Query psy18056
Match_columns 114
No_of_seqs 100 out of 134
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 21:22:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07946 DUF1682: Protein of u 99.9 2.1E-23 4.5E-28 168.8 12.1 97 4-101 224-321 (321)
2 KOG2357|consensus 99.9 4E-22 8.6E-27 166.7 11.5 106 6-112 335-440 (440)
3 PRK10455 periplasmic protein; 87.5 9.6 0.00021 28.5 9.4 81 28-108 53-156 (161)
4 PF07278 DUF1441: Protein of u 66.9 22 0.00047 26.7 5.7 40 4-43 90-134 (152)
5 PF07813 LTXXQ: LTXXQ motif fa 53.8 56 0.0012 20.9 5.5 19 74-92 80-98 (100)
6 KOG4364|consensus 52.4 88 0.0019 29.1 7.9 18 62-79 284-301 (811)
7 PF11208 DUF2992: Protein of u 50.7 95 0.0021 22.6 6.6 19 4-27 31-49 (132)
8 KOG0163|consensus 47.9 2.2E+02 0.0048 27.4 9.8 10 70-79 953-962 (1259)
9 KOG1029|consensus 44.2 1.4E+02 0.003 28.6 8.0 18 72-90 376-393 (1118)
10 PRK12750 cpxP periplasmic repr 39.9 1.6E+02 0.0035 22.1 9.3 26 28-53 49-74 (170)
11 PF13939 TisB_toxin: Toxin Tis 38.9 43 0.00092 18.3 2.4 17 13-29 10-26 (28)
12 PF11460 DUF3007: Protein of u 34.5 1.2E+02 0.0026 21.5 4.8 12 81-92 89-100 (104)
13 KOG2002|consensus 33.8 4.5E+02 0.0098 25.5 10.2 6 31-36 802-807 (1018)
14 CHL00102 rps20 ribosomal prote 28.9 1.3E+02 0.0028 20.7 4.2 37 4-41 46-85 (93)
15 PF12757 DUF3812: Protein of u 28.1 1.8E+02 0.004 20.7 5.1 27 24-50 74-103 (126)
16 PRK09174 F0F1 ATP synthase sub 27.6 2.8E+02 0.0062 21.2 7.4 35 26-62 69-103 (204)
17 PF04644 Motilin_ghrelin: Moti 26.7 54 0.0012 18.1 1.6 20 82-102 5-24 (28)
18 PF04006 Mpp10: Mpp10 protein; 26.0 45 0.00097 29.7 1.9 26 11-36 466-491 (600)
19 PRK06569 F0F1 ATP synthase sub 22.6 3.3E+02 0.0073 20.3 7.6 33 28-62 28-60 (155)
20 KOG2600|consensus 21.7 67 0.0014 29.0 2.1 23 12-34 451-473 (596)
21 PHA02679 ORF091 IMV membrane p 21.5 54 0.0012 20.7 1.1 27 11-37 3-29 (53)
No 1
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=99.90 E-value=2.1e-23 Score=168.78 Aligned_cols=97 Identities=46% Similarity=0.737 Sum_probs=92.1
Q ss_pred CCccc-hhHhhHHHHHHHHHHHHHHhhcccCHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHhhccC
Q psy18056 4 LSIQD-TIDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEE 82 (114)
Q Consensus 4 ~~~~~-~~~~~~~ll~~~~~liD~l~~~~l~~E~~~K~~k~R~~~~~~~~K~~~~~rqE~~q~kkeekkk~erer~~~~l 82 (114)
++.++ + +.+.|||.+||+|||.|++++|+||++.|++++|+++.+++.|.+|++++|++|.++++++++++++++++|
T Consensus 224 p~~~~~~-~~~~~l~~~v~~l~D~~~~~~l~~e~~~K~~k~R~~~~~~~~K~~~~~r~E~~~~~k~e~kr~e~~~~~~~l 302 (321)
T PF07946_consen 224 PSSSDDM-EALEPLLKLVFYLIDKLARFKLSPEAKKKAKKNREEEEEKILKEAHQERQEEAQEKKEEKKREERERKLSKL 302 (321)
T ss_pred CCCcccH-HHHHHHHHHHHHHHHHhheeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444 8 999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred CHHHHhhHHHHHHHHHhhh
Q psy18056 83 DPEKQRRWEEKEAKRQMKK 101 (114)
Q Consensus 83 ~peeQrK~eEKE~kk~~KK 101 (114)
||++|+||+|||++|++||
T Consensus 303 speeQrK~eeKe~kk~~rk 321 (321)
T PF07946_consen 303 SPEEQRKYEEKERKKEQRK 321 (321)
T ss_pred CHHHHHHHHHHHHHHhccC
Confidence 9999999999999999986
No 2
>KOG2357|consensus
Probab=99.88 E-value=4e-22 Score=166.69 Aligned_cols=106 Identities=55% Similarity=0.803 Sum_probs=103.7
Q ss_pred ccchhHhhHHHHHHHHHHHHHHhhcccCHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHhhccCCHH
Q psy18056 6 IQDTIDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPE 85 (114)
Q Consensus 6 ~~~~~~~~~~ll~~~~~liD~l~~~~l~~E~~~K~~k~R~~~~~~~~K~~~~~rqE~~q~kkeekkk~erer~~~~l~pe 85 (114)
+.+| +.+.+|+.+++|+||.+.++.||.+++.|.+++|+.+.++++|.+|..|||++|.++++++|++++++++++|||
T Consensus 335 ~k~m-e~iv~i~~li~ylid~~~~~~lS~~~k~kt~~~RQ~~~e~~~K~th~~rqEaaQ~kk~Ek~Ka~kekl~a~~d~E 413 (440)
T KOG2357|consen 335 NKDM-EDIVEILNLIFYLIDKAKKLFLSKDAKAKTDKNRQRVEEEFLKLTHAARQEAAQEKKAEKKKAEKEKLKASGDPE 413 (440)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhhchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 4788 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHhhhcCCCchhhhhh
Q psy18056 86 KQRRWEEKEAKRQMKKKTPKMKQLKVK 112 (114)
Q Consensus 86 eQrK~eEKE~kk~~KK~~~K~k~~k~~ 112 (114)
.|+++|.+|++|++|+.+|||+++.||
T Consensus 414 k~rr~EakerkR~~K~~~pKMkR~~vk 440 (440)
T KOG2357|consen 414 KQRRKEAKERKRQAKKKQPKMKRLAVK 440 (440)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhhccC
Confidence 999999999999999999999999986
No 3
>PRK10455 periplasmic protein; Reviewed
Probab=87.54 E-value=9.6 Score=28.49 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=49.3
Q ss_pred hhcccCHHHHHHHHHhHHHHHHHHhhhhHHHHHH-----------------------HHHHhHHHHHHHHHHHhhccCCH
Q psy18056 28 KRFRLSREAKSKADKNRHRVEEAFLKTTHVARAE-----------------------AAALRKEEKRRLEKEKIMQEEDP 84 (114)
Q Consensus 28 ~~~~l~~E~~~K~~k~R~~~~~~~~K~~~~~rqE-----------------------~~q~kkeekkk~erer~~~~l~p 84 (114)
..+.|+++.+.++................+.+.. +.+.......-.-...|.+-|||
T Consensus 53 ~~L~LT~~Qrqqir~im~~~r~~~~~~~~~~r~~l~~li~ad~FDeaavra~~~k~~~~~~~~~~~~~~~~~qiy~vLTP 132 (161)
T PRK10455 53 KGLNLTDAQKQQIRDIMKAQRDQMKRPPLEERRAMHDIIASDTFDKAKAEAQITKMEAQRKARMLAHMETQNKIYNVLTP 132 (161)
T ss_pred hhCCCCHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 4578999999999888665555433222111111 01111111111224557778999
Q ss_pred HHHhhHHHHHHHHHhhhcCCCchh
Q psy18056 85 EKQRRWEEKEAKRQMKKKTPKMKQ 108 (114)
Q Consensus 85 eeQrK~eEKE~kk~~KK~~~K~k~ 108 (114)
|++..|.+.-.++......++++|
T Consensus 133 EQr~q~~~~~ekr~~~~~~~~~~~ 156 (161)
T PRK10455 133 EQKKQFNANFEKRLTERPAHEGKM 156 (161)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCC
Confidence 999999988888877776666665
No 4
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=66.91 E-value=22 Score=26.71 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=29.2
Q ss_pred CCccchhHhhHHHHHHHHH----HHHHH-hhcccCHHHHHHHHHh
Q psy18056 4 LSIQDTIDEMKPLMQFVFY----TLDRV-KRFRLSREAKSKADKN 43 (114)
Q Consensus 4 ~~~~~~~~~~~~ll~~~~~----liD~l-~~~~l~~E~~~K~~k~ 43 (114)
+++++++..+..++..|.. ++|.| ..+.|+|++...+.+.
T Consensus 90 ipa~eV~~~~s~~~Kav~q~LetlPD~LERd~gL~p~~v~~vQ~~ 134 (152)
T PF07278_consen 90 IPAEEVRREMSEMAKAVVQVLETLPDILERDAGLPPEQVARVQSV 134 (152)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCCHHHHHHHHHH
Confidence 5566775666666666555 88889 5699999988887654
No 5
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=53.79 E-value=56 Score=20.86 Aligned_cols=19 Identities=11% Similarity=0.431 Sum_probs=13.1
Q ss_pred HHHHhhccCCHHHHhhHHH
Q psy18056 74 EKEKIMQEEDPEKQRRWEE 92 (114)
Q Consensus 74 erer~~~~l~peeQrK~eE 92 (114)
-...+.+-||||++.++.+
T Consensus 80 ~~~~~~~vLt~eQk~~~~~ 98 (100)
T PF07813_consen 80 AQHALYAVLTPEQKEKFDQ 98 (100)
T ss_dssp HHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 3445777899999888754
No 6
>KOG4364|consensus
Probab=52.38 E-value=88 Score=29.15 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=8.2
Q ss_pred HHHHhHHHHHHHHHHHhh
Q psy18056 62 AAALRKEEKRRLEKEKIM 79 (114)
Q Consensus 62 ~~q~kkeekkk~erer~~ 79 (114)
+-++.+++..+++.++-+
T Consensus 284 ek~~~keE~~kekee~Kl 301 (811)
T KOG4364|consen 284 EKKAIKEENNKEKEETKL 301 (811)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 7
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.66 E-value=95 Score=22.63 Aligned_cols=19 Identities=11% Similarity=0.303 Sum_probs=10.3
Q ss_pred CCccchhHhhHHHHHHHHHHHHHH
Q psy18056 4 LSIQDTIDEMKPLMQFVFYTLDRV 27 (114)
Q Consensus 4 ~~~~~~~~~~~~ll~~~~~liD~l 27 (114)
..|+|. +++.+++.-.+.|
T Consensus 31 ~EP~d~-----Ei~~fi~~~~~~L 49 (132)
T PF11208_consen 31 AEPKDP-----EIYEFILKHWYKL 49 (132)
T ss_pred CCCCcH-----HHHHHHHHHHHHh
Confidence 456665 4666666544443
No 8
>KOG0163|consensus
Probab=47.85 E-value=2.2e+02 Score=27.42 Aligned_cols=10 Identities=30% Similarity=0.305 Sum_probs=4.4
Q ss_pred HHHHHHHHhh
Q psy18056 70 KRRLEKEKIM 79 (114)
Q Consensus 70 kkk~erer~~ 79 (114)
+++++.|...
T Consensus 953 ~k~~k~e~e~ 962 (1259)
T KOG0163|consen 953 KKRAKAEMET 962 (1259)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 9
>KOG1029|consensus
Probab=44.18 E-value=1.4e+02 Score=28.59 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=10.4
Q ss_pred HHHHHHhhccCCHHHHhhH
Q psy18056 72 RLEKEKIMQEEDPEKQRRW 90 (114)
Q Consensus 72 k~erer~~~~l~peeQrK~ 90 (114)
+.|+.|++ +.-.|++||.
T Consensus 376 qLerQRei-E~qrEEerkk 393 (1118)
T KOG1029|consen 376 QLERQREI-ERQREEERKK 393 (1118)
T ss_pred HHHHHHHH-HHHHHHHHHH
Confidence 34566666 3666666655
No 10
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=39.89 E-value=1.6e+02 Score=22.07 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=19.9
Q ss_pred hhcccCHHHHHHHHHhHHHHHHHHhh
Q psy18056 28 KRFRLSREAKSKADKNRHRVEEAFLK 53 (114)
Q Consensus 28 ~~~~l~~E~~~K~~k~R~~~~~~~~K 53 (114)
..+.|+++.+.++...++...++...
T Consensus 49 ~~L~LTdeQk~qik~i~~~~r~~~k~ 74 (170)
T PRK12750 49 RQLDLTDAQKEQLKEMREANRAEMKA 74 (170)
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999998888766665444
No 11
>PF13939 TisB_toxin: Toxin TisB, type I toxin-antitoxin system
Probab=38.90 E-value=43 Score=18.31 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHhh
Q psy18056 13 MKPLMQFVFYTLDRVKR 29 (114)
Q Consensus 13 ~~~ll~~~~~liD~l~~ 29 (114)
++.|+-.++++.|.+-+
T Consensus 10 ilkl~va~lqlldavlk 26 (28)
T PF13939_consen 10 ILKLIVAVLQLLDAVLK 26 (28)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66888899999998743
No 12
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=34.48 E-value=1.2e+02 Score=21.53 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=9.9
Q ss_pred cCCHHHHhhHHH
Q psy18056 81 EEDPEKQRRWEE 92 (114)
Q Consensus 81 ~l~peeQrK~eE 92 (114)
+||||++.++.+
T Consensus 89 ~l~~eE~~~L~~ 100 (104)
T PF11460_consen 89 ELSPEELEALQA 100 (104)
T ss_pred hCCHHHHHHHHH
Confidence 699999988853
No 13
>KOG2002|consensus
Probab=33.78 E-value=4.5e+02 Score=25.53 Aligned_cols=6 Identities=33% Similarity=0.689 Sum_probs=3.3
Q ss_pred ccCHHH
Q psy18056 31 RLSREA 36 (114)
Q Consensus 31 ~l~~E~ 36 (114)
+|+++.
T Consensus 802 r~~~~~ 807 (1018)
T KOG2002|consen 802 RISKTV 807 (1018)
T ss_pred CCCHHH
Confidence 566643
No 14
>CHL00102 rps20 ribosomal protein S20
Probab=28.89 E-value=1.3e+02 Score=20.65 Aligned_cols=37 Identities=14% Similarity=0.294 Sum_probs=28.4
Q ss_pred CCccchhHhhHHHHHHHHHHHHHHh---hcccCHHHHHHHH
Q psy18056 4 LSIQDTIDEMKPLMQFVFYTLDRVK---RFRLSREAKSKAD 41 (114)
Q Consensus 4 ~~~~~~~~~~~~ll~~~~~liD~l~---~~~l~~E~~~K~~ 41 (114)
+++.|. +....+|..++..||+.. .+|-...++.|..
T Consensus 46 ~~~~d~-~~a~~~l~~a~s~iDkaa~KGviHkN~AaRkKSR 85 (93)
T CHL00102 46 PNSNNK-KKVQETLSSVYSKIDKAVKKGVFHKNTAARKKSK 85 (93)
T ss_pred CCcccH-HHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHH
Confidence 445788 889999999999999974 4566666666654
No 15
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=28.12 E-value=1.8e+02 Score=20.65 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=12.4
Q ss_pred HHHHhhcccCH---HHHHHHHHhHHHHHHH
Q psy18056 24 LDRVKRFRLSR---EAKSKADKNRHRVEEA 50 (114)
Q Consensus 24 iD~l~~~~l~~---E~~~K~~k~R~~~~~~ 50 (114)
||.+++-++.| +.-.++...|+..++.
T Consensus 74 vd~IA~~rVqPvLdeI~erae~qRa~d~e~ 103 (126)
T PF12757_consen 74 VDAIARKRVQPVLDEIDERAEAQRARDEEI 103 (126)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 45554444444 2444455555444433
No 16
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=27.58 E-value=2.8e+02 Score=21.23 Aligned_cols=35 Identities=20% Similarity=0.093 Sum_probs=18.2
Q ss_pred HHhhcccCHHHHHHHHHhHHHHHHHHhhhhHHHHHHH
Q psy18056 26 RVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEA 62 (114)
Q Consensus 26 ~l~~~~l~~E~~~K~~k~R~~~~~~~~K~~~~~rqE~ 62 (114)
.|.+|=++| ..++-..|...+...+......+.|+
T Consensus 69 lL~k~~~~p--I~~vLe~R~~~I~~~L~~Ae~~k~eA 103 (204)
T PRK09174 69 FMSRVILPR--IGGIIETRRDRIAQDLDQAARLKQEA 103 (204)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666766 44444555555555555555444443
No 17
>PF04644 Motilin_ghrelin: Motilin/ghrelin; InterPro: IPR006738 Motilin is a gastrointestinal regulatory polypeptide produced by motilin cells in the duodenal epithelium. It is released into the general circulation at about 100-min intervals during the inter-digestive state and is the most important factor in controlling the inter-digestive migrating contractions. Motilin also stimulates endogenous release of the endocrine pancreas []. This domain is also found in ghrelin, a growth hormone secretagogue synthesised by endocrine cells in the stomach. Ghrelin stimulates growth hormone secretagogue receptors in the pituitary. These receptors are distinct from the growth hormone-releasing hormone receptors, and thus provide a means of controlling pituitary growth hormone release by the gastrointestinal system [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LBJ_A.
Probab=26.71 E-value=54 Score=18.10 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=11.3
Q ss_pred CCHHHHhhHHHHHHHHHhhhc
Q psy18056 82 EDPEKQRRWEEKEAKRQMKKK 102 (114)
Q Consensus 82 l~peeQrK~eEKE~kk~~KK~ 102 (114)
++||-|+- .|||+++-++|+
T Consensus 5 ~~~e~qr~-QekE~nk~~kKs 24 (28)
T PF04644_consen 5 TSSEHQRM-QEKERNKGQKKS 24 (28)
T ss_dssp -HHHHHHH-HHHHHHHH----
T ss_pred cchHHHHH-HHHHhccCcccc
Confidence 56766655 789988877764
No 18
>PF04006 Mpp10: Mpp10 protein; InterPro: IPR007151 This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites [].
Probab=25.98 E-value=45 Score=29.66 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=22.5
Q ss_pred HhhHHHHHHHHHHHHHHhhcccCHHH
Q psy18056 11 DEMKPLMQFVFYTLDRVKRFRLSREA 36 (114)
Q Consensus 11 ~~~~~ll~~~~~liD~l~~~~l~~E~ 36 (114)
..+..||.-+||-.|.|.+|||.|-.
T Consensus 466 ~ei~~l~~~l~~kLDaLsn~hf~Pk~ 491 (600)
T PF04006_consen 466 EEIKELFKKLCYKLDALSNFHFTPKP 491 (600)
T ss_pred HHHHHHHHHHHHHhhccccCCcCCCC
Confidence 45778999999999999999998853
No 19
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=22.58 E-value=3.3e+02 Score=20.31 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=19.5
Q ss_pred hhcccCHHHHHHHHHhHHHHHHHHhhhhHHHHHHH
Q psy18056 28 KRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEA 62 (114)
Q Consensus 28 ~~~~l~~E~~~K~~k~R~~~~~~~~K~~~~~rqE~ 62 (114)
.+|=++| ...+-..|+..+..-....+..+.|+
T Consensus 28 ~kf~~pp--I~~iLe~R~~~I~~~L~~Ae~~k~eA 60 (155)
T PRK06569 28 YKFITPK--AEEIFNNRQTNIQDNITQADTLTIEV 60 (155)
T ss_pred HHHhHHH--HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5666666 34455566666666666666655554
No 20
>KOG2600|consensus
Probab=21.69 E-value=67 Score=29.03 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHhhcccCH
Q psy18056 12 EMKPLMQFVFYTLDRVKRFRLSR 34 (114)
Q Consensus 12 ~~~~ll~~~~~liD~l~~~~l~~ 34 (114)
.+..+|.-+|+.+|.|++|||.|
T Consensus 451 ei~~~~~~l~~kLDaLs~fhf~P 473 (596)
T KOG2600|consen 451 EIKSLMKSLFLKLDALSNFHFVP 473 (596)
T ss_pred HHHHHHHHHHHhhhhhcceeecC
Confidence 46678888999999999999865
No 21
>PHA02679 ORF091 IMV membrane protein; Provisional
Probab=21.52 E-value=54 Score=20.65 Aligned_cols=27 Identities=11% Similarity=0.331 Sum_probs=21.2
Q ss_pred HhhHHHHHHHHHHHHHHhhcccCHHHH
Q psy18056 11 DEMKPLMQFVFYTLDRVKRFRLSREAK 37 (114)
Q Consensus 11 ~~~~~ll~~~~~liD~l~~~~l~~E~~ 37 (114)
.+..|++-+.+.|+-.+.++.+|+.++
T Consensus 3 tnYeP~iL~~i~~~al~~N~~lS~~~K 29 (53)
T PHA02679 3 SDYDPAVLVLIFCAALAANFYMPPQTK 29 (53)
T ss_pred cccccHHHHHHHHHHHHHHeeeCcccc
Confidence 445688888888888889999998654
Done!