RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18056
(114 letters)
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 93.9 bits (234), Expect = 2e-24
Identities = 36/97 (37%), Positives = 57/97 (58%)
Query: 5 SIQDTIDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAA 64
++ ++++ PL+ V Y +D++ +LS E K DK R EE LK R E A
Sbjct: 226 KSKEDLEDLLPLLNLVLYLVDKLANLKLSPEVLRKVDKTREEEEEKILKAAEEERQEEAQ 285
Query: 65 LRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKK 101
+KEEK++ E+E + + PE+QR+ EEKE K+Q +K
Sbjct: 286 EKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 30.1 bits (67), Expect = 0.26
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 31 RLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRW 90
+ + EAK KA++ + + + A K +A AA + E E E ++ + ++++
Sbjct: 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
Query: 91 EEKEAKRQMKKKTPKMKQ 108
E K+ KKK + K+
Sbjct: 1375 EAKKKADAAKKKAEEKKK 1392
Score = 26.6 bits (58), Expect = 3.9
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 31 RLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEED---PEKQ 87
+ + EAK KA++++ + +E +A+ A + EEK++ ++ K EE E +
Sbjct: 1391 KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
Query: 88 RRWEEKEAKRQMKKKTPKMKQ 108
++ EE + + KKK + K+
Sbjct: 1451 KKAEEAKKAEEAKKKAEEAKK 1471
Score = 26.3 bits (57), Expect = 4.9
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 35 EAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKE 94
E KAD+ + + EEA K +A A + +E ++ E+ K E ++ + ++
Sbjct: 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
Query: 95 AKRQMKKKTPKMKQ 108
K + KKK ++K+
Sbjct: 1540 KKAEEKKKADELKK 1553
Score = 26.3 bits (57), Expect = 5.1
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 33 SREAKSKADKNRHRVEEAFLKTTHVAR-AEAAALRKEEKRRLEKEKIMQEEDPEKQRRWE 91
+ A +A+ + E A K + A+AA + EEK++ ++ K EED +K +
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK 1411
Query: 92 EKEAKRQMKKKTPKMKQLKVKA 113
+ A ++ + K + K KA
Sbjct: 1412 KAAAAKKKADEAKKKAEEKKKA 1433
Score = 25.5 bits (55), Expect = 9.4
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 31 RLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRW 90
+ + EAK KA++ + + +EA +A+ A +E K+ E +K + + ++ ++
Sbjct: 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
Query: 91 EEKEAKRQMKKKTPKMKQLKVK 112
EEK+ ++KK K + K
Sbjct: 1543 EEKKKADELKKAEELKKAEEKK 1564
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 29.1 bits (65), Expect = 0.44
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Query: 10 IDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKE- 68
I + + +F F + F R + + K+ +V A L TT +A A A +K
Sbjct: 745 IRGSQAIPKFCFNEDLEEEEFEYPRMYEEASGKSVRKVNTAVLSTT--IKAAARAKQKPK 802
Query: 69 EKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKKKTPKMKQLKVK 112
EK +KE ++ E + + + + P + +K K
Sbjct: 803 EKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKK 846
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 29.1 bits (65), Expect = 0.46
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 20/108 (18%)
Query: 17 MQFVFYTLDRV------KRFRLSREAKSKADKNRHR---VEEAFLKTTHVARAEAAALR- 66
M FVF+ V K F + E + D++ +EE + +A+ EA R
Sbjct: 214 MDFVFFNGQNVYDNNDHKDFCV--EIEGGMDEHSFEDFLLEEKRRELEKLAKEEAERERQ 271
Query: 67 KEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKKKTPKMKQLKVKAL 114
EE+RR E+EK E D +AK +++K+ K++ L KA
Sbjct: 272 AEEQRRREEEKAAMEAD--------RAQAKAEVEKRREKLQNLLKKAS 311
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 28.9 bits (64), Expect = 0.51
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 12 EMKPLMQFVFYTLDRVKRFRLSREAKSKADKNR---HRVEEAFLKTTHVARAEAAALRKE 68
EMK L + L+R +R RL RE + ++ R R+E L+ + R L +E
Sbjct: 451 EMKILEKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERE 510
Query: 69 EKRRLEKEKIMQEEDPEKQRR 89
RLE++++ EK RR
Sbjct: 511 RVDRLERDRL------EKARR 525
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 29.1 bits (65), Expect = 0.52
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
Query: 64 ALR--KEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKK-----------KTPKMKQLK 110
+LR EE+ L+ + ++ED + EE++ +K K PK+ + +
Sbjct: 536 SLRNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEE 595
Query: 111 VKAL 114
AL
Sbjct: 596 EAAL 599
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 28.3 bits (64), Expect = 1.0
Identities = 15/82 (18%), Positives = 37/82 (45%)
Query: 31 RLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRW 90
+L E + K +K + ++ + A+ +KE +++ + +Q+ +
Sbjct: 548 KLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAH 607
Query: 91 EEKEAKRQMKKKTPKMKQLKVK 112
E EA++++ K K ++ K K
Sbjct: 608 ELIEARKRLNKANEKKEKKKKK 629
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 27.6 bits (62), Expect = 1.4
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 17/72 (23%)
Query: 34 REAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKR-RLEKEKIMQEEDPEKQRRWEE 92
R+AK++ R +E +AE A R E ++ RLE+EK ++ R ++
Sbjct: 432 RQAKAEI---RAIEQEK-------KKAEEAKARFEARQARLEREKA------AREARHKK 475
Query: 93 KEAKRQMKKKTP 104
R K K
Sbjct: 476 AAEARAAKDKDA 487
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 27.3 bits (61), Expect = 1.5
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 64 ALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKKK 102
A K+ K E E + + K++ KKK
Sbjct: 157 AEWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKK 195
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 27.6 bits (61), Expect = 1.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 64 ALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKKK 102
A R + + MQE+D EKQ + E K ++ K
Sbjct: 2 AYRNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDK 40
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 27.6 bits (62), Expect = 1.6
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 23 TLDRVKRFRLSREA----KSKADKNRHRVEEAFLKTTHVARAEAAALRKEE--KRRLEKE 76
T + ++ S++A K +K + EE + A A +EE K + E+E
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 77 KIMQEEDPEKQRRWEEKEAKRQM 99
K +EE+ E+++ EE++ K+Q
Sbjct: 455 KEEEEEEAEEEKEEEEEKKKKQA 477
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 27.3 bits (60), Expect = 1.8
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 14/65 (21%)
Query: 36 AKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEA 95
A SK K R EEA K A+ EA +EE+ R EKEK E++ E++R E+EA
Sbjct: 573 ASSKLAKKR---EEAVEK----AKREAEQKAREERER-EKEK---EKERERER---EREA 618
Query: 96 KRQMK 100
+R K
Sbjct: 619 ERAAK 623
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 26.9 bits (60), Expect = 2.5
Identities = 11/59 (18%), Positives = 28/59 (47%)
Query: 46 RVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKKKTP 104
R+E+ + + L++E++ + ++ + +KQ ++KE ++ K K P
Sbjct: 534 RIEDKPDGPSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIP 592
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 26.5 bits (59), Expect = 3.3
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 58 ARAEAAALRKEEKRRLEKEKIMQEEDPEKQRR-WEEKEAK 96
AR +A L +E + RLE++K+ + E+QR E +A+
Sbjct: 668 ARHQAELLEQEARGRLERQKMHDKAKAEEQRTKLLELQAE 707
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 26.4 bits (59), Expect = 3.4
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 34 REAKSKADKNRHRVEE--AFLKTTHVARAEAAALRKEEKRRLE 74
RE K + + ++ TH+ ++A +L E+RR+E
Sbjct: 107 REKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVE 149
>gnl|CDD|221371 pfam12004, DUF3498, Domain of unknown function (DUF3498). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 433 to 538 amino acids in length. This domain is
found associated with pfam00616, pfam00168. This domain
has two conserved sequence motifs: DLQ and PLSFQNP.
Length = 489
Score = 26.2 bits (57), Expect = 4.1
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 35 EAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKE 94
E + + E+ + R L + E+R L +E+ MQ+ E Q R E+ E
Sbjct: 356 EENREEGTQAEKYEQEIARLKERLRVSVRRLEEYERRLLGQEQQMQKLLQEYQARLEDSE 415
Query: 95 A--KRQMKKKTPKMK 107
+RQ ++K +MK
Sbjct: 416 ERLRRQQEEKDSQMK 430
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 26.3 bits (59), Expect = 4.3
Identities = 19/81 (23%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 35 EAKSKADKNRHRVE-EAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEK 93
EAK + K R+ E E + + + E L+KEE + E + + E+ +++ E +
Sbjct: 61 EAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELE 120
Query: 94 EAKRQMKKKTPKMKQLKVKAL 114
+ +++++KK ++++L + L
Sbjct: 121 QKQQELEKKEEELEELIEEQL 141
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 26.0 bits (57), Expect = 4.7
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 44 RHRVEEAFLKTTHVARAEAAALRKEE---KRRLEKEKIMQEEDPEKQRRWEEKEAKRQMK 100
E A +K T A A RK+E KRR + +I +E E+ A+R
Sbjct: 324 ELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAV 383
Query: 101 K 101
K
Sbjct: 384 K 384
>gnl|CDD|214617 smart00323, RasGAP, GTPase-activator protein for Ras-like GTPases.
All alpha-helical domain that accelerates the GTPase
activity of Ras, thereby "switching" it into an "off"
position. Improved domain limits from structure.
Length = 344
Score = 26.1 bits (58), Expect = 4.9
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 13 MKPLMQFVFYTLDRVKRF--RLSREAKSKADKNRHRVE---EAFLKTTHVARAEAAALRK 67
M+PL F+ DRVK F LS + DK + AL++
Sbjct: 256 MEPLNDFLLSHKDRVKDFLDELSSVPEILVDKVSDSTTISGRELSLLHSLLLENGDALKR 315
Query: 68 EEKRRLEKEKIM 79
E K++
Sbjct: 316 ELNNEDPLGKLL 327
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 26.0 bits (57), Expect = 5.0
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 75 KEKIMQEEDPEKQRRWEEKEAKRQMKKKTPKMKQLKVK 112
++KI+ EE+ E++++ EEK ++++KK K+ K K
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAK 46
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 25.9 bits (57), Expect = 5.1
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 30 FRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRR 89
+++ RE S D+ EE+ T + + + E K + ++E + + EK
Sbjct: 85 WKIFRELSSSDDEEEETEEES---TDETEQEDPPETKTESKEKKKREVPKPKTEKEK--- 138
Query: 90 WEEKEAKRQMKKKTPKM 106
K ++ K PK+
Sbjct: 139 --PKTEPKKPKPSKPKL 153
>gnl|CDD|220635 pfam10221, DUF2151, Cell cycle and development regulator. This is
a set of proteins conserved from worms to humans. The
proteins are a PAN GU kinase substrate, Mat89Bb,
essential for S-M cycles of early Drosophila
embryogenesis, Xenopus embryonic cell cycles and
morphogenesis, and cell division in cultured mammalian
cells.
Length = 692
Score = 26.0 bits (57), Expect = 5.4
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 35 EAKSKADKNRHRVEEAFLK---TTHVARAEAAALR-KEEKRRLE--KEKIMQEEDPEKQR 88
E +A E F K T E + R K + E + E EK++
Sbjct: 573 EEDDEAGDKMFVKEPFFEKTRGTADTEEGEGSGDREKNMLKEFEKYTDSPDSPEPLEKKK 632
Query: 89 RWEEKEAKRQMKKKTP 104
+ +E +M KK P
Sbjct: 633 NAKIEELLPEMAKKGP 648
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 25.7 bits (57), Expect = 5.6
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 33 SREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEE 92
+REA+ + + +++ L+ + R +K EK E K ++E E+ ++ EE
Sbjct: 46 AREARRWQLRTQKIMKDTQLRAKRLMREMLLFWKKNEKEERELRKRAEKEALEQAKKEEE 105
Query: 93 -KEAKRQMKK 101
+EAKRQ +K
Sbjct: 106 LREAKRQQRK 115
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 25.8 bits (57), Expect = 7.0
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 58 ARAEAAALRKEEKRRLEKEKIMQ-EEDPEKQRRWEEKE-AKRQMKKKTPKMKQLK 110
E L+ + + E + + EE E+Q EEKE AK Q K K K K
Sbjct: 1114 KEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASK 1168
>gnl|CDD|178354 PLN02753, PLN02753, triacylglycerol lipase.
Length = 531
Score = 25.4 bits (55), Expect = 7.6
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 62 AAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKKKTPKMKQLK 110
+A + + E+ R E++ ++ +E W E R+ KKT + ++L+
Sbjct: 56 SAVISRLERERRERQGLLIDEAEGAGELWLTAEDIRRRDKKTEEERRLR 104
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 25.6 bits (56), Expect = 8.8
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 12/42 (28%)
Query: 57 VARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQ 98
+ARA AA E R +Q W E EA R+
Sbjct: 849 LARACAALRDDEAVFR------------RRQDVWREAEAMRR 878
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 25.3 bits (56), Expect = 8.9
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 53 KTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKKKTPKMKQLK 110
K RA+A A E++ EK+K ++ ++R ++E + K + + K L
Sbjct: 204 KAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLA 261
>gnl|CDD|233067 TIGR00641, acid_CoA_mut_N, methylmalonyl-CoA mutase N-terminal
domain. Methylmalonyl-CoA mutase (EC 5.4.99.2)
catalyzes a reversible isomerization between
L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an
adenosylcobalamin cofactor. It may be a homodimer, as in
mitochondrion, or a heterodimer with partially
homologous beta chain that does not bind the
adenosylcobalamin cofactor, as in Propionibacterium
freudenreichii. The most similar archaeal sequences are
separate chains, such as AF2215 abd AF2219 of
Archaeoglobus fulgidus, that correspond roughly to the
first 500 and last 130 residues, respectively of known
methylmalonyl-CoA mutases. This model describes the
N-terminal domain subfamily. In a neighbor-joining tree,
AF2215 branches with a bacterial isobutyryl-CoA mutase,
which is also the same length. Scoring between the noise
and trusted cutoffs are the non-catalytic, partially
homologous beta chains from certain heterodimeric
examples of 5.4.99.2.
Length = 524
Score = 25.5 bits (56), Expect = 9.3
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 43 NRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRR 89
N++++EE V + + +++R+E+ +L +K+ E D EK
Sbjct: 432 NKYQLEEE--DEVEVLKVDNSSVREEQIAKL--KKLRAERDQEKVEA 474
>gnl|CDD|215231 PLN02421, PLN02421, phosphotransferase, alcohol group as
acceptor/kinase.
Length = 330
Score = 25.1 bits (55), Expect = 9.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 71 RRLEKEKIMQEEDPEKQRRWEE 92
+ EK ++ EDPEKQ+++E
Sbjct: 137 KFYEKASTVKFEDPEKQKKYET 158
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.127 0.336
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,861,733
Number of extensions: 533052
Number of successful extensions: 2518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2018
Number of HSP's successfully gapped: 533
Length of query: 114
Length of database: 10,937,602
Length adjustment: 78
Effective length of query: 36
Effective length of database: 7,477,990
Effective search space: 269207640
Effective search space used: 269207640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.0 bits)