Query psy18056
Match_columns 114
No_of_seqs 100 out of 134
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 21:22:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18056.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/18056hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fzta1 a.46.3.1 (A:1-78) Hypo 12.2 1.2E+02 0.0084 17.9 3.5 28 73-100 27-54 (78)
2 d1m5xa_ d.95.2.1 (A:) DNA endo 10.6 2E+02 0.014 18.1 4.7 31 17-47 103-133 (161)
3 d1vpma_ d.38.1.1 (A:) Acyl-CoA 10.3 61 0.0045 20.6 1.9 21 82-102 131-151 (155)
4 d1tlta2 d.81.1.5 (A:128-267) V 9.7 86 0.0063 20.2 2.4 21 4-27 27-47 (140)
5 d1jb0m_ f.23.19.1 (M:) Subunit 8.4 72 0.0053 15.7 1.2 24 12-35 5-28 (31)
6 d1b0nb_ a.34.1.1 (B:) SinI ant 8.4 83 0.0061 15.3 1.5 11 81-91 18-28 (31)
7 d2ooka1 c.13.2.2 (A:2-126) Hyp 8.0 53 0.0038 20.4 0.7 23 2-25 26-48 (125)
8 d2uubt1 a.7.6.1 (T:8-106) Ribo 7.4 2E+02 0.015 17.2 3.4 35 6-41 39-76 (99)
9 d2ohwa1 d.79.8.1 (A:3-130) Unc 6.5 44 0.0032 21.5 -0.3 10 82-91 18-27 (128)
10 d2lefa_ a.21.1.1 (A:) Lymphoid 6.5 2E+02 0.015 16.0 2.9 15 81-95 43-57 (86)
No 1
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]}
Probab=12.20 E-value=1.2e+02 Score=17.95 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=23.0
Q ss_pred HHHHHhhccCCHHHHhhHHHHHHHHHhh
Q psy18056 73 LEKEKIMQEEDPEKQRRWEEKEAKRQMK 100 (114)
Q Consensus 73 ~erer~~~~l~peeQrK~eEKE~kk~~K 100 (114)
..++.+|..|+.+..+-..|+.+++...
T Consensus 27 ~kReell~~Lp~~~L~ei~EkD~kR~e~ 54 (78)
T d2fzta1 27 NKRKELMEGLPKDKLSEILEKDRKRLEI 54 (78)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcHHHHHHHHHHhHHHHHH
Confidence 4567889899999999999999887653
No 2
>d1m5xa_ d.95.2.1 (A:) DNA endonuclease I-MsoI {Monomastix sp. cl-1997 [TaxId: 141716]}
Probab=10.61 E-value=2e+02 Score=18.12 Aligned_cols=31 Identities=6% Similarity=-0.089 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhcccCHHHHHHHHHhHHHH
Q psy18056 17 MQFVFYTLDRVKRFRLSREAKSKADKNRHRV 47 (114)
Q Consensus 17 l~~~~~liD~l~~~~l~~E~~~K~~k~R~~~ 47 (114)
+.+++.+|+.+...|++++...++......+
T Consensus 103 ~~~~~~ii~~l~~~~~t~~~~~~i~~l~~~~ 133 (161)
T d1m5xa_ 103 ANRILHIINLYPQAQKNPSKFLDLVKIVDDV 133 (161)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3445566666666688888777766655443
No 3
>d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus halodurans [TaxId: 86665]}
Probab=10.30 E-value=61 Score=20.62 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=13.5
Q ss_pred CCHHHHhhHHHHHHHHHhhhc
Q psy18056 82 EDPEKQRRWEEKEAKRQMKKK 102 (114)
Q Consensus 82 l~peeQrK~eEKE~kk~~KK~ 102 (114)
-++++++.|++-.+.++.++.
T Consensus 131 ~t~ee~~~~~~a~~r~~~r~~ 151 (155)
T d1vpma_ 131 QTEEEKRLYETAPARKENRKK 151 (155)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 367777777766665555544
No 4
>d1tlta2 d.81.1.5 (A:128-267) Virulence factor MviM {Escherichia coli [TaxId: 562]}
Probab=9.70 E-value=86 Score=20.16 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=14.6
Q ss_pred CCccchhHhhHHHHHHHHHHHHHH
Q psy18056 4 LSIQDTIDEMKPLMQFVFYTLDRV 27 (114)
Q Consensus 4 ~~~~~~~~~~~~ll~~~~~liD~l 27 (114)
+.|.|+ . .-||..|+++||-+
T Consensus 27 ~~P~d~-r--~~l~DDfIHvvDT~ 47 (140)
T d1tlta2 27 VGPHDL-Y--FTLLDDYLHVVDTA 47 (140)
T ss_dssp CCSSCH-H--HHHHHTHHHHHHHH
T ss_pred CCCCcc-e--eeehhhhhHHHHHH
Confidence 445666 2 24888889999986
No 5
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=8.45 E-value=72 Score=15.71 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHhhcccCHH
Q psy18056 12 EMKPLMQFVFYTLDRVKRFRLSRE 35 (114)
Q Consensus 12 ~~~~ll~~~~~liD~l~~~~l~~E 35 (114)
++.-++.+++.++--+-.|+|+.|
T Consensus 5 dtqv~valvial~pg~lafrlate 28 (31)
T d1jb0m_ 5 DTQVYVALVIALLPAVLAFRLSTE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467777777777766777665
No 6
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=8.43 E-value=83 Score=15.29 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=9.4
Q ss_pred cCCHHHHhhHH
Q psy18056 81 EEDPEKQRRWE 91 (114)
Q Consensus 81 ~l~peeQrK~e 91 (114)
..|||+-|||.
T Consensus 18 nispeeirkyl 28 (31)
T d1b0nb_ 18 NISPEEIRKYL 28 (31)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 48999999985
No 7
>d2ooka1 c.13.2.2 (A:2-126) Hypothetical protein Sfri0576 {Shewanella frigidimarina [TaxId: 56812]}
Probab=8.04 E-value=53 Score=20.44 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=18.2
Q ss_pred CCCCccchhHhhHHHHHHHHHHHH
Q psy18056 2 GQLSIQDTIDEMKPLMQFVFYTLD 25 (114)
Q Consensus 2 ~~~~~~~~~~~~~~ll~~~~~liD 25 (114)
|.++.+|| ..+.|.+...+.-.+
T Consensus 26 G~lt~~D~-~~~~~~le~~l~~~~ 48 (125)
T d2ooka1 26 GTLTHEDY-LVITPMLEGALSQVD 48 (125)
T ss_dssp EEECHHHH-HHHHHHHHHHHTTCC
T ss_pred EEECHHHH-HHHHHHHHHHHHhcC
Confidence 77889999 888898888775433
No 8
>d2uubt1 a.7.6.1 (T:8-106) Ribosomal protein S20 {Thermus thermophilus [TaxId: 274]}
Probab=7.37 E-value=2e+02 Score=17.20 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=25.3
Q ss_pred ccchhHhhHHHHHHHHHHHHHHh---hcccCHHHHHHHH
Q psy18056 6 IQDTIDEMKPLMQFVFYTLDRVK---RFRLSREAKSKAD 41 (114)
Q Consensus 6 ~~~~~~~~~~ll~~~~~liD~l~---~~~l~~E~~~K~~ 41 (114)
..|. +....+|..++..||+.. -+|-..-++.|..
T Consensus 39 ~~d~-e~A~~~l~~a~s~iDKAakKgiiHkN~AaRkKSR 76 (99)
T d2uubt1 39 EGKA-EEALKIMRKAESLIDKAAKGSTLHKNAAARRKSR 76 (99)
T ss_dssp TTCH-HHHHHHHHHHHHHHHHHTTSSTTCSHHHHHHHHH
T ss_pred ccCH-HHHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence 4566 778899999999999984 3455555655543
No 9
>d2ohwa1 d.79.8.1 (A:3-130) Uncharacterized protein YueI {Bacillus subtilis [TaxId: 1423]}
Probab=6.54 E-value=44 Score=21.46 Aligned_cols=10 Identities=10% Similarity=0.421 Sum_probs=8.4
Q ss_pred CCHHHHhhHH
Q psy18056 82 EDPEKQRRWE 91 (114)
Q Consensus 82 l~peeQrK~e 91 (114)
+.|+|||+|+
T Consensus 18 ~kPDEqr~yL 27 (128)
T d2ohwa1 18 TKPDERHLFL 27 (128)
T ss_dssp SHHHHHHHTT
T ss_pred CCHHHHHHhc
Confidence 5699999985
No 10
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.50 E-value=2e+02 Score=16.01 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=11.7
Q ss_pred cCCHHHHhhHHHHHH
Q psy18056 81 EEDPEKQRRWEEKEA 95 (114)
Q Consensus 81 ~l~peeQrK~eEKE~ 95 (114)
.|||++...|.+...
T Consensus 43 ~ls~~eK~~y~~~A~ 57 (86)
T d2lefa_ 43 ALSREEQAKYYELAR 57 (86)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 599999999975443
Done!