RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18056
(114 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.8 bits (70), Expect = 0.072
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 28 KRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKI---MQEEDP 84
K R + V +A+ E L+ E + +K+ ++ +
Sbjct: 872 KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931
Query: 85 EKQRRWEEKEAKRQMKKKTPKMKQLKVK 112
+ QR+ +E+ ++ K KM L++
Sbjct: 932 QLQRKIDEQN--KEYKSLLEKMNNLEIT 957
Score = 27.0 bits (60), Expect = 1.8
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 46 RVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKK 101
R + + H + +R R + Q + AKR++KK
Sbjct: 855 RNKYQMMLREHKSIIIQKHVRGWLARVHYHRT--LKAIVYLQCCYRRMMAKRELKK 908
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.0 bits (65), Expect = 0.34
Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 25 DRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKE---KIMQE 81
++ + E ++A++ R R+ + + A + +EE+R + + K MQ+
Sbjct: 896 LLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ 955
Query: 82 EDPEKQRRWEEKEAKRQMKKKTPKMKQLKVKAL 114
+ + + + EE+EA RQ + K+K +
Sbjct: 956 QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.37
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 80 QEEDPEKQRRWEEKEAKRQMKK---KTPKMKQLKVKA 113
++PE R+W E++ KR + ++ + KA
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKA 116
Score = 26.7 bits (58), Expect = 1.6
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 58 ARAEAAALRK---EEKRRLEKEKIMQEEDPEKQRRWEEKEAK 96
E ++RK E+++RL++ + ++ W EK K
Sbjct: 80 LTQEPESIRKWREEQRKRLQE---LDAASKVMEQEWREKAKK 118
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.68
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 13/52 (25%)
Query: 2 GQLSIQDTIDEMKPLMQFVFYTLDR--VKRF------RLSREAKSKADKNRH 45
GQ + D +E++ L Y V LS ++ D +
Sbjct: 162 GQGNTDDYFEELRDL-----YQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
>3ubr_A Cytochrome C-552; DECA-heme, electron transfer, redox, CYMA,
oxidoreductase; HET: HEC; 2.59A {Shewanella oneidensis}
Length = 439
Score = 27.9 bits (61), Expect = 0.84
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 58 ARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAK 96
A+A+A EK EKE ++ P+ +++EA
Sbjct: 400 AKAQAVLGMDMEKMNAEKEAFKKDMLPKWDAEAKKREAT 438
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 26.7 bits (58), Expect = 1.9
Identities = 15/90 (16%), Positives = 35/90 (38%)
Query: 24 LDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEED 83
L+R K S K++ + +++T A+AEA + + + E + +
Sbjct: 688 LERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLK 747
Query: 84 PEKQRRWEEKEAKRQMKKKTPKMKQLKVKA 113
+ E E +R K + ++ + +
Sbjct: 748 AQALAIETEAELERVKKVREMELIYARAQL 777
Score = 25.9 bits (56), Expect = 4.4
Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 25 DRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKE---EKRRLEKEKIMQE 81
D+ + + +E + K +RAEAA + E + +L+ + + E
Sbjct: 695 DQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754
Query: 82 EDPEKQRRWEEKEAKRQMKKKTPKMKQLKVKAL 114
+ E +R + +E + + +++ K + L
Sbjct: 755 TEAELERVKKVREMELIYARAQLELEVSKAQQL 787
Score = 24.8 bits (53), Expect = 9.1
Identities = 16/89 (17%), Positives = 29/89 (32%)
Query: 26 RVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPE 85
+ AK +A + + + ++EA RKE ++
Sbjct: 663 EITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNA 722
Query: 86 KQRRWEEKEAKRQMKKKTPKMKQLKVKAL 114
K EA R + + +LK +AL
Sbjct: 723 KAEAESRAEAARIEGEGSVLQAKLKAQAL 751
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 3.1
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 8/26 (30%)
Query: 96 KRQMKKKTPKMK--------QLKVKA 113
K+ +KK +K L +KA
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 3.5
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 48 EEAFLK---TTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRR 89
E+AF+ V + L KEE + I+ +D
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEI-----DHIIMSKDAVSGTL 65
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid
synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A*
3tdc_A*
Length = 793
Score = 25.6 bits (56), Expect = 5.3
Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 9/117 (7%)
Query: 7 QDTIDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALR 66
+D + ++ L ++++ LS + + + E+ L H A L
Sbjct: 577 KDLVKTIRRLDPISKKLVEQLGVSELSDTDRKELEGQLKAREDLLLPMYHQVALHFADLH 636
Query: 67 KEEKRRLEKEKIMQEEDPEKQRRW---------EEKEAKRQMKKKTPKMKQLKVKAL 114
R LEK I + + R + E + K+++ + P++ + V+++
Sbjct: 637 DTAGRMLEKGVIYDILEWKTARSFLYWRLRRLLLESQVKQEVLRACPELSHMHVQSM 693
>2han_B Ecdysone receptor; transcription regulation, transcription factor,
DNA-binding, nuclear protein, nuclear receptor, zinc
finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
PDB: 1r0o_B 1r0n_B
Length = 119
Score = 24.5 bits (53), Expect = 6.8
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 75 KEKIMQEEDPEKQRRWEEKEAKRQMKKKTPKMKQ 108
E ++ E +RR ++ + ++ +P +
Sbjct: 78 PECVVPENQCAMKRREKKAQKEKDKMTTSPSSQH 111
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 24.5 bits (54), Expect = 8.5
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 42 KNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEK 77
K R V++AF R + K+ K++ +K K
Sbjct: 148 KTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSK 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.127 0.336
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,719,927
Number of extensions: 99402
Number of successful extensions: 564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 148
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)