RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18055
(95 letters)
>2za0_A Glyoxalase I; lyase, lactoylglutathione lyase, methyl- gerfelin;
HET: MGI; 1.70A {Mus musculus} PDB: 1qip_A* 1fro_A*
1qin_A* 1bh5_A*
Length = 184
Score = 122 bits (308), Expect = 3e-37
Identities = 74/124 (59%), Positives = 86/124 (69%), Gaps = 29/124 (23%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMG----------------- 43
+QQTM RIKDP+KSL FYT+VLG++LL+KLDFPAMKFSLYF+
Sbjct: 32 LQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAW 91
Query: 44 ------------NWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVK 91
NWGTE DE +YHNGNSDPRGFGHIGI VPDV AC+RFE+LGV+FVK
Sbjct: 92 TFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 151
Query: 92 KPND 95
KP+D
Sbjct: 152 KPDD 155
>1f9z_A Glyoxalase I; beta-alpha-beta-BETA-beta motif, protein-NI(II)
complex, homodimer, lyase; 1.50A {Escherichia coli}
SCOP: d.32.1.1 PDB: 1fa5_A 1fa6_A 1fa7_A 1fa8_A
Length = 135
Score = 115 bits (291), Expect = 3e-35
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMG--NWGTEKDEDLTYHNG 58
+ TM R+ D ++S+ FYTKVLGM LL+ + P K+SL F+G E +LTY+ G
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 59 NSD---PRGFGHIGIQVPDVTKACERFEQLGVEFVKKP 93
+GHI + V + +ACE+ Q G ++
Sbjct: 63 VDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREA 100
>2c21_A Trypanothione-dependent glyoxalase I; lyase,
glutathionylspermidine, methylglyoxal, detoxification;
2.0A {Leishmania major} SCOP: d.32.1.1
Length = 144
Score = 114 bits (287), Expect = 1e-34
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDE--DLTYHNG 58
M TM R+ D +S+ FYT+ LGM +L+K D P K++L F+G +LTY+ G
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYG 68
Query: 59 NSD---PRGFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
+ +GHI I V DV + + V +
Sbjct: 69 VTSYKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYEDES 108
>3l7t_A SMU.1112C, putative uncharacterized protein; metal binding protein;
1.80A {Streptococcus mutans}
Length = 134
Score = 85.6 bits (212), Expect = 3e-23
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 12/104 (11%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFM----------GNWGTEKD--E 51
+ D KS FY LG ++++ P + GN T+ +
Sbjct: 9 VALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDIELEIFGNKLTDSNYCA 68
Query: 52 DLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
+ + G H+ V DV + + LG+ + D
Sbjct: 69 PPERISWPREACGLRHLAFYVEDVEASRQELIALGIRVEEVRYD 112
Score = 23.9 bits (52), Expect = 8.6
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 63 RGFGHIGIQVPDVTKACERF--EQLGVEFVKK 92
+ H+ + V D K+ F QLG E +++
Sbjct: 4 KAVHHVALIVSDYDKSY-EFYVNQLGFEVIRE 34
>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2,
protein struct initiative, midwest center for structural
genomics, oxidore; 1.70A {Enterococcus faecalis}
Length = 126
Score = 71.7 bits (176), Expect = 6e-18
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 4/96 (4%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGT----EKDEDLTYHNGN 59
+ + + FY + LG +L++ P + +
Sbjct: 9 VAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISDQFPARPSY 68
Query: 60 SDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
+ G H+ +V + + + G+E D
Sbjct: 69 PEALGLRHLAFKVEHIEEVIAFLNEQGIETEPLRVD 104
>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW
YORK structural genomi research consortium, putative
glyoxalase I; 1.76A {Methanosarcina mazei}
Length = 144
Score = 70.6 bits (173), Expect = 2e-17
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 7/97 (7%)
Query: 1 MQQTMYRI--KDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNG 58
+ Q + R+ D +L FY ++L + + + P L + +
Sbjct: 5 ILQILSRLYVADLNPALEFYEELLETPVAMRFEIPQTGVELAQISTI-----LLIAGSEE 59
Query: 59 NSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
P V + K E+ G E ++ P+
Sbjct: 60 ALKPFRNTQATFLVDSLDKFKTFLEENGAEIIRGPSK 96
>3rmu_A Methylmalonyl-COA epimerase, mitochondrial; structural genomics
consortium, SGC, vitamin B12, mitochondr isomerase; HET:
PG4; 1.80A {Homo sapiens}
Length = 134
Score = 68.6 bits (168), Expect = 1e-16
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNS 60
+ + D K+ FY +LG + + + P S+ F+ G K E L +S
Sbjct: 6 LNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNL-GNTKMELLHPLGLDS 64
Query: 61 DPR---------GFGHIGIQVPDVTKACERFEQLGVEFVKKP 93
G HI I+V ++ A ++ + + +
Sbjct: 65 PIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEE 106
>3oa4_A Glyoxalase, BH1468 protein; structural genomics, protein structure
initiative, glyoxalas PSI-biology, lyase; 1.94A
{Bacillus halodurans}
Length = 161
Score = 66.8 bits (163), Expect = 1e-15
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNS 60
+ + + LPFY L + LL D P+ + F+ G K E L + S
Sbjct: 9 LDHIGIAVTSIKDVLPFYVGSLKLKLLGMEDLPSQGVKIAFLEI-GESKIELLEPLSEES 67
Query: 61 DPRGF--------GHIGIQVPDVTKACERFEQLGVEFV 90
F HI I V + + + ++ GV+ +
Sbjct: 68 PIAKFIQKRGEGIHHIAIGVKSIEERIQEVKENGVQMI 105
>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2,
structural GENOMIC,NYSGXRC., structural genomics; 2.06A
{Clostridium acetobutylicum} PDB: 2qh0_A
Length = 133
Score = 57.8 bits (140), Expect = 2e-12
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 14/101 (13%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMG----------NWGTEKDEDL 53
Y +K+ +L + ++ + + + K + F+ G + +
Sbjct: 11 IGYAVKNIDSALKKFKRLGYVEESEVVRDEVRKVYIQFVINGGYRVELVAPDGEDSPINK 70
Query: 54 TYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKPN 94
T G HI +V D+ K+ E Q+G KK
Sbjct: 71 TIKKG----STPYHICYEVEDIQKSIEEMSQIGYTLFKKAE 107
Score = 28.2 bits (63), Expect = 0.25
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 67 HIGIQVPDVTKACERFEQLG 86
HIG V ++ A ++F++LG
Sbjct: 10 HIGYAVKNIDSALKKFKRLG 29
>3e5d_A Putative glyoxalase I; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, lyase; 2.70A {Listeria monocytogenes str}
Length = 127
Score = 57.3 bits (138), Expect = 3e-12
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 9/98 (9%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPR 63
+ + FY G + + F+ YF+ ++ +
Sbjct: 7 VALWTTNLEQMKQFYVTYFGATANDLYENKTKGFNSYFLSFED-GARLEIMSRTDVTGKT 65
Query: 64 -----GFGHIGIQVP---DVTKACERFEQLGVEFVKKP 93
G+ HI I V + E+ Q G +P
Sbjct: 66 TGENLGWAHIAISTGTKEAVDELTEKLRQDGFAIAGEP 103
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance
protein/dioxygenase; metal ION binding, NYSGXRC, PSI2,
structural genomics; 1.90A {Nostoc punctiforme pcc
73102}
Length = 156
Score = 56.8 bits (137), Expect = 8e-12
Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 15/107 (14%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSL---YFMGNWGTEKDEDLTYH---- 56
++D + S FY +LG+ L + PA L + N+ T L
Sbjct: 23 IALNVQDMQASRYFYGTILGLHELTDDEVPATLTELVASGKVANFITPDGTILDLFGEPE 82
Query: 57 ------NGNSDPRGFGHIGIQVPD--VTKACERFEQLGVEFVKKPND 95
N H+ + +A + + P
Sbjct: 83 LSPPDPNPEKTFTRAYHLAFDIDPQLFDRAVTVIGENKIAIAHGPVT 129
>2qqz_A Glyoxalase family protein, putative; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 1.92A {Bacillus anthracis str}
Length = 126
Score = 51.4 bits (123), Expect = 4e-10
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 10/94 (10%)
Query: 3 QTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNG---N 59
Q + ++ FY + +GM + K + + +F K + H G N
Sbjct: 15 QVAAPVGCEEEARAFYGETIGMEEIPKPEELKKRGGCWF-------KCGNQEIHIGVEQN 67
Query: 60 SDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKP 93
+P H V + + + + G+E +
Sbjct: 68 FNPAKRAHPAFYVLKIDEFKQELIKQGIEVIDDH 101
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural
genomics, PSI-biology, midwest center for structu
genomics, MCSG; 1.73A {Catenulispora acidiphila}
Length = 155
Score = 51.7 bits (123), Expect = 6e-10
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 10/102 (9%)
Query: 3 QTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWG---------TEKDEDL 53
T + D K+ FYT LG + + A ++ +
Sbjct: 29 LTNVFVDDQAKAESFYTGKLGFLVKADVPVGADRWLTVVSPEAPDGTQLLLEPSSHAAVT 88
Query: 54 TYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
+ G V D+ ER LGV F ++P D
Sbjct: 89 PFKEALV-ADGIPAASFAVDDIAAEYERLSALGVRFTQEPTD 129
>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc;
2.51A {Agrobacterium tumefaciens}
Length = 160
Score = 50.9 bits (122), Expect = 1e-09
Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 13/100 (13%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKK-------LDFPAMKFSLYFMGNWGTEKDEDLTYH 56
T D + FY V G+ ++ K L+ +
Sbjct: 12 TALYADDLDAAEAFYRDVFGLEMVLKLPGQLVFFKCGRQMLLLFDPQESSRADANNPIPR 71
Query: 57 NGNSDPRGFGHIGIQVP---DVTKACERFEQLGVEFVKKP 93
+G G GH +V + RFE L +
Sbjct: 72 HG---AVGQGHFCFYADDKAEVDEWKTRFEALEIPVEHYH 108
>1twu_A Hypothetical protein YYCE; structural genomics, protein structure
initiative, MCSG, DUP of the alpha-beta sandwichs.
bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP:
d.32.1.8
Length = 139
Score = 49.5 bits (118), Expect = 3e-09
Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFG 66
+ + FY + L + + + + G + + T + G S
Sbjct: 18 PTGQLDEIIRFYEEGLCLKRIGEFSQHN-GYDGVMFGLPHADYHLEFTQYEGGSTAPVPH 76
Query: 67 HIGIQV------PDVTKACERFEQLGVEFVKKPN 94
+ V ++ + + +G + V+ N
Sbjct: 77 PDSLLVFYVPNAVELAAITSKLKHMGYQEVESEN 110
>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygena; 11002Z,
glyoxylase, dioxygenas PSI-II; 2.04A {Frankia SP}
Length = 136
Score = 47.4 bits (113), Expect = 2e-08
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 16/92 (17%)
Query: 9 KDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPR----- 63
+D S +YT++L L + F+ + + +
Sbjct: 14 RDLDISCRWYTEILDWKELVRGRGDTTSFAHGVLPG-----GLSIVLREHDGGGTDLFDE 68
Query: 64 ---GFGHIGIQVP---DVTKACERFEQLGVEF 89
G H+ V D+ ER + G F
Sbjct: 69 TRPGLDHLSFSVESMTDLDVLEERLAKAGAAF 100
Score = 23.9 bits (52), Expect = 8.4
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 63 RGFGHIGIQVPDVTKACERF--EQLGVEFVKKPND 95
G H+ + V D+ R+ E L + + +
Sbjct: 4 SGVSHVSLTVRDL-DISCRWYTEILDWKELVRGRG 37
>2qnt_A AGR_C_3434P, uncharacterized protein ATU1872; glyoxalase/bleomycin
resistance protein/dioxygenase family R protein, PSI-2,
MCSG; HET: MSE EPE; 1.40A {Agrobacterium tumefaciens
str}
Length = 141
Score = 46.4 bits (110), Expect = 5e-08
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNS 60
+ ++D +S FY LG+ +L+ DF + E+ + +
Sbjct: 9 FVNPIPFVRDINRSKSFYRDRLGLKILE--DFGSFVLFETGFAIHEGRSLEETIWRTSSD 66
Query: 61 DPRGFG----HIGIQVPDVTKACERFEQLGVEFVKKPND 95
+G + + DV A + VE +
Sbjct: 67 AQEAYGRRNMLLYFEHADVDAAFQDIAP-HVELIHPLER 104
>2rk9_A Glyoxalase/bleomycin resistance protein/dioxygena; NYSGXRC,
structural genomics, protein structur initiative II;
1.60A {Vibrio splendidus}
Length = 145
Score = 46.2 bits (109), Expect = 7e-08
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 8/95 (8%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWG----TEKDEDLTYHNGNSD- 61
D S F+ VLG + + P +F + + + +G+ +
Sbjct: 12 YCFDINVSQSFFVDVLGFEVKY--ERPDEEFVYLTLDGVDVMLEGIAGKSRKWLSGDLEF 69
Query: 62 PRGFG-HIGIQVPDVTKACERFEQLGVEFVKKPND 95
P G G + V D+ +R + + + +
Sbjct: 70 PLGSGVNFQWDVIDIEPLYQRVNESAADSIYLALE 104
>1npb_A Fosfomycin-resistance protein; manganese binding, potassium
binding loop, transferase; 2.50A {Serratia marcescens}
SCOP: d.32.1.2
Length = 141
Score = 45.2 bits (107), Expect = 1e-07
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPR 63
+ D +KS+ F+ ++LG++L + + + G+ D
Sbjct: 8 LTLAVSDLQKSVTFWHELLGLTLHARWN----TGAYLTCGDLWVCLSYDEARQYVPPQES 63
Query: 64 GFGHIGIQVP--DVTKACERFEQLGVEFVKKPND 95
+ H V D +R EQ GV K+
Sbjct: 64 DYTHYAFTVAEEDFEPLSQRLEQAGVTIWKQNKS 97
>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygena; structural
genomics, PSI-2, PROT structure initiative; 1.82A
{Burkholderia phytofirmans}
Length = 141
Score = 45.3 bits (107), Expect = 1e-07
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 6/93 (6%)
Query: 9 KDPRKSLPFYTKVLGMSLLKKLD---FPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
+D FY +V G ++ + F + +G E E + +
Sbjct: 17 RDIVAMSAFYQQVFGFQEIESIRSPIFRGLDTGKSCIGFNAHEAYELMQLAQFSETSGIK 76
Query: 66 GHIGIQVP---DVTKACERFEQLGVEFVKKPND 95
+ V V K G +K P +
Sbjct: 77 FLLNFDVDTKEAVDKLVPVAIAAGATLIKAPYE 109
>3m2o_A Glyoxalase/bleomycin resistance protein; unknown function,
structural genomics, putative glyoxylase/B resistance
protein; HET: PG4; 1.35A {Rhodopseudomonas palustris}
PDB: 3vcx_A*
Length = 164
Score = 44.5 bits (105), Expect = 3e-07
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 1/93 (1%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPR 63
+ D + FY + G L + D+ S D + +
Sbjct: 29 PVIMTSDVAATAAFYCQHFGFRPLFEADWYVHLQSAEDPAVNLAILDGQHSTIPAAGRGQ 88
Query: 64 GFG-HIGIQVPDVTKACERFEQLGVEFVKKPND 95
G + +V D + R +Q G+ + D
Sbjct: 89 VSGLILNFEVDDPDREYARLQQAGLPILLTLRD 121
>2pjs_A AGR_C_3564P, uncharacterized protein ATU1953;
glyoxalase/bleomycin resistance protein/dioxygenase
superfamily, structural genomics; 1.85A {Agrobacterium
tumefaciens str} SCOP: d.32.1.2
Length = 119
Score = 43.6 bits (103), Expect = 3e-07
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFG 66
+P ++ FY +LGM + + S E +++
Sbjct: 14 ATPEPARAQAFYGDILGMPVAMDHGWIVTHAS-------PLEAHAQVSFAREGGSGTDVP 66
Query: 67 HIGIQVPDVTKACERFEQLGVEFVKKPND 95
+ I+V + + R + G+ P
Sbjct: 67 DLSIEVDNFDEVHARILKAGLPIEYGPVT 95
>3ghj_A Putative integron gene cassette protein; integron cassette protein,
mobIle metagenome, structural genomics, PSI-2; 1.47A
{Uncultured bacterium}
Length = 141
Score = 43.8 bits (104), Expect = 4e-07
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPR 63
++K+ KS FYT++LG A +++ ++ + +
Sbjct: 32 VAVKVKNLEKSSQFYTEILGFEAGLL--DSARRWNFLWVSG-----RAGMVVLQEEKENW 84
Query: 64 GFGHIGIQV--PDVTKACERFEQLGVEF 89
H +V ++ + E GV
Sbjct: 85 QQQHFSFRVEKSEIEPLKKALESKGVSV 112
>1zsw_A Metallo protein, glyoxalase family protein; hypothetical protein
from glyoxalase family, structural GENO PSI, protein
structure initiative; 1.65A {Bacillus cereus} SCOP:
d.32.1.10 d.32.1.10
Length = 338
Score = 43.9 bits (103), Expect = 1e-06
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKK---LDFPAMKFSLYFM--GNWGTEKDEDLTY----- 55
K+ ++ FY VLG+ +K D P+M Y G+ GT +L++
Sbjct: 36 MVTKNANENNHFYKNVLGLRRVKMTVNQDDPSMYHLFYGDKTGSPGT----ELSFFEIPL 91
Query: 56 -HNGNSDPRGFGHIGIQVPD---VTKACERFEQLGVEF 89
IG+ VP + ERFE+ V+
Sbjct: 92 VGRTYRGTNAITRIGLLVPSEDSLHYWKERFEKFDVKH 129
Score = 33.8 bits (77), Expect = 0.003
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
++ K T++ G + + + D F +G + L
Sbjct: 186 LTVRRLDKMASTLTEIFGYTEVSRND-QEAIFQSIKGEAFGEIVVKYLDGPTEKPGRGSI 244
Query: 66 GHIGIQVPD---VTKACERFEQLGV 87
H+ I+V + + E+ +Q G
Sbjct: 245 HHLAIRVKNDAELAYWEEQVKQRGF 269
>3itw_A Protein TIOX; bleomycin resistance fold, bisintercalator,
solvent-exposed residue, thiocoraline, protein binding,
peptide binding Pro; 2.15A {Micromonospora SP}
Length = 137
Score = 42.9 bits (101), Expect = 1e-06
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPA--MKFSLYFMGNWGTEKDEDLTYHNGNSDPRG 64
DP +++ + +V G LL + L G + Y +
Sbjct: 9 AYTDPDRAVDWLVRVFGFRLLLRQPAIGTIRHADLDTGGGIVMVRRTGEPYTVSCAGGHT 68
Query: 65 FGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
+ + V DV + R G + V+ D
Sbjct: 69 CKQVIVWVSDVDEHFMRSTAAGADIVQPLQD 99
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Length = 135
Score = 42.8 bits (100), Expect = 1e-06
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFG 66
+D ++ FY LG L + + +L F G+ D + PR FG
Sbjct: 16 PARDLDEAYDFYVTKLGCKLAR---RYPDRITLDFFGDQLVCHLSDRWDREVSMYPRHFG 72
Query: 67 HIGIQVPDVTKACERFEQLGVEFVKKP 93
+ +Q G+ F
Sbjct: 73 ITFRDKKHFDNLYKLAKQRGIPFYHDL 99
>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target
13955A1BCT15P1, dioxygenase, PSI-2, protein structure
initiative; 1.50A {Salmonella enterica subsp} PDB:
3hnq_A
Length = 152
Score = 42.7 bits (100), Expect = 1e-06
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 1/87 (1%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFG 66
+ D ++ FY +VLG S + +++ + P
Sbjct: 30 TVSDISTTIRFYEEVLGFSAVTF-KQNRKALIFGAQKINLHQQEMEFEPKASRPTPGSAD 88
Query: 67 HIGIQVPDVTKACERFEQLGVEFVKKP 93
I + Q G+ V+ P
Sbjct: 89 LCFITSTPINDVVSEILQAGISIVEGP 115
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron
cassette protein mobIle metagenome structural genomics,
oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae}
PDB: 3ey8_A*
Length = 133
Score = 42.6 bits (100), Expect = 1e-06
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGT--EKDEDLTYHNGNSDPRG 64
+ D + FY KVLGM + F A + +L F + + N
Sbjct: 17 TVADIPTTTNFYEKVLGMKA---VSFGAGRIALEFGHQKINLHQLGNEFEPKAQNVRVGS 73
Query: 65 FGHIGIQVPDVTKACERFEQLGVEFVKKP 93
I ++ A + E GV ++ P
Sbjct: 74 ADLCFITDTVLSDAMKHVEDQGVTIMEGP 102
>2i7r_A Conserved domain protein; structural genomics conserved domain,
PSI-2, protein structure initiative; 2.20A
{Streptococcus pneumoniae} SCOP: d.32.1.2
Length = 118
Score = 42.1 bits (99), Expect = 1e-06
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 14/91 (15%)
Query: 9 KDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHI 68
+ + +L K D+ F+ + +G L + P
Sbjct: 14 SNVPQVCADLEHILDK----KADYANDGFAQFTIG------SHCLMLSQNHLVPLENFQS 63
Query: 69 G----IQVPDVTKACERFEQLGVEFVKKPND 95
G I+V DV + +R +LG++ + P
Sbjct: 64 GIIIHIEVEDVDQNYKRLNELGIKVLHGPTV 94
>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural
GEN midwest center for structural genomics, MCSG; HET:
P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2
Length = 113
Score = 42.0 bits (99), Expect = 2e-06
Identities = 13/96 (13%), Positives = 22/96 (22%), Gaps = 12/96 (12%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPR 63
+ D + F K G++ LT G
Sbjct: 7 LNLTVADVVAAREFLEKYFGLTCSGTRGNA--------FAVMRDNDGFILTLMKGKEVQY 58
Query: 64 G-FGHIGIQVPD---VTKACERFEQLGVEFVKKPND 95
H+G V K +R ++ G +
Sbjct: 59 PKTFHVGFPQESEEQVDKINQRLKEDGFLVEPPKHA 94
Score = 24.3 bits (53), Expect = 6.4
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 64 GFGHIGIQVPDVTKACERFEQ-LGVEFVKKPND 95
G H+ + V DV A E E+ G+ +
Sbjct: 3 GIKHLNLTVADVVAAREFLEKYFGLTCSGTRGN 35
>1nki_A Probable fosfomycin resistance protein; potassium binding loop,
manganese binding, transferase; 0.95A {Pseudomonas
aeruginosa} SCOP: d.32.1.2 PDB: 1lqo_A 1lqk_A 1lqp_A
1nnr_A
Length = 135
Score = 42.1 bits (99), Expect = 2e-06
Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 21/100 (21%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKK------LDFPAMKFSLYFMGNWGTEKDEDLTYHN 57
+ D S+ FY +LG L + L+ ++ L +G
Sbjct: 8 LTLAVADLPASIAFYRDLLGFRLEARWDQGAYLELGSLWLCLSREPQYGGPA-------- 59
Query: 58 GNSDPRGFGHIGIQVP--DVTKACERFEQLGVEFVKKPND 95
+ H + D + + GV K+
Sbjct: 60 -----ADYTHYAFGIAAADFARFAAQLRAHGVREWKQNRS 94
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin
resistance, PSI-2, NYSGXRC, structural genomics; 2.58A
{Bdellovibrio bacteriovorus HD100}
Length = 128
Score = 41.9 bits (98), Expect = 2e-06
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 11/99 (11%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKF---SLYFMGNWGTEKDEDLTYHN 57
+ + L FY +++G F A K S + + N
Sbjct: 7 ITSITINTSHLQGMLGFY-RIIG------FQFTASKVDKGSEVHRAVHNGVEFSLYSIQN 59
Query: 58 GNSDPRGFGHIGIQVPDVTKACERFEQL-GVEFVKKPND 95
+G Q+ D+ K + ++ G + P D
Sbjct: 60 PQRSQIPSLQLGFQITDLEKTVQELVKIPGAMCILDPTD 98
>3pkv_A Toxoflavin lyase (TFLA); metalloenzyme, vicinal oxygen chelate
superfamily; 1.34A {Paenibacillus polymyxa} PDB: 3pkw_A
3pkx_A* 3oul_A 3oum_A*
Length = 252
Score = 42.7 bits (100), Expect = 3e-06
Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 19/102 (18%)
Query: 1 MQQTMYRI-------KDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDL 53
Q M I + + L FYT +LG + + + +
Sbjct: 20 FQGHMTSIKQLTLYTAELDRMLAFYTNMLGAQHVHEQA-----DAFTIQLGVSQ-----I 69
Query: 54 TYHNGNSDPRGFGHIGIQVPD--VTKACERFEQLGVEFVKKP 93
+ + F HI I + + G +
Sbjct: 70 QFRAAADGTKPFYHIAINIAANHFQEGKAWLSGFGELLTEND 111
>2p7o_A Glyoxalase family protein; fosfomycin resistance protein, Mn
binding, antibiotic resist metal binding protein,
hydrolase; 1.44A {Listeria monocytogenes} PDB: 2p7k_A
2p7l_A 2p7m_A 2p7p_A 2p7q_A
Length = 133
Score = 41.3 bits (97), Expect = 4e-06
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 4/90 (4%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPR 63
+KD K+ F + + FSL + + R
Sbjct: 8 ITLIVKDLNKTTAFLQNIFNAEEIYSSGDKT--FSLSKEKFFLIAGLWICIMEGDSLQER 65
Query: 64 GFGHIGIQVP--DVTKACERFEQLGVEFVK 91
+ HI Q+ +V + ER + LGVE
Sbjct: 66 TYNHIAFQIQSEEVDEYTERIKALGVEMKP 95
>3bqx_A Glyoxalase-related enzyme; VOC superfamily, PSI-2, STRU genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; 1.40A {Fulvimarina pelagi}
Length = 150
Score = 41.5 bits (97), Expect = 4e-06
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 9 KDPRKSLPFYTKVLGMSLLKKLD-FPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGH 67
D S FY + G + + + + + + + W + ++ S P
Sbjct: 14 GDLEASARFYGEGFGWAPVFRNPEIIFYQMNGFVLATWLVQNLQEDVGVAVTSRPGSM-A 72
Query: 68 IGIQVP---DVTKACERFEQLGVEFVKKPND 95
+ V +V ER G + ++ +
Sbjct: 73 LAHNVRAETEVAPLMERLVAAGGQLLRPADA 103
>3zw5_A Glyoxalase domain-containing protein 5; lyase; 1.60A {Homo sapiens}
Length = 147
Score = 41.2 bits (96), Expect = 6e-06
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGT--EKDEDLTYHNGNSDPRG 64
+K + + FY+K+LGM + + F + +L F E ++ + P
Sbjct: 34 TVKSIKDTTMFYSKILGM---EVMTFKEDRKALCFGDQKFNLHEVGKEFEPKAAHPVPGS 90
Query: 65 FGHIGIQVPDVTKACERFEQLGVEFVKKP 93
I + + + + V + P
Sbjct: 91 LDICLITEVPLEEMIQHLKACDVPIEEGP 119
Score = 24.2 bits (52), Expect = 6.2
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 52 DLTYHNGNSDP---RGFGHIGIQVPDVTKACERFEQ-LGVEFVKKPND 95
DL N R HI + V + + + LG+E + D
Sbjct: 12 DLGTENLYFQSMLIRRLDHIVMTVKSIKDTTMFYSKILGMEVMTFKED 59
>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1,
glyoxalase/bleomycin resis protein/dioxygenase
superfamily, structural genomics; HET: UNL; 2.10A
{Bacillus halodurans c-125}
Length = 146
Score = 40.6 bits (95), Expect = 7e-06
Identities = 12/89 (13%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 13 KSLPFYTKVLGMSLLKKLDFPAMKFSL-----YFMGNWGTEKDEDLTYHNGNSDPRGFGH 67
+S+ F+ +LG + + S Y + ++ + T+H + G H
Sbjct: 33 ESIAFWDWLLGELGYEDYQSWSRGKSYKHGKTYLVFVQTEDRFQTPTFHRKRT---GLNH 89
Query: 68 IGIQVPD---VTKACERFEQLGVEFVKKP 93
+ V + ++ ++ G + +
Sbjct: 90 LAFHAASREKVDELTQKLKERGDPILYED 118
Score = 26.8 bits (59), Expect = 0.97
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 56 HNGNSDPRG-FGHIGIQVPDVTKA 78
H+ N +G H+ I V + ++
Sbjct: 11 HHENLYFQGMLHHVEINVDHLEES 34
>1ss4_A Glyoxalase family protein; structural genomics, PSI, prote
structure initiative, midwest center for structural
genomic unknown function; HET: CIT GSH; 1.84A {Bacillus
cereus} SCOP: d.32.1.6
Length = 153
Score = 40.6 bits (95), Expect = 8e-06
Identities = 13/113 (11%), Positives = 35/113 (30%), Gaps = 22/113 (19%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLD-----------FPAMKFSLYFMG-NWGTEKDE 51
++ ++ F+ + +G++L + + + + M G + E
Sbjct: 15 VSIVVESLDNAISFFEE-IGLNLEGRANVEGEWAGRVTGLGSQCVEIAMMVTPDGHSRIE 73
Query: 52 DLTYHNGNSDPR---------GFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
+ + G+ + V D+ + R + G E V +
Sbjct: 74 LSRFLTPPTIADHRTAPVNALGYLRVMFTVEDIDEMVSRLTKHGAELVGEVVQ 126
Score = 32.5 bits (74), Expect = 0.009
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 63 RGFGHIGIQVPDVTKACERFEQLGVEFVKK 92
++ I V + A FE++G+ +
Sbjct: 10 LRMDNVSIVVESLDNAISFFEEIGLNLEGR 39
>1r9c_A Glutathione transferase; fosfomycin resistance protein, Mn
binding, antibiotic resist transferase; 1.83A
{Mesorhizobium loti} SCOP: d.32.1.2
Length = 139
Score = 40.3 bits (94), Expect = 9e-06
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFS--LYFMGNWGTEKDEDLTYHNGNSD 61
+ ++D + V + D S +F+ D + G
Sbjct: 8 MTFIVRDLERMTRILEGVFDAREVYASDTEQFSLSREKFFLIG-----DIWVAIMQGEKL 62
Query: 62 P-RGFGHIGIQVP--DVTKACERFEQLGVEFVK 91
R + HI ++ D + ER +LG++
Sbjct: 63 AERSYNHIAFKIDDADFDRYAERVGKLGLDMRP 95
>3oaj_A Putative ring-cleaving dioxygenase MHQO; structural genomics,
protein structure initiative, PSI-biolo unknown
function; 1.40A {Bacillus subtilis subsp}
Length = 335
Score = 41.2 bits (96), Expect = 1e-05
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKK---LDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDP 62
+ P+++ FY VLG+ L+K+ D P LYF G + +
Sbjct: 14 AIVGHPQENTDFYAGVLGLRLVKQTVNFDDPGTYH-LYFGNEGGKPGTIITFFPWAGARQ 72
Query: 63 R-----GFGHIGIQVPDVTK--ACERFEQLGVEFVK 91
G VP +R E+ V + K
Sbjct: 73 GVIGDGQVGVTSYVVPKGAMAFWEKRLEKFNVPYTK 108
Score = 30.5 bits (68), Expect = 0.057
Identities = 12/87 (13%), Positives = 21/87 (24%), Gaps = 7/87 (8%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKD-EDLTYHNGNSDPRG 64
+ P K+ ++G+ + K G+ G D + G
Sbjct: 159 LLSEQPDKTADLLENIMGLERVGKEG---DFVRYRSAGDIGNVIDLKLTPIGRGQMGAGT 215
Query: 65 FGHIGIQVPD---VTKACERFEQLGVE 88
HI + D G
Sbjct: 216 VHHIAWRANDDEDQLDWQRYIASHGYG 242
>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics,
PSI protein structure initiative; NMR {Agrobacterium
tumefaciens}
Length = 144
Score = 40.4 bits (94), Expect = 1e-05
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFG 66
+ +P S FY +LG+ ++ ++ T S G G
Sbjct: 32 YVDNPPASTQFYKALLGVDPVESSPTFSL---FVLANGMKLGLWSRHTVEPKASVTGGGG 88
Query: 67 HIGIQVPD---VTKACERFEQLGVEFVKKPND 95
+ +V + V + ++ GV +++P
Sbjct: 89 ELAFRVENDAQVDETFAGWKASGVAMLQQPAK 120
>3uh9_A Metallothiol transferase FOSB 2; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta fold, cytosol; HET: MSE; 1.60A {Bacillus
anthracis}
Length = 145
Score = 40.2 bits (94), Expect = 1e-05
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
+ + + KS+ FY K+L LL K A G W E+ N + +
Sbjct: 10 FSVSNLEKSIEFYQKILQAKLLVKGRKLA---YFDLNGLWIALNVEEDIPRNEI--KQSY 64
Query: 66 GHIGIQVP--DVTKACERFEQLGVEFVKKPND 95
H+ V + E Q V +
Sbjct: 65 THMAFTVTNEALDHLKEVLIQNDVNILPGRER 96
>2r6u_A Uncharacterized protein; structural genomics, PSI-2, RHA04853,
MCSG, protein structur initiative, midwest center for
structural genomics; 1.50A {Rhodococcus SP}
Length = 148
Score = 40.3 bits (94), Expect = 1e-05
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 9 KDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMG--NWGTEKDEDLTYHNGNSDPRGFG 66
D ++ FY G ++ + P M +S+ G DE + G
Sbjct: 34 DDGDRARAFYRDAFGWAI---AEIPDMDYSMVTTGPVGESGMPDEPGYINGGMMQRGEVT 90
Query: 67 H--IGIQVPDVTKACERFEQLGVEFVKKPND 95
+ + V + A ER E LG + V
Sbjct: 91 TPVVTVDVESIESALERIESLGGKTVTGRTP 121
>3gm5_A Lactoylglutathione lyase and related lyases;
sheet-helix-sheet-sheet-sheet motif, isomerase; HET:
CIT; 2.00A {Thermoanaerobacter tengcongensis}
Length = 159
Score = 39.5 bits (92), Expect = 3e-05
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 9 KDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYF-------------MGNWGTEKDEDLTY 55
+D +SL Y + G+ + + G + E +
Sbjct: 28 RDIEESLQNYAEFFGVEKPQWFWTDDYSKAHTKFNGRPTKARAKLAFFELGPLQLELIEP 87
Query: 56 HNGNSDPR--------GFGHIGIQVPDVTKACERFEQLGVEFVKKP 93
S R G HI V D+ + E + G++ ++K
Sbjct: 88 DENPSTWREFLDKNGEGIHHIAFVVKDMDRKVEELYRKGMKVIQKG 133
Score = 30.6 bits (69), Expect = 0.036
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 63 RGFGHIGIQVPDVTKACERFEQ-LGVE 88
R IGI V D+ ++ + + + GVE
Sbjct: 18 RNTVQIGIVVRDIEESLQNYAEFFGVE 44
>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}
Length = 148
Score = 39.3 bits (91), Expect = 3e-05
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 6/90 (6%)
Query: 9 KDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHI 68
K+P KS FY +L ++ AM G +
Sbjct: 15 KNPAKSEEFYKNLLDTQPIESSPTFAM---FVMKTGLRLGLWAQEEIEPKAHQTGGGMEL 71
Query: 69 GIQVPD---VTKACERFEQLGVEFVKKPND 95
QV V + ++ + ++ P
Sbjct: 72 SFQVNSNEMVDEIHRQWSDKEISIIQPPTQ 101
>3bt3_A Glyoxalase-related enzyme, ARAC type; VOC superfamily, PSI-2,
NYSGXRC, structural genomics, prote structure
initiative; 2.50A {Clostridium phytofermentans}
Length = 148
Score = 38.5 bits (89), Expect = 5e-05
Identities = 11/96 (11%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 5 MYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDE-----DLTYHNGN 59
+Y KD K++ ++ ++LG S + ++ +E +H
Sbjct: 26 VYFTKDMDKTVKWFEEILGWSGDIVARDDEGFGDYGCVFDYPSEVAVAHLTPFRGFHLFK 85
Query: 60 SDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
+P + + + + ++ G + +
Sbjct: 86 GEPIKGVAGFMMIEGIDALHKYVKENGWDQISDIYT 121
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET:
GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Length = 132
Score = 37.7 bits (87), Expect = 8e-05
Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 11/95 (11%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFG 66
+ + +S FY + + F ++ + ++ F
Sbjct: 20 YVSNVERSTDFYRFIFKK----EPVFVTPRYVAFPSSG-DALFAIWSGGEEPVAEIPRFS 74
Query: 67 HIGIQVPDVTKACERFEQL------GVEFVKKPND 95
IGI +P + F + + +K+P
Sbjct: 75 EIGIMLPTGEDVDKLFNEWTKQKSHQIIVIKEPYT 109
>1mpy_A Catechol 2,3-dioxygenase; extradiol dioxygenase, non heme iron
dioxygenase, metapyrocatechase, oxidoreductase; 2.80A
{Pseudomonas putida} SCOP: d.32.1.3 d.32.1.3
Length = 307
Score = 38.3 bits (89), Expect = 9e-05
Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 9 KDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHI 68
+ + +TKVLG L +++ F+ + K D+ + + + H+
Sbjct: 159 DELPATYDLFTKVLGFYLAEQVLDENGTRVAQFLS--LSTKAHDVAFIHH-PEKGRLHHV 215
Query: 69 GIQVP---DVTKACERFEQLGVE 88
+ D+ +A +
Sbjct: 216 SFHLETWEDLLRAADLISMTDTS 238
Score = 34.4 bits (79), Expect = 0.002
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
R+ D K+L Y ++LG+ + + D + +Y + + + +D G
Sbjct: 13 LRVLDMSKALEHYVELLGLIEMDRDD----QGRVYLK---AWTEVDKFSLVLREADEPGM 65
Query: 66 GHIGIQVP---DVTKACERFEQLGVEFVKKP 93
+G +V + + G + P
Sbjct: 66 DFMGFKVVDEDALRQLERDLMAYGCAVEQLP 96
Score = 24.8 bits (54), Expect = 5.2
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 66 GHIGIQVPDVTKACERF--EQLGVEFVKKPND 95
GH+ ++V D+ E LG+ + + +
Sbjct: 9 GHVQLRVLDM-SKALEHYVELLGLIEMDRDDQ 39
Score = 24.4 bits (53), Expect = 8.2
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 3/27 (11%)
Query: 62 PRGFGHIGIQVPDVTKACERF--EQLG 86
F H + ++ A + LG
Sbjct: 148 AVRFDHALMYGDEL-PATYDLFTKVLG 173
>1jc4_A Methylmalonyl-COA epimerase; vicinal oxygen chelate superfamily,
isomerase; 2.00A {Propionibacterium freudenreichiisubsp}
SCOP: d.32.1.4 PDB: 1jc5_A
Length = 148
Score = 37.3 bits (86), Expect = 1e-04
Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 15/107 (14%)
Query: 2 QQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMK-----FSLYFMGNWGTEKDEDLTYH 56
Y D ++ +Y + G L + + P + + + +
Sbjct: 11 DHVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAPL 70
Query: 57 NGNSDPRGF----------GHIGIQVPDVTKACERFEQLGVEFVKKP 93
N S + H+ +V D+ + GV+ +
Sbjct: 71 NDESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDE 117
>3oxh_A RV0577 protein; kinase regulation, antibiotic resistance,
mycobacterium tube structural genomics, PSI, protein
structure initiative; HET: PMB XYL; 1.75A {Mycobacterium
tuberculosis}
Length = 282
Score = 37.2 bits (86), Expect = 2e-04
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
Query: 9 KDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHI 68
P +L FY V+G++ + + G + + H+
Sbjct: 173 DKPDLALAFYEAVVGLTHSSMEIAAGQNYRVLKAG----DAEVGGCMEPPMPGVPNHWHV 228
Query: 69 GIQVPDVTKACERFEQLGVEFVKKPND 95
V D + G + + +P D
Sbjct: 229 YFAVDDADATAAKAAAAGGQVIAEPAD 255
Score = 29.9 bits (67), Expect = 0.097
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 4/88 (4%)
Query: 10 DPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGH-- 67
D + FYT + G + +Y M E + +
Sbjct: 42 DQSAAKKFYTSLFGWGY--DDNPVPGGGGVYSMATLNGEAVAAIAPMPPGAPEGMPPIWN 99
Query: 68 IGIQVPDVTKACERFEQLGVEFVKKPND 95
I V DV ++ G + + D
Sbjct: 100 TYIAVDDVDAVVDKVVPGGGQVMMPAFD 127
>1lgt_A Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxygenase,
2,3-dihydroxybiphenyl, non-heme iron, anaerobic, PCB
biodegradation; HET: BP3; 1.70A {Burkholderia
xenovorans} SCOP: d.32.1.3 d.32.1.3 PDB: 1kmy_A* 1knd_A
1knf_A 1han_A* 1lkd_A*
Length = 297
Score = 34.9 bits (80), Expect = 0.002
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSL---LKKLDFPAMKFSLYFMGNWGTEKDEDLTYHN 57
+ + + D K+L FYT VLG L + P + YF+ E+ L
Sbjct: 143 LGHFVRCVPDSDKALAFYTDVLGFQLSDVIDMKMGPDVTVPAYFLH--CNERHHTLAIAA 200
Query: 58 GNSDPRGFGHIGIQVP---DVTKACERFEQLGV 87
P+ H ++V DV A +R + G+
Sbjct: 201 FPL-PKRIHHFMLEVASLDDVGFAFDRVDADGL 232
Score = 31.8 bits (72), Expect = 0.019
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 13/88 (14%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
+ + D F T+ LG+ D F + + G D
Sbjct: 10 FAVSDVAAWRSFLTQKLGLMEAGTTD-----NGDLF---RIDSRAWRIAVQQGEVD--DL 59
Query: 66 GHIGIQVP---DVTKACERFEQLGVEFV 90
G +V + + ++ +Q G+
Sbjct: 60 AFAGYEVADAAGLAQMADKLKQAGIAVT 87
Score = 24.8 bits (54), Expect = 4.5
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 63 RGFGHIGIQVPDVTKACERF 82
R G++G V DV A F
Sbjct: 3 RSLGYMGFAVSDV-AAWRSF 21
>3eck_A Protein (homoprotocatechuate 2,3-dioxygenase); oxidoreductase,
extradiol, FEII, crystal packing; HET: XXG; 1.60A
{Brevibacterium fuscum} SCOP: d.32.1.3 d.32.1.3 PDB:
3ecj_A* 3ojn_A* 1q0o_A 1q0c_A 2iga_A* 2ig9_A 3ojj_A*
3bza_A* 3ojk_A* 3ojt_A*
Length = 365
Score = 34.3 bits (78), Expect = 0.003
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
+ D KS FY VLG+ + + + +Y E+
Sbjct: 23 LVVTDLAKSRNFYVDVLGLHVSYEDE-----NQIYLR---SFEEFIHHNLVLTKGPVAAL 74
Query: 66 GHIGIQVP---DVTKACERFEQLGVEFVKKP 93
+ +V DV KA +++LG ++
Sbjct: 75 KAMAFRVRTPEDVDKAEAYYQELGCRTERRK 105
Score = 26.9 bits (59), Expect = 1.0
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 62 PRGFGHIGIQVPDVTKACERFEQLG 86
H PDV + + E LG
Sbjct: 150 LVRLDHFNQVTPDVPRGRKYLEDLG 174
Score = 25.4 bits (55), Expect = 3.5
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 61 DPRGFGHIGIQVPDVTKACERF--EQLGVEFVKKPND 95
D + + V D+ F + LG+ + +
Sbjct: 14 DILRCAYAELVVTDL-AKSRNFYVDVLGLHVSYEDEN 49
>3b59_A Glyoxalase/bleomycin resistance protein/dioxygena; 11004Z,
NYSGXRC, PSI-2, structural genomics, Pro structure
initiative; 2.53A {Novosphingobium aromaticivorans}
Length = 310
Score = 33.3 bits (76), Expect = 0.005
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 11/87 (12%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
Y +KD FY V G+ + + + +F DE +D
Sbjct: 14 YGVKDFDAEKAFYADVWGLEPVGEDA-----NNAWFK---AQGADEHHVVQLRRADENRI 65
Query: 66 GHIGIQVPD---VTKACERFEQLGVEF 89
I + V E G +
Sbjct: 66 DVIALAADSRSDVDALRASVEAAGCKV 92
Score = 31.8 bits (72), Expect = 0.019
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 13/83 (15%)
Query: 9 KDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHI 68
+ + + F+T VLG + L F+ + G P H+
Sbjct: 150 PNHQDMVKFFTDVLGFKVSDWLGDFM-----CFLR--CNSAHHRIAILPG---PPCLNHV 199
Query: 69 GIQVP---DVTKACERFEQLGVE 88
+ D+ + R + G++
Sbjct: 200 AYDMLSVDDMMRGAHRLKVKGID 222
Score = 29.8 bits (67), Expect = 0.077
Identities = 6/40 (15%), Positives = 9/40 (22%)
Query: 45 WGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQ 84
K P HI + P+ + F
Sbjct: 122 SDVAKGAKRDLARWEGVPVKISHIVLHSPNHQDMVKFFTD 161
Score = 24.5 bits (53), Expect = 7.3
Identities = 5/20 (25%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 63 RGFGHIGIQVPDVTKACERF 82
++G V D A + F
Sbjct: 7 TEIRYVGYGVKDF-DAEKAF 25
>3hpy_A Catechol 2,3-dioxygenase; repeated motifs, aromatic hydrocarbons
catabolism, iron, oxidoreductase; 1.94A {Pseudomonas SP}
PDB: 3hpv_A 3hq0_A*
Length = 309
Score = 33.3 bits (76), Expect = 0.005
Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 5 MYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFS-LYFMGNWGTEKDEDLTYHNGNSDPR 63
+ + + +T+VLG L++++ P ++ + K D+ + +
Sbjct: 156 LLYGPNIAEVQKIFTEVLGFYLVERVLSPDGDSDMGIWLS--CSHKVHDIAFVEYPEKGK 213
Query: 64 GFGHIGIQVP---DVTKACERFEQLGVE 88
H + V +A + V
Sbjct: 214 -LHHCSFLLESWEQVLRAGDIMSMNEVN 240
Score = 31.7 bits (72), Expect = 0.021
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 10/87 (11%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
R+ + + + FY VLG+ + D + +YF W D G
Sbjct: 14 VRVLNLEEGIHFYRNVLGLVETGRDD----QGRVYFKC-WDERDHSCYIIREA--DTAGI 66
Query: 66 GHIGIQVP---DVTKACERFEQLGVEF 89
G +V + K + G+
Sbjct: 67 DFFGFKVLDKATLEKLDADLQAYGLTT 93
Score = 26.0 bits (57), Expect = 2.2
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 62 PRGFGHIGIQVPDVTKACERFEQ-LG 86
P H + P++ + + F + LG
Sbjct: 149 PIQLDHCLLYGPNIAEVQKIFTEVLG 174
Score = 24.4 bits (53), Expect = 7.8
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 63 RGFGHIGIQVPDVTKACERF--EQLGVEFVKKPND 95
GH ++V ++ + F LG+ + +
Sbjct: 7 LRPGHAQVRVLNL-EEGIHFYRNVLGLVETGRDDQ 40
>3lm4_A Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein structure
initiative, 2hydroxyl 6 OXO 6 phenyl hexa 2-4 dienoic
acid, peroxide; HET: HPX; 1.80A {Rhodococcus jostii}
Length = 339
Score = 33.4 bits (76), Expect = 0.005
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
P+++L F+TK LGM + + S+Y G E + + G
Sbjct: 17 LFSPKPQETLDFFTKFLGMYVTHREG-----QSVYLR---GYEDPYPWSLKITEAPEAGM 68
Query: 66 GHIGIQVP---DVTKACERFEQLGVEFVKKPND 95
GH ++ + + + V+ +
Sbjct: 69 GHAAMRTSSPEALERRAKSLTDGNVDGTWSEDQ 101
Score = 30.7 bits (69), Expect = 0.046
Identities = 9/92 (9%), Positives = 24/92 (26%), Gaps = 7/92 (7%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNS 60
+ D + + LG +++ ++ +M ++ +
Sbjct: 154 IDHLNLMSSDVTAVKDSFERHLGFRTTERVVDGNVEI-GAWMS--SNLLGHEVACMRDMT 210
Query: 61 DPRG-FGHIGIQVP---DVTKACERFEQLGVE 88
G H+ A E F ++
Sbjct: 211 GGHGKLHHLAFFYGTGQHNIDAVEMFRDYDIQ 242
Score = 24.2 bits (52), Expect = 7.7
Identities = 4/32 (12%), Positives = 9/32 (28%), Gaps = 3/32 (9%)
Query: 66 GHIGIQVPDVTKACERF--EQLGVEFVKKPND 95
+ P + F + LG+ +
Sbjct: 13 ARAELFSPKP-QETLDFFTKFLGMYVTHREGQ 43
Score = 24.2 bits (52), Expect = 9.8
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 55 YHNGNSDPRGFGHIGIQVPDVTKACERFEQ-LG 86
+ H+ + DVT + FE+ LG
Sbjct: 144 KPLQGIPVKRIDHLNLMSSDVTAVKDSFERHLG 176
>1xy7_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G48480, reductively methylated protein, CATH
3.10.180 fold; 1.80A {Arabidopsis thaliana} SCOP:
d.32.1.9 PDB: 2q48_A
Length = 166
Score = 32.7 bits (74), Expect = 0.008
Identities = 14/102 (13%), Positives = 24/102 (23%), Gaps = 11/102 (10%)
Query: 5 MYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKF----------SLYFMGNWGTEKDEDLT 54
+ + ++ FY G +P K L G+ D
Sbjct: 31 LVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSL 90
Query: 55 YHNGNSDPRGFG-HIGIQVPDVTKACERFEQLGVEFVKKPND 95
+ G G + D A + G V+
Sbjct: 91 PGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEA 132
>2zyq_A Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; extradiol, DHSA,
TB, catechol, cholesterol, steroid, aromatic
hydrocarbons catabolism; HET: TAR; 2.00A {Mycobacterium
tuberculosis} PDB: 2zi8_A*
Length = 300
Score = 32.3 bits (73), Expect = 0.012
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 12/87 (13%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
D + KVLGM K + +LY + L G +
Sbjct: 11 IEATDMAAWREYGLKVLGMVEGKGAP----EGALYLR---MDDFPARLVVVPG--EHDRL 61
Query: 66 GHIGIQVPD---VTKACERFEQLGVEF 89
G + + + + R + G +
Sbjct: 62 LEAGWECANAEGLQEIRNRLDLEGTPY 88
Score = 31.1 bits (70), Expect = 0.032
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSL--LKKLDFPAMKFSLYFMGNWGTEKDEDLTYHN- 57
M + +D ++L FY VLG L +L + W + +H+
Sbjct: 143 MGHVVLSTRDDAEALHFYRDVLGFRLRDSMRLPPQMVGRPADGPPAWLRFFGCNPRHHSL 202
Query: 58 ---GNSDPRGFGHIGIQVP---DVTKACERFEQLGVE 88
G H+ ++V DV +R + V
Sbjct: 203 AFLPMPTSSGIVHLMVEVEQADDVGLCLDRALRRKVP 239
Score = 24.9 bits (54), Expect = 5.4
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 63 RGFGHIGIQVPDVTKACERF--EQLGVEFVKKPND 95
R G++ I+ D+ A + + LG+ K +
Sbjct: 4 RSLGYLRIEATDM-AAWREYGLKVLGMVEGKGAPE 37
>1xrk_A Bleomycin resistance protein; arm exchange, ligand binding
protein, thermostable mutant, antibiotic inhibitor;
HET: BLM; 1.50A {Streptoalloteichus hindustanus} SCOP:
d.32.1.2 PDB: 2zhp_A* 1byl_A
Length = 124
Score = 31.4 bits (71), Expect = 0.014
Identities = 9/91 (9%), Positives = 28/91 (30%), Gaps = 17/91 (18%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDED----LTYHNGNSDP 62
+D +++ F+T LG S ++ ++ +D ++ P
Sbjct: 12 TARDVAEAVEFWTDRLGFSR------------VFVEDDFAGVVRDDVTLFISAVQDQVVP 59
Query: 63 RGFGHIGIQVPDVTKACERFEQLGVEFVKKP 93
+ V + + + ++ +
Sbjct: 60 DNT-QAWVWVRGLDELYAEWSEVVSTNFRDA 89
>1f1u_A Homoprotocatechuate 2,3-dioxygenase; extradiol, manganese,
biodegradation, aromatic, oxidoreductase; 1.50A
{Arthrobacter globiformis} SCOP: d.32.1.3 d.32.1.3 PDB:
1f1r_A 1f1v_A* 1f1x_A
Length = 323
Score = 31.9 bits (72), Expect = 0.019
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
+ D KS FY VLG+ + ++ + ++Y E+
Sbjct: 23 IVVTDLAKSREFYVDVLGLHVTEEDE-----NTIYLR---SLEEFIHHNLVLRQGPIAAV 74
Query: 66 GHIGIQVP---DVTKACERFEQLGVEFVKKP 93
+V +V A +++LG ++
Sbjct: 75 AAFAYRVKSPAEVDAAEAYYKELGCRTERRK 105
Score = 28.8 bits (64), Expect = 0.21
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 62 PRGFGHIGIQVPDVTKACERFEQLG 86
H PDV + E LG
Sbjct: 150 LVRLDHFNQVTPDVPRGRAYLEDLG 174
Score = 25.3 bits (55), Expect = 3.2
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 60 SDPRGFGHIGIQVPDVTKACERF--EQLGVEFVKKPND 95
D ++ I V D+ F + LG+ ++ +
Sbjct: 13 PDIVRCAYMEIVVTDL-AKSREFYVDVLGLHVTEEDEN 49
>1kw3_B 2,3-dihydroxybiphenyl dioxygenase; four TIME repetitions of the
beta-alpha-beta-BETA-beta motif oxidoreductase; 1.45A
{Pseudomonas SP} SCOP: d.32.1.3 d.32.1.3 PDB: 1dhy_A
1eiq_A 1eir_A* 1eil_A 1kw6_B* 1kw8_B* 1kw9_B* 1kwb_B
1kwc_B*
Length = 292
Score = 31.9 bits (72), Expect = 0.019
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSL---LKKLDFPAMKFSLYFMGNWGTEKDEDLTYHN 57
+ + + D K++ FYT+VLG L + P +F+ + +
Sbjct: 143 IGHFVRCVPDTAKAMAFYTEVLGFVLSDIIDIQMGPETSVPAHFLHC--NGRHHTIALAA 200
Query: 58 GNSDPRGFGHIGIQVP---DVTKACERFEQLG 86
P+ H +Q DV A +R + G
Sbjct: 201 FPI-PKRIHHFMLQANTIDDVGYAFDRLDAAG 231
Score = 29.6 bits (66), Expect = 0.098
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
+ +KD F TK +G+ + + ++ + G +
Sbjct: 10 FAVKDVPAWDHFLTKSVGLMAAGSAG-----DAALYR---ADQRAWRIAVQPG--ELDDL 59
Query: 66 GHIGIQVP---DVTKACERFEQLGVEFV 90
+ G++V + + ++ Q GV F
Sbjct: 60 AYAGLEVDDAAALERMADKLRQAGVAFT 87
Score = 24.6 bits (53), Expect = 7.0
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 63 RGFGHIGIQVPDVTKACERF 82
G++G V DV A + F
Sbjct: 3 ERLGYLGFAVKDV-PAWDHF 21
>3fcd_A Lyase, ORF125EGC139; lactoylglutathione lyase, YECM, PSI2, NYSGXRC,
structural genomics, protein structure initiative; 1.92A
{Uncultured bacterium}
Length = 134
Score = 30.2 bits (68), Expect = 0.042
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 9/93 (9%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFG 66
I D +++L + LG L + A L G E+ D
Sbjct: 14 HIPDMQEALTLFCDTLGFELKYRHSNYAY-LELSGCGLRLLEEPA----RKIIPDGIARV 68
Query: 67 HIGIQVPDVTKACERF----EQLGVEFVKKPND 95
I I V D+ + E L + V+ +
Sbjct: 69 AICIDVSDIDSLHTKLSPALENLPADQVEPLKN 101
>2wl9_A Catechol 2,3-dioxygenase; aromatic hydrocarbons catabolism, iron,
oxidoreductase; 1.90A {Rhodococcus SP} PDB: 2wl3_A
Length = 305
Score = 30.0 bits (67), Expect = 0.081
Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 14/88 (15%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYF-MGNWGTEKDEDLTYHNGNSDPRG 64
+ + + ++GM ++ + +Y M
Sbjct: 12 LSVSNLDAWRDYAAGIMGMQVVDDGE----DDRIYLRMD------RWHHRIVLHADGSDD 61
Query: 65 FGHIGIQVP---DVTKACERFEQLGVEF 89
+IG +V ++ + E+ + G+ F
Sbjct: 62 LAYIGWRVAGPVELDELAEQLKNAGIPF 89
Score = 26.5 bits (58), Expect = 1.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 55 YHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFV 90
+ ++ +G GHI I+ DV +A + LG+E
Sbjct: 137 FGKFVTEGQGLGHIIIREDDVEEATRFYRLLGLEGA 172
Score = 24.2 bits (52), Expect = 8.1
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 63 RGFGHIGIQVPDVTKACERF--EQLGVEFVKKPND 95
G++G+ V ++ A + +G++ V D
Sbjct: 5 TELGYLGLSVSNL-DAWRDYAAGIMGMQVVDDGED 38
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET:
VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A*
1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A
1pjj_A*
Length = 271
Score = 29.8 bits (68), Expect = 0.081
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 17/73 (23%)
Query: 22 LGMS---LLKKLDFPAMK---FSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDV 75
L M L LD P K ++ F D L Y D R FG + D
Sbjct: 73 LRMEGKYRLATLDAPREKHDHLTMKF-------ADGQLIYA----DVRKFGTWELISTDQ 121
Query: 76 TKACERFEQLGVE 88
+++G E
Sbjct: 122 VLPYFLKKKIGPE 134
>2ehz_A 1,2-dihydroxynaphthalene dioxygenase; extradiol dioxygenase,
protein substrate complex, oxidoreduc; 1.35A
{Pseudomonas SP} PDB: 2ei0_A* 2ei1_A* 2ei3_A* 2ei2_A
Length = 302
Score = 29.2 bits (65), Expect = 0.18
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYF-MGNWGTEKDEDLTYHNGNSDPRG 64
+KDP F T +LG+ +L + + K Y M ++
Sbjct: 15 ISVKDPDAWKSFATDMLGLQVLDEGE----KDRFYLRMD------YWHHRIVVHHNGQDD 64
Query: 65 FGHIGIQVP---DVTKACERFEQLGVEF 89
++G +V + ++ G +
Sbjct: 65 LEYLGWRVAGKPEFEALGQKLIDAGYKI 92
Score = 26.5 bits (58), Expect = 1.2
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 55 YHNGNSDPRGFGHIGIQVPDVTKACERFEQLG 86
+ + +G GH ++ DV +A + + LG
Sbjct: 140 HGKFVTGDQGLGHCIVRQTDVAEAHKFYSLLG 171
>3e0r_A C3-degrading proteinase (CPPA protein); MCSG, PSI, SAD,
structural GE protein structure initiative; 2.30A
{Streptococcus pneumoniae}
Length = 244
Score = 28.8 bits (64), Expect = 0.22
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLK 28
+ + + + FY + LGM L
Sbjct: 16 LKANNRKLNETFYIETLGMKALL 38
>1cjx_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase, iron; 2.40A
{Pseudomonas fluorescens} SCOP: d.32.1.3 d.32.1.3
Length = 357
Score = 28.9 bits (64), Expect = 0.23
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 64 GFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
G H+ D+ K + +++G+ F+ P D
Sbjct: 237 GIQHVAFLTDDLVKTWDALKKIGMRFMTAPPD 268
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 28.3 bits (64), Expect = 0.28
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 13/40 (32%)
Query: 64 GFGHIGIQVPDVTKAC-------------ERFEQLGVEFV 90
GFG IG +V + A E+ E++ + V
Sbjct: 149 GFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAV 188
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair,
sequence context; HET: DNA 08Q; 1.60A {Geobacillus
stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A*
3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A*
2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A*
3sar_A* 3sav_A* ...
Length = 273
Score = 27.9 bits (63), Expect = 0.36
Identities = 13/73 (17%), Positives = 19/73 (26%), Gaps = 16/73 (21%)
Query: 22 LGMS---LLKKLDFPAMK---FSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDV 75
L M + P F +L Y D R FG + + +
Sbjct: 74 LRMEGRYAVASALEPLEPHTHVVFCF------TDGSELRYR----DVRKFGTMHVYAKEE 123
Query: 76 TKACERFEQLGVE 88
+LG E
Sbjct: 124 ADRRPPLAELGPE 136
>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron,
oxidoreductase; HET: NTD; 2.50A {Streptomyces
avermitilis} SCOP: d.32.1.3 d.32.1.3
Length = 381
Score = 27.9 bits (61), Expect = 0.44
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 47 TEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
++ DE L ++ G G HI + D+ + GV+F+ P+
Sbjct: 254 SQIDEYLEFYGG----AGVQHIALNTGDIVETVRTMRAAGVQFLDTPDS 298
>1qto_A Bleomycin-binding protein; arm-exchange, antibiotic inhibitor;
1.50A {Streptomyces verticillus} SCOP: d.32.1.2 PDB:
1jie_A* 1jif_A
Length = 122
Score = 27.1 bits (60), Expect = 0.52
Identities = 9/88 (10%), Positives = 21/88 (23%), Gaps = 15/88 (17%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLT---YHNGNSDPR 63
D ++ F+ LG + ++ + D+ +
Sbjct: 12 TAVDVPANVSFWVDTLGFEK------------DFGDRDFAGVRRGDIRLHISRTEHQIVA 59
Query: 64 GFGHIGIQVPDVTKACERFEQLGVEFVK 91
I+V D E + +
Sbjct: 60 DNTSAWIEVTDPDALHEEWARAVSTDYA 87
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 26.8 bits (60), Expect = 0.91
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 14/42 (33%)
Query: 64 GFGHIGIQVPDVTKAC--------------ERFEQLGVEFVK 91
G G IG + K E ++ G +FV+
Sbjct: 171 GAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVE 212
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 26.7 bits (60), Expect = 0.96
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 13/40 (32%)
Query: 64 GFGHIGIQVPDVTKA-------------CERFEQLGVEFV 90
GFG IG QV + A ER +++ +FV
Sbjct: 149 GFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFV 188
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 26.9 bits (60), Expect = 0.96
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 13/40 (32%)
Query: 64 GFGHIGIQVPDVTKA-------------CERFEQLGVEFV 90
G G IG V A R QLG+E +
Sbjct: 149 GLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELL 188
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting,
protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP:
a.4.5.54 a.4.5.54
Length = 566
Score = 26.9 bits (58), Expect = 0.99
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 63 RGFGHIGIQVPDVTKACERFEQLGVEFVK 91
G I ++ +ACERFE LG+ +K
Sbjct: 448 MRIGTGLISPMEMREACERFEHLGLNELK 476
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 26.8 bits (60), Expect = 1.1
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 13/40 (32%)
Query: 64 GFGHIGIQVPDVTKAC-------------ERFEQLGVEFV 90
G G IG +V ++ E GV+ +
Sbjct: 172 GLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQL 211
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 26.4 bits (59), Expect = 1.3
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 10/37 (27%)
Query: 64 GFGHIGIQVPDVTKAC----------ERFEQLGVEFV 90
G+G+IG QV ++ ++ ++ + V+
Sbjct: 163 GYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPA 199
>3p8a_A Uncharacterized protein; mainly antiparallel beta sheets, alpha
and beta protein, UNK function; HET: MSE BTB PG4; 1.95A
{Staphylococcus aureus}
Length = 274
Score = 26.7 bits (58), Expect = 1.3
Identities = 4/33 (12%), Positives = 11/33 (33%)
Query: 56 HNGNSDPRGFGHIGIQVPDVTKACERFEQLGVE 88
G+ F HI + + + + + +
Sbjct: 16 PRGSHMILKFDHIIHYIDQLDRFSFPGDVIKLH 48
>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding
protein, bleomycin A2, antimicrobial protein; HET: BLM;
1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB:
2a4w_A* 1kmz_A 1kll_A*
Length = 138
Score = 26.0 bits (57), Expect = 1.7
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 65 FGHIGIQVPDVTKACERF-EQLGVEFVKKPND 95
+ V D+ K+ F +LGVE + +
Sbjct: 5 ISLFAVVVEDMAKS-LEFYRKLGVEIPAEADS 35
>1luc_B Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio
harveyi} SCOP: c.1.16.1 PDB: 1brl_B 1bsl_A 1xkj_A
3fgc_B*
Length = 324
Score = 26.2 bits (58), Expect = 1.7
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 35 MKFSLYFMGNWGTEKDEDLTYHN 57
MKF L+F+ +++ D
Sbjct: 1 MKFGLFFLNFMNSKRSSDQVIEE 23
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 26.1 bits (58), Expect = 1.7
Identities = 9/40 (22%), Positives = 11/40 (27%), Gaps = 13/40 (32%)
Query: 64 GFGHIGIQVPDVTKA-------------CERFEQLGVEFV 90
G+G IG V +A ER G
Sbjct: 167 GYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVA 206
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal,
trafficking, protein complex, transport protein; 3.60A
{Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Length = 169
Score = 25.7 bits (56), Expect = 2.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 63 RGFGHIGIQVPDVTKACERFEQLGVEFVK 91
G I ++ +ACERFE LG+ +K
Sbjct: 53 MRIGTGLISPMEMREACERFEHLGLNELK 81
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns
helix, riken STR genomics/proteomics initiative, RSGI,
structural genomics; 1.90A {Thermus thermophilus} SCOP:
a.156.1.2 b.113.1.1 g.39.1.8
Length = 266
Score = 25.5 bits (57), Expect = 2.4
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 50 DEDLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVE 88
L +H DPR FG + + +LG E
Sbjct: 90 GRTLYFH----DPRRFGRLFGVRRGDYREIPLLLRLGPE 124
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 25.7 bits (57), Expect = 2.5
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 15/43 (34%)
Query: 64 GFGHIGIQV---------------PDVTKACERFEQLGVEFVK 91
G G IG +V + E++G V+
Sbjct: 171 GAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVE 213
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 25.3 bits (56), Expect = 2.6
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 71 QVPDVTKACERFEQLG 86
Q+ D+ AC + L
Sbjct: 104 QMQDIITACHALKSLA 119
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 25.7 bits (57), Expect = 2.8
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 10/37 (27%)
Query: 64 GFGHIGIQVPDVTKAC----------ERFEQLGVEFV 90
G G +G ++ +V + + + EFV
Sbjct: 123 GAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEFV 159
>1sqd_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 1.80A
{Arabidopsis thaliana} SCOP: d.32.1.3 d.32.1.3 PDB:
1tfz_A* 1tg5_A* 1sp9_A
Length = 424
Score = 25.3 bits (54), Expect = 3.4
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 56 HNGNSDP---RGFGHIGIQVPDVTKACERFEQ-LGVEFVKKPN 94
N SD + F HI D T RF LG+ F K +
Sbjct: 14 KNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSD 56
>1luc_A Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio
harveyi} SCOP: c.1.16.1 PDB: 1brl_A 3fgc_A*
Length = 355
Score = 24.7 bits (54), Expect = 5.2
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 35 MKFSLYFMGNWGTEKDEDLTYHN 57
MKF + + E +
Sbjct: 1 MKFGNFLLTYQPPELSQTEVMKR 23
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 24.8 bits (55), Expect = 5.2
Identities = 5/40 (12%), Positives = 10/40 (25%), Gaps = 13/40 (32%)
Query: 64 GFGHIGIQVPDVTKAC-------------ERFEQLGVEFV 90
G G IG + ++L ++
Sbjct: 153 GMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYM 192
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Length = 394
Score = 24.6 bits (54), Expect = 6.8
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 32 FPAMKFSLYFMGNWGTEKDEDL 53
A+K + +W T++
Sbjct: 173 IRAVKVCVPIKADWSTKEVAYY 194
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3
PDB: 1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 24.5 bits (53), Expect = 7.4
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 64 GFGHIGIQVPDVTKACERFEQLGV 87
G+G++G V + + +G+
Sbjct: 10 GYGNLGRSVEKLIAKQPDMDLVGI 33
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural
genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB:
1vdx_A 2fyh_A
Length = 184
Score = 24.0 bits (52), Expect = 9.1
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLY 40
T+ R+K + L K+ ++ F L
Sbjct: 127 TLGRVKFVKDKLGLTMKLKELANEDFGSFVVDAIELK 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.432
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,505,931
Number of extensions: 77004
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 133
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)