RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18056
         (114 letters)



>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional
          dehydrogenase/ferrochelatase Met8p, dimerisation and
          C-terminal domains {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 123

 Score = 23.7 bits (51), Expect = 5.8
 Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 44 RHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEK 93
          R  +   F +   +A  +A     E +R + +     ++D + +  W  +
Sbjct: 28 RDEIRNLFTQMGDLALEDAVVKLGELRRGI-RLLAPDDKDVKYRMDWARR 76


>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1449

 Score = 24.0 bits (51), Expect = 5.8
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 10  IDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAA----L 65
           +DE   LM+      D  KRF                V      T  V+R         +
Sbjct: 114 LDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTI 173

Query: 66  RKEEKRRL---EKEKIMQEEDPEKQRRWEEKEAKRQMKKKTPK 105
           RK+  + +   +K++   + D  + R    +E     K  + K
Sbjct: 174 RKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVK 216


>d1giqa1 d.166.1.1 (A:3-209) Enzymatic component (Ia) of iota-toxin
           {Clostridium perfringens [TaxId: 1502]}
          Length = 207

 Score = 23.3 bits (50), Expect = 8.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 81  EEDPEKQRRWEEKEAKRQMKKKTPKMKQL 109
            +D E   +WE+KEA+R  K      K+ 
Sbjct: 8   LKDKENAIQWEKKEAERVEKNLDTLEKEA 36


>d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 155

 Score = 23.0 bits (49), Expect = 8.5
 Identities = 6/25 (24%), Positives = 15/25 (60%)

Query: 82  EDPEKQRRWEEKEAKRQMKKKTPKM 106
           +  E++R +E   A+++ +KK   +
Sbjct: 131 QTEEEKRLYETAPARKENRKKRAAL 155


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.127    0.336 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 408,044
Number of extensions: 18203
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 46
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)