RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18055
(95 letters)
>d1qipa_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 176
Score = 67.3 bits (163), Expect = 4e-16
Identities = 71/124 (57%), Positives = 84/124 (67%), Gaps = 29/124 (23%)
Query: 1 MQQTMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMG----------------- 43
+QQTM R+KDP+KSL FYT+VLGM+L++K DFP MKFSLYF+
Sbjct: 24 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 83
Query: 44 ------------NWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVK 91
NWGTE DE +YHNGNSDPRGFGHIGI VPDV AC+RFE+LGV+FVK
Sbjct: 84 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 143
Query: 92 KPND 95
KP+D
Sbjct: 144 KPDD 147
>d2c21a1 d.32.1.1 (A:3-141) Glyoxalase I (lactoylglutathione lyase)
{Leishmania major [TaxId: 5664]}
Length = 139
Score = 48.9 bits (115), Expect = 2e-09
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTY-----HNG 58
TM R+ D +S+ FYT+ LGM +L+K D P K++L F+G L
Sbjct: 7 TMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYGVTS 66
Query: 59 NSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
+GHI I V DV + + V +
Sbjct: 67 YKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYEDES 103
Score = 22.7 bits (47), Expect = 9.3
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 63 RGFGHIGIQVPDVTKACERFEQL 85
R H I+V D+ ++ + + +
Sbjct: 2 RRMLHTMIRVGDLDRSIKFYTER 24
>d1twua_ d.32.1.8 (A:) Hypothetical protein YycE {Bacillus subtilis
[TaxId: 1423]}
Length = 137
Score = 48.4 bits (114), Expect = 3e-09
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 11/105 (10%)
Query: 1 MQQTMYRIKDP----RKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYH 56
Q RI P + + FY + L + + + + G + + T +
Sbjct: 6 FQAAQIRIARPTGQLDEIIRFYEEGLCLKRIGEFSQHNG-YDGVMFGLPHADYHLEFTQY 64
Query: 57 NGNSDPR---GFGHIGIQVP---DVTKACERFEQLGVEFVKKPND 95
G S + VP ++ + + +G + V+ N
Sbjct: 65 EGGSTAPVPHPDSLLVFYVPNAVELAAITSKLKHMGYQEVESENP 109
>d1f9za_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase)
{Escherichia coli [TaxId: 562]}
Length = 135
Score = 46.2 bits (108), Expect = 2e-08
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDL-----TYHNG 58
TM R+ D ++S+ FYTKVLGM LL+ + P K+SL F+G ++ + +
Sbjct: 6 TMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDK 65
Query: 59 NSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKP 93
+GHI + V + +ACE+ Q G ++
Sbjct: 66 YELGTAYGHIALSVDNAAEACEKIRQNGGNVTREA 100
>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 167
Score = 41.7 bits (97), Expect = 1e-06
Identities = 14/120 (11%), Positives = 20/120 (16%), Gaps = 28/120 (23%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYF--------------------MG 43
+ D ++ LGM K D
Sbjct: 16 IEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRFLFTAPYSPSLSA 75
Query: 44 NWGTEKDEDLTYHNGNSDPR--------GFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
+ R G + I+V D A G P
Sbjct: 76 GEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAIEVEDAESAFSISVANGAIPSSPPIV 135
Score = 31.7 bits (71), Expect = 0.006
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 57 NGNSDP---RGFGHIGIQVPDVTKACERFEQLG 86
N SD + F HI D T RF
Sbjct: 2 NPKSDKFKVKRFHHIEFWCGDATNVARRFSWGL 34
>d1r9ca_ d.32.1.2 (A:) Fosfomycin resistance protein FosX
{Mesorhizobium loti [TaxId: 381]}
Length = 130
Score = 41.1 bits (95), Expect = 2e-06
Identities = 11/90 (12%), Positives = 21/90 (23%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPR 63
+ ++D + V + D S G +
Sbjct: 8 MTFIVRDLERMTRILEGVFDAREVYASDTEQFSLSREKFFLIGDIWVAIMQGEKLAERSY 67
Query: 64 GFGHIGIQVPDVTKACERFEQLGVEFVKKP 93
I D + ER +LG++
Sbjct: 68 NHIAFKIDDADFDRYAERVGKLGLDMRPPR 97
Score = 27.2 bits (59), Expect = 0.22
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 63 RGFGHIGIQVPDVTKACERFEQ-LGVEFVKKPND 95
G H+ V D+ + E V +
Sbjct: 3 EGLSHMTFIVRDLERMTRILEGVFDAREVYASDT 36
>d1mpya2 d.32.1.3 (A:146-307) Catechol 2,3-dioxygenase
(metapyrocatechase) {Pseudomonas putida, mt2 [TaxId:
303]}
Length = 162
Score = 38.8 bits (89), Expect = 2e-05
Identities = 12/92 (13%), Positives = 24/92 (26%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPR 63
+ + + +TKVLG L +++ F+ D +H
Sbjct: 9 ALMYGDELPATYDLFTKVLGFYLAEQVLDENGTRVAQFLSLSTKAHDVAFIHHPEKGRLH 68
Query: 64 GFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
D+ +A + P
Sbjct: 69 HVSFHLETWEDLLRAADLISMTDTSIDIGPTR 100
>d1t47a1 d.32.1.3 (A:16-178) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Streptomyces avermitilis [TaxId: 33903]}
Length = 163
Score = 38.3 bits (88), Expect = 2e-05
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 15/99 (15%)
Query: 9 KDPRKSLPFYTKVLGMSLLKK--------------LDFPAMKFSLYFMGNWGTEKDEDLT 54
+ +++ +Y+ GM L+ L + +F L + T L
Sbjct: 16 GNAKQAAHYYSTAFGMQLVAYSGPENGSRETASYVLTNGSARFVLTSVIKPATPWGHFLA 75
Query: 55 YHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKP 93
H G + I+VPD A + G V +P
Sbjct: 76 DHVAEHGD-GVVDLAIEVPDARAAHAYAIEHGARSVAEP 113
Score = 27.1 bits (59), Expect = 0.31
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 61 DP---RGFGHIGIQVPDVTKACERFEQ-LGVEFV 90
DP +G + V + +A + G++ V
Sbjct: 1 DPFPVKGMDAVVFAVGNAKQAAHYYSTAFGMQLV 34
>d1sp8a1 d.32.1.3 (A:36-207) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Corn (Zea mays) [TaxId: 4577]}
Length = 172
Score = 38.3 bits (88), Expect = 2e-05
Identities = 14/114 (12%), Positives = 25/114 (21%), Gaps = 22/114 (19%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKK--------------LDFPAMKFSLYFMGNWGTEK 49
D + ++ LG L + L ++ F G +
Sbjct: 17 VELWCADAASAAGRFSFGLGAPLAARSDLSTGNSAHASLLLRSGSLSFLFTAPYAHGADA 76
Query: 50 DEDLTYHNGNSDPR--------GFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
+ R + ++V D A G P D
Sbjct: 77 ATAALPSFSAAAARRFAADHGLAVRAVALRVADAEDAFRASVAAGARPAFGPVD 130
Score = 28.7 bits (63), Expect = 0.084
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 57 NGNSDP---RGFGHIGIQVPDVTKACERFEQ 84
N SD F H+ + D A RF
Sbjct: 3 NPRSDRFHTLAFHHVELWCADAASAAGRFSF 33
>d1npba_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA)
{Serratia marcescens [TaxId: 615]}
Length = 140
Score = 37.7 bits (86), Expect = 3e-05
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPR 63
+ D +KS+ F+ ++LG+ L + G+ D
Sbjct: 8 LTLAVSDLQKSVTFWHELLGL----TLHARWNTGAYLTCGDLWVCLSYDEARQYVPPQES 63
Query: 64 GFGHIGIQVP--DVTKACERFEQLGVEFVKKP 93
+ H V D +R EQ GV K+
Sbjct: 64 DYTHYAFTVAEEDFEPLSQRLEQAGVTIWKQN 95
Score = 25.0 bits (53), Expect = 1.4
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 63 RGFGHIGIQVPDVTKACERFEQ-LGVEFVKKPND 95
+ H+ + V D+ K+ + + LG+ + N
Sbjct: 3 QSLNHLTLAVSDLQKSVTFWHELLGLTLHARWNT 36
>d1jc4a_ d.32.1.4 (A:) Methylmalonyl-CoA epimerase
{Propionibacterium shermanii [TaxId: 1752]}
Length = 145
Score = 37.7 bits (86), Expect = 4e-05
Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 15/105 (14%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMG---------------NWGTE 48
Y D ++ +Y + G L + + P M +
Sbjct: 11 VAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAPLND 70
Query: 49 KDEDLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFVKKP 93
+ + ++ G H+ +V D+ + GV+ +
Sbjct: 71 ESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDE 115
Score = 26.5 bits (57), Expect = 0.37
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 67 HIGIQVPDVTKACERFEQLGVEFVKKPND 95
H+ PD +A + +++ +
Sbjct: 10 HVAYACPDADEASKYYQETFGWHELHREE 38
>d1zswa2 d.32.1.10 (A:145-314) Hypothetical protein BC1024 {Bacillus
cereus [TaxId: 1396]}
Length = 170
Score = 37.4 bits (86), Expect = 6e-05
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 4/87 (4%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
++ K T++ G + + + D A+ +G + L
Sbjct: 18 LTVRRLDKMASTLTEIFGYTEVSRNDQEAIFQ-SIKGEAFGEIVVKYLDGPTEKPGRGSI 76
Query: 66 GHIGIQVP---DVTKACERFEQLGVEF 89
H+ I+V ++ E+ +Q G
Sbjct: 77 HHLAIRVKNDAELAYWEEQVKQRGFHS 103
Score = 25.5 bits (55), Expect = 0.95
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 63 RGFGHIGIQVPDVTKACERFEQ-LGVEFVKKP 93
+G G + + V + K + G V +
Sbjct: 11 QGMGSVELTVRRLDKMASTLTEIFGYTEVSRN 42
>d2pjsa1 d.32.1.2 (A:3-113) Uncharacterized protein Atu1953
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 111
Score = 36.5 bits (83), Expect = 6e-05
Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 7/89 (7%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFG 66
+P ++ FY +LGM + + S +++
Sbjct: 9 ATPEPARAQAFYGDILGMPVAMDHGWIVTHASPLEAHAQ-------VSFAREGGSGTDVP 61
Query: 67 HIGIQVPDVTKACERFEQLGVEFVKKPND 95
+ I+V + + R + G+ P
Sbjct: 62 DLSIEVDNFDEVHARILKAGLPIEYGPVT 90
>d1nkia_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 34.9 bits (79), Expect = 3e-04
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 5/90 (5%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPR 63
+ D S+ FY +LG L L W E + G +
Sbjct: 8 LTLAVADLPASIAFYRDLLGFRL---EARWDQGAYLELGSLWLCLSREP--QYGGPAADY 62
Query: 64 GFGHIGIQVPDVTKACERFEQLGVEFVKKP 93
GI D + + GV K+
Sbjct: 63 THYAFGIAAADFARFAAQLRAHGVREWKQN 92
Score = 24.8 bits (53), Expect = 1.5
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 63 RGFGHIGIQVPDVTKACERFEQ-LGVEFVKKPND 95
G H+ + V D+ + + LG + +
Sbjct: 3 TGLNHLTLAVADLPASIAFYRDLLGFRLEARWDQ 36
>d1xrka_ d.32.1.2 (A:) Bleomycin resistance protein, BRP
{Streptoalloteichus hindustanus [TaxId: 2017]}
Length = 120
Score = 34.6 bits (78), Expect = 5e-04
Identities = 9/85 (10%), Positives = 23/85 (27%), Gaps = 9/85 (10%)
Query: 7 RIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFG 66
+D +++ F+T LG S + D A +
Sbjct: 11 TARDVAEAVEFWTDRLGFSRVFVEDDFAGVVRDDVTLFI---------SAVQDQVVPDNT 61
Query: 67 HIGIQVPDVTKACERFEQLGVEFVK 91
+ V + + + ++ +
Sbjct: 62 QAWVWVRGLDELYAEWSEVVSTNFR 86
>d1zswa1 d.32.1.10 (A:1-144) Hypothetical protein BC1024 {Bacillus
cereus [TaxId: 1396]}
Length = 144
Score = 33.8 bits (76), Expect = 0.001
Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPA-----MKFSLYFMGNWGTE--KDEDLTYH 56
K+ ++ FY VLG+ +K F G+ GTE E
Sbjct: 10 ISMVTKNANENNHFYKNVLGLRRVKMTVNQDDPSMYHLFYGDKTGSPGTELSFFEIPLVG 69
Query: 57 NGNSDPRGFGHIGIQVPDVT---KACERFEQLGVEFVKKPN 94
IG+ VP ERFE+ V+ +
Sbjct: 70 RTYRGTNAITRIGLLVPSEDSLHYWKERFEKFDVKHSEMTT 110
Score = 23.4 bits (49), Expect = 4.6
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 63 RGFGHIGIQVPDVTKACERFEQL 85
+G HI + + + ++ +
Sbjct: 5 KGHHHISMVTKNANENNHFYKNV 27
>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Pseudomonas fluorescens [TaxId: 294]}
Length = 203
Score = 33.4 bits (76), Expect = 0.002
Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 13/96 (13%)
Query: 13 KSLPFYTKVLGMSLLKKLDFP----AMKFSLYFMGNWGTEKDEDLTYHNGNSDPR----- 63
FY K+ + D + + + G
Sbjct: 20 YWANFYEKLFNFREARYFDIKGEYTGLTSKAMSAPDGMIRIPLNEESSKGAGQIEEFLMQ 79
Query: 64 ----GFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
G H+ D+ K + +++G+ F+ P D
Sbjct: 80 FNGEGIQHVAFLTDDLVKTWDALKKIGMRFMTAPPD 115
>d1mpya1 d.32.1.3 (A:1-145) Catechol 2,3-dioxygenase
(metapyrocatechase) {Pseudomonas putida, mt2 [TaxId:
303]}
Length = 145
Score = 31.5 bits (70), Expect = 0.008
Identities = 11/92 (11%), Positives = 27/92 (29%), Gaps = 4/92 (4%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPR 63
R+ D K+L Y ++LG+ + + D + + + + +
Sbjct: 11 VQLRVLDMSKALEHYVELLGLIEMDRDDQGRVYLKAWTEVDKFS----LVLREADEPGMD 66
Query: 64 GFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
G + + + G + P
Sbjct: 67 FMGFKVVDEDALRQLERDLMAYGCAVEQLPAG 98
>d1cjxa1 d.32.1.3 (A:4-153) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Pseudomonas fluorescens [TaxId: 294]}
Length = 150
Score = 30.7 bits (69), Expect = 0.013
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 64 GFGHIGIQVPDVTKACERFEQLGVEFVKKP 93
+ +V D KA R +LG + +
Sbjct: 73 SVCGMAFRVKDSQKAYNRALELGAQPIHID 102
Score = 29.2 bits (65), Expect = 0.045
Identities = 8/33 (24%), Positives = 9/33 (27%)
Query: 63 RGFGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
GF I P FE +G V
Sbjct: 8 MGFEFIEFASPTPGTLEPIFEIMGFTKVATHRS 40
>d1t47a2 d.32.1.3 (A:179-377) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Streptomyces avermitilis [TaxId: 33903]}
Length = 199
Score = 29.5 bits (66), Expect = 0.044
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 17/100 (17%)
Query: 13 KSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGN------------- 59
+ + FY KV+G + +K+ + + + N
Sbjct: 21 EWVGFYNKVMGFTNMKEFVGDDIATEYSALMSKVVADGTLKVKFPINEPALAKKKSQIDE 80
Query: 60 --SDPRGFG--HIGIQVPDVTKACERFEQLGVEFVKKPND 95
G G HI + D+ + GV+F+ P+
Sbjct: 81 YLEFYGGAGVQHIALNTGDIVETVRTMRAAGVQFLDTPDS 120
>d1lgta1 d.32.1.3 (A:2-132) 2,3-Dihydroxybiphenyl dioxygenase
(DHBD, BPHC enzyme) {Burkholderia cepacia, formerly
Pseudomonas cepacia [TaxId: 292]}
Length = 131
Score = 28.4 bits (62), Expect = 0.074
Identities = 11/91 (12%), Positives = 23/91 (25%), Gaps = 13/91 (14%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
+ + D F T+ LG+ D +
Sbjct: 10 FAVSDVAAWRSFLTQKLGLMEAGTTDNGD----------LFRIDSRAWRIAVQQGEVDDL 59
Query: 66 GHIGIQVPD---VTKACERFEQLGVEFVKKP 93
G +V D + + ++ +Q G+
Sbjct: 60 AFAGYEVADAAGLAQMADKLKQAGIAVTTGD 90
Score = 25.7 bits (55), Expect = 0.76
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 63 RGFGHIGIQVPDVTKACERFEQL 85
R G++G V DV Q
Sbjct: 3 RSLGYMGFAVSDVAAWRSFLTQK 25
>d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Corn (Zea mays) [TaxId: 4577]}
Length = 224
Score = 28.9 bits (64), Expect = 0.076
Identities = 7/100 (7%), Positives = 22/100 (22%), Gaps = 18/100 (18%)
Query: 9 KDPRKSLPFYTKVLGMSLLKKLDFP-------AMKFSLYFMGNWGT--EKDEDLTYHNGN 59
+ + ++ G + + + + +E +
Sbjct: 18 PELAPAAAYFAGFTGFHEFAEFTTEDVGTAESGLNSMVLANNSENVLLPLNEPVHGTKRR 77
Query: 60 SDPR---------GFGHIGIQVPDVTKACERFEQLGVEFV 90
S + G H+ + DV + +
Sbjct: 78 SQIQTFLDHHGGPGVQHMALASDDVLRTLREMQARSAMGG 117
Score = 24.7 bits (53), Expect = 1.9
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 67 HIGIQVPDVTKACERFEQ-LGVEFVKK 92
HI VP++ A F G +
Sbjct: 12 HIVGNVPELAPAAAYFAGFTGFHEFAE 38
>d1kw3b1 d.32.1.3 (B:1-132) 2,3-Dihydroxybiphenyl dioxygenase
(DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}
Length = 132
Score = 26.9 bits (58), Expect = 0.26
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 13/93 (13%)
Query: 6 YRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGF 65
+ +KD F TK +G+ A+ + +
Sbjct: 10 FAVKDVPAWDHFLTKSVGLMAAGSAGDAALYRADQRAWRI----------AVQPGELDDL 59
Query: 66 GHIGIQVPD---VTKACERFEQLGVEFVKKPND 95
+ G++V D + + ++ Q GV F +
Sbjct: 60 AYAGLEVDDAAALERMADKLRQAGVAFTRGDEA 92
Score = 24.9 bits (53), Expect = 1.5
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 63 RGFGHIGIQVPDVTKACERFEQ-LGVEFVKKPN 94
G++G V DV + +G+
Sbjct: 3 ERLGYLGFAVKDVPAWDHFLTKSVGLMAAGSAG 35
>d1ss4a_ d.32.1.6 (A:) Hypothetical protein BC1747 {Bacillus
cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}
Length = 149
Score = 27.0 bits (58), Expect = 0.31
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 59 NSDPRGFGHIGIQVPDVTKACERFEQLG 86
+ ++ I V + A FE++G
Sbjct: 4 KNKLLRMDNVSIVVESLDNAISFFEEIG 31
>d1xqaa_ d.32.1.2 (A:) Hypothetical protein BC3580 {Bacillus
cereus [TaxId: 1396]}
Length = 113
Score = 26.6 bits (57), Expect = 0.31
Identities = 6/56 (10%), Positives = 13/56 (23%)
Query: 4 TMYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTEKDEDLTYHNGN 59
+ D + F K G++ K +++ Y
Sbjct: 7 LNLTVADVVAAREFLEKYFGLTCSGTRGNAFAVMRDNDGFILTLMKGKEVQYPKTF 62
Score = 24.7 bits (52), Expect = 1.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 64 GFGHIGIQVPDVTKACERFEQL 85
G H+ + V DV A E E+
Sbjct: 3 GIKHLNLTVADVVAAREFLEKY 24
>d1klla_ d.32.1.2 (A:) Mitomycin resistance protein D, MRD
{Streptomyces lavendulae [TaxId: 1914]}
Length = 128
Score = 26.2 bits (56), Expect = 0.44
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 65 FGHIGIQVPDVTKACERFEQLGVEFVKKPND 95
+ V D+ K+ E + ++GVE + +
Sbjct: 3 ISLFAVVVEDMAKSMEFYRKMGVEIPAEADS 33
>d1f1ua2 d.32.1.3 (A:148-323) Homoprotocatechuate 2,3-dioxygenase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 176
Score = 26.4 bits (57), Expect = 0.45
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 65 FGHIGIQVPDVTKACERFEQLG 86
H PDV + E LG
Sbjct: 6 LDHFNQVTPDVPRGRAYLEDLG 27
>d1xy7a_ d.32.1.9 (A:) Hypothetical protein At5g48480 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 135
Score = 25.7 bits (55), Expect = 0.80
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 5 MYRIKDPRKSLPFYTKVLGMSLLKKLDFPAMKF 37
+ + ++ FY G +P K
Sbjct: 12 LVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKL 44
>d1lucb_ c.1.16.1 (B:) Bacterial luciferase beta chain, LuxB
{Vibrio harveyi [TaxId: 669]}
Length = 320
Score = 25.7 bits (55), Expect = 0.85
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 35 MKFSLYFMGNWGTEKDEDLTYHN 57
MKF L+F+ +++ D
Sbjct: 1 MKFGLFFLNFMNSKRSSDQVIEE 23
>d1sqia1 d.32.1.3 (A:8-156) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Human (Homo sapiens) [TaxId: 9606]}
Length = 149
Score = 25.2 bits (54), Expect = 1.2
Identities = 3/23 (13%), Positives = 7/23 (30%)
Query: 64 GFGHIGIQVPDVTKACERFEQLG 86
F + V + +A +
Sbjct: 11 HFHSVTFWVGNAKQAASFYCNKM 33
>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated
protein VPS36 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 94
Score = 24.7 bits (54), Expect = 1.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 63 RGFGHIGIQVPDVTKACERFEQLGVEFVK 91
G I ++ +ACERFE LG+ +K
Sbjct: 53 MRIGTGLISPMEMREACERFEHLGLNELK 81
>d1kw3b2 d.32.1.3 (B:133-288) 2,3-Dihydroxybiphenyl dioxygenase
(DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}
Length = 156
Score = 24.7 bits (53), Expect = 1.6
Identities = 7/21 (33%), Positives = 8/21 (38%), Gaps = 1/21 (4%)
Query: 62 PRGFGHIGIQVPDVTKACERF 82
+G GH VPD F
Sbjct: 8 DQGIGHFVRCVPDT-AKAMAF 27
>d2i7ra1 d.32.1.2 (A:1-115) Hypotheical protein SP0731
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 24.4 bits (52), Expect = 2.3
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 65 FGHIGIQVPDVTKACERFEQLG 86
+ I V +V + C E +
Sbjct: 3 LNQLDIIVSNVPQVCADLEHIL 24
>d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain
b3728 [TaxId: 1663]}
Length = 393
Score = 24.6 bits (53), Expect = 2.3
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 54 TYHNGNSDPRGFGHIGIQVPDVTKACERFEQLGVEFV 90
T +DP FG + D +A + +LG +
Sbjct: 15 TVGWTGADP--FGVATRKNLDPVEAVHKLAELGAYGI 49
>d1sqda2 d.32.1.3 (A:181-410) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 230
Score = 24.3 bits (52), Expect = 2.5
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 46 GTEKDEDLTYHNGNSDPRGFGHIGIQVPDVTKACERFEQL 85
G E+ ED + + R H VP++ A
Sbjct: 4 GFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGF 43
>d1f1ua1 d.32.1.3 (A:2-147) Homoprotocatechuate 2,3-dioxygenase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 146
Score = 24.2 bits (51), Expect = 2.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 61 DPRGFGHIGIQVPDVTKACERFEQL 85
D ++ I V D+ K+ E + +
Sbjct: 13 DIVRCAYMEIVVTDLAKSREFYVDV 37
>d1leda_ b.29.1.1 (A:) Legume lectin {West-central african legume
(Griffonia simplicifolia) [TaxId: 3850]}
Length = 243
Score = 23.9 bits (51), Expect = 3.6
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 54 TYHNGNSDPRGFGHIGIQVPDVT 76
T+ N + + + HIGI V +
Sbjct: 132 TWINKDWNDPPYPHIGIDVNSIV 154
>d1hqla_ b.29.1.1 (A:) Legume lectin {Griffonia simplicifolia,
lectin I-b4 [TaxId: 3850]}
Length = 236
Score = 23.9 bits (51), Expect = 4.0
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 54 TYHNGNSDPRGFGHIGIQVPDVT 76
T+ N N + HIGI V +
Sbjct: 128 TWTNPNFPEPSYRHIGINVNSIV 150
>g1qmo.1 b.29.1.1 (A:,E:) Legume lectin {Field bean (Dolichos
lablab), Fril [TaxId: 35936]}
Length = 230
Score = 23.9 bits (51), Expect = 4.3
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 31 DFPAMKFSLYFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQV 72
+ L+ N E TY N + + HIGI V
Sbjct: 100 SYHGGFLGLFPNANSNVVAVEFDTYLNPDYGDPNYIHIGIDV 141
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia
ensiformis) [TaxId: 3823]}
Length = 237
Score = 23.4 bits (50), Expect = 5.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 54 TYHNGNSDPRGFGHIGIQV 72
TY N + + HIGI +
Sbjct: 11 TYPNTDIGDPSYPHIGIDI 29
>d1avba_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 226
Score = 23.1 bits (49), Expect = 6.1
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 40 YFMGNWGTEKDEDLTYHNGNSDPRGFGHIGIQVPDVT 76
++G + T + + I I V +
Sbjct: 101 RYLGLFNTTNYDRDAHTVAVVFDTVSNRIEIDVNSIR 137
>d1u6la_ d.32.1.7 (A:) Hypothetical protein PA1353 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 137
Score = 22.8 bits (48), Expect = 8.9
Identities = 12/100 (12%), Positives = 22/100 (22%), Gaps = 14/100 (14%)
Query: 10 DPRKSLPFYTKVLGMSLLKKLDFPAMKFSLYFMGNWGTE--------KDEDLTYHNGNSD 61
+ R++ Y + LG +L L F +W + L + +
Sbjct: 13 NCREAFSCYHQHLGGTLEAMLPFGDSPECGDIPADWKDKIMHARLVVGSFALMASDNHPA 72
Query: 62 PRGFGHIGI------QVPDVTKACERFEQLGVEFVKKPND 95
G G + G
Sbjct: 73 YPYEGIKGCSISLNVDSKAEAERLFNALAEGGSVQMPLGP 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.432
Gapped
Lambda K H
0.267 0.0514 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,927
Number of extensions: 16048
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 62
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)