Query psy18056
Match_columns 114
No_of_seqs 100 out of 134
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 21:22:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3itf_A Periplasmic adaptor pro 37.2 1.1E+02 0.0036 21.5 8.7 73 28-100 42-137 (145)
2 1lbj_A Motilin; A-helix, B-tur 25.4 45 0.0015 17.3 1.9 18 85-102 8-25 (26)
3 3oeo_A Spheroplast protein Y; 23.0 1.8E+02 0.0063 19.7 5.6 25 76-100 101-125 (138)
4 4efa_E V-type proton ATPase su 20.8 2.4E+02 0.0083 20.3 8.9 42 4-57 8-49 (233)
5 3v6i_A V-type ATP synthase sub 20.2 2.3E+02 0.0077 19.7 6.2 37 32-68 7-43 (187)
6 3lbw_A M2 protein; proton chan 19.8 93 0.0032 15.6 2.3 17 11-27 6-22 (23)
7 2oez_A UPF0289 protein VP2528; 17.8 1.8E+02 0.006 22.3 4.7 42 7-49 36-77 (247)
8 3zs9_C Golgi to ER traffic pro 16.0 1.4E+02 0.0049 16.7 2.8 12 80-91 2-13 (38)
9 3bkd_A Transmembrane domain of 15.5 1.3E+02 0.0044 15.4 2.3 17 11-27 9-25 (26)
10 3obc_A Pyrophosphatase; dimeri 15.4 2.1E+02 0.007 19.4 4.1 37 9-46 73-109 (118)
No 1
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=37.25 E-value=1.1e+02 Score=21.50 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=43.6
Q ss_pred hhcccCHHHHHHHHHhHHHHHHHHhhhhHHHHHH----------------HHHHhHHHHH-------HHHHHHhhccCCH
Q psy18056 28 KRFRLSREAKSKADKNRHRVEEAFLKTTHVARAE----------------AAALRKEEKR-------RLEKEKIMQEEDP 84 (114)
Q Consensus 28 ~~~~l~~E~~~K~~k~R~~~~~~~~K~~~~~rqE----------------~~q~kkeekk-------k~erer~~~~l~p 84 (114)
..+.|+.+.+.++...+.....+........+.+ +...+..+.. =.-+-.|.+-|+|
T Consensus 42 ~~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~ad~fDeaa~ral~~~~~~~~~e~~v~r~k~~~qiy~vLTP 121 (145)
T 3itf_A 42 DGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQAEKMANEQIARQVEMAKVRNQMYRLLTP 121 (145)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 5678999999999988887776655443332221 1111111100 0112246667999
Q ss_pred HHHhhHHHHHHHHHhh
Q psy18056 85 EKQRRWEEKEAKRQMK 100 (114)
Q Consensus 85 eeQrK~eEKE~kk~~K 100 (114)
|++.++.+.-.++-..
T Consensus 122 EQk~ql~e~~~~r~~~ 137 (145)
T 3itf_A 122 EQQAVLNEKHQQRMEQ 137 (145)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998877766443
No 2
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=25.39 E-value=45 Score=17.25 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=11.2
Q ss_pred HHHhhHHHHHHHHHhhhc
Q psy18056 85 EKQRRWEEKEAKRQMKKK 102 (114)
Q Consensus 85 eeQrK~eEKE~kk~~KK~ 102 (114)
-+-++..|+|+.+-+||+
T Consensus 8 selqr~qEkErNkgqkKs 25 (26)
T 1lbj_A 8 GELQRMQEKERNKGQXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhccCCccC
Confidence 345677888888877765
No 3
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=22.96 E-value=1.8e+02 Score=19.75 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=16.4
Q ss_pred HHhhccCCHHHHhhHHHHHHHHHhh
Q psy18056 76 EKIMQEEDPEKQRRWEEKEAKRQMK 100 (114)
Q Consensus 76 er~~~~l~peeQrK~eEKE~kk~~K 100 (114)
-.|.+-|+||++.+|.+.-.++-.+
T Consensus 101 ~~~~~vLTPEQr~q~~~~~~kr~~~ 125 (138)
T 3oeo_A 101 NKIYNILTPEQKKQFNANFEKRLTE 125 (138)
T ss_dssp HHHHTTSCHHHHHHHHHHTC-----
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4577779999999998766555444
No 4
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=20.82 E-value=2.4e+02 Score=20.34 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=26.3
Q ss_pred CCccchhHhhHHHHHHHHHHHHHHhhcccCHHHHHHHHHhHHHHHHHHhhhhHH
Q psy18056 4 LSIQDTIDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHV 57 (114)
Q Consensus 4 ~~~~~~~~~~~~ll~~~~~liD~l~~~~l~~E~~~K~~k~R~~~~~~~~K~~~~ 57 (114)
.|++++...+..++.++. .|+..|+........+++..+...
T Consensus 8 l~~~~v~~~i~~m~~fI~------------qEA~eKA~EI~~kAeeE~~~ek~~ 49 (233)
T 4efa_E 8 LTPNQVNDELNKMQAFIR------------KEAEEKAKEIQLKADQEYEIEKTN 49 (233)
T ss_dssp SCHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555344445555444 588888888888887777554444
No 5
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=20.22 E-value=2.3e+02 Score=19.73 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=24.3
Q ss_pred cCHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHhHH
Q psy18056 32 LSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKE 68 (114)
Q Consensus 32 l~~E~~~K~~k~R~~~~~~~~K~~~~~rqE~~q~kke 68 (114)
|+.++..++.....+...+..+...+.++++......
T Consensus 7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~ 43 (187)
T 3v6i_A 7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQA 43 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777766666666555444333
No 6
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=19.76 E-value=93 Score=15.60 Aligned_cols=17 Identities=18% Similarity=0.651 Sum_probs=13.6
Q ss_pred HhhHHHHHHHHHHHHHH
Q psy18056 11 DEMKPLMQFVFYTLDRV 27 (114)
Q Consensus 11 ~~~~~ll~~~~~liD~l 27 (114)
+++.-++.+++.+.|++
T Consensus 6 a~iigIlHLiLwIlDrL 22 (23)
T 3lbw_A 6 ASIIAILHLILWILDRL 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 45667888999999976
No 7
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=17.79 E-value=1.8e+02 Score=22.26 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=33.9
Q ss_pred cchhHhhHHHHHHHHHHHHHHhhcccCHHHHHHHHHhHHHHHH
Q psy18056 7 QDTIDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEE 49 (114)
Q Consensus 7 ~~~~~~~~~ll~~~~~liD~l~~~~l~~E~~~K~~k~R~~~~~ 49 (114)
++. ......|..+|-++|.+.+..++.|..+-+++-+.....
T Consensus 36 ~~~-~~~~~a~~~Lfelldv~~R~dlK~eLlKeLERq~~~L~~ 77 (247)
T 2oez_A 36 ADN-HQYQLFFRALFDMVEIFEQIQLKSELAKDLEKQRLSYRH 77 (247)
T ss_dssp CST-THHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred CCH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444 556678888999999999999999999888888776544
No 8
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=15.97 E-value=1.4e+02 Score=16.70 Aligned_cols=12 Identities=25% Similarity=0.255 Sum_probs=8.0
Q ss_pred ccCCHHHHhhHH
Q psy18056 80 QEEDPEKQRRWE 91 (114)
Q Consensus 80 ~~l~peeQrK~e 91 (114)
.+||+++|+++.
T Consensus 2 sels~~ekaRlr 13 (38)
T 3zs9_C 2 SELTEAEKRRLL 13 (38)
T ss_dssp --CCHHHHHHHH
T ss_pred cccCHHHHHHHH
Confidence 368888888874
No 9
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=15.51 E-value=1.3e+02 Score=15.44 Aligned_cols=17 Identities=18% Similarity=0.628 Sum_probs=13.2
Q ss_pred HhhHHHHHHHHHHHHHH
Q psy18056 11 DEMKPLMQFVFYTLDRV 27 (114)
Q Consensus 11 ~~~~~ll~~~~~liD~l 27 (114)
+.+.-++.+++.+.|++
T Consensus 9 a~iiGilHLiLwIldrl 25 (26)
T 3bkd_A 9 ASIMGILHLILWILDRL 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 45667888888888875
No 10
>3obc_A Pyrophosphatase; dimeric four alpha-helical bundle, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PGE; 1.80A {Archaeoglobus fulgidus} SCOP: a.204.1.0
Probab=15.42 E-value=2.1e+02 Score=19.37 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=20.9
Q ss_pred hhHhhHHHHHHHHHHHHHHhhcccCHHHHHHHHHhHHH
Q psy18056 9 TIDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHR 46 (114)
Q Consensus 9 ~~~~~~~ll~~~~~liD~l~~~~l~~E~~~K~~k~R~~ 46 (114)
+.+.+..+|-+++.|.|.++ +.|......|..+|..+
T Consensus 73 l~eELADVL~Yl~~LA~~lg-IDLeea~~~Km~Kn~~R 109 (118)
T 3obc_A 73 VEEEIADVLIYLLFLCDVAE-INPIEAVKRKMEKNERK 109 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHh
Confidence 33444445555555554443 34555578888888765
Done!