confidence 11222357789999999999999999999999998774
No 2
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.80 E-value=1.8e-18 Score=100.80 Aligned_cols=94 Identities=73% Similarity=1.212 Sum_probs=68.9
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCC-----------------ccceeeccc-------
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGT-----------------EKDEDLTYH------- 56 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~------- 56 (95)
++|++|+|+|+++|++||+++|||++..+...+...+++++++.... .....+...
T Consensus 28 ~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~~p 107 (185)
T PLN03042 28 MQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTESDP 107 (185)
T ss_pred EEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcccc
Confidence 58999999999999999999999999888766666677777641110 011111111
Q ss_pred ------CCCCCCCCcceEEEEeCCHHHHHHHHHHcCCeeecCCC
Q psy18055 57 ------NGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 57 ------~~~~~~~g~~~i~f~v~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
.++..+.|..|++|.|+|+++++++|+++|+++...|.
T Consensus 108 ~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~ 151 (185)
T PLN03042 108 EFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPD 151 (185)
T ss_pred cccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCc
Confidence 01111246779999999999999999999999987664
No 3
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.76 E-value=4.2e-17 Score=88.71 Aligned_cols=94 Identities=50% Similarity=0.834 Sum_probs=66.8
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCC--CccceeecccCCC----CCCCCcceEEEEeCC
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWG--TEKDEDLTYHNGN----SDPRGFGHIGIQVPD 74 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~g~~~i~f~v~d 74 (95)
|+|++|.|+|++++++||+++||+++......+++.+..+++...+ ...........+. ....+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 6899999999999999999999999887755444445555655332 1111111111111 111244699999999
Q ss_pred HHHHHHHHHHcCCeeecCCC
Q psy18055 75 VTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 75 ~~~~~~~l~~~G~~~~~~p~ 94 (95)
+++++++++++|+++..+|.
T Consensus 81 id~~~~~l~~~G~~~~~~~~ 100 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPG 100 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCc
Confidence 99999999999999998875
No 4
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.74 E-value=6.1e-17 Score=90.26 Aligned_cols=93 Identities=13% Similarity=0.209 Sum_probs=63.0
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeeccc-CC------CCCCCCcceEEEEeC
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYH-NG------NSDPRGFGHIGIQVP 73 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~i~f~v~ 73 (95)
++|++|.|+|+++|++||+++|||++..+...++ ....++...+.......... .+ .....+..|++|.|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~ 78 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVD 78 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeC
Confidence 6899999999999999999999999887653321 22333332221111100000 00 001234559999999
Q ss_pred CHHHHHHHHHHcCCeeecCCCC
Q psy18055 74 DVTKACERFEQLGVEFVKKPND 95 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~p~~ 95 (95)
|+++++++++++|++++.+|..
T Consensus 79 Dvda~~~~l~~~G~~v~~~p~~ 100 (136)
T cd08342 79 DAAAAYERAVARGAKPVQEPVE 100 (136)
T ss_pred CHHHHHHHHHHcCCeEccCcee
Confidence 9999999999999999998863
No 5
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=3.7e-16 Score=86.23 Aligned_cols=92 Identities=22% Similarity=0.356 Sum_probs=62.0
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCC-----------CceEEEeecCC--CCccceeecccCCCC-CCCCcc
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPA-----------MKFSLYFMGNW--GTEKDEDLTYHNGNS-DPRGFG 66 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~g~~ 66 (95)
+.|++|.|+|+++|++||+++|||++.++..++. +.+..++++.. .......+....+.. -+.|.+
T Consensus 3 ~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~~ 82 (127)
T cd08358 3 ALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGND 82 (127)
T ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCCC
Confidence 5799999999999999999999999887765554 34444445321 122222233222211 123345
Q ss_pred eEEEEeCCHHHHHHHHHHcCCeeecCC
Q psy18055 67 HIGIQVPDVTKACERFEQLGVEFVKKP 93 (95)
Q Consensus 67 ~i~f~v~d~~~~~~~l~~~G~~~~~~p 93 (95)
|++|.+++. ++.++|+++|+++...|
T Consensus 83 ~~hlav~~~-d~~~~l~~~Gv~~~~~~ 108 (127)
T cd08358 83 FLGITIHSK-QAVSNAKKHNWPVTEVE 108 (127)
T ss_pred EEEEEEECH-HHHHHHHHCCCceecCC
Confidence 888888887 56699999999988766
No 6
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.71 E-value=4.1e-16 Score=88.19 Aligned_cols=93 Identities=52% Similarity=0.788 Sum_probs=64.1
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccc--eeecccCC-C--CCCCCcceEEEEeCCH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKD--EDLTYHNG-N--SDPRGFGHIGIQVPDV 75 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~--~~~~g~~~i~f~v~d~ 75 (95)
++||+|.|+|+++|++||+++|||++......+.....+++++..+.... .......+ . ....+..|++|.|+|+
T Consensus 18 i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f~v~dl 97 (150)
T TIGR00068 18 LLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAIGVDDV 97 (150)
T ss_pred EEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEEecCCH
Confidence 57999999999999999999999998766543444344455542211111 11111111 0 1123456999999999
Q ss_pred HHHHHHHHHcCCeeecCC
Q psy18055 76 TKACERFEQLGVEFVKKP 93 (95)
Q Consensus 76 ~~~~~~l~~~G~~~~~~p 93 (95)
++++++|+++|++++.+|
T Consensus 98 d~~~~~l~~~G~~~~~~~ 115 (150)
T TIGR00068 98 YKACERVRALGGNVVREP 115 (150)
T ss_pred HHHHHHHHHcCCccccCC
Confidence 999999999999998776
No 7
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.70 E-value=1.2e-16 Score=86.11 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=65.5
Q ss_pred ceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCC--CccceeecccCCC---CCCCCcceEEEEeCCHH
Q psy18055 2 QQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWG--TEKDEDLTYHNGN---SDPRGFGHIGIQVPDVT 76 (95)
Q Consensus 2 ~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~g~~~i~f~v~d~~ 76 (95)
+||++.|+|++++++||+++||+.+......+.......++...+ ...+...+...+. ....|..||+|+|+|++
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D~d 80 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPLDRGGGGIHHIAFEVDDLD 80 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHHHHTSSEEEEEEEEESHHH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcccccCCCCEEEEEEEeCCHH
Confidence 699999999999999999999999877665555555555544333 2233323222221 02245679999999999
Q ss_pred HHHHHHHHcCCeeecCC
Q psy18055 77 KACERFEQLGVEFVKKP 93 (95)
Q Consensus 77 ~~~~~l~~~G~~~~~~p 93 (95)
+..++|+++|++++.++
T Consensus 81 ~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 81 AAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHTTECEEECE
T ss_pred HHHHHHHHCCCEEcccC
Confidence 99999999999987653
No 8
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.70 E-value=2.7e-16 Score=89.34 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=61.9
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCC-CCceEEEeecCCCC----ccceeecccCCCCCCCCcceEEEEeCCH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFP-AMKFSLYFMGNWGT----EKDEDLTYHNGNSDPRGFGHIGIQVPDV 75 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~i~f~v~d~ 75 (95)
++||+|.|+|+++|++||+++||+++......+ .......++...+. ..+. .....+. ..+..|+||.|+|+
T Consensus 2 i~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~~--~~g~~Hiaf~v~di 78 (153)
T cd07257 2 LGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHT-LALAQGP--ESGVHHAAFEVHDF 78 (153)
T ss_pred ccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchH-HHHhcCC--CCceeEEEEEcCCH
Confidence 689999999999999999999999987664433 12223444432111 1111 1111111 34677999999999
Q ss_pred HHHH---HHHHHcCCeeecCC
Q psy18055 76 TKAC---ERFEQLGVEFVKKP 93 (95)
Q Consensus 76 ~~~~---~~l~~~G~~~~~~p 93 (95)
+++. ++|+++|+++..+|
T Consensus 79 e~~~~~~~~L~~~Gv~v~~~~ 99 (153)
T cd07257 79 DAQGLGHDYLREKGYEHVWGV 99 (153)
T ss_pred HHHHHHHHHHHHCCCcEeecC
Confidence 9886 99999999998665
No 9
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=3.5e-16 Score=85.38 Aligned_cols=93 Identities=19% Similarity=0.310 Sum_probs=60.9
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCC-Cccceeec-c-cCC--CCCCCCcceEEEEeC--
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWG-TEKDEDLT-Y-HNG--NSDPRGFGHIGIQVP-- 73 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~--~~~~~g~~~i~f~v~-- 73 (95)
++|++|.|+|+++|++||+++|||++......+...+...++...+ ........ . ... .....|..|++|.|+
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~v~~~ 81 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSPNEGERTGWAHLAFSVGSK 81 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCcccCCCCceEEEEEECCCH
Confidence 5899999999999999999999999865433222223333443211 11111100 0 000 111245679999996
Q ss_pred -CHHHHHHHHHHcCCeeecCC
Q psy18055 74 -DVTKACERFEQLGVEFVKKP 93 (95)
Q Consensus 74 -d~~~~~~~l~~~G~~~~~~p 93 (95)
|+++++++|+++|+++..+|
T Consensus 82 ~~v~~~~~~l~~~g~~~~~~~ 102 (125)
T cd07241 82 EAVDELTERLRADGYLIIGEP 102 (125)
T ss_pred HHHHHHHHHHHHCCCEEEeCc
Confidence 48999999999999998866
No 10
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.70 E-value=2.9e-16 Score=86.00 Aligned_cols=94 Identities=19% Similarity=0.355 Sum_probs=64.8
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCC-CCceEEEeecCCCCccceeecccCC-------CCCCCCcceEEEEe
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFP-AMKFSLYFMGNWGTEKDEDLTYHNG-------NSDPRGFGHIGIQV 72 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~i~f~v 72 (95)
++||+|.|+|++++++||+++||+++......+ .......++...+............ .....+..|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 689999999999999999999999998765432 2333444544322111111110000 01124556999999
Q ss_pred CCHHHHHHHHHHcCCeeecCCC
Q psy18055 73 PDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
+|+++++++++++|+++..+|.
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~ 102 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGP 102 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCC
Confidence 9999999999999999998875
No 11
>PRK10291 glyoxalase I; Provisional
Probab=99.68 E-value=1.1e-15 Score=84.34 Aligned_cols=89 Identities=36% Similarity=0.631 Sum_probs=61.1
Q ss_pred EEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCc--cceeecccCC-CC--CCCCcceEEEEeCCHHHHH
Q psy18055 5 MYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTE--KDEDLTYHNG-NS--DPRGFGHIGIQVPDVTKAC 79 (95)
Q Consensus 5 ~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~--~~~g~~~i~f~v~d~~~~~ 79 (95)
+|.|+|+++|++||+++|||++......+...+.+++++..+.. .........+ .. ...+..|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 58899999999999999999987765545555566666432211 1111111111 11 1124569999999999999
Q ss_pred HHHHHcCCeeecCC
Q psy18055 80 ERFEQLGVEFVKKP 93 (95)
Q Consensus 80 ~~l~~~G~~~~~~p 93 (95)
++|+++|+++..+|
T Consensus 81 ~~l~~~G~~~~~~~ 94 (129)
T PRK10291 81 EKIRQNGGNVTREA 94 (129)
T ss_pred HHHHHcCCccccCC
Confidence 99999999988765
No 12
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.68 E-value=5.6e-16 Score=90.92 Aligned_cols=94 Identities=19% Similarity=0.314 Sum_probs=65.0
Q ss_pred CceeEEEEC--CchhcHHHhhhccCCEEeeeeeCCC--CceEEEeecCCCCccceeecc-cCC-CC----------CCCC
Q psy18055 1 MQQTMYRIK--DPRKSLPFYTKVLGMSLLKKLDFPA--MKFSLYFMGNWGTEKDEDLTY-HNG-NS----------DPRG 64 (95)
Q Consensus 1 l~hv~l~v~--d~~~s~~FY~~~lg~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~-~~----------~~~g 64 (95)
++|+++.|+ |++++++||+++|||+.......+. .......+..+.......+.. ..+ .. ...|
T Consensus 4 iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~G~G 83 (191)
T cd07250 4 IDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYGGAG 83 (191)
T ss_pred eeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhCCCc
Confidence 589999999 9999999999999999887664332 233333333222111111111 110 10 1246
Q ss_pred cceEEEEeCCHHHHHHHHHHcCCeeecCCC
Q psy18055 65 FGHIGIQVPDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 65 ~~~i~f~v~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
..||||.|+|+++++++|+++|++++.+|.
T Consensus 84 v~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 84 VQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred eeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 679999999999999999999999999885
No 13
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.68 E-value=5.9e-16 Score=84.89 Aligned_cols=92 Identities=20% Similarity=0.330 Sum_probs=61.3
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeeccc-CC------CCCCCCcceEEEEeC
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYH-NG------NSDPRGFGHIGIQVP 73 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~i~f~v~ 73 (95)
++|++|.|+|+++|++||+++|||++......+...+..+++...+.......... .. .....+..|++|.|+
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v~ 81 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEVD 81 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEcC
Confidence 68999999999999999999999998765433333334444432211111100000 00 001234569999999
Q ss_pred CHHHHHHHHHHcCCeeecC
Q psy18055 74 DVTKACERFEQLGVEFVKK 92 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~ 92 (95)
|+++++++++++|++++.+
T Consensus 82 di~~~~~~l~~~G~~~~~~ 100 (128)
T TIGR03081 82 DIEAALETLKEKGVRLIDE 100 (128)
T ss_pred CHHHHHHHHHHCCCcccCC
Confidence 9999999999999999864
No 14
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.68 E-value=1.7e-15 Score=85.18 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=59.9
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCce-EEEeecCCCCccceeecccCCCCCCCCcceEEEEeCCHHH--
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKF-SLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTK-- 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d~~~-- 77 (95)
|+|++|.|+|+++|++||+++|||++..+...+.+.. ...++......+.. ....+. ..+..|++|.|+|+++
T Consensus 7 l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~~h~~--~~~~~~--~~~~~Hiaf~v~d~~~l~ 82 (143)
T cd07243 7 LDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNKPHDI--AFVGGP--DGKLHHFSFFLESWEDVL 82 (143)
T ss_pred eCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCCcceE--EEecCC--CCCceEEEEEcCCHHHHH
Confidence 5899999999999999999999999866643222221 22333322221211 111111 2456799999999777
Q ss_pred -HHHHHHHcCCeeecCC
Q psy18055 78 -ACERFEQLGVEFVKKP 93 (95)
Q Consensus 78 -~~~~l~~~G~~~~~~p 93 (95)
+.++|+++|+++..+|
T Consensus 83 ~~~~~l~~~Gv~i~~~p 99 (143)
T cd07243 83 KAGDIISMNDVSIDIGP 99 (143)
T ss_pred HHHHHHHHcCCceEECC
Confidence 6789999999987655
No 15
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.68 E-value=1.2e-15 Score=85.26 Aligned_cols=93 Identities=16% Similarity=0.317 Sum_probs=60.4
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCC-----------CceEEEeecCC-C-CccceeecccCC--------C
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPA-----------MKFSLYFMGNW-G-TEKDEDLTYHNG--------N 59 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~-----------~~~~~~~~~~~-~-~~~~~~~~~~~~--------~ 59 (95)
++||+|.|+|+++|++||++ |||++......++ ....+.++... + ...+......+. .
T Consensus 4 i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~~~~ 82 (142)
T cd08353 4 MDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHRPAP 82 (142)
T ss_pred eeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCCCCC
Confidence 58999999999999999998 9998865532211 22333333311 1 111111100000 0
Q ss_pred CCCCCcceEEEEeCCHHHHHHHHHHcCCeeecCCC
Q psy18055 60 SDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 60 ~~~~g~~~i~f~v~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
....|..|++|.|+|+++++++|+++|+++..+|.
T Consensus 83 ~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~ 117 (142)
T cd08353 83 VNALGLRRVMFAVDDIDARVARLRKHGAELVGEVV 117 (142)
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCce
Confidence 11234569999999999999999999999988663
No 16
>PRK11478 putative lyase; Provisional
Probab=99.67 E-value=1e-15 Score=84.24 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=57.6
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCC-CceEEEeecCCCCccceee-cccCC---CCCCCCcceEEEEeCCH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPA-MKFSLYFMGNWGTEKDEDL-TYHNG---NSDPRGFGHIGIQVPDV 75 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~g~~~i~f~v~d~ 75 (95)
++||+|.|+|+++|++||+++|||++......+. ..+...+.-.......... ....+ .....|..|++|.|+|+
T Consensus 7 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~g~~hi~f~v~d~ 86 (129)
T PRK11478 7 VHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFSVDDI 86 (129)
T ss_pred ecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCCCCCCceeEEEEEeCCH
Confidence 5899999999999999999999999864421111 1121111111111111100 00011 11123456999999999
Q ss_pred HHHHHHHHHcCCeeecC
Q psy18055 76 TKACERFEQLGVEFVKK 92 (95)
Q Consensus 76 ~~~~~~l~~~G~~~~~~ 92 (95)
++++++|+++|+++...
T Consensus 87 ~~~~~~l~~~G~~~~~~ 103 (129)
T PRK11478 87 DAAVAHLESHNVKCEAI 103 (129)
T ss_pred HHHHHHHHHcCCeeecc
Confidence 99999999999998643
No 17
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.67 E-value=1.3e-15 Score=82.13 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=61.0
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCCHHHHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACE 80 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d~~~~~~ 80 (95)
.+|++|.|+|+++|++||+++||+++..... +...+..+.. .+.................+..|++|.++|++++++
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~v~di~~~~~ 77 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDYAVFST--GGGAVGGLMKAPEPAAGSPPGWLVYFAVDDVDAAAA 77 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCceEEEEe--CCccEEEEecCCCCCCCCCCeEEEEEEeCCHHHHHH
Confidence 4799999999999999999999999876542 1233322222 221111111111111112233499999999999999
Q ss_pred HHHHcCCeeecCCC
Q psy18055 81 RFEQLGVEFVKKPN 94 (95)
Q Consensus 81 ~l~~~G~~~~~~p~ 94 (95)
+|+++|+++..+|.
T Consensus 78 ~l~~~g~~~~~~~~ 91 (114)
T cd07247 78 RVEAAGGKVLVPPT 91 (114)
T ss_pred HHHHCCCEEEeCCc
Confidence 99999999998874
No 18
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.65 E-value=5.2e-15 Score=80.57 Aligned_cols=94 Identities=20% Similarity=0.298 Sum_probs=60.6
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCC-CceEEEeecCCCCccceeecccC----CCCCCCCcceEEEEeCCH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPA-MKFSLYFMGNWGTEKDEDLTYHN----GNSDPRGFGHIGIQVPDV 75 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~i~f~v~d~ 75 (95)
++|++|.|.|++++++||+++|||++......+. ..+...+....+........... ......+..|++|.|+|+
T Consensus 4 ~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~h~~~~v~d~ 83 (125)
T cd08352 4 IHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSYPEACGLRHLAFSVEDI 83 (125)
T ss_pred cceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCCcCCCceEEEEEeCCH
Confidence 5899999999999999999999999876532222 22222121112211111110000 001123556999999999
Q ss_pred HHHHHHHHHcCCeeecCCC
Q psy18055 76 TKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 76 ~~~~~~l~~~G~~~~~~p~ 94 (95)
++++++++++|+++..+|.
T Consensus 84 ~~~~~~l~~~G~~~~~~~~ 102 (125)
T cd08352 84 EAAVKHLKAKGVEVEPIRV 102 (125)
T ss_pred HHHHHHHHHcCCccccccc
Confidence 9999999999999887653
No 19
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.65 E-value=2.8e-15 Score=85.88 Aligned_cols=91 Identities=23% Similarity=0.265 Sum_probs=57.9
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeee--CC----------------CCceEEEeecCCCCccceeeccc-CCCC-
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLD--FP----------------AMKFSLYFMGNWGTEKDEDLTYH-NGNS- 60 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 60 (95)
++||+|.|+|+++|++||+++|||++..+.. .+ ...+...++...+........+. ...+
T Consensus 5 i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~~~ 84 (162)
T TIGR03645 5 FSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQENPE 84 (162)
T ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCCCC
Confidence 5899999999999999999999998753210 00 11134444442221111111111 1001
Q ss_pred C-----CCCcceEEEEeCCHHHHHHHHHHcCCeeec
Q psy18055 61 D-----PRGFGHIGIQVPDVTKACERFEQLGVEFVK 91 (95)
Q Consensus 61 ~-----~~g~~~i~f~v~d~~~~~~~l~~~G~~~~~ 91 (95)
. ..|..|++|.|+|+++++++++++|+++..
T Consensus 85 ~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~ 120 (162)
T TIGR03645 85 DNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRM 120 (162)
T ss_pred cccccccccceEEEEEcCCHHHHHHHHHHcCCcccC
Confidence 0 135569999999999999999999987644
No 20
>PLN02300 lactoylglutathione lyase
Probab=99.65 E-value=4.4e-15 Score=91.76 Aligned_cols=94 Identities=37% Similarity=0.631 Sum_probs=65.6
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCC--ccceeecccCCC---CCCCCcceEEEEeCCH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGT--EKDEDLTYHNGN---SDPRGFGHIGIQVPDV 75 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~g~~~i~f~v~d~ 75 (95)
++|++|.|+|+++|++||+++|||++..+...+...+...+++.... ..........+. ....+..|++|.|+|+
T Consensus 25 l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~~v~dv 104 (286)
T PLN02300 25 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGIAVEDV 104 (286)
T ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEEEeCCH
Confidence 58999999999999999999999998776544444444455542211 111111111111 1123567999999999
Q ss_pred HHHHHHHHHcCCeeecCCC
Q psy18055 76 TKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 76 ~~~~~~l~~~G~~~~~~p~ 94 (95)
++++++++++|+++..+|.
T Consensus 105 d~~~~~l~~~G~~i~~~~~ 123 (286)
T PLN02300 105 AKTVELVKAKGGKVTREPG 123 (286)
T ss_pred HHHHHHHHHCCCeeecCCc
Confidence 9999999999999987764
No 21
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=4.6e-15 Score=80.08 Aligned_cols=90 Identities=23% Similarity=0.364 Sum_probs=62.0
Q ss_pred eeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCC-ccceeecccCCC-----CCCCCcceEEEEeCCHH
Q psy18055 3 QTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGT-EKDEDLTYHNGN-----SDPRGFGHIGIQVPDVT 76 (95)
Q Consensus 3 hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~g~~~i~f~v~d~~ 76 (95)
||+|.|.|++++++||+++|||++..+..... ...++.+...+. ..........+. ....+..|++|.|+|++
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di~ 79 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGSPETSLVLAPPANPAAMSGLQPGGTPGLVLATDDID 79 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCCCeeEEEEeCCCCccccccccCCCceEEEEEehHHH
Confidence 89999999999999999999999987754222 233444443222 111111111111 11234459999999999
Q ss_pred HHHHHHHHcCCeeecCC
Q psy18055 77 KACERFEQLGVEFVKKP 93 (95)
Q Consensus 77 ~~~~~l~~~G~~~~~~p 93 (95)
+++++++++|+++..+|
T Consensus 80 ~~~~~l~~~g~~~~~~~ 96 (119)
T cd07263 80 ATYEELKARGVEFSEEP 96 (119)
T ss_pred HHHHHHHhCCCEEeecc
Confidence 99999999999999887
No 22
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=8.3e-15 Score=80.08 Aligned_cols=94 Identities=20% Similarity=0.236 Sum_probs=58.2
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCC------CCceEEEeecCCCCccceeecccCCCCC-CCCcceEEEEeC
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFP------AMKFSLYFMGNWGTEKDEDLTYHNGNSD-PRGFGHIGIQVP 73 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~i~f~v~ 73 (95)
|.|++|.|+|++++++||+++|||++......+ .+...+.+...............+.... ..+..+++|.|+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESGDYGELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIAFVTD 80 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCCcEEEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEEEEcC
Confidence 679999999999999999999999986542211 1111111211100000000000001111 122248999999
Q ss_pred CHHHHHHHHHHcCCeeecCCC
Q psy18055 74 DVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~p~ 94 (95)
|+++++++++++|+++..+|.
T Consensus 81 di~~~~~~l~~~G~~~~~~~~ 101 (125)
T cd07264 81 DVAAAFARAVEAGAVLVSEPK 101 (125)
T ss_pred CHHHHHHHHHHcCCEeccCCc
Confidence 999999999999999988874
No 23
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.63 E-value=4.1e-15 Score=79.51 Aligned_cols=91 Identities=22% Similarity=0.337 Sum_probs=61.3
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCC---CCCCCcceEEEEeCCHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGN---SDPRGFGHIGIQVPDVTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~i~f~v~d~~~ 77 (95)
|+|++|.|+|++++++||+++||+++..+...+.. ..+...+. ...... ....... ....+..|++|.|+|+++
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~-~~~~~~~~-~~~i~l-~~~~~~~~~~~~~~~~~~~~~~v~d~~~ 77 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLFP-GAWLYAGD-GPQLHL-IEEDPPDALPEGPGRDDHIAFRVDDLDA 77 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCCC-ceEEEeCC-CcEEEE-EecCCCccccCCCcccceEEEEeCCHHH
Confidence 68999999999999999999999998765432211 12233322 111111 1111111 012344599999999999
Q ss_pred HHHHHHHcCCeeecCCC
Q psy18055 78 ACERFEQLGVEFVKKPN 94 (95)
Q Consensus 78 ~~~~l~~~G~~~~~~p~ 94 (95)
++++++++|+++..+|.
T Consensus 78 ~~~~l~~~g~~~~~~~~ 94 (114)
T cd07245 78 FRARLKAAGVPYTESDV 94 (114)
T ss_pred HHHHHHHcCCCcccccC
Confidence 99999999999988764
No 24
>KOG2944|consensus
Probab=99.63 E-value=5.9e-16 Score=86.49 Aligned_cols=95 Identities=54% Similarity=0.870 Sum_probs=66.7
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCC---------------------CceEEEeec--------CCCCccce
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPA---------------------MKFSLYFMG--------NWGTEKDE 51 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~---------------------~~~~~~~~~--------~~~~~~~~ 51 (95)
++|.++++.|+.+|..||..++|+.+...-.++. +...+.+.+ +||.....
T Consensus 23 ~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gtes~~ 102 (170)
T KOG2944|consen 23 LQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTESPP 102 (170)
T ss_pred hhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCCCCc
Confidence 4688999999999999999999988764432111 121222222 34443333
Q ss_pred eecccCCCCCCCCcceEEEEeCCHHHHHHHHHHcCCeeecCCCC
Q psy18055 52 DLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95 (95)
Q Consensus 52 ~~~~~~~~~~~~g~~~i~f~v~d~~~~~~~l~~~G~~~~~~p~~ 95 (95)
...+..++..++|.+||||+|+|++.++.++++.|+++...|.+
T Consensus 103 ~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~d 146 (170)
T KOG2944|consen 103 DQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKD 146 (170)
T ss_pred chhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCC
Confidence 23445566666788999999999999999999999998887753
No 25
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.62 E-value=1.4e-14 Score=80.55 Aligned_cols=87 Identities=16% Similarity=0.290 Sum_probs=58.3
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCC-CCccceeecccCCCCCCCCcceEEEEeCCHHHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNW-GTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKAC 79 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~i~f~v~d~~~~~ 79 (95)
++|++|.|+|+++|++||+++||+++..... . . ..++... +.......... ......+..|++|.|+|++++.
T Consensus 4 l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~-~--~~~~~~~~~~~~~~i~l~~-~~~~~~g~~hiaf~v~d~~~~~ 77 (134)
T cd08360 4 LGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G-R--GAFLRAAGGGDHHNLFLIK-TPAPMAGFHHAAFEVGDIDEVM 77 (134)
T ss_pred eeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C-c--EEEEECCCCCCCcEEEEec-CCCCCCcceEEEEEeCCHHHHH
Confidence 5899999999999999999999999876542 1 1 2233222 11111111111 1111246779999999877665
Q ss_pred ---HHHHHcCCeeecCC
Q psy18055 80 ---ERFEQLGVEFVKKP 93 (95)
Q Consensus 80 ---~~l~~~G~~~~~~p 93 (95)
++|+++|+++..+|
T Consensus 78 ~~~~~l~~~G~~~~~~~ 94 (134)
T cd08360 78 LGGNHMLRAGYQTGWGP 94 (134)
T ss_pred HHHHHHHHcCCccccCC
Confidence 69999999987655
No 26
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.62 E-value=2.1e-14 Score=79.46 Aligned_cols=89 Identities=21% Similarity=0.379 Sum_probs=60.7
Q ss_pred ceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCCH---HHH
Q psy18055 2 QQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDV---TKA 78 (95)
Q Consensus 2 ~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d~---~~~ 78 (95)
+||+|.|+|+++|++||+++||+++......+ +.....++...+....... ... . ...+..|++|.|+|+ +++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~~~-~-~~~~~~hl~~~v~d~~~~~~~ 76 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDEDHHDLAL-FPG-P-ERPGLHHVAFEVESLDDILRA 76 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCCcceEEE-EcC-C-CCCCeeEEEEEcCCHHHHHHH
Confidence 59999999999999999999999987665433 2223334432222111111 111 1 134667999999986 478
Q ss_pred HHHHHHcCCeeecCCC
Q psy18055 79 CERFEQLGVEFVKKPN 94 (95)
Q Consensus 79 ~~~l~~~G~~~~~~p~ 94 (95)
+++++++|+++..+|.
T Consensus 77 ~~~l~~~G~~i~~~~~ 92 (131)
T cd08343 77 ADRLAANGIQIEFGPG 92 (131)
T ss_pred HHHHHHcCCeeEECCC
Confidence 9999999999987653
No 27
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.61 E-value=2.9e-14 Score=77.80 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=60.1
Q ss_pred eeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCC-----CCCCCCcceEEEEeCCHHH
Q psy18055 3 QTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNG-----NSDPRGFGHIGIQVPDVTK 77 (95)
Q Consensus 3 hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~g~~~i~f~v~d~~~ 77 (95)
...|.|+|+++|++||+++||+++......+.+......+...+............ .....+..+++|.|+|+++
T Consensus 2 ~p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~ 81 (122)
T cd08355 2 WPTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDA 81 (122)
T ss_pred eEEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECCHHH
Confidence 35789999999999999999999987764334333333332221111110000000 0111234499999999999
Q ss_pred HHHHHHHcCCeeecCCC
Q psy18055 78 ACERFEQLGVEFVKKPN 94 (95)
Q Consensus 78 ~~~~l~~~G~~~~~~p~ 94 (95)
++++++++|+++..+|.
T Consensus 82 ~~~~l~~~G~~v~~~~~ 98 (122)
T cd08355 82 HYERARAAGAEILREPT 98 (122)
T ss_pred HHHHHHHCCCEEeeCcc
Confidence 99999999999998875
No 28
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.61 E-value=2.6e-14 Score=81.30 Aligned_cols=90 Identities=21% Similarity=0.417 Sum_probs=60.5
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCC---CCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCCH--
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFP---AMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDV-- 75 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d~-- 75 (95)
++||+|.|+|++++++||+++|||++......+ +......++...+..+.. .... + ..+.+..|++|.|+|.
T Consensus 10 l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i-~~~~-~-~~~~g~~Hiaf~V~d~~~ 86 (154)
T cd07237 10 LGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSL-ALAE-G-PGPKRIHHLMLEVTSLDD 86 (154)
T ss_pred cCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCE-EEEc-C-CCCceeEEEEEEcCCHHH
Confidence 689999999999999999999999986653221 112334444322221111 1111 1 1124677999999874
Q ss_pred -HHHHHHHHHcCCeeecCC
Q psy18055 76 -TKACERFEQLGVEFVKKP 93 (95)
Q Consensus 76 -~~~~~~l~~~G~~~~~~p 93 (95)
++++++|+++|+++..+|
T Consensus 87 l~~~~~~L~~~G~~v~~~~ 105 (154)
T cd07237 87 VGRAYDRVRARGIPIAMTL 105 (154)
T ss_pred HHHHHHHHHHcCCceeccC
Confidence 468999999999998765
No 29
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.60 E-value=2.8e-14 Score=82.05 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=60.7
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCC---HHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPD---VTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d---~~~ 77 (95)
++|++|.|+|++++++||+++|||++......+.+.....++...+....... ...+.....+..|++|.|+| +++
T Consensus 7 i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l-~~~~~~~~~~~~hiaf~v~~~~~l~~ 85 (166)
T cd09014 7 LDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAY-TRDPAGARGRLHHLAYALDTREDVLR 85 (166)
T ss_pred eeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEE-ecCCCCCCCCceEEEEECCCHHHHHH
Confidence 57999999999999999999999998766433322222233332221111111 11111112345699999986 558
Q ss_pred HHHHHHHcCCeeecCCC
Q psy18055 78 ACERFEQLGVEFVKKPN 94 (95)
Q Consensus 78 ~~~~l~~~G~~~~~~p~ 94 (95)
++++|+++|+++..+|.
T Consensus 86 ~~~~l~~~Gv~i~~~p~ 102 (166)
T cd09014 86 AADIFLENGIFIEAGPG 102 (166)
T ss_pred HHHHHHHcCCccccCCc
Confidence 88999999999876653
No 30
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.60 E-value=2.2e-14 Score=82.11 Aligned_cols=84 Identities=19% Similarity=0.350 Sum_probs=56.1
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCC---HHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPD---VTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d---~~~ 77 (95)
++||+|.|+|+++|++||+++|||++......+.+.....++...+..+.... ..+. ..+..|++|.|+| +++
T Consensus 4 l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l--~~~~--~~~~~Hiaf~v~~~~~v~~ 79 (161)
T cd07256 4 LDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTAL--TGGN--GPRLHHVAFWVPEPHNIIR 79 (161)
T ss_pred EEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEE--ecCC--CCceeEEEEEcCCHHHHHH
Confidence 58999999999999999999999998755433233222233322222221111 1111 1356699999986 888
Q ss_pred HHHHHHHcCCe
Q psy18055 78 ACERFEQLGVE 88 (95)
Q Consensus 78 ~~~~l~~~G~~ 88 (95)
++++|+++|++
T Consensus 80 ~~~~L~~~G~~ 90 (161)
T cd07256 80 TCDLLAAAGYS 90 (161)
T ss_pred HHHHHHHcCCC
Confidence 89999999986
No 31
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.60 E-value=1.8e-14 Score=78.66 Aligned_cols=85 Identities=20% Similarity=0.406 Sum_probs=58.2
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCC-CccceeecccCCCCCCCCcceEEEEeC---CHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWG-TEKDEDLTYHNGNSDPRGFGHIGIQVP---DVT 76 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~i~f~v~---d~~ 76 (95)
++|++|.|+|+++|++||+++|||++..... .+ . .++..++ ........ .... ..+..|++|.+. |++
T Consensus 5 l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~-~--~~~~~~~~~~~~~~~l-~~~~--~~~~~hiaf~v~~~~dv~ 76 (122)
T cd07265 5 PGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG-R--VYLKAWDEFDHHSIVL-READ--TAGLDFMGFKVLDDADLE 76 (122)
T ss_pred EeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc-e--EEEEccCCCcccEEEe-ccCC--CCCeeEEEEEeCCHHHHH
Confidence 5899999999999999999999999875531 22 1 2222121 11111111 1111 235679999997 799
Q ss_pred HHHHHHHHcCCeeecCC
Q psy18055 77 KACERFEQLGVEFVKKP 93 (95)
Q Consensus 77 ~~~~~l~~~G~~~~~~p 93 (95)
+++++++++|+++...|
T Consensus 77 ~~~~~l~~~G~~~~~~~ 93 (122)
T cd07265 77 KLEARLQAYGVAVERIP 93 (122)
T ss_pred HHHHHHHHCCCcEEEcc
Confidence 99999999999987654
No 32
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.60 E-value=2e-15 Score=82.39 Aligned_cols=92 Identities=28% Similarity=0.389 Sum_probs=60.2
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeee--CCCCceEEEeecCCCCccceeecccCCCCCCCC-------cceEEEE
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLD--FPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRG-------FGHIGIQ 71 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~i~f~ 71 (95)
|+||+|.|+|++++++||+++|||++..... .+.......++............. .......+ ..|+++.
T Consensus 2 l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~ 80 (128)
T PF00903_consen 2 LDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNP-SPPPRASGHSFPEHGGHHIAFL 80 (128)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEE-SSSSSSEEEHHHSHTSEEEEEE
T ss_pred eEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeec-cccccccccccccccceeEEEE
Confidence 5899999999999999999999999988765 222333333443333222221111 11111111 2366666
Q ss_pred eC---CHHHHHHHHHHcCCeeecCC
Q psy18055 72 VP---DVTKACERFEQLGVEFVKKP 93 (95)
Q Consensus 72 v~---d~~~~~~~l~~~G~~~~~~p 93 (95)
+. |+++++++|++.|+++..+|
T Consensus 81 ~~~~~dl~~~~~~l~~~g~~~~~~~ 105 (128)
T PF00903_consen 81 AFDVDDLDAAYERLKAQGVEIVEEP 105 (128)
T ss_dssp ESSHHHHHHHHHHHHHTTGEEEEEE
T ss_pred eccHHHHHHHHHHHhhcCccEEecC
Confidence 65 68889999999999998876
No 33
>PRK06724 hypothetical protein; Provisional
Probab=99.59 E-value=2.6e-14 Score=79.12 Aligned_cols=83 Identities=18% Similarity=0.340 Sum_probs=55.5
Q ss_pred CceeEEEECCchhcHHHhhhcc---CCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEe---CC
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVL---GMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQV---PD 74 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~l---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v---~d 74 (95)
++||+|.|+|+++|++||+++| |++.........+...+.+.. .... .....+..|+||.| ++
T Consensus 8 i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g~~~l~l~~-~~~~----------~~~~~g~~h~af~v~~~~d 76 (128)
T PRK06724 8 IHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTGESEIYFKE-VDEE----------IVRTLGPRHICYQAINRKV 76 (128)
T ss_pred cCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCCCeeEEEec-CCcc----------ccCCCCceeEEEecCChHH
Confidence 6899999999999999999966 666532211222222222211 1100 00123556999998 67
Q ss_pred HHHHHHHHHHcCCeeecCCC
Q psy18055 75 VTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 75 ~~~~~~~l~~~G~~~~~~p~ 94 (95)
+++++++++++|+++..+|.
T Consensus 77 vd~~~~~l~~~G~~~~~~p~ 96 (128)
T PRK06724 77 VDEVAEFLSSTKIKIIRGPM 96 (128)
T ss_pred HHHHHHHHHHCCCEEecCCc
Confidence 99999999999999987764
No 34
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.58 E-value=4e-14 Score=79.53 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=59.4
Q ss_pred ceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCC-CccceeecccCCCCCCCCcceEEEEeCC---HHH
Q psy18055 2 QQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWG-TEKDEDLTYHNGNSDPRGFGHIGIQVPD---VTK 77 (95)
Q Consensus 2 ~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~i~f~v~d---~~~ 77 (95)
.||.|.|+|+++|++||+++|||++..+.. . ...++...+ ..++. ..... ....+..|++|.|+| +++
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~---~--~~~~l~~~~~~~~h~-~~~~~--~~~~gl~Hiaf~v~~~~~v~~ 72 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE---D--RIVFMRCHPNPFHHT-FAVGP--ASSSHFHHVNFMVTDIDDIGK 72 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC---C--EEEEEEcCCCCCcce-eeecc--CCCCceEEEEEECCCHHHHHH
Confidence 599999999999999999999999876642 1 234443222 22221 11111 123467899999986 567
Q ss_pred HHHHHHHcCCeeecCCC
Q psy18055 78 ACERFEQLGVEFVKKPN 94 (95)
Q Consensus 78 ~~~~l~~~G~~~~~~p~ 94 (95)
++++|+++|+++..+|.
T Consensus 73 ~~~~l~~~G~~~~~~p~ 89 (141)
T cd07258 73 ALYRIKAHDVKVVFGPG 89 (141)
T ss_pred HHHHHHHCCCcEEeCCc
Confidence 79999999999887663
No 35
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.58 E-value=2.7e-14 Score=77.96 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=58.0
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCC---HHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPD---VTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d---~~~ 77 (95)
+.||+|.|+|+++|++||+++|||++..+.. ....++.. .+..+...+ ..+. ..+..|++|.+++ +++
T Consensus 3 l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~~~~~~~~--~~~~~~~~l--~~~~--~~~~~~~~f~v~~~~dl~~ 73 (120)
T cd07252 3 LGYLGVESSDLDAWRRFATDVLGLQVGDRPE---DGALYLRM--DDRAWRIAV--HPGE--ADDLAYAGWEVADEAALDA 73 (120)
T ss_pred ccEEEEEeCCHHHHHHHHHhccCceeccCCC---CCeEEEEc--cCCceEEEE--EeCC--CCceeEEEEEECCHHHHHH
Confidence 5799999999999999999999999865521 12222222 222222211 1111 2356699999974 999
Q ss_pred HHHHHHHcCCeeecCC
Q psy18055 78 ACERFEQLGVEFVKKP 93 (95)
Q Consensus 78 ~~~~l~~~G~~~~~~p 93 (95)
++++|+++|+++...|
T Consensus 74 ~~~~l~~~Gv~~~~~~ 89 (120)
T cd07252 74 LAARLRAAGVAVEEGS 89 (120)
T ss_pred HHHHHHHcCCeEEEcC
Confidence 9999999999998644
No 36
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.57 E-value=7.2e-14 Score=76.19 Aligned_cols=93 Identities=23% Similarity=0.341 Sum_probs=59.6
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCC-ceEEEeecCC--CCccceee-cccCC----CCCCCCcceEEEEe
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAM-KFSLYFMGNW--GTEKDEDL-TYHNG----NSDPRGFGHIGIQV 72 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~-~~~~~----~~~~~g~~~i~f~v 72 (95)
++||+|.|.|+++|++||+++|||++......++. .....++... .......+ ..... .....+..|++|.|
T Consensus 2 i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~v 81 (126)
T cd08346 2 LHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFSV 81 (126)
T ss_pred cccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEEc
Confidence 58999999999999999999999998776542221 1122222211 11111111 11111 11123456999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCC
Q psy18055 73 P---DVTKACERFEQLGVEFVKKP 93 (95)
Q Consensus 73 ~---d~~~~~~~l~~~G~~~~~~p 93 (95)
+ ++++++++++++|+++..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~~~ 105 (126)
T cd08346 82 PSEASLDAWRERLRAAGVPVSGVV 105 (126)
T ss_pred CCHHHHHHHHHHHHHcCCcccceE
Confidence 8 47999999999999987654
No 37
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.57 E-value=1.2e-13 Score=74.98 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=60.4
Q ss_pred eEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccC-C-C-CCCCCcceEEEEeCCHHHHHH
Q psy18055 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHN-G-N-SDPRGFGHIGIQVPDVTKACE 80 (95)
Q Consensus 4 v~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~g~~~i~f~v~d~~~~~~ 80 (95)
+.|.|+|+++|++||+++||+++......+.+.+.+..+...+........... + . ....+..|++|.|+|++++++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 84 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVDATFA 84 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccCCCCCCCCceEEEEEEeCCHHHHHH
Confidence 468999999999999999999998776534444333333322221111100000 0 0 111233499999999999999
Q ss_pred HHHHcCCeeecCCC
Q psy18055 81 RFEQLGVEFVKKPN 94 (95)
Q Consensus 81 ~l~~~G~~~~~~p~ 94 (95)
++.+.|+++..+|.
T Consensus 85 ~l~~~G~~~~~~~~ 98 (122)
T cd07246 85 RAVAAGATSVMPPA 98 (122)
T ss_pred HHHHCCCeEecCcc
Confidence 99999999998875
No 38
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.56 E-value=4.1e-14 Score=80.77 Aligned_cols=87 Identities=23% Similarity=0.347 Sum_probs=57.0
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeeccc-CCCC---CCCCcceEEEEeCC--
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYH-NGNS---DPRGFGHIGIQVPD-- 74 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~g~~~i~f~v~d-- 74 (95)
++||+|.|+|+++|++||+++|||++..+.. +...+...+. .......+... .... ...+..|++|.|+|
T Consensus 2 l~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~d~~ 77 (157)
T cd08347 2 LHGVTLTVRDPEATAAFLTDVLGFREVGEEG---DRVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVPDDE 77 (157)
T ss_pred cccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---CEEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECCCHH
Confidence 6899999999999999999999999876642 2222222110 11111111111 1111 11345699999998
Q ss_pred -HHHHHHHHHHcCCeeec
Q psy18055 75 -VTKACERFEQLGVEFVK 91 (95)
Q Consensus 75 -~~~~~~~l~~~G~~~~~ 91 (95)
+++++++|+++|+++..
T Consensus 78 dvd~~~~~L~~~Gv~~~~ 95 (157)
T cd08347 78 ELEAWKERLEALGLPVSG 95 (157)
T ss_pred HHHHHHHHHHHCCCCccc
Confidence 99999999999998643
No 39
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.55 E-value=1e-13 Score=78.06 Aligned_cols=84 Identities=18% Similarity=0.393 Sum_probs=57.0
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCCHHHHH-
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKAC- 79 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d~~~~~- 79 (95)
++|+.|.|+|+++|++||+++|||++..... ... .++........... ... ...+..|++|.|+|++.+.
T Consensus 5 l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---~~~--~~l~~~~~~~~~~l--~~~--~~~~~~hiaf~v~d~~~l~~ 75 (144)
T cd07239 5 ISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---DQM--AFLRCNSDHHSIAI--ARG--PHPSLNHVAFEMPSIDEVMR 75 (144)
T ss_pred eeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---CeE--EEEECCCCcceEEE--ccC--CCCceEEEEEECCCHHHHHH
Confidence 5899999999999999999999999864421 112 23332221111111 111 1235669999999877664
Q ss_pred --HHHHHcCCeeecCC
Q psy18055 80 --ERFEQLGVEFVKKP 93 (95)
Q Consensus 80 --~~l~~~G~~~~~~p 93 (95)
++|+++|+++..+|
T Consensus 76 ~~~~l~~~Gi~~~~~~ 91 (144)
T cd07239 76 GIGRMIDKGIDILWGP 91 (144)
T ss_pred HHHHHHHcCCceeeCC
Confidence 89999999987665
No 40
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.55 E-value=7.9e-14 Score=77.96 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=57.1
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeeccc-CCCCCCCCcceEEEEeC--CHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYH-NGNSDPRGFGHIGIQVP--DVTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~f~v~--d~~~ 77 (95)
++|++|.|+|+++|++||+++||+++..+. .. ..++...+.......... .......+..|++|.++ |+++
T Consensus 5 i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~----~~--~~~~~~~g~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~dv~~ 78 (139)
T PRK04101 5 INHICFSVSNLEKSIEFYEKVLGAKLLVKG----RK--TAYFDLNGLWIALNEEKDIPRNEIHQSYTHIAFSIEEEDFDH 78 (139)
T ss_pred EEEEEEEecCHHHHHHHHHhccCCEEEeec----Ce--eEEEecCCeEEEeeccCCCCCccCCCCeeEEEEEecHHHHHH
Confidence 579999999999999999999999987542 11 122221121110000000 00001134569999998 8999
Q ss_pred HHHHHHHcCCeeecCC
Q psy18055 78 ACERFEQLGVEFVKKP 93 (95)
Q Consensus 78 ~~~~l~~~G~~~~~~p 93 (95)
++++++++|+++..+|
T Consensus 79 ~~~~l~~~G~~i~~~~ 94 (139)
T PRK04101 79 WYQRLKENDVNILPGR 94 (139)
T ss_pred HHHHHHHCCceEcCCc
Confidence 9999999999987655
No 41
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.55 E-value=1.4e-13 Score=75.15 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=57.7
Q ss_pred CceeEEEECCchhcHHHhhhc---cCCEEeeeeeCCCCceEEEeecCCCCccceeecccC-CCC-CCCCcceEEEEeCC-
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKV---LGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHN-GNS-DPRGFGHIGIQVPD- 74 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~---lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~g~~~i~f~v~d- 74 (95)
++|++|.|+|+++|++||+++ ||++...+. .+. + +.+ ...+........... +.. ...+..|++|.|++
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~~-~-~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~hi~f~v~~~ 75 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GPG-A-VGY-GKGGGGPDFWVTKPFDGEPATAGNGTHVAFAAPSR 75 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CCc-e-eEe-ccCCCCceEEEeccccCCCCCCCCceEEEEECCCH
Confidence 689999999999999999999 688876543 121 1 222 222111111111111 111 11234599999986
Q ss_pred --HHHHHHHHHHcCCeeecCCC
Q psy18055 75 --VTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 75 --~~~~~~~l~~~G~~~~~~p~ 94 (95)
+++++++++++|+++..+|.
T Consensus 76 ~~v~~~~~~~~~~g~~~~~~~~ 97 (123)
T cd07262 76 EAVDAFHAAALAAGGTDEGAPG 97 (123)
T ss_pred HHHHHHHHHHHHcCCccCCCCC
Confidence 88899999999999887764
No 42
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.55 E-value=9.6e-14 Score=75.53 Aligned_cols=90 Identities=18% Similarity=0.256 Sum_probs=59.3
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecc---cCCC-CCCCCcceEEEEeCC-H
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTY---HNGN-SDPRGFGHIGIQVPD-V 75 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~g~~~i~f~v~d-~ 75 (95)
++|+.|.|+|++++++||+++||++.......+. ......+ +......... .... ....+..|++|.+++ +
T Consensus 4 l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~~--~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~hi~~~~~~~~ 79 (125)
T cd07253 4 IDHVVLTVADIEATLDFYTRVLGMEVVRFGEEVG--RKALRFG--SQKINLHPVGGEFEPAAGSPGPGSDDLCLITEPPI 79 (125)
T ss_pred cceEEEEecCHHHHHHHHHHHhCceeecccccCC--ceEEEeC--CEEEEEecCCCccCcCccCCCCCCceEEEEecccH
Confidence 5899999999999999999999999876643211 2222222 1111110000 0000 112355699999975 9
Q ss_pred HHHHHHHHHcCCeeecCCC
Q psy18055 76 TKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 76 ~~~~~~l~~~G~~~~~~p~ 94 (95)
++++++++++|+++..+|.
T Consensus 80 ~~~~~~l~~~G~~~~~~~~ 98 (125)
T cd07253 80 DELVAHLEAHGVPIEEGPV 98 (125)
T ss_pred HHHHHHHHHCCceeecCcc
Confidence 9999999999999987663
No 43
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.54 E-value=1.7e-13 Score=75.89 Aligned_cols=89 Identities=20% Similarity=0.344 Sum_probs=58.0
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCC-CCccceeecccCCC---CCCCCcceEEEEeCCHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNW-GTEKDEDLTYHNGN---SDPRGFGHIGIQVPDVT 76 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~g~~~i~f~v~d~~ 76 (95)
|+|++|.|+|++++++||+++||+++...... .. +.++... .............. ....+..|++|.|+|++
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~--~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~~~ 77 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GG--LVFLSRDPDEHHQIALITGRPAAPPPGPAGLNHIAFEVDSLD 77 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--Cc--EEEEEecCCCceEEEEEecCCCCCCCCCCCceEEEEEeCCHH
Confidence 68999999999999999999999998765421 12 2333322 11111111111111 11235569999998754
Q ss_pred ---HHHHHHHHcCCeeecCC
Q psy18055 77 ---KACERFEQLGVEFVKKP 93 (95)
Q Consensus 77 ---~~~~~l~~~G~~~~~~p 93 (95)
++++++.++|+++..++
T Consensus 78 ~v~~~~~~l~~~G~~~~~~~ 97 (134)
T cd08348 78 DLRDLYERLRAAGITPVWPV 97 (134)
T ss_pred HHHHHHHHHHHCCCCccccC
Confidence 68899999999887654
No 44
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.54 E-value=2.3e-13 Score=74.72 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=58.9
Q ss_pred CceeEEEECCchhcHHHhhhcc---CCEEeeeeeCCCCceEEEeecCCCCccceeecccCCC----CCCCCcceEEEEeC
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVL---GMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGN----SDPRGFGHIGIQVP 73 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~l---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~i~f~v~ 73 (95)
++||+|.|+|++++++||+++| ||++..... . ...+... ..+............. ....+..|++|.|+
T Consensus 2 i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~~~~~~~-~~~~~i~l~~~~~~~~~~~~~~~~g~~hia~~v~ 77 (128)
T cd07242 2 IHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-GRSWRAG-DGGTYLVLQQADGESAGRHDRRNPGLHHLAFRAP 77 (128)
T ss_pred CceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-CceEEec-CCceEEEEEecccCCCcccccCCcCeeEEEEEcC
Confidence 6899999999999999999999 999877642 1 1122221 1111111100000000 11234569999997
Q ss_pred C---HHHHHHHHHHcCCeeecCCC
Q psy18055 74 D---VTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 74 d---~~~~~~~l~~~G~~~~~~p~ 94 (95)
+ +++++++++++|+++..+|.
T Consensus 78 ~~~d~~~~~~~l~~~g~~~~~~~~ 101 (128)
T cd07242 78 SREAVDELYARLAKRGAEILYAPR 101 (128)
T ss_pred CHHHHHHHHHHHHHcCCeEecCCc
Confidence 4 89999999999999988764
No 45
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.53 E-value=1.6e-13 Score=85.22 Aligned_cols=91 Identities=18% Similarity=0.290 Sum_probs=60.2
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCce-EEEeecCCCCccceeecccCCCCCCCCcceEEEEeCC---HH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKF-SLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPD---VT 76 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d---~~ 76 (95)
++||+|.|+|++++++||+++|||++..+...+.+.. ...++......+.. .... ...+.+..|++|.|+| ++
T Consensus 146 i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~g~~~Hiaf~v~~~~~v~ 222 (303)
T TIGR03211 146 LDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKAHDI--AFVG-DPEPGKLHHVSFFLDSWEDVL 222 (303)
T ss_pred EEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCCccc--ceec-CCCCCceEEEEEEcCCHHHHH
Confidence 5799999999999999999999999876654333322 22333322111111 1111 1111226799999996 66
Q ss_pred HHHHHHHHcCCeeecCCC
Q psy18055 77 KACERFEQLGVEFVKKPN 94 (95)
Q Consensus 77 ~~~~~l~~~G~~~~~~p~ 94 (95)
+++++|+++|+++..+|.
T Consensus 223 ~~~~~l~~~G~~~~~~p~ 240 (303)
T TIGR03211 223 KAADVMSKNDVSIDIGPT 240 (303)
T ss_pred HHHHHHHhCCCceeeCCc
Confidence 678899999999987763
No 46
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.53 E-value=1.3e-13 Score=76.44 Aligned_cols=88 Identities=19% Similarity=0.299 Sum_probs=57.1
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCC--ceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeC--CHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAM--KFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVP--DVT 76 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~--d~~ 76 (95)
++|++|.|+|+++|++||+++||+++..+...... ....++.. .+.. ... .........+..|++|.|+ +++
T Consensus 5 i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~--i~l-~~~~~~~~~~~~Hiaf~v~~~~ld 80 (131)
T cd08364 5 LSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLI-GGLW--IAI-MEGDSLQERTYNHIAFKISDSDVD 80 (131)
T ss_pred EeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEc-CCeE--EEE-ecCCCCCCCCceEEEEEcCHHHHH
Confidence 58999999999999999999999987655321110 00111211 1111 111 1111111234569999998 799
Q ss_pred HHHHHHHHcCCeeecC
Q psy18055 77 KACERFEQLGVEFVKK 92 (95)
Q Consensus 77 ~~~~~l~~~G~~~~~~ 92 (95)
+++++|+++|+++..+
T Consensus 81 ~~~~~l~~~gv~~~~~ 96 (131)
T cd08364 81 EYTERIKALGVEMKPP 96 (131)
T ss_pred HHHHHHHHCCCEEecC
Confidence 9999999999988654
No 47
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.53 E-value=2.2e-13 Score=74.68 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=62.2
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCCHHHHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACE 80 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d~~~~~~ 80 (95)
+.|+.|.++|++++++||+++|||+.......... .++.....+......+..........+.-.+.|.|+|++...+
T Consensus 10 i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~--~y~~f~~~~~~~gG~l~~~~~~~p~~~~~~iy~~v~did~~l~ 87 (127)
T COG3324 10 IVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEM--RYAVFPADGAGAGGGLMARPGSPPGGGGWVIYFAVDDIDATLE 87 (127)
T ss_pred cEEEeeecCCHHHHHHHHHHhhCceecccccCCCc--eEEEEECCCccccceeccCCcCCCCCCCEEEEEecCChHHHHH
Confidence 36899999999999999999999999887654333 3333321121111111111111110122389999999999999
Q ss_pred HHHHcCCeeecCCCC
Q psy18055 81 RFEQLGVEFVKKPND 95 (95)
Q Consensus 81 ~l~~~G~~~~~~p~~ 95 (95)
+++++|.+|+.+|.+
T Consensus 88 rv~~~GG~V~~p~~~ 102 (127)
T COG3324 88 RVVAAGGKVLRPKTE 102 (127)
T ss_pred HHHhcCCeEEecccc
Confidence 999999999999863
No 48
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.53 E-value=2.1e-13 Score=74.39 Aligned_cols=82 Identities=21% Similarity=0.366 Sum_probs=56.4
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCC-ccceeecccCCCCCCCCcceEEEEeC---CHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGT-EKDEDLTYHNGNSDPRGFGHIGIQVP---DVT 76 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~i~f~v~---d~~ 76 (95)
++|++|.|+|+++|++||+++||+++..+.. .. .++..++. ......... . ...+..|++|.++ +++
T Consensus 7 i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~~--~~l~~~~~~~~~~~~l~~-~--~~~~~~h~af~v~~~~~v~ 77 (121)
T cd09013 7 LAHVELLTPKPEESLWFFTDVLGLEETGREG----QS--VYLRAWGDYEHHSLKLTE-S--PEAGLGHIAWRASSPEALE 77 (121)
T ss_pred eeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----Ce--EEEEeccCCCccEEEEee-C--CCCceEEEEEEcCCHHHHH
Confidence 5899999999999999999999999876531 12 23321221 111111111 1 1246679999997 588
Q ss_pred HHHHHHHHcCCeeec
Q psy18055 77 KACERFEQLGVEFVK 91 (95)
Q Consensus 77 ~~~~~l~~~G~~~~~ 91 (95)
+++++++++|+++..
T Consensus 78 ~~~~~l~~~G~~~~~ 92 (121)
T cd09013 78 RRVAALEASGLGIGW 92 (121)
T ss_pred HHHHHHHHcCCcccc
Confidence 999999999998754
No 49
>PLN02300 lactoylglutathione lyase
Probab=99.53 E-value=2.6e-13 Score=83.94 Aligned_cols=94 Identities=33% Similarity=0.569 Sum_probs=64.8
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCcc--ceeecccCCC---CCCCCcceEEEEeCCH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEK--DEDLTYHNGN---SDPRGFGHIGIQVPDV 75 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~g~~~i~f~v~d~ 75 (95)
+.|++|.|+|++++.+||+++|||++......+...+...++...+... ........+. ....+..|++|.|+|+
T Consensus 155 ~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di 234 (286)
T PLN02300 155 LCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDV 234 (286)
T ss_pred ceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCH
Confidence 4699999999999999999999999986554444445555543212111 1111111110 1113445999999999
Q ss_pred HHHHHHHHHcCCeeecCCC
Q psy18055 76 TKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 76 ~~~~~~l~~~G~~~~~~p~ 94 (95)
++++++++++|++++.+|.
T Consensus 235 ~~~~~~~~~~G~~v~~~p~ 253 (286)
T PLN02300 235 YKTAEAIKLVGGKITREPG 253 (286)
T ss_pred HHHHHHHHHcCCeEecCCc
Confidence 9999999999999998875
No 50
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.52 E-value=8.6e-14 Score=77.17 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=56.3
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeeccc-CCCCCCCCcceEEEEeCC--HHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYH-NGNSDPRGFGHIGIQVPD--VTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~f~v~d--~~~ 77 (95)
++||+|.|+|++++++||+++||+++.... +. .. ++..++.......... .......+..|++|.+++ +++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~--~~--~~--~~~~~~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~dld~ 74 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG--EK--TA--YFTIGGTWLALNEEPDIPRNEIRQSYTHIAFTIEDSEFDA 74 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC--Cc--cc--eEeeCceEEEEEccCCCCcCCcCccceEEEEEecHHHHHH
Confidence 689999999999999999999999986442 11 11 1111121111100000 000011345699999984 999
Q ss_pred HHHHHHHcCCeeecCC
Q psy18055 78 ACERFEQLGVEFVKKP 93 (95)
Q Consensus 78 ~~~~l~~~G~~~~~~p 93 (95)
++++++++|+++..+|
T Consensus 75 ~~~~l~~~G~~~~~~~ 90 (131)
T cd08363 75 FYTRLKEAGVNILPGR 90 (131)
T ss_pred HHHHHHHcCCcccCCC
Confidence 9999999999987654
No 51
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.52 E-value=1.3e-13 Score=75.26 Aligned_cols=86 Identities=20% Similarity=0.272 Sum_probs=57.4
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEe--CCHHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQV--PDVTKA 78 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v--~d~~~~ 78 (95)
++|++|.|+|++++++||+++|||++..... +. .++.. .+.... ...........+..|++|.+ +|++++
T Consensus 2 i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~~--~~~~~--~~~~~~--l~~~~~~~~~~~~~hi~f~v~~~dl~~~ 73 (121)
T cd07244 2 INHITLAVSDLERSVAFYVDLLGFKLHVRWD--KG--AYLEA--GDLWLC--LSVDANVGPAKDYTHYAFSVSEEDFASL 73 (121)
T ss_pred cceEEEEECCHHHHHHHHHHhcCCEEEEecC--Cc--eEEec--CCEEEE--EecCCCCCCCCCeeeEEEEeCHHHHHHH
Confidence 6899999999999999999999999865531 11 12222 221111 11111111123455999998 479999
Q ss_pred HHHHHHcCCeeecCCC
Q psy18055 79 CERFEQLGVEFVKKPN 94 (95)
Q Consensus 79 ~~~l~~~G~~~~~~p~ 94 (95)
+++++++|+++..++.
T Consensus 74 ~~~l~~~G~~~~~~~~ 89 (121)
T cd07244 74 KEKLRQAGVKEWKENT 89 (121)
T ss_pred HHHHHHcCCcccCCCC
Confidence 9999999999876653
No 52
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.52 E-value=1.4e-13 Score=74.77 Aligned_cols=84 Identities=18% Similarity=0.328 Sum_probs=58.1
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeC---CHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVP---DVTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~---d~~~ 77 (95)
|+|+.|.|+|++++++||+++|||++.... + ... ++...+..... ...... ...+..|++|.|+ ++++
T Consensus 4 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~---~-~~~--~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~v~~~~~l~~ 74 (120)
T cd08362 4 LRGVGLGVPDLAAAAAFYREVWGLSVVAED---D-GIV--YLRATGSEHHI-LRLRRS--DRNRLDVVSFSVASRADVDA 74 (120)
T ss_pred eeEEEEecCCHHHHHHHHHhCcCcEEEEec---C-CEE--EEECCCCccEE-EEeccC--CCCCCceEEEEeCCHHHHHH
Confidence 589999999999999999999999986542 1 222 22222222111 111111 1134569999994 6999
Q ss_pred HHHHHHHcCCeeecCC
Q psy18055 78 ACERFEQLGVEFVKKP 93 (95)
Q Consensus 78 ~~~~l~~~G~~~~~~p 93 (95)
++++++++|+++..+|
T Consensus 75 ~~~~l~~~G~~~~~~~ 90 (120)
T cd08362 75 LARQVAARGGTVLSEP 90 (120)
T ss_pred HHHHHHHcCCceecCC
Confidence 9999999999998765
No 53
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.52 E-value=1.7e-13 Score=75.28 Aligned_cols=82 Identities=20% Similarity=0.312 Sum_probs=57.8
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCC---HHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPD---VTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d---~~~ 77 (95)
+.|++|.|+|+++|++||+++|||++..+. . .. .++...+..+.. . ...+. .+..|++|+|++ +++
T Consensus 7 l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~---~-~~--~~l~~~~~~~~i-~-l~~~~---~~~~~iaf~v~~~~dv~~ 75 (124)
T cd08361 7 IAYVRLGTRDLAGATRFATDILGLQVAERT---A-KA--TYFRSDARDHTL-V-YIEGD---PAEQASGFELRDDDALES 75 (124)
T ss_pred eeEEEEeeCCHHHHHHHHHhccCceeccCC---C-Ce--EEEEcCCccEEE-E-EEeCC---CceEEEEEEECCHHHHHH
Confidence 579999999999999999999999986542 1 12 233322221111 1 12222 245699999986 999
Q ss_pred HHHHHHHcCCeeecCC
Q psy18055 78 ACERFEQLGVEFVKKP 93 (95)
Q Consensus 78 ~~~~l~~~G~~~~~~p 93 (95)
++++++++|+++..+|
T Consensus 76 ~~~~l~~~G~~~~~~~ 91 (124)
T cd08361 76 AATELEQYGHEVRRGT 91 (124)
T ss_pred HHHHHHHcCCceEEcC
Confidence 9999999999987654
No 54
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.52 E-value=2.7e-13 Score=83.89 Aligned_cols=89 Identities=22% Similarity=0.378 Sum_probs=59.9
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCC---HHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPD---VTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d---~~~ 77 (95)
++||+|.|+|+++|++||+++||+++......+.+.....++...+..+.. ....++ ..+..|++|.|+| ++.
T Consensus 137 i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~Hiaf~v~d~~~v~~ 212 (294)
T TIGR02295 137 LDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVHDI--ALTNGN--GPRLHHIAYWVHDPLNIIK 212 (294)
T ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcCce--EeecCC--CCceeeEEEEcCCHHHHHH
Confidence 579999999999999999999999987665333333333443322221211 111111 2456799999998 556
Q ss_pred HHHHHHHcCCe--eecCC
Q psy18055 78 ACERFEQLGVE--FVKKP 93 (95)
Q Consensus 78 ~~~~l~~~G~~--~~~~p 93 (95)
++++|+++|++ +..+|
T Consensus 213 ~~~~l~~~G~~~~~~~~p 230 (294)
T TIGR02295 213 ACDILASAGLSDSIERGP 230 (294)
T ss_pred HHHHHHhCCCCcccccCC
Confidence 78999999998 65554
No 55
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.52 E-value=1.8e-13 Score=74.53 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=55.9
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCC---CccceeecccCCCCCCCCcceEEEEeCCHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWG---TEKDEDLTYHNGNSDPRGFGHIGIQVPDVTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~i~f~v~d~~~ 77 (95)
++|+.|.|+|+++|++||+++||+++....+ . . ..+..... ...............+.+..|++|.|+|+++
T Consensus 3 ~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~--~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~dvd~ 77 (120)
T cd09011 3 FKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E--N-VTFEGGFALQEGYSWLEGISKADIIEKSNNFELYFEEEDFDA 77 (120)
T ss_pred EEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c--e-EEEeccceeccchhhhccCCcccccccCCceEEEEEehhhHH
Confidence 4789999999999999999999999864321 1 1 11111000 0000000000001111233599999999999
Q ss_pred HHHHHHHcCC-eeecCCC
Q psy18055 78 ACERFEQLGV-EFVKKPN 94 (95)
Q Consensus 78 ~~~~l~~~G~-~~~~~p~ 94 (95)
++++|+++|+ ++..+|.
T Consensus 78 ~~~~l~~~g~~~~~~~~~ 95 (120)
T cd09011 78 FLDKLKRYDNIEYVHPIK 95 (120)
T ss_pred HHHHHHhcCCcEEecCcc
Confidence 9999999985 7877765
No 56
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.50 E-value=4.7e-13 Score=73.15 Aligned_cols=86 Identities=26% Similarity=0.433 Sum_probs=57.5
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCC----CCCCCcceEEEEeCC--
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGN----SDPRGFGHIGIQVPD-- 74 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~i~f~v~d-- 74 (95)
++|++|.|+|++++++||+++|||++.... . . .++++..+............. ....+..|++|.|++
T Consensus 3 i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~-~--~~~l~~~~~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~~~~ 76 (125)
T cd07255 3 IGAVTLRVADLERSLAFYQDVLGLEVLERT---D-S--TAVLGTGGKRPLLVLEEDPDAPPAPPGATGLYHFAILLPSRA 76 (125)
T ss_pred EEEEEEEECCHHHHHHHHHhccCcEEEEcC---C-C--EEEEecCCCeEEEEEEeCCCCCcccCCCCcEEEEEEECCCHH
Confidence 589999999999999999999999998662 1 1 223332221111111111111 112345699999974
Q ss_pred -HHHHHHHHHHcCCeeecC
Q psy18055 75 -VTKACERFEQLGVEFVKK 92 (95)
Q Consensus 75 -~~~~~~~l~~~G~~~~~~ 92 (95)
+++++++++++|+++..+
T Consensus 77 ~v~~~~~~l~~~g~~~~~~ 95 (125)
T cd07255 77 DLAAALRRLIELGIPLVGA 95 (125)
T ss_pred HHHHHHHHHHHcCCceecc
Confidence 999999999999987653
No 57
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.50 E-value=2.7e-13 Score=73.25 Aligned_cols=84 Identities=21% Similarity=0.339 Sum_probs=59.3
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeC---CHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVP---DVTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~---d~~~ 77 (95)
++|+.|.|+|++++++||+++|||++.... +...+...+ .+....... .... ..+..|++|.|+ ++++
T Consensus 3 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~----~~~~~~~~~-~~~~~~~~~--~~~~--~~~~~h~~~~v~~~~~v~~ 73 (117)
T cd07240 3 IAYAELEVPDLERALEFYTDVLGLTVLDRD----AGSVYLRCS-EDDHHSLVL--TEGD--EPGVDALGFEVASEEDLEA 73 (117)
T ss_pred eeEEEEecCCHHHHHHHHHhccCcEEEeec----CCeEEEecC-CCCcEEEEE--EeCC--CCCceeEEEEcCCHHHHHH
Confidence 589999999999999999999999988664 112222222 122221111 1111 235679999997 5899
Q ss_pred HHHHHHHcCCeeecCC
Q psy18055 78 ACERFEQLGVEFVKKP 93 (95)
Q Consensus 78 ~~~~l~~~G~~~~~~p 93 (95)
++++++++|+++..+|
T Consensus 74 ~~~~l~~~g~~~~~~~ 89 (117)
T cd07240 74 LAAHLEAAGVAPEEAS 89 (117)
T ss_pred HHHHHHHcCCceEEcC
Confidence 9999999999998776
No 58
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.50 E-value=5.1e-13 Score=73.13 Aligned_cols=84 Identities=19% Similarity=0.380 Sum_probs=57.3
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeC--CHHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVP--DVTKA 78 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~--d~~~~ 78 (95)
++|++|.|+|+++|++||+++||+++.... +.+.+...+ .+. ..... ..+ ...+..|++|.++ |++++
T Consensus 5 ~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~~~~~-~~~--~l~~~-~~~--~~~~~~h~a~~v~~~dl~~~ 74 (123)
T cd08351 5 LNHTIVPARDREASAEFYAEILGLPWAKPF----GPFAVVKLD-NGV--SLDFA-QPD--GEIPPQHYAFLVSEEEFDRI 74 (123)
T ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEEEEEcC-CCc--EEEEe-cCC--CCCCcceEEEEeCHHHHHHH
Confidence 579999999999999999999999986532 222222222 111 11111 111 1223469999887 69999
Q ss_pred HHHHHHcCCeeecCCC
Q psy18055 79 CERFEQLGVEFVKKPN 94 (95)
Q Consensus 79 ~~~l~~~G~~~~~~p~ 94 (95)
+++++++|+++..+|.
T Consensus 75 ~~~l~~~G~~~~~~~~ 90 (123)
T cd08351 75 FARIRERGIDYWADPQ 90 (123)
T ss_pred HHHHHHcCCceecCCc
Confidence 9999999999877653
No 59
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.49 E-value=3e-13 Score=73.63 Aligned_cols=84 Identities=25% Similarity=0.266 Sum_probs=56.8
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeC---CHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVP---DVTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~---d~~~ 77 (95)
++|++|.|+|++++++||+++||+++.... + .+.++... ....... .....+ ...+..|++|.|. |+++
T Consensus 5 i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~-~~~~~~~~-~~~~~~~-~~~~~~--~~~~~~hi~~~v~~~~dv~~ 76 (121)
T cd07266 5 LGHVELRVTDLEKSREFYVDVLGLVETEED---D-DRIYLRGL-EEFIHHS-LVLTKA--PVAGLGHIAFRVRSEEDLDK 76 (121)
T ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeccC---C-CeEEEEec-CCCceEE-EEEeeC--CCCceeEEEEECCCHHHHHH
Confidence 579999999999999999999999987552 1 22222111 1111111 111111 1245679999995 6999
Q ss_pred HHHHHHHcCCeeecC
Q psy18055 78 ACERFEQLGVEFVKK 92 (95)
Q Consensus 78 ~~~~l~~~G~~~~~~ 92 (95)
++++++++|+++...
T Consensus 77 ~~~~l~~~g~~~~~~ 91 (121)
T cd07266 77 AEAFFQELGLPTEWV 91 (121)
T ss_pred HHHHHHHcCCCcccc
Confidence 999999999998764
No 60
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.49 E-value=9.1e-13 Score=71.50 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=55.6
Q ss_pred eeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceee--cccCC----CCCCCCc-ceEEEEeCCH
Q psy18055 3 QTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDL--TYHNG----NSDPRGF-GHIGIQVPDV 75 (95)
Q Consensus 3 hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~g~-~~i~f~v~d~ 75 (95)
+.+|.|+|+++|++||+++|||++.... ..+ ..+...+....... ..... .....+. -|++|.|+|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 77 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DWY--VSLRSPDGGVELAFMLPGHETVPAAQYQFQGQGLILNFEVDDV 77 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----CcE--EEEecCCCceEEEEccCCCCCCcchhcccCCceEEEEEEECCH
Confidence 6789999999999999999999987552 112 12211111111000 00000 0011122 2999999999
Q ss_pred HHHHHHHHHcCCeeecCCC
Q psy18055 76 TKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 76 ~~~~~~l~~~G~~~~~~p~ 94 (95)
++++++++++|+++..+|.
T Consensus 78 d~~~~~l~~~G~~~~~~~~ 96 (119)
T cd08359 78 DAEYERLKAEGLPIVLPLR 96 (119)
T ss_pred HHHHHHHHhcCCCeeeccc
Confidence 9999999999999988775
No 61
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.48 E-value=1.2e-12 Score=69.32 Aligned_cols=87 Identities=26% Similarity=0.368 Sum_probs=60.9
Q ss_pred eeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCC---CCCCcceEEEEeCCHHHHH
Q psy18055 3 QTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNS---DPRGFGHIGIQVPDVTKAC 79 (95)
Q Consensus 3 hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~i~f~v~d~~~~~ 79 (95)
|+++.|+|++++++||+++||++....... ....+.++..++.... ........ ...+..|++|.++|+++++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~~~~i~--l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 76 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLGGTRLE--LFEGDEPAPAPSGGGGVHLAFEVDDVDAAY 76 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecCCceEE--EecCCCCCCcccCCCeeEEEEECCCHHHHH
Confidence 899999999999999999999998877532 1223444443322111 11111111 1234569999999999999
Q ss_pred HHHHHcCCeeecCC
Q psy18055 80 ERFEQLGVEFVKKP 93 (95)
Q Consensus 80 ~~l~~~G~~~~~~p 93 (95)
+++.++|+.+..+|
T Consensus 77 ~~l~~~g~~~~~~~ 90 (112)
T cd06587 77 ERLKAAGVEVLGEP 90 (112)
T ss_pred HHHHHcCCcccCCC
Confidence 99999999988776
No 62
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.46 E-value=8.7e-13 Score=83.73 Aligned_cols=94 Identities=18% Similarity=0.363 Sum_probs=62.8
Q ss_pred CceeEEEEC--CchhcHHHhhhccCCEEeeeeeCCC--Cce-EEEeecCCCC-ccceeecccC-CCC---------CCCC
Q psy18055 1 MQQTMYRIK--DPRKSLPFYTKVLGMSLLKKLDFPA--MKF-SLYFMGNWGT-EKDEDLTYHN-GNS---------DPRG 64 (95)
Q Consensus 1 l~hv~l~v~--d~~~s~~FY~~~lg~~~~~~~~~~~--~~~-~~~~~~~~~~-~~~~~~~~~~-~~~---------~~~g 64 (95)
++|+++.|+ |++++++||+++|||++......+. ... ++......+. ......+... ... ...|
T Consensus 159 iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl~~~~g~G 238 (353)
T TIGR01263 159 IDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFLEFYNGAG 238 (353)
T ss_pred eeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHHHHcCCCC
Confidence 589999999 9999999999999999887655322 122 2222221111 1111111000 000 1245
Q ss_pred cceEEEEeCCHHHHHHHHHHcCCeeecCCC
Q psy18055 65 FGHIGIQVPDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 65 ~~~i~f~v~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
..||+|.|+|+++++++|+++|++++.+|.
T Consensus 239 v~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~ 268 (353)
T TIGR01263 239 VQHIALNTDDIVRTVRALRARGVEFLDTPD 268 (353)
T ss_pred ccEEEEEcCCHHHHHHHHHHcCCccCcCCH
Confidence 669999999999999999999999999884
No 63
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.46 E-value=2.1e-13 Score=72.73 Aligned_cols=85 Identities=26% Similarity=0.391 Sum_probs=56.0
Q ss_pred EEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCc-cceeecccCCCCCCCCcceEEEEeCCHHHHHHHHHH
Q psy18055 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTE-KDEDLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQ 84 (95)
Q Consensus 6 l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~i~f~v~d~~~~~~~l~~ 84 (95)
|.|+|++++++||+++|||++....+ . ...+..+..... .............+.+..|++|.|+|++++++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dv~~~~~~l~~ 76 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP--D--YVDFSLGFRFHDGVIEFLQFPDPPGPPGGGFHLCFEVEDVDALYERLKE 76 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET--S--EEEEEETEEEEEEEEEEEEEESSSSSSSSEEEEEEEESHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC--C--eEEEEeccchhhhhHHHccCCccccCCCceeEEEEEEcCHHHHHHHHHH
Confidence 68999999999999999999988432 1 222222211000 111111111122234556999999999999999999
Q ss_pred cCCeeecCCC
Q psy18055 85 LGVEFVKKPN 94 (95)
Q Consensus 85 ~G~~~~~~p~ 94 (95)
+|+++..+|.
T Consensus 77 ~G~~~~~~~~ 86 (108)
T PF12681_consen 77 LGAEIVTEPR 86 (108)
T ss_dssp TTSEEEEEEE
T ss_pred CCCeEeeCCE
Confidence 9999987764
No 64
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.45 E-value=1.9e-12 Score=80.02 Aligned_cols=88 Identities=22% Similarity=0.411 Sum_probs=57.3
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeC--CCC-ceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCCHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDF--PAM-KFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d~~~ 77 (95)
|+||+|.|+|+++|++||+++|||++..+... +++ .+...++...+..+..... .+. ...+..|++|+|+|.+.
T Consensus 143 l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~--~~~-~~~~~~Hiaf~v~d~~~ 219 (286)
T TIGR03213 143 LGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFA--AGP-SEKRLNHLMLEVDTLDD 219 (286)
T ss_pred ccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEe--cCC-CCCceEEEEEEcCCHHH
Confidence 57999999999999999999999998766432 211 1123344322222211111 111 12456799999998666
Q ss_pred ---HHHHHHHcCCeeecC
Q psy18055 78 ---ACERFEQLGVEFVKK 92 (95)
Q Consensus 78 ---~~~~l~~~G~~~~~~ 92 (95)
++++|+++|+ +...
T Consensus 220 v~~~~~~l~~~G~-~~~~ 236 (286)
T TIGR03213 220 VGLALDRVDADGI-VAST 236 (286)
T ss_pred HHHHHHHHHHCCC-EEec
Confidence 8999999999 4433
No 65
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.44 E-value=3.9e-12 Score=69.18 Aligned_cols=85 Identities=22% Similarity=0.339 Sum_probs=56.8
Q ss_pred ceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCC---HHHH
Q psy18055 2 QQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPD---VTKA 78 (95)
Q Consensus 2 ~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d---~~~~ 78 (95)
-|++|.|+|+++|++||+++||++..... + +... +... +........ ........+..|++|.+++ ++++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~--~-~~~~-~~~~--~~~~~~~~~-~~~~~~~~~~~h~~f~v~~~~dl~~~ 75 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVR--D-DYAK-FLLE--DPRLNFVLN-ERPGAPGGGLNHLGVQVDSAEEVAEA 75 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEeccc--C-CeeE-EEec--CCceEEEEe-cCCCCCCCCeeEEEEEeCCHHHHHHH
Confidence 39999999999999999999999876553 1 2111 2222 111111111 1111111355699999987 8889
Q ss_pred HHHHHHcCCeeecCC
Q psy18055 79 CERFEQLGVEFVKKP 93 (95)
Q Consensus 79 ~~~l~~~G~~~~~~p 93 (95)
+++++++|+++..+|
T Consensus 76 ~~~l~~~G~~~~~~~ 90 (120)
T cd07254 76 KARAEAAGLPTFKEE 90 (120)
T ss_pred HHHHHHcCCeEEccC
Confidence 999999999988765
No 66
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.44 E-value=4e-12 Score=68.38 Aligned_cols=84 Identities=21% Similarity=0.323 Sum_probs=56.0
Q ss_pred eeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCC-ccceeecccCCCCCCCCcceEEEEeCCHHHHHHH
Q psy18055 3 QTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGT-EKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACER 81 (95)
Q Consensus 3 hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~i~f~v~d~~~~~~~ 81 (95)
+..|.|+|+++|++||+++|||++... .+ . ..++...+. ............ +....|++|.|+|+++++++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~-~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~v~d~~~~~~~ 74 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMD----HG-W-IATFASPQNMTVQVSLATEGGT--ATVVPDLSIEVDDVDAALAR 74 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEc----CC-c-eEEEeecCCCCcEEEEecCCCC--CCCCCEEEEEeCCHHHHHHH
Confidence 457899999999999999999997643 11 1 122221121 111111111111 12345999999999999999
Q ss_pred HHHcCCeeecCCC
Q psy18055 82 FEQLGVEFVKKPN 94 (95)
Q Consensus 82 l~~~G~~~~~~p~ 94 (95)
+++.|+++..+|.
T Consensus 75 l~~~G~~~~~~~~ 87 (112)
T cd07238 75 AVAAGFAIVYGPT 87 (112)
T ss_pred HHhcCCeEecCCc
Confidence 9999999988774
No 67
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.44 E-value=1.8e-12 Score=70.75 Aligned_cols=86 Identities=22% Similarity=0.350 Sum_probs=52.8
Q ss_pred eeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceee--------cccCCCCCCCCcceEE--EEe
Q psy18055 3 QTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDL--------TYHNGNSDPRGFGHIG--IQV 72 (95)
Q Consensus 3 hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~i~--f~v 72 (95)
||+|.|+|+++|++||+++||+++..... . +..+...+....... ..........+..|++ |.+
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 75 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----T--WVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSE 75 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----C--cccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeH
Confidence 99999999999999999999999865421 1 111111111000000 0000001112334654 566
Q ss_pred CCHHHHHHHHHHcCCeeecCCC
Q psy18055 73 PDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
+|+++++++|+++|+++..+|.
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~ 97 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPY 97 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcc
Confidence 8999999999999999987763
No 68
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.44 E-value=2.1e-12 Score=69.78 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=56.4
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCCHHHHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACE 80 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d~~~~~~ 80 (95)
++|+.|.|+|+++|++||++ |||++..+. + + .. ++...+....... ...+. ..+..|++|.|+|.+++.+
T Consensus 4 l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~--~-~-~~--~~~~~~~~~~~~~-~~~~~--~~~~~~~af~v~~~~~~~~ 73 (113)
T cd07267 4 IAHVRFEHPDLDKAERFLTD-FGLEVAART--D-D-EL--YYRGYGTDPFVYV-ARKGE--KARFVGAAFEAASRADLEK 73 (113)
T ss_pred EEEEEEccCCHHHHHHHHHH-cCCEEEEec--C-C-eE--EEecCCCccEEEE-cccCC--cCcccEEEEEECCHHHHHH
Confidence 57999999999999999999 999986553 1 2 12 2221222222111 11111 2356699999999999999
Q ss_pred HHHHcCCeeecC
Q psy18055 81 RFEQLGVEFVKK 92 (95)
Q Consensus 81 ~l~~~G~~~~~~ 92 (95)
.+++.|.++..+
T Consensus 74 ~~~~~g~~~~~~ 85 (113)
T cd07267 74 AAALPGASVIDD 85 (113)
T ss_pred HHHcCCCeeecC
Confidence 999999987654
No 69
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.44 E-value=2.4e-12 Score=69.98 Aligned_cols=88 Identities=22% Similarity=0.400 Sum_probs=57.6
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeeccc-C---C---C-CCCCCcceEEEEe
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYH-N---G---N-SDPRGFGHIGIQV 72 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~---~-~~~~g~~~i~f~v 72 (95)
+.|+.|.|.|++++++||+++|||++..+ +++.+..+..+ +.......... . + . ....+..|++|.+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~~~~l~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 75 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRRLAFFWVG--GRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAI 75 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCceEEEEcC--CCcEEEEEecCCcccccCCCCCCCCCCccEEEEEc
Confidence 46899999999999999999999998765 22222222222 21111111100 0 0 0 0113556999998
Q ss_pred C--CHHHHHHHHHHcCCeeecCC
Q psy18055 73 P--DVTKACERFEQLGVEFVKKP 93 (95)
Q Consensus 73 ~--d~~~~~~~l~~~G~~~~~~p 93 (95)
+ |++++++++.++|+++..++
T Consensus 76 ~~~dl~~~~~~l~~~g~~~~~~~ 98 (122)
T cd08354 76 PAEELAEWEAHLEAKGVAIESEV 98 (122)
T ss_pred CHHHHHHHHHHHHhcCCceeccc
Confidence 4 79999999999999987765
No 70
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.43 E-value=3.1e-12 Score=68.47 Aligned_cols=84 Identities=25% Similarity=0.374 Sum_probs=55.6
Q ss_pred eEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCC--CCCCcceEEEEeCCHHHHHHH
Q psy18055 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNS--DPRGFGHIGIQVPDVTKACER 81 (95)
Q Consensus 4 v~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~i~f~v~d~~~~~~~ 81 (95)
..|.|+|++++++||+++|||++..... +.. +.++...+.... +....+.. ...+..|++|.++|+++++++
T Consensus 2 ~~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~--~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (112)
T cd08349 2 PVLPVSDIERSLAFYRDVLGFEVDWEHP--EPG--YAFLSRGGAQLM--LSEHDGDEPVPLGRGGSVYIEVEDVDALYAE 75 (112)
T ss_pred CEEEECCHHHHHHHHHhccCeEEEEEcC--CCc--EEEEEeCCEEEE--EeccCCCCCCCCCCcEEEEEEeCCHHHHHHH
Confidence 3689999999999999999999876642 222 233332222111 11111111 112334899999999999999
Q ss_pred HHHcCCe-eecCC
Q psy18055 82 FEQLGVE-FVKKP 93 (95)
Q Consensus 82 l~~~G~~-~~~~p 93 (95)
++++|++ +..+|
T Consensus 76 l~~~G~~~~~~~~ 88 (112)
T cd08349 76 LKAKGADLIVYPP 88 (112)
T ss_pred HHHcCCcceecCc
Confidence 9999998 55555
No 71
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.42 E-value=1.4e-12 Score=70.17 Aligned_cols=82 Identities=26% Similarity=0.416 Sum_probs=53.9
Q ss_pred eeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCC-CCCCCCcceEEEEeC--CHHHHH
Q psy18055 3 QTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNG-NSDPRGFGHIGIQVP--DVTKAC 79 (95)
Q Consensus 3 hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~i~f~v~--d~~~~~ 79 (95)
|++|.|+|++++++||+++||+++..+.. . ..+..++ +.. ........ .....+..|++|.|+ |+++++
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~--~~~~~~~--~~~--l~~~~~~~~~~~~~~~~hiaf~v~~~d~~~~~ 72 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K--EAYFELA--GLW--ICLMEEDSLQGPERTYTHIAFQIQSEEFDEYT 72 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c--eeEEEec--CeE--EEeccCCCcCCCCCCccEEEEEcCHHHHHHHH
Confidence 89999999999999999999999865531 1 1111111 111 00000000 001134569999995 799999
Q ss_pred HHHHHcCCeeecC
Q psy18055 80 ERFEQLGVEFVKK 92 (95)
Q Consensus 80 ~~l~~~G~~~~~~ 92 (95)
++++++|+++..+
T Consensus 73 ~~l~~~G~~~~~~ 85 (113)
T cd08345 73 ERLKALGVEMKPE 85 (113)
T ss_pred HHHHHcCCccCCC
Confidence 9999999998754
No 72
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.41 E-value=2.8e-12 Score=69.88 Aligned_cols=90 Identities=17% Similarity=0.133 Sum_probs=54.6
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCcc-----ceeecccCCCC-CCCCcceEEEEeC-
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEK-----DEDLTYHNGNS-DPRGFGHIGIQVP- 73 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~g~~~i~f~v~- 73 (95)
|+||+|.|+|+++|++||+ .|||++...... ......... .+... ........+.. ...+..+++|.+.
T Consensus 1 ~~~i~l~V~D~~~a~~FY~-~LGf~~~~~~~~--~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYR-RLGFDFPEEADD--EPHVEAVLP-GGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCET 76 (122)
T ss_pred CceEEEEeccHHHHHHHHH-HhCceecCCcCC--CCcEEEEeC-CCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcCC
Confidence 6899999999999999997 499987543221 011111111 01100 00000011111 1123348888875
Q ss_pred --CHHHHHHHHHHcCCeeecCCC
Q psy18055 74 --DVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 74 --d~~~~~~~l~~~G~~~~~~p~ 94 (95)
|+++++++++++|+++..+|.
T Consensus 77 ~~dvd~~~~~l~~~G~~~~~~~~ 99 (122)
T cd07235 77 PAEVDALYAELVGAGYPGHKEPW 99 (122)
T ss_pred HHHHHHHHHHHHHCCCCcCCCCc
Confidence 799999999999999988775
No 73
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.40 E-value=3.3e-12 Score=68.88 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=52.9
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcce--EEEEeCCHHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGH--IGIQVPDVTKA 78 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--i~f~v~d~~~~ 78 (95)
++|++|.|+|+++|++||+ +|||++.... .. ..++.. ......... ..+. ..+..| +.+.++|++++
T Consensus 3 i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~----~~-~~~~~~-~~~~~~~~~--~~~~--~~~~~~~~~~~~~~d~~~~ 71 (112)
T cd08344 3 IDHFALEVPDLEVARRFYE-AFGLDVREEG----DG-LELRTA-GNDHRWARL--LEGA--RKRLAYLSFGIFEDDFAAF 71 (112)
T ss_pred eeEEEEecCCHHHHHHHHH-HhCCcEEeec----Cc-eEEEec-CCCceEEEe--ecCC--CCceeeEEEEeEhhhHHHH
Confidence 5899999999999999997 7999986542 11 222221 111111111 1111 123344 44455899999
Q ss_pred HHHHHHcCCeeecCC
Q psy18055 79 CERFEQLGVEFVKKP 93 (95)
Q Consensus 79 ~~~l~~~G~~~~~~p 93 (95)
+++++++|+++..+|
T Consensus 72 ~~~l~~~Gi~~~~~~ 86 (112)
T cd08344 72 ARHLEAAGVALAAAP 86 (112)
T ss_pred HHHHHHcCCceecCC
Confidence 999999999988765
No 74
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.40 E-value=4.6e-12 Score=80.46 Aligned_cols=94 Identities=16% Similarity=0.177 Sum_probs=62.8
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCC-------CCCCCCcceEEEEeC
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNG-------NSDPRGFGHIGIQVP 73 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~i~f~v~ 73 (95)
++|+.|.|+|++++++||.+.|||+............ ...++.++.......+.... ...+.+..|++|.|+
T Consensus 3 i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~~-~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~V~ 81 (353)
T TIGR01263 3 FDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREKA-SHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFRVD 81 (353)
T ss_pred eEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCcee-EEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEEEC
Confidence 5799999999999999999999999887632222221 22222222111111110000 011245669999999
Q ss_pred CHHHHHHHHHHcCCeeecCCCC
Q psy18055 74 DVTKACERFEQLGVEFVKKPND 95 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~p~~ 95 (95)
|+++++++++++|+++..+|.+
T Consensus 82 Dv~~a~~~l~~~Ga~~v~~p~~ 103 (353)
T TIGR01263 82 DAAAAFEAAVERGAEPVQAPVE 103 (353)
T ss_pred CHHHHHHHHHHCCCEeccCCcc
Confidence 9999999999999999988863
No 75
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.38 E-value=4.6e-12 Score=78.78 Aligned_cols=84 Identities=24% Similarity=0.437 Sum_probs=57.9
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCC-ccceeecccCCCCCCCCcceEEEEeC---CHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGT-EKDEDLTYHNGNSDPRGFGHIGIQVP---DVT 76 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~i~f~v~---d~~ 76 (95)
++|++|.|+|++++++||+++|||++..+.. . . .++..++. ...... .... ...+..|++|.|+ |++
T Consensus 5 i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~---~--~-~~~~~~~~~~~~~~~-l~~~--~~~g~~hiaf~v~~~~dl~ 75 (303)
T TIGR03211 5 LGHVELRVLDLEESLKHYTDVLGLEETGRDG---Q--R-VYLKAWDEWDHYSVI-LTEA--DTAGLDHMAFKVESEADLE 75 (303)
T ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecC---c--e-EEEEeccccccceEe-eccC--CCCceeEEEEEeCCHHHHH
Confidence 5799999999999999999999999876532 1 1 22221211 111111 1111 1235679999998 699
Q ss_pred HHHHHHHHcCCeeecCC
Q psy18055 77 KACERFEQLGVEFVKKP 93 (95)
Q Consensus 77 ~~~~~l~~~G~~~~~~p 93 (95)
+++++|+++|+++...|
T Consensus 76 ~~~~~l~~~G~~~~~~~ 92 (303)
T TIGR03211 76 RLVKRLEAYGVGTGWIP 92 (303)
T ss_pred HHHHHHHHcCCCeeecc
Confidence 99999999999987655
No 76
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.38 E-value=7.4e-12 Score=77.48 Aligned_cols=85 Identities=22% Similarity=0.244 Sum_probs=57.6
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeC---CHHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVP---DVTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~---d~~~ 77 (95)
++|+.|.|+|++++++||+++|||++..+.. ...++.............. .. ...+..|++|.|+ |+++
T Consensus 5 i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~~~~~~~~~~~~~~~l~l~--~~--~~~~~~hiaf~v~~~~dl~~ 76 (294)
T TIGR02295 5 TGHVELRVTDLDKSREFYVDLLGFRETESDK----EYIYLRGIEEFQHHSLVLT--KA--PSAALSYIGFRVSKEEDLDK 76 (294)
T ss_pred eeEEEEEeCCHHHHHHHHHHccCCEEEEecC----CeEEEeccCcCCceEEEee--eC--CCcCccEEEEEeCCHHHHHH
Confidence 5899999999999999999999999876531 1222221111111111111 11 1235679999997 6999
Q ss_pred HHHHHHHcCCeeecCC
Q psy18055 78 ACERFEQLGVEFVKKP 93 (95)
Q Consensus 78 ~~~~l~~~G~~~~~~p 93 (95)
++++|+++|+++...+
T Consensus 77 ~~~~l~~~Gv~v~~~~ 92 (294)
T TIGR02295 77 AADFFQKLGHPVRLVR 92 (294)
T ss_pred HHHHHHhcCCcEEeec
Confidence 9999999999987654
No 77
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.36 E-value=6.5e-12 Score=68.76 Aligned_cols=90 Identities=18% Similarity=0.130 Sum_probs=55.4
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCcccee-----ecccCCC---CCCCCcceEEEEe
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDED-----LTYHNGN---SDPRGFGHIGIQV 72 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~g~~~i~f~v 72 (95)
+.++.|.|+|+++|++||++ |||+.......+. ...+..+ .+...... ..+.... ..+.+..|++|.|
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v 76 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--AACMVIS-DNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSA 76 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--eEEEEEC-CceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeC
Confidence 46899999999999999986 8999764332211 1111121 11100000 0000000 0112334999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCC
Q psy18055 73 P---DVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 73 ~---d~~~~~~~l~~~G~~~~~~p~ 94 (95)
+ ++++++++++++|+++..+|.
T Consensus 77 ~~~~~vd~~~~~l~~~G~~i~~~p~ 101 (124)
T cd09012 77 DSREEVDELVEKALAAGGKEFREPQ 101 (124)
T ss_pred CCHHHHHHHHHHHHHCCCcccCCcc
Confidence 8 588999999999999998875
No 78
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.36 E-value=1.1e-11 Score=66.85 Aligned_cols=86 Identities=21% Similarity=0.370 Sum_probs=55.1
Q ss_pred eEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCC--CCCCCcceEEEEeCC---HHHH
Q psy18055 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGN--SDPRGFGHIGIQVPD---VTKA 78 (95)
Q Consensus 4 v~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~i~f~v~d---~~~~ 78 (95)
+.|.|+|+++|++||+++||+++.... ..+...... .+............. ....+..|++|.+++ ++.+
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 76 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFALFVLG-SGVKLGLWSRHTVEPASDATGGGSELAFMVDDGAAVDAL 76 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceEEEEeC-CCcEEEEeeccccCCCCCCCCCceEEEEEcCCHHHHHHH
Confidence 679999999999999999999976542 122222221 111111100000000 011344599999985 8899
Q ss_pred HHHHHHcCCeeecCCC
Q psy18055 79 CERFEQLGVEFVKKPN 94 (95)
Q Consensus 79 ~~~l~~~G~~~~~~p~ 94 (95)
+++++++|+++..+|.
T Consensus 77 ~~~~~~~g~~v~~~~~ 92 (114)
T cd07261 77 YAEWQAKGVKIIQEPT 92 (114)
T ss_pred HHHHHHCCCeEecCcc
Confidence 9999999999998874
No 79
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.34 E-value=8.5e-12 Score=77.10 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=57.3
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCC---HHH
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPD---VTK 77 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d---~~~ 77 (95)
++|++|.|+|+++|++||+++|||++..+. ..+ ..+..+. ........ ...+ ..+..|++|.|++ +++
T Consensus 4 i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~--~~~-~~~~~~~--~~~~~~~l-~~~~---~~~~~~~~f~V~~~~~l~~ 74 (286)
T TIGR03213 4 LGYLGIGVSDVDAWREFATEVLGMMVASEG--END-ALYLRLD--SRAHRIAV-HPGE---SDDLAYAGWEVADEAGLDQ 74 (286)
T ss_pred eeEEEEEeCCHHHHHHHHHhccCcccccCC--CCc-eEEEEcC--CCceEEEE-EECC---cCCeeeEeeeeCCHHHHHH
Confidence 579999999999999999999999876442 112 1121222 11111111 1111 1356699999998 899
Q ss_pred HHHHHHHcCCeeecCC
Q psy18055 78 ACERFEQLGVEFVKKP 93 (95)
Q Consensus 78 ~~~~l~~~G~~~~~~p 93 (95)
+.++|+++|+++...|
T Consensus 75 ~~~~L~~~Gv~~~~~~ 90 (286)
T TIGR03213 75 VKEKLEKAGVAVTVAS 90 (286)
T ss_pred HHHHHHHcCCceEECC
Confidence 9999999999987654
No 80
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.33 E-value=2.3e-11 Score=66.26 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=51.6
Q ss_pred eeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCCHHHHHHHH
Q psy18055 3 QTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACERF 82 (95)
Q Consensus 3 hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d~~~~~~~l 82 (95)
..+|.|+|+++|++||++ |||++..+.. . . +..+...+.... +.............+++|.|+|+++++++|
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~--~-~--~~~~~~~~~~l~--l~~~~~~~~~~~~~~~~~~v~dvd~~~~~l 76 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQA--A-G--YMILRRGDLELH--FFAHPDLDPATSPFGCCLRLPDVAALHAEF 76 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCC--C-C--EEEEEcCCEEEE--EEecCcCCCCCCcceEEEEeCCHHHHHHHH
Confidence 367999999999999999 9999876532 1 2 233332222111 111111111112248999999999999999
Q ss_pred HHcCCee
Q psy18055 83 EQLGVEF 89 (95)
Q Consensus 83 ~~~G~~~ 89 (95)
+++|+++
T Consensus 77 ~~~G~~~ 83 (120)
T cd08350 77 RAAGLPE 83 (120)
T ss_pred HHhCccc
Confidence 9999974
No 81
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.28 E-value=2.4e-11 Score=77.93 Aligned_cols=93 Identities=10% Similarity=0.207 Sum_probs=62.6
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCC-----ceEEEeecCCCC--ccceeecccC--CCC---------CC
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAM-----KFSLYFMGNWGT--EKDEDLTYHN--GNS---------DP 62 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~--~~~---------~~ 62 (95)
++|+++.|.++++++.||+++|||+..+....+.- ++....+..+.. ......+... .+. ..
T Consensus 181 IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL~~~~G 260 (398)
T PLN02875 181 LDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYLEHNEG 260 (398)
T ss_pred eCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHHHhcCC
Confidence 58999999999999999999999988765543221 223333332221 1111111100 000 02
Q ss_pred CCcceEEEEeCCHHHHHHHHHHc----CCeeecCC
Q psy18055 63 RGFGHIGIQVPDVTKACERFEQL----GVEFVKKP 93 (95)
Q Consensus 63 ~g~~~i~f~v~d~~~~~~~l~~~----G~~~~~~p 93 (95)
.|..||+|.|+|+.+..++|+++ |++++..|
T Consensus 261 ~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 261 PGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred CCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 46779999999999999999999 99999965
No 82
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.25 E-value=4.1e-11 Score=64.82 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=50.6
Q ss_pred eEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCCHHHHHHHHH
Q psy18055 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACERFE 83 (95)
Q Consensus 4 v~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d~~~~~~~l~ 83 (95)
..|.|+|+++|++||++ |||++.... ..+ .++...+.... +. ........+..+++|.|+|+++++++|+
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~----~~~--~~l~~~~~~l~--l~-~~~~~~~~~~~~~~~~v~did~~~~~l~ 74 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN----DNL--AYFRLGNCAFY--LQ-DYYVKDWAENSMLHLEVDDLEAYYEHIK 74 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC----CCE--EEEEcCCEEEE--ee-cCCCcccccCCEEEEEECCHHHHHHHHH
Confidence 46889999999999987 999987663 222 23332222111 11 1111111233489999999999999999
Q ss_pred HcCCeee
Q psy18055 84 QLGVEFV 90 (95)
Q Consensus 84 ~~G~~~~ 90 (95)
++|+++.
T Consensus 75 ~~G~~~~ 81 (113)
T cd08356 75 ALGLPKK 81 (113)
T ss_pred HcCCccc
Confidence 9998753
No 83
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.21 E-value=1.6e-10 Score=62.62 Aligned_cols=86 Identities=19% Similarity=0.126 Sum_probs=52.1
Q ss_pred eEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceee---ccc-CCC---CCCCCcceEEEEe---C
Q psy18055 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDL---TYH-NGN---SDPRGFGHIGIQV---P 73 (95)
Q Consensus 4 v~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~---~~~~g~~~i~f~v---~ 73 (95)
|+|.|+|+++|++||+++|||++..+. ...+. ++...+....... ... .+. ....+..+++|.+ +
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---NDGVA--FFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEE 76 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CCceE--EEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHH
Confidence 789999999999999999999987661 11222 2221111110000 000 000 0111222566665 5
Q ss_pred CHHHHHHHHHHcCCeeecCCC
Q psy18055 74 DVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~p~ 94 (95)
|++.+++++++.|+++..+|.
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~ 97 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQ 97 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCc
Confidence 799999999999999988774
No 84
>KOG0638|consensus
Probab=99.11 E-value=3.8e-10 Score=69.80 Aligned_cols=90 Identities=14% Similarity=0.302 Sum_probs=64.0
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCC------------CceEEEeecCCCCcc--ceeecccCCCCCCCCcc
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPA------------MKFSLYFMGNWGTEK--DEDLTYHNGNSDPRGFG 66 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~ 66 (95)
++||.++|.|...++.||+..|||++....+.+. +.....+.....+.. .......+|. |..
T Consensus 18 f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgd----gvk 93 (381)
T KOG0638|consen 18 FHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGD----GVK 93 (381)
T ss_pred eeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhccc----chh
Confidence 6899999999999999999999999877543222 233333333222211 1112223332 455
Q ss_pred eEEEEeCCHHHHHHHHHHcCCeeecCCC
Q psy18055 67 HIGIQVPDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 67 ~i~f~v~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
-+||+|+|++.+.+.+.++|+++..+|.
T Consensus 94 dvafeVeD~da~~~~~va~Ga~v~~~p~ 121 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEAVANGAKVVRPPW 121 (381)
T ss_pred ceEEEecchHHHHHHHHHcCCcccCCcc
Confidence 8999999999999999999999999985
No 85
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.10 E-value=4.7e-10 Score=60.11 Aligned_cols=87 Identities=25% Similarity=0.341 Sum_probs=56.0
Q ss_pred ceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeeccc-----CCCCCCCC--cce--EEEEe
Q psy18055 2 QQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYH-----NGNSDPRG--FGH--IGIQV 72 (95)
Q Consensus 2 ~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g--~~~--i~f~v 72 (95)
=|.++.|+|++++++||.++||++..+..+ .|+-+...+++....+... .++....+ ..| +.+.+
T Consensus 6 FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvVl~~ 79 (138)
T COG3565 6 FHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVVLPV 79 (138)
T ss_pred eEEeeeccccHHHHhhhhhhcccccccccc------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceEEEEH
Confidence 389999999999999999999999776532 1222222333322211111 11111111 124 44557
Q ss_pred CCHHHHHHHHHHcCCeeecCCC
Q psy18055 73 PDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
+|+-++.++|+++|+.+..+|.
T Consensus 80 edW~alaerlea~gi~~~i~P~ 101 (138)
T COG3565 80 EDWFALAERLEAAGIPFHIPPK 101 (138)
T ss_pred HHHHHHHHHHHHcCCCcccCce
Confidence 7999999999999999988884
No 86
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.05 E-value=4.9e-09 Score=58.42 Aligned_cols=91 Identities=21% Similarity=0.253 Sum_probs=58.1
Q ss_pred EEEEC-CchhcHHHhhhccCCEEeeeeeCCC----------CceEEEeecCCCCccceeecccCCCCCC-CCc-ceEEEE
Q psy18055 5 MYRIK-DPRKSLPFYTKVLGMSLLKKLDFPA----------MKFSLYFMGNWGTEKDEDLTYHNGNSDP-RGF-GHIGIQ 71 (95)
Q Consensus 5 ~l~v~-d~~~s~~FY~~~lg~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~-~~i~f~ 71 (95)
-|..+ |.+++++||+++||.+...+....+ +.+-...+...++............... .+. -.+.+.
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~~~~~~~~s~~l~~~ 84 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMGATEGGGTSLSLDLY 84 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccCcccCCCeeEEEEEE
Confidence 46677 9999999999999999988876544 3333333332222211111111111111 112 277778
Q ss_pred eCCHHHHHHHHHHcCCeeecCCCC
Q psy18055 72 VPDVTKACERFEQLGVEFVKKPND 95 (95)
Q Consensus 72 v~d~~~~~~~l~~~G~~~~~~p~~ 95 (95)
++|++++++++.+.|++++.|+.+
T Consensus 85 ~~d~da~f~~a~~aGa~v~mpl~~ 108 (136)
T COG2764 85 VEDVDAVFERAAAAGATVVMPLED 108 (136)
T ss_pred ehHHHHHHHHHHhcCCeEEecchh
Confidence 889999999999999999988763
No 87
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.98 E-value=1.9e-08 Score=55.51 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=53.2
Q ss_pred eEEEE-CCchhcHHHhhhccCCEEeeeeeCC----------CCceEEEeecCCCCccceeecccCCCC-CCCCcceEEEE
Q psy18055 4 TMYRI-KDPRKSLPFYTKVLGMSLLKKLDFP----------AMKFSLYFMGNWGTEKDEDLTYHNGNS-DPRGFGHIGIQ 71 (95)
Q Consensus 4 v~l~v-~d~~~s~~FY~~~lg~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~i~f~ 71 (95)
..|.+ .|.+++++||+++||.++......+ .+.+....+...+......... .... .+.+..++++.
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~-~~~~~~~~~~~~l~i~ 81 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGG-PGFPFTFGNGISLSVE 81 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCC-CCCCCCCCCCEEEEEE
Confidence 45777 8999999999999999998775421 1222233333222221110010 1110 11223388999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCC
Q psy18055 72 VPD---VTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 72 v~d---~~~~~~~l~~~G~~~~~~p~ 94 (95)
|+| +++++++|++.| +++.+|.
T Consensus 82 ~~~~e~v~~~~~~l~~~g-~~~~~~~ 106 (128)
T cd06588 82 CDSEEEADRLFEALSEGG-TVLMPLQ 106 (128)
T ss_pred CCCHHHHHHHHHHHhcCC-eEeccch
Confidence 886 778889987766 8887764
No 88
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.95 E-value=3e-09 Score=66.69 Aligned_cols=94 Identities=18% Similarity=0.302 Sum_probs=61.6
Q ss_pred CceeEEEEC--CchhcHHHhhhccCCEEeeeeeCCCC--ceEEEee-cCCCCccceeecccCCCC---------CCCCcc
Q psy18055 1 MQQTMYRIK--DPRKSLPFYTKVLGMSLLKKLDFPAM--KFSLYFM-GNWGTEKDEDLTYHNGNS---------DPRGFG 66 (95)
Q Consensus 1 l~hv~l~v~--d~~~s~~FY~~~lg~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~g~~ 66 (95)
++|++..|. .++....||+.+|||......+.++. ....--+ ...+..-.+.......+. ...|..
T Consensus 168 IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~GIQ 247 (363)
T COG3185 168 IDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRGEGIQ 247 (363)
T ss_pred echhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCCCcce
Confidence 467776665 79999999999999999888765543 2211111 111111111000001111 124667
Q ss_pred eEEEEeCCHHHHHHHHHHcCCeeecCCC
Q psy18055 67 HIGIQVPDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 67 ~i~f~v~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
||+|.++|+-++.++++++|++++..|.
T Consensus 248 HIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 248 HIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred EEEecccHHHHHHHHHHHcCCccCCCch
Confidence 9999999999999999999999999885
No 89
>KOG2943|consensus
Probab=98.87 E-value=4.5e-09 Score=63.00 Aligned_cols=86 Identities=31% Similarity=0.492 Sum_probs=62.2
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCC-----------CceEEEeecCC--CCccceeecccCCCCC---CCC
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPA-----------MKFSLYFMGNW--GTEKDEDLTYHNGNSD---PRG 64 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~g 64 (95)
+-|+++.|.|.++++.||+++|||++.+...++. +.|+-.+++.+ ++++..++.+..|... ..+
T Consensus 18 ~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~YelGnd 97 (299)
T KOG2943|consen 18 ALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYELGND 97 (299)
T ss_pred eeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceeccCC
Confidence 3599999999999999999999999998876655 45555666532 2333444555444321 246
Q ss_pred cceEEEEeCCHHHHHHHHHHcC
Q psy18055 65 FGHIGIQVPDVTKACERFEQLG 86 (95)
Q Consensus 65 ~~~i~f~v~d~~~~~~~l~~~G 86 (95)
++||.+.++|+-...+.+..-|
T Consensus 98 fg~i~I~s~dv~~~ve~v~~p~ 119 (299)
T KOG2943|consen 98 FGGITIASDDVFSKVEKVNAPG 119 (299)
T ss_pred cccEEEeHHHHHHHHHHhcCcC
Confidence 7799999999888888887743
No 90
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.85 E-value=1.9e-08 Score=64.82 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=61.4
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCc--eEEEeecCCCCccceeecc----------------cCC----
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMK--FSLYFMGNWGTEKDEDLTY----------------HNG---- 58 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----------------~~~---- 58 (95)
++||.++|.|.++++.||++.|||+.........+. .....++..........+. .+.
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 689999999999999999999999988766532221 1111122111000000000 000
Q ss_pred ------CCCCCCcceEEEEeCCHHHHHHHHHHcCCeeecCCC
Q psy18055 59 ------NSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 59 ------~~~~~g~~~i~f~v~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
..++.+..-++|+|+|++.+++++.++|++...+|.
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~ 122 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPT 122 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCc
Confidence 011235558999999999999999999999988875
No 91
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.82 E-value=2.5e-08 Score=57.83 Aligned_cols=88 Identities=10% Similarity=0.151 Sum_probs=44.5
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecc----c--CCCC-------CCCCcce
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTY----H--NGNS-------DPRGFGH 67 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~-------~~~g~~~ 67 (95)
|+|+++.|+|+++++++|++.+||++.....-+..++.-..+...+.-.+.+... . .+.. ...|...
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYG 80 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEE
Confidence 6899999999999999999999999887655444233222222111111111100 0 0000 1234559
Q ss_pred EEEEeCCHHHHHHHHHHcCCe
Q psy18055 68 IGIQVPDVTKACERFEQLGVE 88 (95)
Q Consensus 68 i~f~v~d~~~~~~~l~~~G~~ 88 (95)
++|.++|+++..+++++.|++
T Consensus 81 ~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 81 WALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp EEEE-S-HHHHHHHHHTTT-E
T ss_pred EEEecCCHHHHHHHHHhcCCC
Confidence 999999999999999999975
No 92
>KOG2943|consensus
Probab=98.78 E-value=9.9e-09 Score=61.55 Aligned_cols=88 Identities=28% Similarity=0.438 Sum_probs=60.8
Q ss_pred ceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCC-CCCCcceEEEEeC--CHHHH
Q psy18055 2 QQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNS-DPRGFGHIGIQVP--DVTKA 78 (95)
Q Consensus 2 ~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~i~f~v~--d~~~~ 78 (95)
..|.|.|.|+++|+.||+++|||++.... ...+...++....+...++....+.. ...+.+.++|.++ ++..+
T Consensus 151 ~~V~l~VgdL~ks~kyw~~~lgM~ileke----ek~t~~~mgYgd~q~~LElt~~~~~id~~kg~griafaip~d~~~~l 226 (299)
T KOG2943|consen 151 LQVMLNVGDLQKSIKYWEKLLGMKILEKE----EKYTRARMGYGDEQCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKL 226 (299)
T ss_pred EEEEEEehhHHHHHHHHHHHhCcchhhhh----hhhhhhhhccCCcceEEEEEeccCcccccccceeEEEeccccccccH
Confidence 57899999999999999999999987752 11233445533333433343333332 2467788888875 68888
Q ss_pred HHHHHHcCCeeecCC
Q psy18055 79 CERFEQLGVEFVKKP 93 (95)
Q Consensus 79 ~~~l~~~G~~~~~~p 93 (95)
-+.++..+.+|+.+.
T Consensus 227 ~e~iK~~n~~i~~~l 241 (299)
T KOG2943|consen 227 QEAIKSANGTILTPL 241 (299)
T ss_pred HHHHHHhccccccce
Confidence 888888877776654
No 93
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.70 E-value=2e-07 Score=56.84 Aligned_cols=83 Identities=19% Similarity=0.346 Sum_probs=55.2
Q ss_pred ceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCcc-ceeecccCCCC--CCCCcceEEEEeCC---H
Q psy18055 2 QQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEK-DEDLTYHNGNS--DPRGFGHIGIQVPD---V 75 (95)
Q Consensus 2 ~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~g~~~i~f~v~d---~ 75 (95)
+-+.|.|+|++++..||++++|+++..+.. . . ..++..+... ........+.+ ...|+=|++|-+++ +
T Consensus 12 ~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~---~--~-v~L~vgg~~LL~L~q~~~a~~~~~~~aGLyH~AfLlP~r~~L 85 (265)
T COG2514 12 GAVTLNVRDLDSMTSFYQEILGLQVLEETD---G--S-VTLGVGGTPLLTLEQFPDARRPPPRAAGLYHTAFLLPTREDL 85 (265)
T ss_pred EEEEEEeccHHHHHHHHHHhhCCeeeeccC---c--e-EEEeeCCEEEEEEEeCCCCCCCCccccceeeeeeecCCHHHH
Confidence 468999999999999999999999887632 1 1 2222222211 11111111111 22455599999985 8
Q ss_pred HHHHHHHHHcCCeee
Q psy18055 76 TKACERFEQLGVEFV 90 (95)
Q Consensus 76 ~~~~~~l~~~G~~~~ 90 (95)
.++..++.+.|+++.
T Consensus 86 ~~~l~hl~~~~~~l~ 100 (265)
T COG2514 86 ARVLNHLAEEGIPLV 100 (265)
T ss_pred HHHHHHHHhcCCccc
Confidence 889999999999886
No 94
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.55 E-value=4.2e-07 Score=57.53 Aligned_cols=82 Identities=18% Similarity=0.288 Sum_probs=53.4
Q ss_pred ceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeCC---HHHH
Q psy18055 2 QQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPD---VTKA 78 (95)
Q Consensus 2 ~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~d---~~~~ 78 (95)
-||+|.|+|+++|++||+.+|++.. . .++. ..+. +.+.... .. ....+.......+|+++++ ++++
T Consensus 249 IfVNLpV~DL~rS~~FYt~LF~~n~-F----sde~-a~cm---~dtI~vM-ll-t~~D~~~~~evLl~Ls~~Sre~VD~l 317 (357)
T PRK01037 249 FSVVLEVQDLRRAKKFYSKMFGLEC-W----DGDK-LFLL---GKTSLYL-QQ-TKAEKKNRGTTTLSLELECEHDFVRF 317 (357)
T ss_pred EEEEeeeCCHHHHHHHHHHHhCCCC-C----CCCc-cccc---cCcEEEE-Ee-cCCCCCCcceEEEEeccCCHHHHHHH
Confidence 3899999999999999999988873 2 2221 1111 2221111 11 1112222334589999985 9999
Q ss_pred HHHHHHcCCeeecCCC
Q psy18055 79 CERFEQLGVEFVKKPN 94 (95)
Q Consensus 79 ~~~l~~~G~~~~~~p~ 94 (95)
.++..++|.+...+|.
T Consensus 318 v~~A~aaGG~~~~~~~ 333 (357)
T PRK01037 318 LRRWEMLGGELGEQAD 333 (357)
T ss_pred HHHHHHcCCCCCCCcc
Confidence 9999999997766665
No 95
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.49 E-value=1.4e-07 Score=50.95 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=28.6
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeee
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLD 31 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~ 31 (95)
++|++|.|+|+++|++||+++||+++.....
T Consensus 3 l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 3 IHHVTLAVPDLEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred eEEEEEeeCCHhHhHHHHHhhcCCeeeeecc
Confidence 5799999999999999999999999988754
No 96
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.48 E-value=7.1e-07 Score=48.67 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=54.0
Q ss_pred eeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCC-------CCccceeecc-cCCCCCCCCcceEEEEeCC
Q psy18055 3 QTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNW-------GTEKDEDLTY-HNGNSDPRGFGHIGIQVPD 74 (95)
Q Consensus 3 hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~g~~~i~f~v~d 74 (95)
.|+|.|+|+++|++||+ .||++....+..+. ..+.+-.. ...+.-.... ..+.......-.|++++.+
T Consensus 6 FvNLPVkDL~~S~~Fy~-alGfk~Npq~sde~---a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls~~s 81 (133)
T COG3607 6 FVNLPVKDLEASKAFYT-ALGFKFNPQFSDED---AACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLSAGS 81 (133)
T ss_pred EEecchhhHHHHHHHHH-HhCcccCCCccccc---ceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEeccCc
Confidence 58899999999999995 89999876653222 11111100 0000000000 0011111233488898874
Q ss_pred ---HHHHHHHHHHcCCeeecCCCC
Q psy18055 75 ---VTKACERFEQLGVEFVKKPND 95 (95)
Q Consensus 75 ---~~~~~~~l~~~G~~~~~~p~~ 95 (95)
++++.++..++|.+...+|.+
T Consensus 82 ~eevd~~v~ka~eaGGk~~~~~~d 105 (133)
T COG3607 82 REEVDELVDKALEAGGKPANEPQD 105 (133)
T ss_pred HHHHHHHHHHHHHcCCCCCCCccc
Confidence 999999999999999888753
No 97
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.14 E-value=9.2e-06 Score=45.60 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=52.6
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCC------CCCCCcceEEEEeCC
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGN------SDPRGFGHIGIQVPD 74 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~i~f~v~d 74 (95)
++||.+.+.+.++...++ +.|||+...+... ....++.-+ .... .......+. .+..+..-++|.|+|
T Consensus 10 ~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hrs--k~v~l~rQG--~I~~-vln~ep~s~a~~~~~~HG~sv~aiafrV~D 83 (139)
T PF14696_consen 10 FDFVEFAVPDAQALAQLF-TALGFQPVARHRS--KDVTLYRQG--DINF-VLNSEPDSFAAEFAAQHGPSVCAIAFRVDD 83 (139)
T ss_dssp EEEEEEE-SSTTSCHHHH-CCCCEEEECCECC--CSEEEEEET--TEEE-EEEEESTSCHHHHHHHHSSEEEEEEEEES-
T ss_pred eEEEEEecCCHHHHHHHH-HHhCcceEEecCC--cceEEEEeC--CEEE-EEeCCCcchHHHHHHhcCCEEEEEEEEeCC
Confidence 478999999988888877 6899999988743 223222211 1111 000000000 011355689999999
Q ss_pred HHHHHHHHHHcCCeeecCC
Q psy18055 75 VTKACERFEQLGVEFVKKP 93 (95)
Q Consensus 75 ~~~~~~~l~~~G~~~~~~p 93 (95)
...++++..+.|.+...+|
T Consensus 84 a~~A~~rA~~~GA~~~~~~ 102 (139)
T PF14696_consen 84 AAAAYERAVALGAEPVQEP 102 (139)
T ss_dssp HHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHcCCcCcccC
Confidence 9999999999999887665
No 98
>PRK10148 hypothetical protein; Provisional
Probab=98.10 E-value=0.00016 Score=40.97 Aligned_cols=89 Identities=11% Similarity=0.102 Sum_probs=48.6
Q ss_pred eEEEEC-CchhcHHHhhhccCCEEeeeee---C-----------------CCCceEEEeecCCCCccceeecccCCCCCC
Q psy18055 4 TMYRIK-DPRKSLPFYTKVLGMSLLKKLD---F-----------------PAMKFSLYFMGNWGTEKDEDLTYHNGNSDP 62 (95)
Q Consensus 4 v~l~v~-d~~~s~~FY~~~lg~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (95)
.-|... |.+++++||+++||.++..... . +.+.+....+...+......... .+....
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~-~~~~~~ 83 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAI-PSGKAH 83 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCC-CCcCCC
Confidence 345664 8999999999999988765432 1 11222233333222211110000 011111
Q ss_pred CCcceEEEEeCCHHH---HHHHHHHcCCeeecCCC
Q psy18055 63 RGFGHIGIQVPDVTK---ACERFEQLGVEFVKKPN 94 (95)
Q Consensus 63 ~g~~~i~f~v~d~~~---~~~~l~~~G~~~~~~p~ 94 (95)
...-++++.++|.++ +++.| +.|.+++.|+.
T Consensus 84 ~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~ 117 (147)
T PRK10148 84 YSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQ 117 (147)
T ss_pred CCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecch
Confidence 112378888888665 66766 58899888775
No 99
>KOG0638|consensus
Probab=98.09 E-value=1.7e-06 Score=54.03 Aligned_cols=94 Identities=19% Similarity=0.284 Sum_probs=60.4
Q ss_pred CceeEEEEC--CchhcHHHhhhccCCEEeeeeeCCCCceEEEeec-----CCC-CccceeecccCCCCC-----------
Q psy18055 1 MQQTMYRIK--DPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMG-----NWG-TEKDEDLTYHNGNSD----------- 61 (95)
Q Consensus 1 l~hv~l~v~--d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~----------- 61 (95)
++|++..++ .++.+.+||.++|||.--+..+.+.-......++ +.. +...++.-..+|...
T Consensus 179 iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinEp~~G~k~ksQIqeyv~y~ 258 (381)
T KOG0638|consen 179 IDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINEPAPGKKKKSQIQEYVEYH 258 (381)
T ss_pred hhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccCCCCCCccHHHHHHHHHhc
Confidence 578999999 5889999999999998766654222111111111 111 100011111122211
Q ss_pred -CCCcceEEEEeCCHHHHHHHHHHcCCeeecCCC
Q psy18055 62 -PRGFGHIGIQVPDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 62 -~~g~~~i~f~v~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
.+|..||++.++|+-.+.+.|+++|.+++.+|.
T Consensus 259 gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps 292 (381)
T KOG0638|consen 259 GGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPS 292 (381)
T ss_pred CCCceeeeeecchHHHHHHHHHHhcCCccccCCH
Confidence 246679999999999999999999999999884
No 100
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.08 E-value=2.2e-05 Score=48.10 Aligned_cols=29 Identities=21% Similarity=0.505 Sum_probs=27.4
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeee
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKK 29 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~ 29 (95)
+.||.|.|.|++++.+||+++|||+...+
T Consensus 169 IGHvHL~v~~l~eA~~fY~~~LG~~~~~~ 197 (265)
T COG2514 169 IGHVHLKVADLEEAEQFYEDVLGLEVTAR 197 (265)
T ss_pred EeEEEEEeCCHHHHHHHHHHhcCCeeeec
Confidence 47999999999999999999999999887
No 101
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=97.77 E-value=0.00045 Score=37.71 Aligned_cols=70 Identities=24% Similarity=0.417 Sum_probs=39.5
Q ss_pred ceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCC-----CCCCcceEEEEeCCHH
Q psy18055 2 QQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNS-----DPRGFGHIGIQVPDVT 76 (95)
Q Consensus 2 ~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~i~f~v~d~~ 76 (95)
-+-+|.|.|-+..++||++.|||++..+.. ..+.++.+....-..+-..++.. .++-.+++.+.|++-.
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 467899999999999999999999987742 13444433211111111111221 1234569999998744
Q ss_pred H
Q psy18055 77 K 77 (95)
Q Consensus 77 ~ 77 (95)
+
T Consensus 76 E 76 (125)
T PF14506_consen 76 E 76 (125)
T ss_dssp H
T ss_pred H
Confidence 3
No 102
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.86 E-value=0.019 Score=31.28 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=38.8
Q ss_pred CCchhcHHHhhhccCC-EEeeeeeCCC------CceEEEeecCCCCccceeecccCCCCCCCC-cceEEEEeCC---HHH
Q psy18055 9 KDPRKSLPFYTKVLGM-SLLKKLDFPA------MKFSLYFMGNWGTEKDEDLTYHNGNSDPRG-FGHIGIQVPD---VTK 77 (95)
Q Consensus 9 ~d~~~s~~FY~~~lg~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~i~f~v~d---~~~ 77 (95)
.+.++|.+||.++||- ++......++ +..-...+...+.... ....+...+.+ .-.+++.++| +++
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm---~~D~~~~~~~~~~~sl~i~~~~~ee~~~ 87 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLM---ASDGGPDFPFGNNISLCIECDDEEEIDR 87 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEE---EEEESTS----TTEEEEEEESSHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEE---EECCCCCCCCCCcEEEEEEcCCHHHHHH
Confidence 6899999999999984 3333322222 1222222222222111 11111111122 2378888886 777
Q ss_pred HHHHHHHcCC
Q psy18055 78 ACERFEQLGV 87 (95)
Q Consensus 78 ~~~~l~~~G~ 87 (95)
++++|.+.|-
T Consensus 88 ~f~~Ls~gG~ 97 (116)
T PF06983_consen 88 IFDKLSEGGQ 97 (116)
T ss_dssp HHHHHHTTTE
T ss_pred HHHHHHcCCC
Confidence 8899988773
No 103
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=96.30 E-value=0.037 Score=35.65 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=54.2
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeec-------CCCCccceeecccCCCCCCCCcceEEEEeC
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMG-------NWGTEKDEDLTYHNGNSDPRGFGHIGIQVP 73 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~ 73 (95)
+.+|.+.|.|.+++..=|-..|||+...++.... +.++.-+ .....+....... ++++..-++|.|+
T Consensus 23 feFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk~--v~l~rQGdinlvvn~~~~s~a~~f~~~----Hgps~~a~a~~V~ 96 (363)
T COG3185 23 FEFVEFAVPDPQEALGALLGQLGFTAVAKHRSKA--VTLYRQGDINLVVNAEPDSFAAEFLDK----HGPSACAMAFRVD 96 (363)
T ss_pred eeEEEEecCCHHHHHHHHHHHhCccccccccccc--eeEEEeCCEEEEEcCCCcchhhHHHHh----cCCchheeEEeeC
Confidence 4689999999965555566899999887765332 2222211 0000010011111 2235568999999
Q ss_pred CHHHHHHHHHHcCCeeecCC
Q psy18055 74 DVTKACERFEQLGVEFVKKP 93 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~p 93 (95)
|....+++..+.|.+...++
T Consensus 97 DA~~A~a~A~a~gA~~~~~~ 116 (363)
T COG3185 97 DAEQALARALALGARTIDTE 116 (363)
T ss_pred CHHHHHHHHHHcCCccccCC
Confidence 99999999999999554443
No 104
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=94.76 E-value=0.029 Score=29.84 Aligned_cols=29 Identities=10% Similarity=0.282 Sum_probs=24.6
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeee
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKL 30 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~ 30 (95)
++|+++.|.|++++++-+++ .|+++....
T Consensus 69 i~Hia~~v~D~d~~~~~l~~-~G~~~~~~~ 97 (109)
T PF13669_consen 69 IHHIAFEVDDLDAAIARLEA-QGFRVLDEG 97 (109)
T ss_dssp EEEEEEEESHHHHHHHHHHH-TTECEEECE
T ss_pred EEEEEEEeCCHHHHHHHHHH-CCCEEcccC
Confidence 58999999999999999975 588876653
No 105
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=94.33 E-value=0.022 Score=30.35 Aligned_cols=69 Identities=26% Similarity=0.410 Sum_probs=28.3
Q ss_pred ceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecCCCCccceeecccCCCCCCCCcceEEEEeC---CHHHH
Q psy18055 2 QQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVP---DVTKA 78 (95)
Q Consensus 2 ~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~f~v~---d~~~~ 78 (95)
.-+.|.|.| +++.+||+++||-.. ...+.+....|.+. .. .+...=+...+-|.|+ |+.++
T Consensus 7 e~i~LNV~d-~~~~~fy~~~f~~~~---------~~~l~f~ea~G~DL----~~--~~~~twDLe~Lkf~V~~~~Dl~~L 70 (101)
T PF14507_consen 7 ESIELNVPD-AKSQSFYQSIFGGQL---------PFFLTFQEAQGPDL----TI--ENNETWDLEMLKFQVPKDFDLAAL 70 (101)
T ss_dssp -EEEEEE-T--T---S--H---HHH---------TTTEEEEE---CCG----SS---TTSBSSEEEEEEEES-S--HHHH
T ss_pred EEEEEeCCC-hhHHHHHHhccccCC---------CceEEEeeccCCcc----cc--CCCcEEeeEEEEEEecCcccHHHH
Confidence 357899999 889999999997211 11233333222221 11 1111124457777777 57777
Q ss_pred HHHHHHcC
Q psy18055 79 CERFEQLG 86 (95)
Q Consensus 79 ~~~l~~~G 86 (95)
.+++.+.+
T Consensus 71 ~~~le~~~ 78 (101)
T PF14507_consen 71 KSHLEEQE 78 (101)
T ss_dssp HHHTTTS-
T ss_pred HHHhcccc
Confidence 78777643
No 106
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=94.08 E-value=0.57 Score=27.80 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=36.7
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeee-eeCCCCceEEEeec----CCC-CccceeecccCCCC-CCCCcceEEEEeC
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKK-LDFPAMKFSLYFMG----NWG-TEKDEDLTYHNGNS-DPRGFGHIGIQVP 73 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~-~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~-~~~g~~~i~f~v~ 73 (95)
.+|++++|.+.+.+.++-+..+..-..-. ..-.+.....+.+. ..+ .....++++...+. ...|+.||-|.++
T Consensus 35 ~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~K~Yp~eGWEHIE~Vip 114 (185)
T PF06185_consen 35 IDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKDKRYPQEGWEHIEFVIP 114 (185)
T ss_dssp EEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---SS--SS-EEEEEEEE--
T ss_pred CcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCCCCCCCCCceEEEEEec
Confidence 37999999999999999999987643222 21222222222222 111 11123345533322 2357789999987
Q ss_pred C
Q psy18055 74 D 74 (95)
Q Consensus 74 d 74 (95)
.
T Consensus 115 ~ 115 (185)
T PF06185_consen 115 S 115 (185)
T ss_dssp S
T ss_pred C
Confidence 3
No 107
>PF15067 FAM124: FAM124 family
Probab=93.69 E-value=0.4 Score=29.39 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=43.1
Q ss_pred eeEEEEC--CchhcHHHhhhccCCEEeeeeeCCCCceEEEee-cCCCCccceee-cccCCC-CCCCCcceEEEEeCCHHH
Q psy18055 3 QTMYRIK--DPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFM-GNWGTEKDEDL-TYHNGN-SDPRGFGHIGIQVPDVTK 77 (95)
Q Consensus 3 hv~l~v~--d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~-~~~~g~~~i~f~v~d~~~ 77 (95)
.++|+|+ |.+.+++||+-+++-++.... .++-++-+ ...+.+....+ ....+. +.+....-+.|.|.|+.+
T Consensus 131 Rftly~~~~N~~d~vr~Yelil~~~~~~~k----~~FC~F~lys~~~~~iQlsLK~lp~~~~p~p~esavLqF~V~~igq 206 (236)
T PF15067_consen 131 RFTLYCSFDNYEDMVRFYELILQREPTQQK----EDFCFFTLYSQPGLDIQLSLKQLPPGMSPEPTESAVLQFRVEDIGQ 206 (236)
T ss_pred EEEEEecCCCHHHHHHHHHHHhccCcceee----CCcEEEEEecCCCeEEEEEeccCCCCCCcccccceEEEEEecchhh
Confidence 4789999 999999999999998775543 11222111 11222211111 111222 223444589999999887
Q ss_pred HHHH
Q psy18055 78 ACER 81 (95)
Q Consensus 78 ~~~~ 81 (95)
+..-
T Consensus 207 LvpL 210 (236)
T PF15067_consen 207 LVPL 210 (236)
T ss_pred hccc
Confidence 7543
No 108
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.51 E-value=0.25 Score=23.35 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=23.6
Q ss_pred CcceEEEEeCCHHHHHHHHHHcCCeee
Q psy18055 64 GFGHIGIQVPDVTKACERFEQLGVEFV 90 (95)
Q Consensus 64 g~~~i~f~v~d~~~~~~~l~~~G~~~~ 90 (95)
+...+.|.+++.+.+.+.|+++|++++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v~ 65 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVELV 65 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceEC
Confidence 446899999999999999999999874
No 109
>PRK11700 hypothetical protein; Provisional
Probab=93.41 E-value=0.65 Score=27.56 Aligned_cols=73 Identities=15% Similarity=0.294 Sum_probs=40.4
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeee-CCCCceEEEeec------CCCCccceeecccCCCC-CCCCcceEEEEe
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLD-FPAMKFSLYFMG------NWGTEKDEDLTYHNGNS-DPRGFGHIGIQV 72 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~g~~~i~f~v 72 (95)
.+|++++|.+.+.+.+|.+..+..--.-... -.+..+.++.+. .+.. ...++++...+. ...|+.||-+.+
T Consensus 40 ~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I-~cvELP~P~~k~Yp~eGWEHIElVl 118 (187)
T PRK11700 40 ADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSI-DCVELPYPGEKRYPHEGWEHIELVL 118 (187)
T ss_pred CcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEE-EEEEeCCCCCCCCCCCCceEEEEEe
Confidence 4899999999999999998877542211111 122222222222 1111 123345433222 236788999998
Q ss_pred CC
Q psy18055 73 PD 74 (95)
Q Consensus 73 ~d 74 (95)
+-
T Consensus 119 p~ 120 (187)
T PRK11700 119 PG 120 (187)
T ss_pred cC
Confidence 73
No 110
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.34 E-value=0.49 Score=22.93 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=23.0
Q ss_pred CcceEEEEeC--CHHHHHHHHHHcCCeeecC
Q psy18055 64 GFGHIGIQVP--DVTKACERFEQLGVEFVKK 92 (95)
Q Consensus 64 g~~~i~f~v~--d~~~~~~~l~~~G~~~~~~ 92 (95)
+...+.|.++ +.+.+.+.|+++|+++.+|
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 3445666665 7889999999999999876
No 111
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=91.81 E-value=0.45 Score=26.19 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=24.4
Q ss_pred CcceEEEEeCCHHHHHHHHHHcCCeeecC
Q psy18055 64 GFGHIGIQVPDVTKACERFEQLGVEFVKK 92 (95)
Q Consensus 64 g~~~i~f~v~d~~~~~~~l~~~G~~~~~~ 92 (95)
+..|+++.|.|+++..+...+.|.++..+
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccc
Confidence 45699999999999999998899876543
No 112
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=91.58 E-value=1.6 Score=25.01 Aligned_cols=72 Identities=15% Similarity=0.330 Sum_probs=40.2
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeeee-CCCCceEEEeec------CCCCccceeecccCCCC-CCCCcceEEEEe
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLD-FPAMKFSLYFMG------NWGTEKDEDLTYHNGNS-DPRGFGHIGIQV 72 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~g~~~i~f~v 72 (95)
.+|++++|.+.+.+.+|.+..+..--.-... -.+....++.+. .+.. ...++++...+. ...|+.||-+.+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I-~cvELP~P~~k~Yp~eGWEHIE~Vl 80 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSI-SIVELPFPKDKKYPQEGWEHIEIVI 80 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEE-EEEEeCCCCCCCCCCCCceEEEEEe
Confidence 4899999999999999999888642211111 122222222222 1111 123344432222 236788999998
Q ss_pred C
Q psy18055 73 P 73 (95)
Q Consensus 73 ~ 73 (95)
+
T Consensus 81 p 81 (149)
T cd07268 81 P 81 (149)
T ss_pred c
Confidence 7
No 113
>KOG2944|consensus
Probab=90.89 E-value=0.24 Score=28.66 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=23.6
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeee
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKL 30 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~ 30 (95)
++|||+.|+|+.+++.-++ -.|.+...+.
T Consensus 116 fgHIci~V~di~sac~~lk-ekGV~f~Kk~ 144 (170)
T KOG2944|consen 116 FGHICIEVDDINSACERLK-EKGVRFKKKL 144 (170)
T ss_pred cceEEEEeCCHHHHHHHHH-HhCceeeecC
Confidence 5899999999999999885 6787755543
No 114
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=90.69 E-value=0.78 Score=26.24 Aligned_cols=28 Identities=43% Similarity=0.790 Sum_probs=23.9
Q ss_pred CCcceEEEEeCCHHHHHHHHHH-cCCeee
Q psy18055 63 RGFGHIGIQVPDVTKACERFEQ-LGVEFV 90 (95)
Q Consensus 63 ~g~~~i~f~v~d~~~~~~~l~~-~G~~~~ 90 (95)
.+..|+++.|.|+++..+..++ .|.++.
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~ 31 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLI 31 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEE
Confidence 3567999999999999999976 698764
No 115
>PRK11478 putative lyase; Provisional
Probab=89.01 E-value=1.7 Score=23.25 Aligned_cols=26 Identities=4% Similarity=0.120 Sum_probs=20.6
Q ss_pred ceeEEEECCchhcHHHhhhccCCEEee
Q psy18055 2 QQTMYRIKDPRKSLPFYTKVLGMSLLK 28 (95)
Q Consensus 2 ~hv~l~v~d~~~s~~FY~~~lg~~~~~ 28 (95)
.|+++.|.|++++.+-..+ .|.++..
T Consensus 77 ~hi~f~v~d~~~~~~~l~~-~G~~~~~ 102 (129)
T PRK11478 77 RHLAFSVDDIDAAVAHLES-HNVKCEA 102 (129)
T ss_pred eEEEEEeCCHHHHHHHHHH-cCCeeec
Confidence 5999999999998887754 6887653
No 116
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=88.92 E-value=0.91 Score=23.92 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=23.6
Q ss_pred CcceEEEEeCCHHHHHHHHHHcCCeeec
Q psy18055 64 GFGHIGIQVPDVTKACERFEQLGVEFVK 91 (95)
Q Consensus 64 g~~~i~f~v~d~~~~~~~l~~~G~~~~~ 91 (95)
+..|+++.|.|++++.+.....|.++..
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEe
Confidence 4579999999999999888878887653
No 117
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.08 E-value=1.4 Score=22.44 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.2
Q ss_pred ceEEEEeCC----HHHHHHHHHHcCCeeec
Q psy18055 66 GHIGIQVPD----VTKACERFEQLGVEFVK 91 (95)
Q Consensus 66 ~~i~f~v~d----~~~~~~~l~~~G~~~~~ 91 (95)
-.+.++|+| ++.+.+.|+++|+++..
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 367789888 99999999999998753
No 118
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=87.53 E-value=1.6 Score=22.98 Aligned_cols=28 Identities=29% Similarity=0.553 Sum_probs=23.5
Q ss_pred CcceEEEEeCCHHHHHHHHHH-cCCeeec
Q psy18055 64 GFGHIGIQVPDVTKACERFEQ-LGVEFVK 91 (95)
Q Consensus 64 g~~~i~f~v~d~~~~~~~l~~-~G~~~~~ 91 (95)
+.+|+++.|.|+++..+..++ .|+++..
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~ 31 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIR 31 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEee
Confidence 567999999999999999975 7887653
No 119
>PLN02367 lactoylglutathione lyase
Probab=87.30 E-value=2.1 Score=26.41 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.4
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeeee
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKL 30 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~~ 30 (95)
+.|++|.|.|++++.+-.+ ..|.++....
T Consensus 170 ~~HIaf~VdDVdaa~erL~-a~Gv~~v~~P 198 (233)
T PLN02367 170 FGHIGITVDDVYKACERFE-ELGVEFVKKP 198 (233)
T ss_pred ceEEEEEcCCHHHHHHHHH-HCCCEEEeCC
Confidence 4799999999999999984 6898887543
No 120
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=87.04 E-value=2.1 Score=23.48 Aligned_cols=42 Identities=7% Similarity=0.059 Sum_probs=28.6
Q ss_pred ceeEEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeecC
Q psy18055 2 QQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGN 44 (95)
Q Consensus 2 ~hv~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~ 44 (95)
.|+++.|.|++++.+-.+ ..|.++...........+.+++..
T Consensus 71 ~hia~~V~Dvda~~~~l~-~~G~~v~~~p~~~~~~~~~~~i~d 112 (136)
T cd08342 71 CDVAFRVDDAAAAYERAV-ARGAKPVQEPVEEPGELKIAAIKG 112 (136)
T ss_pred EEEEEEeCCHHHHHHHHH-HcCCeEccCceecCCeEEEEEEec
Confidence 599999999999877774 467777655443234445666654
No 121
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=86.81 E-value=2 Score=22.89 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=23.9
Q ss_pred CcceEEEEeCCHHHHHHHHHH-cCCeeecC
Q psy18055 64 GFGHIGIQVPDVTKACERFEQ-LGVEFVKK 92 (95)
Q Consensus 64 g~~~i~f~v~d~~~~~~~l~~-~G~~~~~~ 92 (95)
+.+|+++.|.|+++..+...+ .|.++...
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccC
Confidence 467999999999999999876 58876544
No 122
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=86.61 E-value=0.96 Score=25.01 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=25.0
Q ss_pred CcceEEEEeCCHHHHHHHHHHcCCeeecC
Q psy18055 64 GFGHIGIQVPDVTKACERFEQLGVEFVKK 92 (95)
Q Consensus 64 g~~~i~f~v~d~~~~~~~l~~~G~~~~~~ 92 (95)
....+-++|+|+++..+.|+++|+++..+
T Consensus 108 ~KAlli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 108 QKALLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred ceEEEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 33578899999999999999999998754
No 123
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=86.50 E-value=1.7 Score=23.26 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=23.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHc----CCeeecC
Q psy18055 64 GFGHIGIQVPDVTKACERFEQL----GVEFVKK 92 (95)
Q Consensus 64 g~~~i~f~v~d~~~~~~~l~~~----G~~~~~~ 92 (95)
+..|+.+.|.|++++.+...+. |.+....
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~ 33 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKE 33 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEe
Confidence 3579999999999999888775 8776543
No 124
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=86.40 E-value=2.2 Score=22.43 Aligned_cols=30 Identities=23% Similarity=0.466 Sum_probs=24.7
Q ss_pred CcceEEEEeCCHHHHHHHHHH-cCCeeecCC
Q psy18055 64 GFGHIGIQVPDVTKACERFEQ-LGVEFVKKP 93 (95)
Q Consensus 64 g~~~i~f~v~d~~~~~~~l~~-~G~~~~~~p 93 (95)
+.+|+.+.|+|+++..+..++ .|.++...+
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeeccc
Confidence 567999999999999999987 688776543
No 125
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=85.93 E-value=1.8 Score=24.72 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=22.9
Q ss_pred CcceEEEEeCCHHHHHHHHHHc-CCeeec
Q psy18055 64 GFGHIGIQVPDVTKACERFEQL-GVEFVK 91 (95)
Q Consensus 64 g~~~i~f~v~d~~~~~~~l~~~-G~~~~~ 91 (95)
|.+|+++.|+|+++..+...+. |.++..
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~ 29 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVG 29 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEe
Confidence 4579999999999999999664 877654
No 126
>KOG4657|consensus
Probab=85.86 E-value=0.57 Score=28.62 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=18.4
Q ss_pred CCchhcHHHhhhccCCEEeeee
Q psy18055 9 KDPRKSLPFYTKVLGMSLLKKL 30 (95)
Q Consensus 9 ~d~~~s~~FY~~~lg~~~~~~~ 30 (95)
-|+.+++.||.+.||+++...+
T Consensus 145 a~~~e~a~wy~dyLGleie~~h 166 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGH 166 (246)
T ss_pred hccHHHHHHHHHhcCceeeecc
Confidence 3677889999999999987654
No 127
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=85.84 E-value=1.8 Score=22.87 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=23.5
Q ss_pred CcceEEEEeCCHHHHHHHHHHcCCeeec
Q psy18055 64 GFGHIGIQVPDVTKACERFEQLGVEFVK 91 (95)
Q Consensus 64 g~~~i~f~v~d~~~~~~~l~~~G~~~~~ 91 (95)
+.+|+.+.|+|+++..+...+.|.++..
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~lGl~~~~ 30 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTDFGLEVAA 30 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHHcCCEEEE
Confidence 4579999999999999988888987643
No 128
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.23 E-value=2.2 Score=20.62 Aligned_cols=24 Identities=50% Similarity=0.847 Sum_probs=19.9
Q ss_pred eEEEEeCC---HHHHHHHHHHcCCeee
Q psy18055 67 HIGIQVPD---VTKACERFEQLGVEFV 90 (95)
Q Consensus 67 ~i~f~v~d---~~~~~~~l~~~G~~~~ 90 (95)
++.+++.+ ++++.+.|+++|+++.
T Consensus 41 ~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 41 LVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 67788765 8889999999999764
No 129
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=84.75 E-value=3.5 Score=23.29 Aligned_cols=28 Identities=29% Similarity=0.634 Sum_probs=23.6
Q ss_pred CCcceEEEEeCCHHHHHHHHHH-cCCeee
Q psy18055 63 RGFGHIGIQVPDVTKACERFEQ-LGVEFV 90 (95)
Q Consensus 63 ~g~~~i~f~v~d~~~~~~~l~~-~G~~~~ 90 (95)
.+.+|+++.|+|+++..+...+ .|.++.
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~ 36 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLS 36 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEE
Confidence 4678999999999999999876 688764
No 130
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=83.02 E-value=0.44 Score=21.50 Aligned_cols=20 Identities=5% Similarity=0.232 Sum_probs=16.3
Q ss_pred eEEEECCchhcHHHhhhccC
Q psy18055 4 TMYRIKDPRKSLPFYTKVLG 23 (95)
Q Consensus 4 v~l~v~d~~~s~~FY~~~lg 23 (95)
.++.+++.+++++||.+-|.
T Consensus 15 ~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 15 SGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred CCCccccccchhHHHHHHHH
Confidence 45677889999999998764
No 131
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=82.41 E-value=3.5 Score=23.47 Aligned_cols=28 Identities=25% Similarity=0.558 Sum_probs=23.1
Q ss_pred CCcceEEEEeCCHHHHHHHHHH-cCCeee
Q psy18055 63 RGFGHIGIQVPDVTKACERFEQ-LGVEFV 90 (95)
Q Consensus 63 ~g~~~i~f~v~d~~~~~~~l~~-~G~~~~ 90 (95)
.+..|+++.|.|+++..+...+ .|.++.
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~ 30 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVS 30 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEE
Confidence 3567999999999999988877 687654
No 132
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=82.20 E-value=4.7 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=22.7
Q ss_pred CceeEEEECCchhcHHHhhhccCCEEeee
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKK 29 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg~~~~~~ 29 (95)
+.|++|.|.|++++.+... ..|.++...
T Consensus 122 ~~Hlaf~V~Dvd~~~~~L~-~~Gv~v~~~ 149 (185)
T PLN03042 122 FGHIGITVDDVYKACERFE-KLGVEFVKK 149 (185)
T ss_pred ccEEEEEcCCHHHHHHHHH-HCCCeEEeC
Confidence 4799999999999988884 678877643
No 133
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=77.59 E-value=3.7 Score=22.71 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.6
Q ss_pred ceEEEEeCCHHHHHHHHHHcCCeee
Q psy18055 66 GHIGIQVPDVTKACERFEQLGVEFV 90 (95)
Q Consensus 66 ~~i~f~v~d~~~~~~~l~~~G~~~~ 90 (95)
.|+-..-+|++++.+.|+++|.++.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 3777777899999999999998874
No 134
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=76.72 E-value=6.7 Score=18.66 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.1
Q ss_pred ceEEEEeCCHHHHHHHHHHcCCeee
Q psy18055 66 GHIGIQVPDVTKACERFEQLGVEFV 90 (95)
Q Consensus 66 ~~i~f~v~d~~~~~~~l~~~G~~~~ 90 (95)
..+-+.++|.+.+.+.|+++|+++.
T Consensus 41 ~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 41 GILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CEEEEEECCHHHHHHHHHHCCCEEE
Confidence 4677777888899999999999874
No 135
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=76.09 E-value=4.4 Score=26.03 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=20.3
Q ss_pred CcceEEEEe------CCHHHHHHHHHHcCCeee
Q psy18055 64 GFGHIGIQV------PDVTKACERFEQLGVEFV 90 (95)
Q Consensus 64 g~~~i~f~v------~d~~~~~~~l~~~G~~~~ 90 (95)
..+|+...| .|++++.+.|+++|+++-
T Consensus 184 ~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 184 HINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp S-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred ccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 346999999 999999999999998765
No 136
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.15 E-value=4.6 Score=19.27 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=17.9
Q ss_pred ceEEEEe---CCHHHHHHHHHHcCCee
Q psy18055 66 GHIGIQV---PDVTKACERFEQLGVEF 89 (95)
Q Consensus 66 ~~i~f~v---~d~~~~~~~l~~~G~~~ 89 (95)
+.+.+.+ ++.+.+.+.|+++|+++
T Consensus 43 ~~~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 43 GILRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEEEECCHHHHHHHHHHHHHcCCcC
Confidence 3445555 46889999999999864
No 137
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.71 E-value=17 Score=20.94 Aligned_cols=76 Identities=9% Similarity=0.100 Sum_probs=40.2
Q ss_pred CCchhcHHHhhhccC-CEEee--eee-----CCCCceEEEeecCCCCccceeecccCCCCC--CCCcc-eEEEEeCC---
Q psy18055 9 KDPRKSLPFYTKVLG-MSLLK--KLD-----FPAMKFSLYFMGNWGTEKDEDLTYHNGNSD--PRGFG-HIGIQVPD--- 74 (95)
Q Consensus 9 ~d~~~s~~FY~~~lg-~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~-~i~f~v~d--- 74 (95)
.+.+++..||.++|- -++.. +.+ .+.+.+........+..+. ....|... +-... .+.+.|+|
T Consensus 14 ~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~---~ld~g~~~~f~fneA~S~~v~~~~q~E 90 (151)
T COG3865 14 GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFM---ALDGGPNTSFKFNEAFSFQVACDDQEE 90 (151)
T ss_pred CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEE---EEcCCCCcCCCcCccEEEEEEcCCHHH
Confidence 578999999999994 34432 221 1123333333333333221 22222221 11111 56666665
Q ss_pred HHHHHHHHHHcCC
Q psy18055 75 VTKACERFEQLGV 87 (95)
Q Consensus 75 ~~~~~~~l~~~G~ 87 (95)
+|++...|.+.|.
T Consensus 91 ~Drlwnal~~~g~ 103 (151)
T COG3865 91 IDRLWNALSDNGG 103 (151)
T ss_pred HHHHHHHHhccCc
Confidence 8888899988885
No 138
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=66.58 E-value=12 Score=19.46 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=20.7
Q ss_pred CcceEEEEeCC---HHHHHHHHHHcCCeeec
Q psy18055 64 GFGHIGIQVPD---VTKACERFEQLGVEFVK 91 (95)
Q Consensus 64 g~~~i~f~v~d---~~~~~~~l~~~G~~~~~ 91 (95)
+.-.++|.+++ ++.+.++|++.|+++..
T Consensus 50 a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~d 80 (91)
T PF00585_consen 50 ARVLVGIEVPDAEDLEELIERLKALGYPYED 80 (91)
T ss_dssp SEEEEEEE-SSTHHHHHHHHHHTSSS-EEEC
T ss_pred eeEEEEEEeCCHHHHHHHHHHHHHcCCCeEE
Confidence 44488888875 67899999999998764
No 139
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=60.80 E-value=23 Score=18.65 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=21.6
Q ss_pred cccCCCCCCCCcceEEEEeCCHHHHHHHHHH
Q psy18055 54 TYHNGNSDPRGFGHIGIQVPDVTKACERFEQ 84 (95)
Q Consensus 54 ~~~~~~~~~~g~~~i~f~v~d~~~~~~~l~~ 84 (95)
.+..|..-+.|.|.+.|.+++-+.+++.+.+
T Consensus 63 ~fEaGRrc~tG~G~f~f~t~~a~~I~~~v~~ 93 (100)
T PF02174_consen 63 SFEAGRRCPTGEGLFWFQTPDAEEIFETVER 93 (100)
T ss_dssp EEEESTTSTTCSEEEEEEESTHHHHHHHHHH
T ss_pred EEEECCcCCCCCcEEEEEeCCHHHHHHHHHH
Confidence 4445544456788999999997777766543
No 140
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.39 E-value=19 Score=16.77 Aligned_cols=24 Identities=4% Similarity=0.234 Sum_probs=17.8
Q ss_pred eEEEEeCC---HHHHHHHHHHcCCeee
Q psy18055 67 HIGIQVPD---VTKACERFEQLGVEFV 90 (95)
Q Consensus 67 ~i~f~v~d---~~~~~~~l~~~G~~~~ 90 (95)
++.+.+.+ ++.+.+.|++.|+++.
T Consensus 46 ~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 46 ELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 44555554 5689999999999874
No 141
>PF14044 NETI: NETI protein
Probab=57.41 E-value=20 Score=17.08 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=16.7
Q ss_pred EEeCC---HHHHHHHHHHcCCeeec
Q psy18055 70 IQVPD---VTKACERFEQLGVEFVK 91 (95)
Q Consensus 70 f~v~d---~~~~~~~l~~~G~~~~~ 91 (95)
|.|.+ +.+-.+++++.|+..+.
T Consensus 2 FeV~enETI~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKEGYMPVR 26 (57)
T ss_pred eeccCCCcHHHHHHHHHHcCCCcee
Confidence 55553 88899999999986543
No 142
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=57.16 E-value=5.3 Score=16.56 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=13.0
Q ss_pred ECCchhcHHHhhhccCC
Q psy18055 8 IKDPRKSLPFYTKVLGM 24 (95)
Q Consensus 8 v~d~~~s~~FY~~~lg~ 24 (95)
..|.++++.+|+..|.+
T Consensus 12 ~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 12 QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp CT-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 46789999999997754
No 143
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=55.41 E-value=4.6 Score=20.50 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=13.6
Q ss_pred EEeCCHHHHHHHHHHcCCeeecC
Q psy18055 70 IQVPDVTKACERFEQLGVEFVKK 92 (95)
Q Consensus 70 f~v~d~~~~~~~l~~~G~~~~~~ 92 (95)
+..+.++.++..|.++|+.|+..
T Consensus 36 ~~~e~id~i~~~L~~~gI~Vvd~ 58 (82)
T PF03979_consen 36 LDPEQIDEIYDTLEDEGIEVVDE 58 (82)
T ss_dssp --HHHHHHHHHHHHTT----B--
T ss_pred CCHHHHHHHHHHHHHCCCEEecC
Confidence 55567999999999999999873
No 144
>TIGR03515 GldC gliding motility-associated protein GldC. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldC do not abolish the gliding phenotype but do impair it. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=55.34 E-value=7.1 Score=21.07 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=16.9
Q ss_pred eeEEEECC--chhcHHHhhhccC
Q psy18055 3 QTMYRIKD--PRKSLPFYTKVLG 23 (95)
Q Consensus 3 hv~l~v~d--~~~s~~FY~~~lg 23 (95)
.|.|+++| +++++.||-+.|.
T Consensus 52 rIDLWTKdMpVdEMK~Ff~qtl~ 74 (108)
T TIGR03515 52 RIDLWTKDMPVDEMKRFFIETLG 74 (108)
T ss_pred EEEeecCcCcHHHHHHHHHHHHH
Confidence 46788887 7899999988874
No 145
>PF13225 DUF4033: Domain of unknown function (DUF4033)
Probab=54.39 E-value=21 Score=18.60 Aligned_cols=27 Identities=15% Similarity=0.434 Sum_probs=20.5
Q ss_pred cHHHhhhccCCEEeeeeeCCCCceEEE
Q psy18055 14 SLPFYTKVLGMSLLKKLDFPAMKFSLY 40 (95)
Q Consensus 14 s~~FY~~~lg~~~~~~~~~~~~~~~~~ 40 (95)
+-+|+++-||+++.-.+.+++..-.+.
T Consensus 49 tQ~Ff~~~~Glpl~M~PNfed~SC~~~ 75 (86)
T PF13225_consen 49 TQTFFKEEFGLPLTMEPNFEDFSCQMI 75 (86)
T ss_pred hHHHHHhccCCceEecCCCcCcEEEEE
Confidence 348999999999998887777544333
No 146
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=54.19 E-value=26 Score=17.97 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=16.7
Q ss_pred EeC-CHHHHHHHHHHcCCeeec
Q psy18055 71 QVP-DVTKACERFEQLGVEFVK 91 (95)
Q Consensus 71 ~v~-d~~~~~~~l~~~G~~~~~ 91 (95)
.|+ .+..+.+.|++.|+++..
T Consensus 5 AVE~~Ls~v~~~L~~~GyeVv~ 26 (80)
T PF03698_consen 5 AVEEGLSNVKEALREKGYEVVD 26 (80)
T ss_pred EecCCchHHHHHHHHCCCEEEe
Confidence 344 488899999999998864
No 147
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=50.89 E-value=25 Score=17.24 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=18.5
Q ss_pred eEEEEeCCHHHHHHHHHHcCCeee
Q psy18055 67 HIGIQVPDVTKACERFEQLGVEFV 90 (95)
Q Consensus 67 ~i~f~v~d~~~~~~~l~~~G~~~~ 90 (95)
-+.|..+|.+.+.+.|+++|+++.
T Consensus 44 al~~~~~d~~~i~~~l~~~~i~~~ 67 (73)
T PF11823_consen 44 ALRFEPEDLEKIKEILEENGIEYE 67 (73)
T ss_pred EEEEChhhHHHHHHHHHHCCCCee
Confidence 344444689999999999998765
No 148
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=50.38 E-value=32 Score=19.36 Aligned_cols=27 Identities=19% Similarity=0.474 Sum_probs=20.2
Q ss_pred eeEEEEC-CchhcHHHhhhccCCEEeeee
Q psy18055 3 QTMYRIK-DPRKSLPFYTKVLGMSLLKKL 30 (95)
Q Consensus 3 hv~l~v~-d~~~s~~FY~~~lg~~~~~~~ 30 (95)
.+.|.|. +-+.++.||+. +||......
T Consensus 128 ~~~L~V~~~N~~Ai~lY~~-~GF~~~~~~ 155 (177)
T COG0456 128 KIVLEVRESNEAAIGLYRK-LGFEVVKIR 155 (177)
T ss_pred eEEEEEecCChHHHHHHHH-cCCEEEeee
Confidence 4566666 56699999976 999987654
No 149
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=47.66 E-value=37 Score=18.17 Aligned_cols=26 Identities=12% Similarity=0.186 Sum_probs=22.1
Q ss_pred cceEEEEeCCHHHHHHHHHHcCCeee
Q psy18055 65 FGHIGIQVPDVTKACERFEQLGVEFV 90 (95)
Q Consensus 65 ~~~i~f~v~d~~~~~~~l~~~G~~~~ 90 (95)
...++|....++....+|.++|+++.
T Consensus 56 ~~~~gfp~~~l~~~l~~Ll~~G~~V~ 81 (113)
T PF01624_consen 56 VPMAGFPKSQLDKYLKKLLEAGYRVA 81 (113)
T ss_dssp EEEEEEEGGGHHHHHHHHHHTT-EEE
T ss_pred ccEecccHHHHHHHHHHHHHcCCEEE
Confidence 45899999999999999999998874
No 150
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.61 E-value=20 Score=18.39 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=19.9
Q ss_pred eEEEE--eCCHHHHHHHHHHcCCeeec
Q psy18055 67 HIGIQ--VPDVTKACERFEQLGVEFVK 91 (95)
Q Consensus 67 ~i~f~--v~d~~~~~~~l~~~G~~~~~ 91 (95)
|+.|- +++++.+.+.++++|++|-.
T Consensus 52 ~V~Fl~~~~s~eev~~ele~mga~in~ 78 (88)
T COG4009 52 YVVFLEEVESEEEVERELEDMGAEINR 78 (88)
T ss_pred EEEEEeccCCHHHHHHHHHHhCchhcc
Confidence 66665 45799999999999998753
No 151
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=47.48 E-value=46 Score=18.02 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=21.2
Q ss_pred ecccCCCCCCCCcceEEEEeCCHHHHHHHHHH
Q psy18055 53 LTYHNGNSDPRGFGHIGIQVPDVTKACERFEQ 84 (95)
Q Consensus 53 ~~~~~~~~~~~g~~~i~f~v~d~~~~~~~l~~ 84 (95)
+.+..|..-+.|.+.+.|.+..-+++++.+.+
T Consensus 61 FsFEAGRrC~tGeG~f~F~t~~~~~if~~v~~ 92 (104)
T cd01203 61 FSFEAGRRCTSGEGVFTFDTTQGNEIFRAVEA 92 (104)
T ss_pred EEEEecCcCCCCCcEEEEecCCHHHHHHHHHH
Confidence 34445544346778999999987776665543
No 152
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=47.34 E-value=30 Score=17.63 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=22.0
Q ss_pred eEEEEeCCHHHHHHHHHHcCCeeecCCC
Q psy18055 67 HIGIQVPDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 67 ~i~f~v~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
.+.++-.++.+-.+.|++.|++|...+.
T Consensus 28 ~LgiSRtaVwK~Iq~Lr~~G~~I~s~~~ 55 (79)
T COG1654 28 ELGISRTAVWKHIQQLREEGVDIESVRG 55 (79)
T ss_pred HHCccHHHHHHHHHHHHHhCCceEecCC
Confidence 4555556788999999999999987654
No 153
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=44.21 E-value=9.4 Score=18.17 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=11.6
Q ss_pred chhcHHHhhhccCCE
Q psy18055 11 PRKSLPFYTKVLGMS 25 (95)
Q Consensus 11 ~~~s~~FY~~~lg~~ 25 (95)
++..++||++.|-|.
T Consensus 43 Pq~vI~FYE~~l~f~ 57 (58)
T PF01393_consen 43 PQKVIKFYESHLVFK 57 (58)
T ss_dssp HHHHHHHHHHTCEEE
T ss_pred cHHHHHHHHHHeeec
Confidence 567899999887653
No 154
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.51 E-value=48 Score=16.77 Aligned_cols=26 Identities=38% Similarity=0.673 Sum_probs=20.5
Q ss_pred ceEEEEeC--CHHHHHHHHHHcCCeeec
Q psy18055 66 GHIGIQVP--DVTKACERFEQLGVEFVK 91 (95)
Q Consensus 66 ~~i~f~v~--d~~~~~~~l~~~G~~~~~ 91 (95)
-.+++++. +++.+.++|++.|+++..
T Consensus 43 vlvGi~~~~~~~~~l~~~l~~~g~~~~d 70 (81)
T cd04907 43 VLVGIQVPDADLDELKERLDALGYPYQE 70 (81)
T ss_pred EEEEEEeChHHHHHHHHHHHHcCCCeEE
Confidence 46777775 578899999999998753
No 155
>smart00300 ChSh Chromo Shadow Domain.
Probab=42.24 E-value=14 Score=17.70 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=13.3
Q ss_pred ECCchhcHHHhhhccCC
Q psy18055 8 IKDPRKSLPFYTKVLGM 24 (95)
Q Consensus 8 v~d~~~s~~FY~~~lg~ 24 (95)
.+.++..++||++.+-|
T Consensus 43 ~k~P~~vI~FYE~~l~~ 59 (61)
T smart00300 43 VKCPQKVIRFYESHLTF 59 (61)
T ss_pred HHChHHHHHHHHHhCcc
Confidence 34678889999988765
No 156
>PRK03094 hypothetical protein; Provisional
Probab=41.40 E-value=39 Score=17.36 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHcCCeee
Q psy18055 74 DVTKACERFEQLGVEFV 90 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~~ 90 (95)
++..+.+.|++.|++++
T Consensus 9 ~Ls~i~~~L~~~GYeVv 25 (80)
T PRK03094 9 SLTDVQQALKQKGYEVV 25 (80)
T ss_pred CcHHHHHHHHHCCCEEE
Confidence 58889999999999985
No 157
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=41.33 E-value=17 Score=16.94 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=13.0
Q ss_pred ECCchhcHHHhhhccCC
Q psy18055 8 IKDPRKSLPFYTKVLGM 24 (95)
Q Consensus 8 v~d~~~s~~FY~~~lg~ 24 (95)
.+.++..++||++.+-|
T Consensus 37 ~k~P~~vI~FYE~~l~~ 53 (54)
T cd00034 37 VKCPLLVISFYEEHLTY 53 (54)
T ss_pred hhCcHHHHHHHHHhccc
Confidence 45678889999987754
No 158
>PF05166 YcgL: YcgL domain; InterPro: IPR007840 This family of proteins formerly called DUF709 includes the Escherichia coli gene ycgL. Homologues of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure []. The proteins in this entry are functionally uncharacterised.; PDB: 2H7A_A.
Probab=40.67 E-value=35 Score=17.22 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHcCCeeecCC
Q psy18055 73 PDVTKACERFEQLGVEFVKKP 93 (95)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~p 93 (95)
.|.+++.+.|.+.|+=+..||
T Consensus 53 ~d~~~V~~~l~~~GfyLQ~PP 73 (74)
T PF05166_consen 53 ADAEKVLAALEEQGFYLQMPP 73 (74)
T ss_dssp S-HHHHHHHHHHTSEEEE---
T ss_pred CCHHHHHHHHHhCCEEEecCC
Confidence 479999999999999888777
No 159
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=39.71 E-value=39 Score=15.08 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=15.3
Q ss_pred eCCHHHHHHHHHHcCCeee
Q psy18055 72 VPDVTKACERFEQLGVEFV 90 (95)
Q Consensus 72 v~d~~~~~~~l~~~G~~~~ 90 (95)
|.+.+.+.+-.++.|+.+.
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFT 44 (49)
T ss_pred cCCHHHHHHHHHHcCCCCC
Confidence 5678888888899998875
No 160
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=38.92 E-value=19 Score=19.14 Aligned_cols=20 Identities=15% Similarity=0.312 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHcCCeeecC
Q psy18055 73 PDVTKACERFEQLGVEFVKK 92 (95)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~ 92 (95)
+|++++.++|.+.|+++..+
T Consensus 76 ~di~RV~~~Laa~GWPl~~~ 95 (96)
T PF11829_consen 76 EDIERVRARLAAAGWPLADP 95 (96)
T ss_dssp HHHHHHHHHHHTTT-GCSS-
T ss_pred HHHHHHHHHHHhCCCCCCCC
Confidence 36999999999999987643
No 161
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=37.92 E-value=18 Score=16.70 Aligned_cols=14 Identities=7% Similarity=0.316 Sum_probs=11.7
Q ss_pred CchhcHHHhhhccC
Q psy18055 10 DPRKSLPFYTKVLG 23 (95)
Q Consensus 10 d~~~s~~FY~~~lg 23 (95)
++++..+||.+-|.
T Consensus 24 ~v~~~~dWYk~Mfk 37 (50)
T smart00459 24 SVERPKDWYRTMFK 37 (50)
T ss_pred CcccHHHHHHHHHH
Confidence 67889999998774
No 162
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.57 E-value=29 Score=20.60 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=18.4
Q ss_pred CceeEEEECCchhcHHHhhhccC
Q psy18055 1 MQQTMYRIKDPRKSLPFYTKVLG 23 (95)
Q Consensus 1 l~hv~l~v~d~~~s~~FY~~~lg 23 (95)
.+|++|+|.+-+.+..|-...+.
T Consensus 40 ~DHIaLRvh~~qtAk~wr~~~lq 62 (185)
T COG3102 40 ADHIALRVHQEQTAKRWRRGLLQ 62 (185)
T ss_pred cceeEEEeCcHHHHHHHHHHHHH
Confidence 48999999998888887665553
No 163
>KOG2465|consensus
Probab=37.25 E-value=34 Score=22.36 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=17.1
Q ss_pred cceEEEEeCCHHHHHHHHHHc
Q psy18055 65 FGHIGIQVPDVTKACERFEQL 85 (95)
Q Consensus 65 ~~~i~f~v~d~~~~~~~l~~~ 85 (95)
..+|||.|+|++.+++.+.-.
T Consensus 169 YP~icFavD~FdevF~dvvvr 189 (390)
T KOG2465|consen 169 YPEICFAVDDFDEVFDDVVVR 189 (390)
T ss_pred cceEEEEecCHHHhhhhhEEe
Confidence 349999999999999876543
No 164
>PHA03397 vlf-1 very late expression factor 1; Provisional
Probab=37.06 E-value=16 Score=24.24 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=14.7
Q ss_pred CchhcHHHhhhccCCEE
Q psy18055 10 DPRKSLPFYTKVLGMSL 26 (95)
Q Consensus 10 d~~~s~~FY~~~lg~~~ 26 (95)
.++.++.||++.+|++.
T Consensus 124 ~l~~~~~~y~~~~~l~~ 140 (363)
T PHA03397 124 TLQLTINFYTNAMGLPE 140 (363)
T ss_pred HHHHHHHHHHccCCCCc
Confidence 47889999999999983
No 165
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=36.32 E-value=78 Score=18.25 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=17.7
Q ss_pred eEEEEeCC---HHHHHHHHHHcCCeeec
Q psy18055 67 HIGIQVPD---VTKACERFEQLGVEFVK 91 (95)
Q Consensus 67 ~i~f~v~d---~~~~~~~l~~~G~~~~~ 91 (95)
-+.+..++ ++.|.+.|+++|+++-.
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~~Gf~Vk~ 55 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKANGFEVKV 55 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHhCCcEEEE
Confidence 44455454 88888999988887753
No 166
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=35.54 E-value=76 Score=17.09 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=19.0
Q ss_pred ecccCCCCCCCCcceEEEEeCCHHHHHHHH
Q psy18055 53 LTYHNGNSDPRGFGHIGIQVPDVTKACERF 82 (95)
Q Consensus 53 ~~~~~~~~~~~g~~~i~f~v~d~~~~~~~l 82 (95)
+.+..|..-+.|.+.+.|.|+.-+.+++.+
T Consensus 61 FsfEaGRrc~tG~G~f~f~t~~~~~I~~~v 90 (104)
T cd00824 61 FSFEAGRRCVTGEGIFTFQTDRAEEIFQNV 90 (104)
T ss_pred EEEEccCcCCCCCCEEEEEcCCHHHHHHHH
Confidence 344555444567789999999644444443
No 167
>PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator; InterPro: IPR006848 This family represents a number of putative transcription repressor proteins found in several Lactococcus bacteriophages. Horizontal transfer may account for the presence of similar proteins in Lactococcus species [].
Probab=34.97 E-value=20 Score=16.60 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=8.7
Q ss_pred hhcHHHhhhccC
Q psy18055 12 RKSLPFYTKVLG 23 (95)
Q Consensus 12 ~~s~~FY~~~lg 23 (95)
+.|+.||.+.|-
T Consensus 16 q~sve~yk~kl~ 27 (57)
T PF04761_consen 16 QESVEFYKEKLS 27 (57)
T ss_pred HHHHHHHHHHHH
Confidence 567888887664
No 168
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=34.65 E-value=48 Score=17.47 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHcCCeeecCCC
Q psy18055 74 DVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~p~ 94 (95)
|-+.+...|.+.|+++...|.
T Consensus 15 Dse~i~~~l~~~G~~~~~~~e 35 (98)
T PF00919_consen 15 DSERIASILQAAGYEIVDDPE 35 (98)
T ss_pred HHHHHHHHHHhcCCeeecccc
Confidence 677888999999999887764
No 169
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=34.52 E-value=68 Score=16.21 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=14.5
Q ss_pred ECCchhcHHHhhhccCCEEeee
Q psy18055 8 IKDPRKSLPFYTKVLGMSLLKK 29 (95)
Q Consensus 8 v~d~~~s~~FY~~~lg~~~~~~ 29 (95)
..+-..|.++|+ .|||+....
T Consensus 62 ~~~N~~s~~ly~-klGf~~~~~ 82 (86)
T PF08445_consen 62 DADNEASIRLYE-KLGFREIEE 82 (86)
T ss_dssp ETT-HHHHHHHH-HCT-EEEEE
T ss_pred ECCCHHHHHHHH-HcCCEEEEE
Confidence 356778999995 899987754
No 170
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=34.51 E-value=47 Score=18.47 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=20.8
Q ss_pred ceEEEEeCCHHHHHHHHHHcCCeee
Q psy18055 66 GHIGIQVPDVTKACERFEQLGVEFV 90 (95)
Q Consensus 66 ~~i~f~v~d~~~~~~~l~~~G~~~~ 90 (95)
+-+.+.-++++.+.+.|+++|+++.
T Consensus 61 Gd~vll~~EV~pvi~aL~~~GI~vt 85 (123)
T PF07485_consen 61 GDFVLLEDEVNPVISALRKNGIEVT 85 (123)
T ss_pred ecEEecHHHHHHHHHHHHHCCceEE
Confidence 4666666789999999999999875
No 171
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.09 E-value=60 Score=15.49 Aligned_cols=23 Identities=4% Similarity=0.296 Sum_probs=15.1
Q ss_pred EEEEeCC----HHHHHHHHHHcCCeee
Q psy18055 68 IGIQVPD----VTKACERFEQLGVEFV 90 (95)
Q Consensus 68 i~f~v~d----~~~~~~~l~~~G~~~~ 90 (95)
+.+.++| +.++.+.+.++|+.|.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~ 28 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARII 28 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEE
Confidence 3445554 6777777778887765
No 172
>PRK07334 threonine dehydratase; Provisional
Probab=33.98 E-value=91 Score=20.85 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=19.5
Q ss_pred eEEEEeCC---HHHHHHHHHHcCCeee
Q psy18055 67 HIGIQVPD---VTKACERFEQLGVEFV 90 (95)
Q Consensus 67 ~i~f~v~d---~~~~~~~l~~~G~~~~ 90 (95)
++.+.|.| +..+.++|++.|+++.
T Consensus 374 ~l~i~V~d~~~L~~vi~~Lr~~g~~~~ 400 (403)
T PRK07334 374 ELVIETRDAAHLQEVIAALRAAGFEAR 400 (403)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCeeE
Confidence 66677777 5688999999999875
No 173
>PRK08198 threonine dehydratase; Provisional
Probab=33.97 E-value=92 Score=20.76 Aligned_cols=24 Identities=8% Similarity=0.271 Sum_probs=19.4
Q ss_pred eEEEEeCC---HHHHHHHHHHcCCeee
Q psy18055 67 HIGIQVPD---VTKACERFEQLGVEFV 90 (95)
Q Consensus 67 ~i~f~v~d---~~~~~~~l~~~G~~~~ 90 (95)
.+.+++.+ ++.+.++|++.|+++.
T Consensus 375 ~v~ie~~~~~~~~~l~~~L~~~G~~v~ 401 (404)
T PRK08198 375 ELTLETRGPEHIEEILDALRDAGYEVK 401 (404)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCeEE
Confidence 56666666 8889999999999875
No 174
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=33.52 E-value=1.2e+02 Score=19.73 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=28.0
Q ss_pred EEEECCchhcHHHhhhccCCEEeeeeeCCCCceEEEeec
Q psy18055 5 MYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMG 43 (95)
Q Consensus 5 ~l~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~ 43 (95)
++.+.|.++.+.|....+|++++-++..-..+..++.+.
T Consensus 137 T~i~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~~v~ 175 (318)
T COG0189 137 TLITRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVFLVE 175 (318)
T ss_pred EEEEcCHHHHHHHHHHhcCCCEEEeeCCCCCccceEEec
Confidence 466778899999999999999887765434433444444
No 175
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=33.51 E-value=56 Score=18.51 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCeeecCCC
Q psy18055 75 VTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 75 ~~~~~~~l~~~G~~~~~~p~ 94 (95)
.|.+.+.|.+.|+.+...|.
T Consensus 131 AD~IRd~L~~~Gi~i~Dt~~ 150 (156)
T cd07963 131 ADRIRDELAAQGIILEDSPE 150 (156)
T ss_pred HHHHHHHHHHCCcEEEECCC
Confidence 67788999999999987764
No 176
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=33.41 E-value=70 Score=16.06 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=16.4
Q ss_pred eEEEEeCCHHHHHHHHHHcCCe
Q psy18055 67 HIGIQVPDVTKACERFEQLGVE 88 (95)
Q Consensus 67 ~i~f~v~d~~~~~~~l~~~G~~ 88 (95)
+....-+++..+.++|++.|.+
T Consensus 44 ~~vV~~~~~~~~~~~Lk~~GA~ 65 (75)
T PF08029_consen 44 HAVVPEKQVWDLMDKLKAAGAS 65 (75)
T ss_dssp EEEEECCCHHHHHHHHHCTT-E
T ss_pred EEEecHHHHHHHHHHHHHcCCC
Confidence 4444446899999999999985
No 177
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=32.93 E-value=1.1e+02 Score=17.99 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=21.9
Q ss_pred CcceEEEEeC--CHHHHHHHHHHcCCeee
Q psy18055 64 GFGHIGIQVP--DVTKACERFEQLGVEFV 90 (95)
Q Consensus 64 g~~~i~f~v~--d~~~~~~~l~~~G~~~~ 90 (95)
...++++.+. |+..+..++++.|.++.
T Consensus 105 ~iD~~vLvSgD~DF~~Lv~~lre~G~~V~ 133 (160)
T TIGR00288 105 NIDAVALVTRDADFLPVINKAKENGKETI 133 (160)
T ss_pred CCCEEEEEeccHhHHHHHHHHHHCCCEEE
Confidence 3458888887 48899999999998765
No 178
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=32.84 E-value=66 Score=16.77 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHcCCeeecCC
Q psy18055 74 DVTKACERFEQLGVEFVKKP 93 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~p 93 (95)
.+.+..++|++.|..++.|.
T Consensus 17 ~f~~~a~~L~~~G~~vvnPa 36 (92)
T PF14359_consen 17 AFNAAAKRLRAKGYEVVNPA 36 (92)
T ss_pred HHHHHHHHHHHCCCEEeCch
Confidence 47788899999999988763
No 179
>PF11782 DUF3319: Protein of unknown function (DUF3319); InterPro: IPR021753 This is a family of short bacterial proteins, a few of which are annotated as being minor tail protein. Otherwise the function is unknown.
Probab=32.80 E-value=22 Score=18.61 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=10.3
Q ss_pred CchhcHHHhhhcc
Q psy18055 10 DPRKSLPFYTKVL 22 (95)
Q Consensus 10 d~~~s~~FY~~~l 22 (95)
.+.++++||++.=
T Consensus 36 ~vKksIdww~dt~ 48 (88)
T PF11782_consen 36 EVKKSIDWWCDTG 48 (88)
T ss_pred HHHHHHHHHHhcc
Confidence 4789999998753
No 180
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=31.42 E-value=51 Score=20.29 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCeeecCCC
Q psy18055 76 TKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 76 ~~~~~~l~~~G~~~~~~p~ 94 (95)
..+...|.+.|++|...|.
T Consensus 40 ~~i~~~L~~kGY~vv~~P~ 58 (215)
T PF05818_consen 40 SQIISALQAKGYQVVDDPD 58 (215)
T ss_pred HHHHHHHHHCCCEEecChh
Confidence 4467899999999999885
No 181
>PF12512 DUF3717: Protein of unknown function (DUF3717) ; InterPro: IPR022191 This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 117 amino acids in length. There is a conserved AIN sequence motif. There are two completely conserved residues (L and Y) that may be functionally important.
Probab=31.04 E-value=9.3 Score=19.13 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=12.1
Q ss_pred EEEECCchhcHHHhhh
Q psy18055 5 MYRIKDPRKSLPFYTK 20 (95)
Q Consensus 5 ~l~v~d~~~s~~FY~~ 20 (95)
.|.+.|+|+++.|+++
T Consensus 3 ~i~I~dIE~AIN~WR~ 18 (71)
T PF12512_consen 3 DISITDIEAAINYWRA 18 (71)
T ss_pred ccCHHHHHHHHHHHHh
Confidence 3566788888888874
No 182
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=30.76 E-value=61 Score=17.51 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=18.2
Q ss_pred EeCCHHHHHHHHHHc-CCeeecC
Q psy18055 71 QVPDVTKACERFEQL-GVEFVKK 92 (95)
Q Consensus 71 ~v~d~~~~~~~l~~~-G~~~~~~ 92 (95)
.++.++.+.+.++++ |++++..
T Consensus 83 ~CP~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 83 PCPHIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred CCCCHHHHHHHHHHHhCCCEeee
Confidence 567899999999998 9988753
No 183
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=30.57 E-value=93 Score=16.60 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=21.5
Q ss_pred ecccCCCCCCCCcceEEEEeCCHHHHHHHHHH
Q psy18055 53 LTYHNGNSDPRGFGHIGIQVPDVTKACERFEQ 84 (95)
Q Consensus 53 ~~~~~~~~~~~g~~~i~f~v~d~~~~~~~l~~ 84 (95)
+.+..|..-+.|.+.+.|.+..-+.+++.+.+
T Consensus 60 FsfEaGRrc~tG~G~f~f~t~~a~~i~~~v~~ 91 (98)
T smart00310 60 FFFEAGRRCVSGPGEFTFQTVVAQEIFQLVLE 91 (98)
T ss_pred EEEEccCcCCCCCCEEEEEcCcHHHHHHHHHH
Confidence 34455544456778999999877777666544
No 184
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=30.56 E-value=47 Score=17.67 Aligned_cols=18 Identities=6% Similarity=0.146 Sum_probs=14.5
Q ss_pred ceeEEEECCchhcHHHhh
Q psy18055 2 QQTMYRIKDPRKSLPFYT 19 (95)
Q Consensus 2 ~hv~l~v~d~~~s~~FY~ 19 (95)
+++.+.-++++.+++||.
T Consensus 54 r~vviEFps~~~ar~~y~ 71 (96)
T COG5470 54 RNVVIEFPSLEAARDCYN 71 (96)
T ss_pred cEEEEEcCCHHHHHHHhc
Confidence 367778889999999984
No 185
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=30.05 E-value=1e+02 Score=16.95 Aligned_cols=25 Identities=12% Similarity=0.415 Sum_probs=19.9
Q ss_pred CcceEEEEeCC---HHHHHHHHHHcCCe
Q psy18055 64 GFGHIGIQVPD---VTKACERFEQLGVE 88 (95)
Q Consensus 64 g~~~i~f~v~d---~~~~~~~l~~~G~~ 88 (95)
|..-+.+.|+| +.++.+.+++.|+.
T Consensus 54 g~~KVVLkv~~e~eL~~L~~~a~~~gi~ 81 (116)
T cd02429 54 NMHKVVLEVPDEAALKNLSSKLTENSIK 81 (116)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 44589999986 66678889998875
No 186
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=29.73 E-value=66 Score=15.34 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=14.8
Q ss_pred eCCHHHHHHHHHHcCCeee
Q psy18055 72 VPDVTKACERFEQLGVEFV 90 (95)
Q Consensus 72 v~d~~~~~~~l~~~G~~~~ 90 (95)
+.+.+..++-.+++|+.+.
T Consensus 24 ~~~~e~~~~lA~~~Gf~ft 42 (64)
T TIGR03798 24 AEDPEDRVAIAKEAGFEFT 42 (64)
T ss_pred cCCHHHHHHHHHHcCCCCC
Confidence 4567888888888888765
No 187
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=29.53 E-value=72 Score=15.99 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=10.7
Q ss_pred HHHHHHHHcCCeeecCCC
Q psy18055 77 KACERFEQLGVEFVKKPN 94 (95)
Q Consensus 77 ~~~~~l~~~G~~~~~~p~ 94 (95)
++..|+..+|+++...+.
T Consensus 50 Dl~~Rl~~~g~~~~~~~~ 67 (78)
T PF02709_consen 50 DLYNRLWKAGLKIVRVPG 67 (78)
T ss_dssp HHHHHHHHTT---B-SST
T ss_pred HHHHHHHHcCCeEEecCC
Confidence 378999999998876553
No 188
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=29.53 E-value=1.2e+02 Score=17.61 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=18.0
Q ss_pred eeEEEEC-CchhcHHHhhhccCCEEeee
Q psy18055 3 QTMYRIK-DPRKSLPFYTKVLGMSLLKK 29 (95)
Q Consensus 3 hv~l~v~-d~~~s~~FY~~~lg~~~~~~ 29 (95)
.+.+.|. +-..+.+||+ .+||.....
T Consensus 162 ~i~l~v~~~N~~a~~~ye-k~Gf~~~~~ 188 (194)
T PRK10975 162 RLRVATQMGNLAALRLYI-RSGANIEST 188 (194)
T ss_pred EEEEEeCCCcHHHHHHHH-HCCCeEeEE
Confidence 4555554 4468899995 699987654
No 189
>PHA02503 putative transcription regulator; Provisional
Probab=29.47 E-value=28 Score=16.05 Aligned_cols=11 Identities=36% Similarity=0.745 Sum_probs=8.2
Q ss_pred hhcHHHhhhcc
Q psy18055 12 RKSLPFYTKVL 22 (95)
Q Consensus 12 ~~s~~FY~~~l 22 (95)
+.|+.||.+.|
T Consensus 16 q~sve~yke~l 26 (57)
T PHA02503 16 QESVEFYKEKL 26 (57)
T ss_pred HHHHHHHHHHH
Confidence 56788888766
No 190
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=29.31 E-value=79 Score=18.57 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHcCCeeecCCC
Q psy18055 74 DVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~p~ 94 (95)
.++.++++.++.|..|+.=|.
T Consensus 45 gLe~Ly~ky~~~Gf~VLgFPc 65 (162)
T COG0386 45 GLEALYKKYKDKGFEVLGFPC 65 (162)
T ss_pred HHHHHHHHHhhCCcEEEeccc
Confidence 599999999999999987664
No 191
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=29.21 E-value=68 Score=19.73 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=19.7
Q ss_pred eEEEEeC-CHHHHHHHHHHcCCee
Q psy18055 67 HIGIQVP-DVTKACERFEQLGVEF 89 (95)
Q Consensus 67 ~i~f~v~-d~~~~~~~l~~~G~~~ 89 (95)
.+++.++ |+..+++.++++|+++
T Consensus 32 ~fsiT~~iDiT~l~~~~K~~~~~f 55 (219)
T PRK13757 32 TYNQTVQLDITAFLKTVKKNKHKF 55 (219)
T ss_pred ceEEEEEEEHHHHHHHHHHcCCCh
Confidence 3777777 8999999999999875
No 192
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=29.02 E-value=85 Score=16.87 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCeeecCCC
Q psy18055 75 VTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 75 ~~~~~~~l~~~G~~~~~~p~ 94 (95)
++++.+.+++.|+++...|.
T Consensus 23 Va~~i~~lk~~glky~~~pm 42 (100)
T COG0011 23 VAEAIEILKESGLKYQLGPM 42 (100)
T ss_pred HHHHHHHHHHcCCceeecCc
Confidence 77788999999999988885
No 193
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=28.96 E-value=47 Score=15.83 Aligned_cols=17 Identities=6% Similarity=0.237 Sum_probs=13.6
Q ss_pred eEEEECCchhcHHHhhh
Q psy18055 4 TMYRIKDPRKSLPFYTK 20 (95)
Q Consensus 4 v~l~v~d~~~s~~FY~~ 20 (95)
+.+.-++.+.+.+||.+
T Consensus 42 viieFPs~~aa~~~~~s 58 (65)
T PF07045_consen 42 VIIEFPSMEAAKAWYNS 58 (65)
T ss_dssp EEEEESSHHHHHHHHCS
T ss_pred EEEECCCHHHHHHHHCC
Confidence 56777899999999863
No 194
>PF15569 Imm21: Immunity protein 21
Probab=28.75 E-value=58 Score=17.19 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=24.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHcCCeeecC
Q psy18055 64 GFGHIGIQVPDVTKACERFEQLGVEFVKK 92 (95)
Q Consensus 64 g~~~i~f~v~d~~~~~~~l~~~G~~~~~~ 92 (95)
|...++|.-+|+.++.+-++..++.|+.+
T Consensus 6 Gi~~~A~~~~dal~ii~~~~~~~i~ILGG 34 (91)
T PF15569_consen 6 GINEYAYPFQDALKIINICEEKNIPILGG 34 (91)
T ss_pred CceeeecCHHHHHHHHHHHHhcCceEEcc
Confidence 55678888889999999999999988764
No 195
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=28.64 E-value=39 Score=12.59 Aligned_cols=14 Identities=7% Similarity=0.389 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHcCC
Q psy18055 74 DVTKACERFEQLGV 87 (95)
Q Consensus 74 d~~~~~~~l~~~G~ 87 (95)
+...+++++.+.|+
T Consensus 18 ~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 18 EALEVFDEMRERGI 31 (31)
T ss_pred HHHHHHHHHhHCcC
Confidence 35556677766663
No 196
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=28.59 E-value=43 Score=17.57 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHcCCee
Q psy18055 74 DVTKACERFEQLGVEF 89 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~ 89 (95)
+++++.+.|+++|+++
T Consensus 76 eI~eAK~dLr~kGv~~ 91 (91)
T PF08285_consen 76 EIKEAKADLRKKGVDV 91 (91)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 3666677777777753
No 197
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=28.48 E-value=54 Score=19.88 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=17.8
Q ss_pred ceEEEEeC-CHHHHHHHHHHcCCee
Q psy18055 66 GHIGIQVP-DVTKACERFEQLGVEF 89 (95)
Q Consensus 66 ~~i~f~v~-d~~~~~~~l~~~G~~~ 89 (95)
..+++.++ |+..+++.++++|+++
T Consensus 26 p~~svT~~lDvT~l~~~~K~~~~~F 50 (206)
T PF00302_consen 26 PYFSVTVNLDVTNLYKYAKEKGLSF 50 (206)
T ss_dssp EEEEEEEEEE-HHHHHHHHHTT--H
T ss_pred ceEecceeEEhHHHHHHHHHcCCCc
Confidence 36777777 8999999999999875
No 198
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=28.36 E-value=70 Score=16.68 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCeeecCCC
Q psy18055 75 VTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 75 ~~~~~~~l~~~G~~~~~~p~ 94 (95)
++++.+.+++.|+++...|.
T Consensus 19 V~~~i~~i~~sgl~y~v~pm 38 (92)
T PF01910_consen 19 VAEAIEVIKESGLKYEVGPM 38 (92)
T ss_dssp HHHHHHHHHTSSSEEEEETT
T ss_pred HHHHHHHHHHcCCceEEcCC
Confidence 67788889999999887775
No 199
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=27.93 E-value=1.1e+02 Score=16.36 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=17.5
Q ss_pred CcceEEEEeCC---HHHHHHHHHHcCCe
Q psy18055 64 GFGHIGIQVPD---VTKACERFEQLGVE 88 (95)
Q Consensus 64 g~~~i~f~v~d---~~~~~~~l~~~G~~ 88 (95)
|.....++++| ++++.+.|++.|+-
T Consensus 70 GvH~HtI~a~~~e~l~~I~~~L~~~G~L 97 (98)
T PF02829_consen 70 GVHYHTIEAPDEEDLDKIEEALKKKGFL 97 (98)
T ss_dssp GEEEEEEEESSHHHHHHHHHHHHHTT-B
T ss_pred CEeeEEEEECCHHHHHHHHHHHHHCCCc
Confidence 44455566665 88899999999973
No 200
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=27.76 E-value=55 Score=17.27 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCeeecCC
Q psy18055 75 VTKACERFEQLGVEFVKKP 93 (95)
Q Consensus 75 ~~~~~~~l~~~G~~~~~~p 93 (95)
-++..+..+++|+++...|
T Consensus 34 Ae~II~~Ake~~Vpi~edp 52 (92)
T COG2257 34 AEKIIEKAKEHGVPIQEDP 52 (92)
T ss_pred HHHHHHHHHHcCCCcccCH
Confidence 5778899999999998776
No 201
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=27.24 E-value=38 Score=13.29 Aligned_cols=13 Identities=46% Similarity=0.772 Sum_probs=10.4
Q ss_pred CCchhcHHHhhhc
Q psy18055 9 KDPRKSLPFYTKV 21 (95)
Q Consensus 9 ~d~~~s~~FY~~~ 21 (95)
.|.+++..||+..
T Consensus 19 ~d~~~A~~~~~~A 31 (36)
T smart00671 19 KDLEKALEYYKKA 31 (36)
T ss_pred cCHHHHHHHHHHH
Confidence 5888899998764
No 202
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=26.74 E-value=1e+02 Score=16.30 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCeeecCCC
Q psy18055 75 VTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 75 ~~~~~~~l~~~G~~~~~~p~ 94 (95)
+++..+.+++.|+++...|.
T Consensus 21 Va~~i~~l~~sGl~y~~~pm 40 (97)
T TIGR00106 21 VAAAIEVLKESGLKYELHPM 40 (97)
T ss_pred HHHHHHHHHHcCCCeEecCC
Confidence 67788888899999888775
No 203
>PTZ00330 acetyltransferase; Provisional
Probab=26.68 E-value=1.1e+02 Score=16.55 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=15.8
Q ss_pred eEEEECCchhcHHHhhhccCCEEeee
Q psy18055 4 TMYRIKDPRKSLPFYTKVLGMSLLKK 29 (95)
Q Consensus 4 v~l~v~d~~~s~~FY~~~lg~~~~~~ 29 (95)
+.+.+ -..|.+|| +.+||+....
T Consensus 119 l~l~~--n~~a~~~y-~k~GF~~~~~ 141 (147)
T PTZ00330 119 VILDC--TEDMVAFY-KKLGFRACER 141 (147)
T ss_pred EEEec--ChHHHHHH-HHCCCEEece
Confidence 44444 36789999 5889986543
No 204
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=26.28 E-value=1.2e+02 Score=16.41 Aligned_cols=32 Identities=9% Similarity=0.262 Sum_probs=21.0
Q ss_pred ecccCCCCCCCCcceEEEEeCCHHHHHHHHHH
Q psy18055 53 LTYHNGNSDPRGFGHIGIQVPDVTKACERFEQ 84 (95)
Q Consensus 53 ~~~~~~~~~~~g~~~i~f~v~d~~~~~~~l~~ 84 (95)
..+..|..-+.|.+.+.|.|..-+++++.+.+
T Consensus 59 FsFEAGRRC~tGeG~f~F~t~~~~~if~~v~~ 90 (102)
T cd01202 59 FSFESGRRCQTGEGIFAFRCKRAEELFNLLQS 90 (102)
T ss_pred EEEEccCcCCCCCCEEEEEcCCHHHHHHHHHH
Confidence 34445543346778999999987776655543
No 205
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=26.19 E-value=86 Score=17.92 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCeeecCCC
Q psy18055 75 VTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 75 ~~~~~~~l~~~G~~~~~~p~ 94 (95)
+..+.++|++.|+++...|.
T Consensus 97 L~~le~~L~~~g~eV~raPF 116 (138)
T PF08915_consen 97 LKKLEERLKSRGFEVYRAPF 116 (138)
T ss_dssp HHHHHHHHHHTT-EEEE--T
T ss_pred HHHHHHHHHhCCCeEEEeCC
Confidence 67788999999999988774
No 206
>PF09741 DUF2045: Uncharacterized conserved protein (DUF2045); InterPro: IPR019141 This entry is the conserved 250 residues of proteins of approximately 450 amino acids. It contains several highly conserved motifs including a CVxLxxxD motif. The function is unknown.
Probab=26.03 E-value=33 Score=21.41 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=16.3
Q ss_pred CcceEEEEeCCHHHHHHHHH
Q psy18055 64 GFGHIGIQVPDVTKACERFE 83 (95)
Q Consensus 64 g~~~i~f~v~d~~~~~~~l~ 83 (95)
...+|+|.++|.+++++.+.
T Consensus 132 ~YP~i~F~vD~Fde~F~~~~ 151 (237)
T PF09741_consen 132 TYPNICFTVDDFDEVFDDVV 151 (237)
T ss_pred ccCeEEEEecChhhhhheEE
Confidence 34599999999999987653
No 207
>PHA00212 putative transcription regulator
Probab=25.94 E-value=34 Score=16.06 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=7.9
Q ss_pred hhcHHHhhhcc
Q psy18055 12 RKSLPFYTKVL 22 (95)
Q Consensus 12 ~~s~~FY~~~l 22 (95)
+.|+.||...|
T Consensus 18 q~sve~yk~~l 28 (63)
T PHA00212 18 QHSVEWYKKQL 28 (63)
T ss_pred HHHHHHHHHHH
Confidence 56778887665
No 208
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=25.87 E-value=1.3e+02 Score=16.55 Aligned_cols=33 Identities=15% Similarity=0.416 Sum_probs=22.0
Q ss_pred eeEEEEC-CchhcHHHhhhccCCEEeeeeeCCCCc
Q psy18055 3 QTMYRIK-DPRKSLPFYTKVLGMSLLKKLDFPAMK 36 (95)
Q Consensus 3 hv~l~v~-d~~~s~~FY~~~lg~~~~~~~~~~~~~ 36 (95)
.+.+.+. +-.++.+.|+ .+||...+...+++..
T Consensus 115 ~i~~~~~~~N~~~~~~~~-k~GF~~~g~~~~~~~~ 148 (152)
T PF13523_consen 115 RIVLDPHEDNTRAIRLYE-KAGFRKVGEFEFPDKP 148 (152)
T ss_dssp EEEEEEBTT-HHHHHHHH-HTT-EEEEEEEESSEE
T ss_pred EEEEecCcCCHHHHHHHH-HcCCEEeeEEECCCCe
Confidence 3444444 5678888886 8999999888766654
No 209
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=25.51 E-value=1e+02 Score=17.93 Aligned_cols=23 Identities=26% Similarity=0.663 Sum_probs=18.2
Q ss_pred EEEEeCCHHHHHHHHHHcCCeee
Q psy18055 68 IGIQVPDVTKACERFEQLGVEFV 90 (95)
Q Consensus 68 i~f~v~d~~~~~~~l~~~G~~~~ 90 (95)
+=|.+.|.+.+.++|.+.|....
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~ 28 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFI 28 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCcccc
Confidence 44677899999999999986543
No 210
>PF13280 WYL: WYL domain
Probab=25.49 E-value=1.2e+02 Score=16.79 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=22.4
Q ss_pred ceEEEEeCCHHHHHHHHHHcC--CeeecCC
Q psy18055 66 GHIGIQVPDVTKACERFEQLG--VEFVKKP 93 (95)
Q Consensus 66 ~~i~f~v~d~~~~~~~l~~~G--~~~~~~p 93 (95)
-.+.+.+.|.+.+...+...| ++++.|.
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~v~Vl~P~ 158 (172)
T PF13280_consen 129 IIVTFPVNDSEELLRWLLSFGDHVEVLEPE 158 (172)
T ss_pred EEEEEEEechHHHHHHHHHhCCCEEEECCH
Confidence 377888889999999999988 6776653
No 211
>PF11001 DUF2841: Protein of unknown function (DUF2841); InterPro: IPR021264 This family of proteins with unknown function are all present in yeast.
Probab=25.45 E-value=26 Score=19.60 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=15.0
Q ss_pred EEECCchhcHHHhhhccC
Q psy18055 6 YRIKDPRKSLPFYTKVLG 23 (95)
Q Consensus 6 l~v~d~~~s~~FY~~~lg 23 (95)
|.+.|-++..+||.+.|.
T Consensus 1 l~igd~~~v~~yy~~~F~ 18 (126)
T PF11001_consen 1 LEIGDEEAVRAYYESAFK 18 (126)
T ss_pred CCcCCHHHHHHHHHHHHH
Confidence 346788999999999986
No 212
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=25.29 E-value=21 Score=13.37 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=11.0
Q ss_pred ECCchhcHHHhhhccCC
Q psy18055 8 IKDPRKSLPFYTKVLGM 24 (95)
Q Consensus 8 v~d~~~s~~FY~~~lg~ 24 (95)
...++...+|+. -+|+
T Consensus 15 ~~~l~~~~~~l~-~~g~ 30 (31)
T smart00733 15 EKKLKPKVEFLK-ELGF 30 (31)
T ss_pred HHHhhHHHHHHH-HcCC
Confidence 455777788887 6665
No 213
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=25.24 E-value=1.3e+02 Score=16.47 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=18.4
Q ss_pred eeEEEE-CCchhcHHHhhhccCCEEeee
Q psy18055 3 QTMYRI-KDPRKSLPFYTKVLGMSLLKK 29 (95)
Q Consensus 3 hv~l~v-~d~~~s~~FY~~~lg~~~~~~ 29 (95)
.+.+.| .+-.+|++||+ .+||.....
T Consensus 115 ~i~l~v~~~N~~a~~~y~-k~GF~~~g~ 141 (162)
T PRK10140 115 RIELTVFVDNAPAIKVYK-KYGFEIEGT 141 (162)
T ss_pred EEEEEEEcCCHHHHHHHH-HCCCEEEee
Confidence 355555 34667899995 899987655
No 214
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=24.96 E-value=72 Score=14.29 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHcCCeee
Q psy18055 74 DVTKACERFEQLGVEFV 90 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~~ 90 (95)
++..+.++|++.|+-+.
T Consensus 20 ~~~~~l~~l~~~g~~is 36 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFRIS 36 (48)
T ss_pred hHHHHHHHHHHcCcccC
Confidence 77788888988887664
No 215
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=24.92 E-value=37 Score=13.27 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=11.0
Q ss_pred CCchhcHHHhhhccCC
Q psy18055 9 KDPRKSLPFYTKVLGM 24 (95)
Q Consensus 9 ~d~~~s~~FY~~~lg~ 24 (95)
.+.++++..|+..+.+
T Consensus 15 ~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 15 GDYEEALEYYQRALEL 30 (34)
T ss_dssp T-HHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHH
Confidence 4677888888877643
No 216
>smart00642 Aamy Alpha-amylase domain.
Probab=24.86 E-value=59 Score=18.84 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHcCCeeecC
Q psy18055 73 PDVTKACERFEQLGVEFVKK 92 (95)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~ 92 (95)
+++.++.+++.++|++++..
T Consensus 70 ~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 70 EDFKELVDAAHARGIKVILD 89 (166)
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 67999999999999998754
No 217
>KOG2582|consensus
Probab=24.85 E-value=47 Score=22.40 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=21.8
Q ss_pred eeEEEECCchhcHHHhhhccCCEEe
Q psy18055 3 QTMYRIKDPRKSLPFYTKVLGMSLL 27 (95)
Q Consensus 3 hv~l~v~d~~~s~~FY~~~lg~~~~ 27 (95)
-+++..+|.++|.-||..+++.+..
T Consensus 191 ~iciglk~fe~Al~~~e~~v~~Pa~ 215 (422)
T KOG2582|consen 191 MICIGLKRFERALYLLEICVTTPAM 215 (422)
T ss_pred eeeeccccHHHHHHHHHHHHhcchh
Confidence 4788999999999999999997754
No 218
>COG3100 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.28 E-value=1.2e+02 Score=16.12 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHcCCeeecCCC
Q psy18055 73 PDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
.|++.+.+.+++.|+-+..+|.
T Consensus 65 ~dv~kV~~~i~~QGfyLQ~pp~ 86 (103)
T COG3100 65 ADVEKVKQAIEEQGFYLQLPPP 86 (103)
T ss_pred hhHHHHHHHHHhcceeEecCCC
Confidence 4789999999999998877764
No 219
>PRK10314 putative acyltransferase; Provisional
Probab=24.19 E-value=85 Score=17.73 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=12.8
Q ss_pred hhcHHHhhhccCCEEeee
Q psy18055 12 RKSLPFYTKVLGMSLLKK 29 (95)
Q Consensus 12 ~~s~~FY~~~lg~~~~~~ 29 (95)
..+..||+ .+||.....
T Consensus 118 ~~a~~fY~-k~GF~~~g~ 134 (153)
T PRK10314 118 AHLQNFYQ-SFGFIPVTE 134 (153)
T ss_pred HHHHHHHH-HCCCEECCC
Confidence 45778996 599987654
No 220
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=24.00 E-value=1.9e+02 Score=18.83 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=21.5
Q ss_pred ceEEEEeCCHHHHHHHHHHcCCeeec
Q psy18055 66 GHIGIQVPDVTKACERFEQLGVEFVK 91 (95)
Q Consensus 66 ~~i~f~v~d~~~~~~~l~~~G~~~~~ 91 (95)
.++.+.+++.+++.+.++++|+.+..
T Consensus 304 ~f~~~~~~~~~~~~~~l~~~gI~v~~ 329 (364)
T PRK04781 304 NFLLVRFDDAEAAFQALLAAGVVVRD 329 (364)
T ss_pred cEEEEEcCCHHHHHHHHHHCCeEEee
Confidence 47888888888889999999988764
No 221
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=23.99 E-value=79 Score=14.39 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=11.5
Q ss_pred HHHHHHHcCCeeecCC
Q psy18055 78 ACERFEQLGVEFVKKP 93 (95)
Q Consensus 78 ~~~~l~~~G~~~~~~p 93 (95)
-...|+++|++++.-|
T Consensus 23 k~r~L~~~G~~Vi~Ip 38 (58)
T PF08373_consen 23 KHRHLKALGYKVISIP 38 (58)
T ss_pred HHHHHHHCCCEEEEec
Confidence 3466788898887654
No 222
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=23.89 E-value=42 Score=12.99 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=11.6
Q ss_pred CCchhcHHHhhhccCC
Q psy18055 9 KDPRKSLPFYTKVLGM 24 (95)
Q Consensus 9 ~d~~~s~~FY~~~lg~ 24 (95)
.|.++|...|+..+.+
T Consensus 15 ~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 15 GDYEEALEYFEKALEL 30 (34)
T ss_dssp TSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5678888888876643
No 223
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=23.80 E-value=88 Score=14.09 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCeeecCCC
Q psy18055 77 KACERFEQLGVEFVKKPN 94 (95)
Q Consensus 77 ~~~~~l~~~G~~~~~~p~ 94 (95)
.-.+.|+++|+.+...+.
T Consensus 19 ~Q~~~L~~~Gi~~~~~~~ 36 (47)
T PF13986_consen 19 KQIRWLRRNGIPFVVRAD 36 (47)
T ss_pred HHHHHHHHCCCeeEECCC
Confidence 346788888988876653
No 224
>PHA01735 hypothetical protein
Probab=23.52 E-value=89 Score=15.62 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=15.9
Q ss_pred eCCHHHHHHHHHHcCCeeecC
Q psy18055 72 VPDVTKACERFEQLGVEFVKK 92 (95)
Q Consensus 72 v~d~~~~~~~l~~~G~~~~~~ 92 (95)
+.|+.+..+.|+++++.-...
T Consensus 32 taDL~AA~d~Lk~NdItgv~~ 52 (76)
T PHA01735 32 TADLRAACDWLKSNDITGVAV 52 (76)
T ss_pred HHHHHHHHHHHHHCCCceeeC
Confidence 458889999999998765443
No 225
>KOG3111|consensus
Probab=23.39 E-value=1.9e+02 Score=17.83 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=19.0
Q ss_pred CcceEEEEe---CCHHHHHHHHHHcCCeee
Q psy18055 64 GFGHIGIQV---PDVTKACERFEQLGVEFV 90 (95)
Q Consensus 64 g~~~i~f~v---~d~~~~~~~l~~~G~~~~ 90 (95)
|...++|.+ ++...+.++++++|.++-
T Consensus 87 gas~~tfH~E~~q~~~~lv~~ir~~Gmk~G 116 (224)
T KOG3111|consen 87 GASLFTFHYEATQKPAELVEKIREKGMKVG 116 (224)
T ss_pred CcceEEEEEeeccCHHHHHHHHHHcCCeee
Confidence 434555554 468889999999998753
No 226
>PRK08526 threonine dehydratase; Provisional
Probab=23.35 E-value=1.8e+02 Score=19.63 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=20.3
Q ss_pred eEEEEeCC---HHHHHHHHHHcCCeeecC
Q psy18055 67 HIGIQVPD---VTKACERFEQLGVEFVKK 92 (95)
Q Consensus 67 ~i~f~v~d---~~~~~~~l~~~G~~~~~~ 92 (95)
.+.+++.+ ++++.+.|+++|+++..+
T Consensus 374 ~~~~e~~~~~~~~~~~~~l~~~g~~~~~~ 402 (403)
T PRK08526 374 SITLETKGKEHQEEIRKILTEKGFNFYEE 402 (403)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCCeEeC
Confidence 46666665 888999999999987654
No 227
>PF09145 Ubiq-assoc: Ubiquitin-associated; InterPro: IPR015228 Ubiquitin-associated domains contain approximately 40 residues and bind ubiquitin noncovalently. They adopt a secondary structure consisting of three alpha-helices, and have been identified in various modular proteins involved in protein trafficking, clathrin assembly/disassembly, DNA repair, proteasomal degradation, and cell cycle regulation []. ; PDB: 1PGY_A.
Probab=23.03 E-value=50 Score=14.93 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=8.3
Q ss_pred CchhcHHHhhhc
Q psy18055 10 DPRKSLPFYTKV 21 (95)
Q Consensus 10 d~~~s~~FY~~~ 21 (95)
+++++..+|..-
T Consensus 19 sid~A~~yYe~G 30 (46)
T PF09145_consen 19 SIDKANDYYERG 30 (46)
T ss_dssp -SHHHHHHHHHH
T ss_pred CHHHHHHHHHcC
Confidence 577888888753
No 228
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.94 E-value=1.3e+02 Score=15.95 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHcCCeeecC
Q psy18055 73 PDVTKACERFEQLGVEFVKK 92 (95)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~ 92 (95)
+|.+.+++-|.++|+.+..+
T Consensus 12 ~~~dri~~~l~e~g~~v~~e 31 (96)
T COG4004 12 PDPDRIMRGLSELGWTVSEE 31 (96)
T ss_pred CCHHHHHHHHHHhCeeEeec
Confidence 67888889999998877653
No 229
>PLN00139 hypothetical protein; Provisional
Probab=22.79 E-value=81 Score=20.55 Aligned_cols=25 Identities=24% Similarity=0.342 Sum_probs=20.9
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCC
Q psy18055 69 GIQVPDVTKACERFEQLGVEFVKKP 93 (95)
Q Consensus 69 ~f~v~d~~~~~~~l~~~G~~~~~~p 93 (95)
+|.++|-+++-+.+++.|+++.+-+
T Consensus 194 ~F~t~d~~eve~~~~~~g~~~eW~~ 218 (320)
T PLN00139 194 AFGTSDKAEAERRAKALGMDMEWLP 218 (320)
T ss_pred HhCCCCHHHHHHHHHHcCCeEEEcC
Confidence 4668899999999999999887654
No 230
>KOG4285|consensus
Probab=22.74 E-value=18 Score=23.53 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=18.0
Q ss_pred EEECCchhcHHHhhhccCCEEee
Q psy18055 6 YRIKDPRKSLPFYTKVLGMSLLK 28 (95)
Q Consensus 6 l~v~d~~~s~~FY~~~lg~~~~~ 28 (95)
+.+.+..++.++|.++|||.+..
T Consensus 187 ~pte~~~d~~D~WVTVfGFppg~ 209 (350)
T KOG4285|consen 187 QPTEEEADAADTWVTVFGFPPGQ 209 (350)
T ss_pred cccccccccccceEEEeccCccc
Confidence 44567788889999999998753
No 231
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=22.67 E-value=99 Score=14.25 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHcCCee
Q psy18055 74 DVTKACERFEQLGVEF 89 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~ 89 (95)
+++++.+.|+++|+.+
T Consensus 10 ~~~~a~~~l~~~g~~~ 25 (63)
T PF03793_consen 10 TYDEAKSILEAAGLTV 25 (63)
T ss_dssp BHHHHHHHHHHTT-EE
T ss_pred cHHHHHHHHHHCCCEE
Confidence 4788899999999854
No 232
>PRK08639 threonine dehydratase; Validated
Probab=22.54 E-value=1.8e+02 Score=19.71 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=20.1
Q ss_pred eEEEEeCC---HHHHHHHHHHcCCeeec
Q psy18055 67 HIGIQVPD---VTKACERFEQLGVEFVK 91 (95)
Q Consensus 67 ~i~f~v~d---~~~~~~~l~~~G~~~~~ 91 (95)
.+.+++.+ ++++.+.|+++|+++..
T Consensus 381 ~v~iE~~~~~h~~~i~~~L~~~Gy~~~~ 408 (420)
T PRK08639 381 LVGIELKDAEDYDGLIERMEAFGPSYID 408 (420)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCceEE
Confidence 66777765 78899999999998753
No 233
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=22.40 E-value=56 Score=12.32 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHcCCee
Q psy18055 74 DVTKACERFEQLGVEF 89 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~ 89 (95)
+...+++++++.|++.
T Consensus 18 ~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 18 EALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 3556677788877653
No 234
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.19 E-value=1.3e+02 Score=21.24 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.0
Q ss_pred cceEEEEe---CCHHHHHHHHHHcCCee
Q psy18055 65 FGHIGIQV---PDVTKACERFEQLGVEF 89 (95)
Q Consensus 65 ~~~i~f~v---~d~~~~~~~l~~~G~~~ 89 (95)
.||+.|++ +|...++.||.++|++.
T Consensus 351 TGHLVlSTlHtnda~~ai~RL~~mGv~~ 378 (500)
T COG2804 351 TGHLVLSTLHTNDAPGAITRLLEMGVEP 378 (500)
T ss_pred cCCeEeeecccCchHHHHHHHHHcCCCH
Confidence 46888885 79999999999999863
No 235
>KOG3235|consensus
Probab=21.99 E-value=1.2e+02 Score=18.04 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=20.4
Q ss_pred eeEEEEC-CchhcHHHhhhccCCEEeee
Q psy18055 3 QTMYRIK-DPRKSLPFYTKVLGMSLLKK 29 (95)
Q Consensus 3 hv~l~v~-d~~~s~~FY~~~lg~~~~~~ 29 (95)
.|.|.|+ +-.+++..|++.|||.+..-
T Consensus 108 yvsLHVR~SNraAl~LY~~tl~F~v~ev 135 (193)
T KOG3235|consen 108 YVSLHVRKSNRAALHLYKNTLGFVVCEV 135 (193)
T ss_pred EEEEeeecccHHHHHhhhhccceEEeec
Confidence 3556666 45678899999999998754
No 236
>KOG0081|consensus
Probab=21.83 E-value=79 Score=18.83 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=14.2
Q ss_pred cHHHhhhccCCEEeeee
Q psy18055 14 SLPFYTKVLGMSLLKKL 30 (95)
Q Consensus 14 s~~FY~~~lg~~~~~~~ 30 (95)
+.+||++.+||-+....
T Consensus 84 TTAFfRDAMGFlLiFDl 100 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDL 100 (219)
T ss_pred HHHHHHhhccceEEEec
Confidence 56899999999887664
No 237
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.72 E-value=74 Score=15.46 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHcCCeee
Q psy18055 73 PDVTKACERFEQLGVEFV 90 (95)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~ 90 (95)
+++..+.+.++++|++++
T Consensus 61 ~~~~~~~~~a~~~g~~ii 78 (87)
T cd04795 61 EELLAALEIAKELGIPVI 78 (87)
T ss_pred HHHHHHHHHHHHcCCeEE
Confidence 358888999999998875
No 238
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=21.71 E-value=46 Score=12.76 Aligned_cols=17 Identities=12% Similarity=0.495 Sum_probs=11.2
Q ss_pred ECCchhcHHHhhhccCC
Q psy18055 8 IKDPRKSLPFYTKVLGM 24 (95)
Q Consensus 8 v~d~~~s~~FY~~~lg~ 24 (95)
..+.++++..|+..+.+
T Consensus 14 ~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 14 LGNYEEAIEYFEKALEL 30 (34)
T ss_dssp TT-HHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHH
Confidence 35677888888876643
No 239
>PF00594 Gla: Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; InterPro: IPR000294 The GLA (gamma-carboxyglutamic acid-rich) domain contains glutamate residues that have been post-translationally modified by vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla) [, , ]. All glutamic acid (Glu) residues present in the GLA domain are potential carboxylation sites; in coagulation proteins, all Gu residues are modified to Gla, while in osteocalcin and matrix Gla proteins only some Glu residues are modified to Gla. The GLA domain is responsible for the high-affinity binding of calcium ions. It starts at the N-terminal extremity of the mature form of proteins and ends with a conserved aromatic residue; a conserved Gla-x(3)-Gla-x-Cys motif [] is found in the middle of the domain which seems to be important for substrate recognition by the carboxylase. The 3D structure of the GLA domain has been solved [, ]. Calcium ions induce conformational changes in the GLA domain that and are necessary for the proper folding of the GLA domain. A common structural feature of functional GLA domains is the clustering of N-terminal hydrophobic residues into a hydrophobic patch that mediates interaction with the cell surface membrane []. Proteins known to contain a GLA domain include []: Coagulation factor X [] Coagulation factor VII [] Coagulation factor IX [] Coagulation factor XIV (vitamin K-dependent protein C) [] Vitamin K-dependent protein S [] Vitamin K-dependent protein Z [] Prothrombin Transthyretin Osteocalcin (also known as bone-Gla protein, BGP) Matrix Gla protein (MGP) [] Inter-alpha-trypsin inhibitor heavy chain H2 Growth arrest-specific protein 6 (Gas-6) [] ; GO: 0005509 calcium ion binding, 0005576 extracellular region; PDB: 1Q3M_A 1VZM_C 2PF1_A 1NL2_A 1NL1_A 2SPT_A 2PF2_A 2ZP0_L 1W0Y_L 2AEI_L ....
Probab=21.54 E-value=50 Score=14.54 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=8.3
Q ss_pred CchhcHHHhhhccC
Q psy18055 10 DPRKSLPFYTKVLG 23 (95)
Q Consensus 10 d~~~s~~FY~~~lg 23 (95)
|...+..||...+|
T Consensus 29 ~~~~t~~fw~~Y~g 42 (42)
T PF00594_consen 29 DTEGTNAFWKKYFG 42 (42)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred ChHhHHHHHHHhcC
Confidence 34556677766554
No 240
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=21.31 E-value=1.1e+02 Score=14.51 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHcCCee
Q psy18055 73 PDVTKACERFEQLGVEF 89 (95)
Q Consensus 73 ~d~~~~~~~l~~~G~~~ 89 (95)
+....+.+.|.++|+++
T Consensus 12 ~~C~ka~~~L~~~gi~~ 28 (73)
T cd03027 12 EDCTAVRLFLREKGLPY 28 (73)
T ss_pred hhHHHHHHHHHHCCCce
Confidence 34555566666666554
No 241
>COG2160 AraA L-arabinose isomerase [Carbohydrate transport and metabolism]
Probab=21.16 E-value=2.2e+02 Score=19.72 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=23.0
Q ss_pred CcceEEEEeC-CHHHHHHHHHHcCCeeec
Q psy18055 64 GFGHIGIQVP-DVTKACERFEQLGVEFVK 91 (95)
Q Consensus 64 g~~~i~f~v~-d~~~~~~~l~~~G~~~~~ 91 (95)
|..|.+|++. .++++++..+-.|++++.
T Consensus 444 gaHHtv~s~~~~~e~~~dwaem~gie~v~ 472 (497)
T COG2160 444 GAHHTVFSVALTAEQMRDWAEMLGIEVVV 472 (497)
T ss_pred CccceEEeecccHHHHHHHHHHhCCEEEE
Confidence 4459999998 689999999999988764
No 242
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=21.07 E-value=2e+02 Score=19.45 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=19.5
Q ss_pred eEEEEeCC---HHHHHHHHHHcCCeee
Q psy18055 67 HIGIQVPD---VTKACERFEQLGVEFV 90 (95)
Q Consensus 67 ~i~f~v~d---~~~~~~~l~~~G~~~~ 90 (95)
.+.+++.+ ++++.+.|+++|+++.
T Consensus 370 ~v~iE~~~~~h~~~i~~~L~~~Gy~~~ 396 (409)
T TIGR02079 370 LIGIELNDKEDFAGLLERMAAADIHYE 396 (409)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCCeE
Confidence 67777765 7788999999999875
No 243
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=20.72 E-value=1.1e+02 Score=13.84 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=11.4
Q ss_pred HHHHHHHHHcCCeeec
Q psy18055 76 TKACERFEQLGVEFVK 91 (95)
Q Consensus 76 ~~~~~~l~~~G~~~~~ 91 (95)
.++.+.|++.|+.+..
T Consensus 2 ~el~k~L~~~G~~~~r 17 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVR 17 (56)
T ss_dssp HHHHHHHHHTT-EEEE
T ss_pred hHHHHHHHHCCCEEec
Confidence 5677888999987653
No 244
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.72 E-value=1.2e+02 Score=16.08 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHcCCeeec
Q psy18055 74 DVTKACERFEQLGVEFVK 91 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~~~ 91 (95)
+-+.|..+|.++|+++..
T Consensus 80 ~~~SW~~~l~~~g~~v~~ 97 (103)
T cd03413 80 EPDSWKSILEAAGIKVET 97 (103)
T ss_pred CchhHHHHHHHCCCeeEE
Confidence 357899999999998753
No 245
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=20.68 E-value=1.4e+02 Score=16.59 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=20.7
Q ss_pred eEEEEeCCHHHHHHHHHHcCCeeecCCC
Q psy18055 67 HIGIQVPDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 67 ~i~f~v~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
.+-+.-..=...++.|+++|+++...|.
T Consensus 67 dvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 67 DVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred CEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3444445577899999999999987663
No 246
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=20.66 E-value=1.2e+02 Score=14.51 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=15.0
Q ss_pred EEEEeCC----HHHHHHHHHHcCCeee
Q psy18055 68 IGIQVPD----VTKACERFEQLGVEFV 90 (95)
Q Consensus 68 i~f~v~d----~~~~~~~l~~~G~~~~ 90 (95)
+.|.++| +..+.+.++++|+.+.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~ 28 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLT 28 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEE
Confidence 4555544 6677777788877554
No 247
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=20.63 E-value=86 Score=12.74 Aligned_cols=22 Identities=23% Similarity=0.307 Sum_probs=13.1
Q ss_pred EEEEeCCHHHHHHHHHHcCCee
Q psy18055 68 IGIQVPDVTKACERFEQLGVEF 89 (95)
Q Consensus 68 i~f~v~d~~~~~~~l~~~G~~~ 89 (95)
+.|++.|-.+..+.+.++|+.-
T Consensus 2 V~~WT~d~~~~~~~~l~~GVDg 23 (30)
T PF13653_consen 2 VYFWTPDKPASWRELLDLGVDG 23 (30)
T ss_dssp EEEET--SHHHHHHHHHHT-SE
T ss_pred eEEecCCCHHHHHHHHHcCCCE
Confidence 4556666667778888888754
No 248
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=20.51 E-value=76 Score=12.07 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=10.0
Q ss_pred HHHHHHHHHHcCCe
Q psy18055 75 VTKACERFEQLGVE 88 (95)
Q Consensus 75 ~~~~~~~l~~~G~~ 88 (95)
...+++.+++.|++
T Consensus 20 a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 20 ALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHhCCC
Confidence 55677888887764
No 249
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=20.50 E-value=65 Score=20.39 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHcCCeeecCCC
Q psy18055 73 PDVTKACERFEQLGVEFVKKPN 94 (95)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~p~ 94 (95)
+++..+.+++.+.|+.++-+|-
T Consensus 124 enLr~aAd~l~~~gi~~liEpl 145 (260)
T COG3622 124 ENLRYAADLLAAEGIRLLIEPL 145 (260)
T ss_pred HHHHHHHHHHHhcCCEEEEecC
Confidence 3566677889999999988874
No 250
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=20.48 E-value=1.4e+02 Score=15.13 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=10.0
Q ss_pred eEEEEeCCHHHHHHHHHH
Q psy18055 67 HIGIQVPDVTKACERFEQ 84 (95)
Q Consensus 67 ~i~f~v~d~~~~~~~l~~ 84 (95)
-++-..+|++++.++|++
T Consensus 19 iv~~~~~d~d~Al~eM~e 36 (74)
T TIGR03884 19 IVSTESDNVDEIVENLRE 36 (74)
T ss_pred EEEEecCCHHHHHHHHHH
Confidence 344445676666655544
No 251
>PF14149 YhfH: YhfH-like protein
Probab=20.48 E-value=56 Score=14.14 Aligned_cols=8 Identities=13% Similarity=0.542 Sum_probs=4.0
Q ss_pred hcHHHhhh
Q psy18055 13 KSLPFYTK 20 (95)
Q Consensus 13 ~s~~FY~~ 20 (95)
....||++
T Consensus 3 ~~~eFfrn 10 (37)
T PF14149_consen 3 NIVEFFRN 10 (37)
T ss_pred cHHHHHHh
Confidence 44555543
No 252
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=20.40 E-value=79 Score=18.83 Aligned_cols=17 Identities=12% Similarity=0.341 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHcCCeee
Q psy18055 74 DVTKACERFEQLGVEFV 90 (95)
Q Consensus 74 d~~~~~~~l~~~G~~~~ 90 (95)
.+.+|++.++++|+++.
T Consensus 50 e~~~W~~e~k~~gi~v~ 66 (175)
T COG2179 50 ELRAWLAELKEAGIKVV 66 (175)
T ss_pred HHHHHHHHHHhcCCEEE
Confidence 48889999999998764
No 253
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=20.33 E-value=1.2e+02 Score=16.51 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=18.6
Q ss_pred EEEECCchhcHHHhhhccCCEEee
Q psy18055 5 MYRIKDPRKSLPFYTKVLGMSLLK 28 (95)
Q Consensus 5 ~l~v~d~~~s~~FY~~~lg~~~~~ 28 (95)
-|.=+|.+.|.+||.+.=|.+...
T Consensus 58 LikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 58 LIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEECCHHHHHHHHHHhCCCccCC
Confidence 356678999999999888866543
No 254
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=20.26 E-value=88 Score=16.62 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHcCCe
Q psy18055 73 PDVTKACERFEQLGVE 88 (95)
Q Consensus 73 ~d~~~~~~~l~~~G~~ 88 (95)
+++..+.++|+++|.+
T Consensus 74 ~~v~~~~~~Lk~~GA~ 89 (100)
T TIGR03455 74 KVVNELIDKLKAAGAR 89 (100)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4699999999999985
Done!