BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy18056
MGQLSIQDTIDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARA
EAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKKKTPKMKQLKVKAL

High Scoring Gene Products

Symbol, full name Information P value
CG17593 protein from Drosophila melanogaster 2.4e-16
CCDC47
Uncharacterized protein
protein from Gallus gallus 3.0e-16
ccdc47
coiled-coil domain containing 47
gene_product from Danio rerio 6.8e-16
Ccdc47
coiled-coil domain containing 47
protein from Mus musculus 8.6e-16
CCDC47
Coiled-coil domain-containing protein 47
protein from Bos taurus 1.1e-15
CCDC47
Coiled-coil domain-containing protein 47
protein from Homo sapiens 1.1e-15
Ccdc47
coiled-coil domain containing 47
gene from Rattus norvegicus 1.1e-15
CCDC47
Uncharacterized protein
protein from Sus scrofa 3.4e-15
CCDC47
Uncharacterized protein
protein from Canis lupus familiaris 1.7e-14
ccdc-47
Protein CCDC-47
protein from Caenorhabditis elegans 8.6e-10

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy18056
        (114 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0031544 - symbol:CG17593 species:7227 "Drosophila ...   210  2.4e-16   1
UNIPROTKB|F1NL71 - symbol:CCDC47 "Uncharacterized protein...   209  3.0e-16   1
ZFIN|ZDB-GENE-040912-15 - symbol:ccdc47 "coiled-coil doma...   206  6.8e-16   1
MGI|MGI:1914413 - symbol:Ccdc47 "coiled-coil domain conta...   205  8.6e-16   1
UNIPROTKB|Q3ZC50 - symbol:CCDC47 "Coiled-coil domain-cont...   204  1.1e-15   1
UNIPROTKB|Q96A33 - symbol:CCDC47 "Coiled-coil domain-cont...   204  1.1e-15   1
RGD|1308813 - symbol:Ccdc47 "coiled-coil domain containin...   204  1.1e-15   1
UNIPROTKB|I3LAE8 - symbol:CCDC47 "Uncharacterized protein...   199  3.4e-15   1
UNIPROTKB|E2RBH4 - symbol:CCDC47 "Uncharacterized protein...   193  1.7e-14   1
UNIPROTKB|Q23382 - symbol:ccdc-47 "Protein CCDC-47" speci...   149  8.6e-10   1


>FB|FBgn0031544 [details] [associations]
            symbol:CG17593 species:7227 "Drosophila melanogaster"
            [GO:0005737 "cytoplasm" evidence=IDA] GO:GO:0005737
            eggNOG:NOG323483 InterPro:IPR012879 PANTHER:PTHR12883 Pfam:PF07946
            EMBL:AY070664 STRING:Q8SZL8 PaxDb:Q8SZL8 PRIDE:Q8SZL8
            FlyBase:FBgn0031544 InParanoid:Q8SZL8 OrthoDB:EOG49GHZ2
            ChiTaRS:CG17593 ArrayExpress:Q8SZL8 Bgee:Q8SZL8 Uniprot:Q8SZL8
        Length = 476

 Score = 210 (79.0 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 38/85 (44%), Positives = 54/85 (63%)

Query:    10 IDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVXXXXXXXXXXXX 69
             ++ +KPL+  +FY ++R+K +R+S+E K+K+DKNR RVEE FLK+TH             
Sbjct:   372 METIKPLLLLIFYLMERLKTYRMSKEGKAKSDKNRQRVEEEFLKSTHAARAEAAAQRRED 431

Query:    70 XXXXXXXXIMQEEDPEKQRRWEEKE 94
                     I+ +EDPEKQRRWE KE
Sbjct:   432 KRKQEKERILADEDPEKQRRWEAKE 456


>UNIPROTKB|F1NL71 [details] [associations]
            symbol:CCDC47 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0005509 "calcium ion binding" evidence=IEA]
            [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006983 "ER
            overload response" evidence=IEA] [GO:0009790 "embryo development"
            evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0055074 "calcium ion homeostasis" evidence=IEA]
            GO:GO:0005783 GO:GO:0005509 GO:GO:0055074 GO:GO:0006983
            InterPro:IPR012879 PANTHER:PTHR12883 Pfam:PF07946 OMA:FAVGTKK
            GeneTree:ENSGT00390000013997 EMBL:AADN02056764 IPI:IPI00600942
            Ensembl:ENSGALT00000000783 Uniprot:F1NL71
        Length = 476

 Score = 209 (78.6 bits), Expect = 3.0e-16, P = 3.0e-16
 Identities = 45/91 (49%), Positives = 54/91 (59%)

Query:     2 GQLSIQDTIDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVXXXX 61
             G  S +D ++ + PLM  V Y++D+ K+FRL+RE K KADKNR RVEE FLK THV    
Sbjct:   362 GNTSPKD-MESLLPLMSMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKLTHVQRQE 420

Query:    62 XXXXXXXXXXXXXXXXIMQEEDPEKQRRWEE 92
                             IM EEDPEKQRR EE
Sbjct:   421 AAQSRREEKKRAEKERIMNEEDPEKQRRLEE 451


>ZFIN|ZDB-GENE-040912-15 [details] [associations]
            symbol:ccdc47 "coiled-coil domain containing 47"
            species:7955 "Danio rerio" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] ZFIN:ZDB-GENE-040912-15
            GO:GO:0016021 CTD:57003 eggNOG:NOG323483 HOGENOM:HOG000007179
            HOVERGEN:HBG081033 OrthoDB:EOG4WWRJM InterPro:IPR012879
            PANTHER:PTHR12883 Pfam:PF07946 EMBL:BC081592 IPI:IPI00487160
            RefSeq:NP_001004551.1 UniGene:Dr.79744 PRIDE:Q66I12 GeneID:447812
            KEGG:dre:447812 InParanoid:Q66I12 NextBio:20832336
            ArrayExpress:Q66I12 Uniprot:Q66I12
        Length = 486

 Score = 206 (77.6 bits), Expect = 6.8e-16, P = 6.8e-16
 Identities = 44/92 (47%), Positives = 54/92 (58%)

Query:     1 MGQLSIQDTIDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVXXX 60
             MG  S +D +D + PLM  V Y++D+VK+ RL+RE K KAD+NR RVEE FLK TH    
Sbjct:   371 MGNTSPKD-MDSLLPLMNMVIYSIDKVKKLRLNREGKQKADRNRARVEENFLKQTHAQRQ 429

Query:    61 XXXXXXXXXXXXXXXXXIMQEEDPEKQRRWEE 92
                              IM EEDPE+QRR EE
Sbjct:   430 EAAQTRREEKKRAEKERIMNEEDPERQRRLEE 461


>MGI|MGI:1914413 [details] [associations]
            symbol:Ccdc47 "coiled-coil domain containing 47"
            species:10090 "Mus musculus" [GO:0005509 "calcium ion binding"
            evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
            [GO:0006983 "ER overload response" evidence=IMP] [GO:0009790
            "embryo development" evidence=IMP] [GO:0009791 "post-embryonic
            development" evidence=IMP] [GO:0016020 "membrane" evidence=IEA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0055074
            "calcium ion homeostasis" evidence=IMP] MGI:MGI:1914413
            GO:GO:0005783 GO:GO:0016021 GO:GO:0005509 GO:GO:0009790
            GO:GO:0009791 GO:GO:0055074 GO:GO:0006983 CTD:57003
            eggNOG:NOG323483 HOGENOM:HOG000007179 HOVERGEN:HBG081033
            OrthoDB:EOG4WWRJM InterPro:IPR012879 PANTHER:PTHR12883 Pfam:PF07946
            OMA:FAVGTKK EMBL:AB040489 EMBL:AK011882 EMBL:AK078812 EMBL:AK132273
            EMBL:AK162160 EMBL:AL596331 IPI:IPI00310518 IPI:IPI00648435
            IPI:IPI00648479 RefSeq:NP_080285.2 UniGene:Mm.22109 STRING:Q9D024
            PhosphoSite:Q9D024 PaxDb:Q9D024 PRIDE:Q9D024
            Ensembl:ENSMUST00000002043 Ensembl:ENSMUST00000106865 GeneID:67163
            KEGG:mmu:67163 UCSC:uc007lyj.1 GeneTree:ENSGT00390000013997
            InParanoid:B1AR94 NextBio:323770 Bgee:Q9D024 CleanEx:MM_CCDC47
            Genevestigator:Q9D024 GermOnline:ENSMUSG00000069631 Uniprot:Q9D024
        Length = 483

 Score = 205 (77.2 bits), Expect = 8.6e-16, P = 8.6e-16
 Identities = 42/83 (50%), Positives = 50/83 (60%)

Query:    10 IDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVXXXXXXXXXXXX 69
             ++ + PLM  V Y++D+ K+FRL+RE K KADKNR RVEE FLK THV            
Sbjct:   376 MESLLPLMNMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKLTHVQRQEAAQSRREE 435

Query:    70 XXXXXXXXIMQEEDPEKQRRWEE 92
                     IM EEDPEKQRR EE
Sbjct:   436 KKRAEKERIMNEEDPEKQRRLEE 458


>UNIPROTKB|Q3ZC50 [details] [associations]
            symbol:CCDC47 "Coiled-coil domain-containing protein 47"
            species:9913 "Bos taurus" [GO:0016021 "integral to membrane"
            evidence=IEA] GO:GO:0016021 EMBL:BT030561 EMBL:BC102915
            IPI:IPI00715536 RefSeq:NP_001030505.1 UniGene:Bt.91231 PRIDE:Q3ZC50
            GeneID:540167 KEGG:bta:540167 CTD:57003 eggNOG:NOG323483
            HOGENOM:HOG000007179 HOVERGEN:HBG081033 InParanoid:Q3ZC50
            OrthoDB:EOG4WWRJM NextBio:20878461 InterPro:IPR012879
            PANTHER:PTHR12883 Pfam:PF07946 Uniprot:Q3ZC50
        Length = 483

 Score = 204 (76.9 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 42/83 (50%), Positives = 50/83 (60%)

Query:    10 IDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVXXXXXXXXXXXX 69
             ++ + PLM  V Y++D+ K+FRL+RE K KADKNR RVEE FLK THV            
Sbjct:   376 MEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKLTHVQRQEAAQSRREE 435

Query:    70 XXXXXXXXIMQEEDPEKQRRWEE 92
                     IM EEDPEKQRR EE
Sbjct:   436 KKRAEKERIMNEEDPEKQRRLEE 458


>UNIPROTKB|Q96A33 [details] [associations]
            symbol:CCDC47 "Coiled-coil domain-containing protein 47"
            species:9606 "Homo sapiens" [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0005509 "calcium ion binding" evidence=IEA]
            [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006983 "ER
            overload response" evidence=IEA] [GO:0009790 "embryo development"
            evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0055074 "calcium ion homeostasis" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005515 "protein binding"
            evidence=IPI] GO:GO:0005783 GO:GO:0016021 GO:GO:0005509
            GO:GO:0009790 GO:GO:0009791 EMBL:CH471109 GO:GO:0055074
            GO:GO:0006983 CTD:57003 eggNOG:NOG323483 HOVERGEN:HBG081033
            OrthoDB:EOG4WWRJM InterPro:IPR012879 PANTHER:PTHR12883 Pfam:PF07946
            EMBL:AF226054 EMBL:AK027786 EMBL:AK027844 EMBL:AK075387
            EMBL:AK314328 EMBL:BC008905 EMBL:BC013600 EMBL:AF113221
            IPI:IPI00024642 IPI:IPI00743775 RefSeq:NP_064583.2
            UniGene:Hs.202011 ProteinModelPortal:Q96A33 IntAct:Q96A33
            MINT:MINT-1375420 PhosphoSite:Q96A33 DMDM:74731083 PaxDb:Q96A33
            PRIDE:Q96A33 DNASU:57003 Ensembl:ENST00000225726
            Ensembl:ENST00000403162 Ensembl:ENST00000582252 GeneID:57003
            KEGG:hsa:57003 UCSC:uc002jbs.4 UCSC:uc002jbt.2
            GeneCards:GC17M061822 HGNC:HGNC:24856 HPA:HPA029674
            neXtProt:NX_Q96A33 PharmGKB:PA142672164 InParanoid:Q96A33
            OMA:FAVGTKK PhylomeDB:Q96A33 ChiTaRS:CCDC47 GenomeRNAi:57003
            NextBio:62739 Bgee:Q96A33 CleanEx:HS_CCDC47 Genevestigator:Q96A33
            GermOnline:ENSG00000108588 Uniprot:Q96A33
        Length = 483

 Score = 204 (76.9 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 42/83 (50%), Positives = 50/83 (60%)

Query:    10 IDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVXXXXXXXXXXXX 69
             ++ + PLM  V Y++D+ K+FRL+RE K KADKNR RVEE FLK THV            
Sbjct:   376 MEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKLTHVQRQEAAQSRREE 435

Query:    70 XXXXXXXXIMQEEDPEKQRRWEE 92
                     IM EEDPEKQRR EE
Sbjct:   436 KKRAEKERIMNEEDPEKQRRLEE 458


>RGD|1308813 [details] [associations]
            symbol:Ccdc47 "coiled-coil domain containing 47" species:10116
            "Rattus norvegicus" [GO:0005509 "calcium ion binding"
            evidence=IEA;ISO] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA;ISO] [GO:0006983 "ER overload response"
            evidence=IEA;ISO] [GO:0009790 "embryo development"
            evidence=IEA;ISO] [GO:0009791 "post-embryonic development"
            evidence=IEA;ISO] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0055074 "calcium ion homeostasis" evidence=IEA;ISO] RGD:1308813
            GO:GO:0005783 GO:GO:0016021 GO:GO:0005509 GO:GO:0009790
            GO:GO:0009791 GO:GO:0055074 GO:GO:0006983 CTD:57003
            eggNOG:NOG323483 HOGENOM:HOG000007179 HOVERGEN:HBG081033
            OrthoDB:EOG4WWRJM InterPro:IPR012879 PANTHER:PTHR12883 Pfam:PF07946
            OMA:FAVGTKK GeneTree:ENSGT00390000013997 EMBL:BC085824
            IPI:IPI00203647 RefSeq:NP_001013996.1 UniGene:Rn.107772
            PhosphoSite:Q5U2X6 PRIDE:Q5U2X6 Ensembl:ENSRNOT00000012533
            GeneID:303606 KEGG:rno:303606 UCSC:RGD:1308813 InParanoid:Q5U2X6
            NextBio:651728 ArrayExpress:Q5U2X6 Genevestigator:Q5U2X6
            GermOnline:ENSRNOG00000009006 Uniprot:Q5U2X6
        Length = 483

 Score = 204 (76.9 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 42/83 (50%), Positives = 50/83 (60%)

Query:    10 IDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVXXXXXXXXXXXX 69
             ++ + PLM  V Y++D+ K+FRL+RE K KADKNR RVEE FLK THV            
Sbjct:   376 MEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKLTHVQRQEAAQSRREE 435

Query:    70 XXXXXXXXIMQEEDPEKQRRWEE 92
                     IM EEDPEKQRR EE
Sbjct:   436 KKRAEKERIMNEEDPEKQRRLEE 458


>UNIPROTKB|I3LAE8 [details] [associations]
            symbol:CCDC47 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0055074 "calcium ion homeostasis" evidence=IEA]
            [GO:0009791 "post-embryonic development" evidence=IEA] [GO:0009790
            "embryo development" evidence=IEA] [GO:0006983 "ER overload
            response" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] [GO:0005509 "calcium ion binding" evidence=IEA]
            GO:GO:0005783 GO:GO:0005509 GO:GO:0009790 GO:GO:0009791
            GO:GO:0055074 GO:GO:0006983 CTD:57003 InterPro:IPR012879
            PANTHER:PTHR12883 Pfam:PF07946 OMA:FAVGTKK
            GeneTree:ENSGT00390000013997 EMBL:CU466402 RefSeq:XP_003131339.3
            Ensembl:ENSSSCT00000030857 GeneID:100513109 KEGG:ssc:100513109
            Uniprot:I3LAE8
        Length = 459

 Score = 199 (75.1 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 41/82 (50%), Positives = 49/82 (59%)

Query:    10 IDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVXXXXXXXXXXXX 69
             ++ + PLM  V Y++D+ K+FRL+RE K KADKNR RVEE FLK THV            
Sbjct:   376 MEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKLTHVQRQEAAQSRREE 435

Query:    70 XXXXXXXXIMQEEDPEKQRRWE 91
                     IM EEDPEKQRR E
Sbjct:   436 KKRAEKERIMNEEDPEKQRRLE 457


>UNIPROTKB|E2RBH4 [details] [associations]
            symbol:CCDC47 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0055074 "calcium ion homeostasis"
            evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
            [GO:0006983 "ER overload response" evidence=IEA] [GO:0005783
            "endoplasmic reticulum" evidence=IEA] [GO:0005509 "calcium ion
            binding" evidence=IEA] GO:GO:0005783 GO:GO:0005509 GO:GO:0009790
            GO:GO:0009791 GO:GO:0055074 GO:GO:0006983 InterPro:IPR012879
            PANTHER:PTHR12883 Pfam:PF07946 OMA:FAVGTKK
            GeneTree:ENSGT00390000013997 EMBL:AAEX03006359
            Ensembl:ENSCAFT00000020422 Uniprot:E2RBH4
        Length = 485

 Score = 193 (73.0 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 42/85 (49%), Positives = 50/85 (58%)

Query:    10 IDEMKPLMQFVFYTLDRVKRFRLSRE--AKSKADKNRHRVEEAFLKTTHVXXXXXXXXXX 67
             ++ + PLM  V Y++D+ K+FRL+RE   K KADKNR RVEE FLK THV          
Sbjct:   376 MEALLPLMNMVIYSIDKAKKFRLNREEKGKQKADKNRARVEENFLKLTHVQRQEAAQSRR 435

Query:    68 XXXXXXXXXXIMQEEDPEKQRRWEE 92
                       IM EEDPEKQRR EE
Sbjct:   436 EEKKRAEKERIMNEEDPEKQRRLEE 460


>UNIPROTKB|Q23382 [details] [associations]
            symbol:ccdc-47 "Protein CCDC-47" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] eggNOG:NOG323483 HOGENOM:HOG000007179
            InterPro:IPR012879 PANTHER:PTHR12883 Pfam:PF07946 OMA:FAVGTKK
            GeneTree:ENSGT00390000013997 EMBL:Z35604 PIR:T27676
            RefSeq:NP_497788.1 ProteinModelPortal:Q23382 DIP:DIP-24918N
            IntAct:Q23382 MINT:MINT-1041862 STRING:Q23382 PaxDb:Q23382
            EnsemblMetazoa:ZK1058.4.1 EnsemblMetazoa:ZK1058.4.2 GeneID:175505
            KEGG:cel:CELE_ZK1058.4 UCSC:ZK1058.4.1 CTD:175505 WormBase:ZK1058.4
            InParanoid:Q23382 NextBio:888448 Uniprot:Q23382
        Length = 442

 Score = 149 (57.5 bits), Expect = 8.6e-10, P = 8.6e-10
 Identities = 31/88 (35%), Positives = 47/88 (53%)

Query:     7 QDTIDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVXXXXXXXXX 66
             QD    M+ ++  VFY +D+ ++ +LS++AK KA++ R   E+AFLK TH          
Sbjct:   338 QDEESVME-ILNLVFYLIDKARKMKLSKDAKVKAERRRKEFEDAFLKQTHQFRQEAAQAR 396

Query:    67 XXXXXXXXXXXIMQEEDPEKQRRWEEKE 94
                        +M E DPE+Q+R E KE
Sbjct:   397 REEKTRERKQKLMDESDPERQKRLEAKE 424


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.131   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      114        77   0.00091  102 3  11 22  0.36    29
                                                     29  0.50    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  459 (49 KB)
  Total size of DFA:  89 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.78u 0.12s 8.90t   Elapsed:  00:00:00
  Total cpu time:  8.78u 0.12s 8.90t   Elapsed:  00:00:00
  Start:  Thu Aug 15 11:15:29 2013   End:  Thu Aug 15 11:15:29 2013

Back to top