RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18058
(2301 letters)
>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin
(EF-Hand superfamily) [Cytoskeleton].
Length = 612
Score = 208 bits (530), Expect = 2e-56
Identities = 128/413 (30%), Positives = 185/413 (44%), Gaps = 16/413 (3%)
Query: 46 LADERESVQKKTFQKWVNSHLVRVSC-RIGDLYVDLRDGKMLLKLLEVLSGERLPRPTKG 104
A + + VQKKTF KW N L+ GDL DL+DG L +LLE L + +
Sbjct: 2 EAKKWQKVQKKTFTKWTNEKLISGGQKEFGDLDTDLKDGVKLAQLLEALQKDNAGEYNET 61
Query: 105 K-MRIHCLENVDKALQFLREQRVHLENMGSHDIVDGNPRLSLGLIWTIILRFQIQDITIE 163
RIH +ENV L+F++ + V L N+G DIVDGNP+L LGLIW++I R I I E
Sbjct: 62 PETRIHVMENVSGRLEFIKGKGVKLFNIGPQDIVDGNPKLILGLIWSLISRLTIATINEE 121
Query: 164 ETDNQETKSAKDALLLWCQMKTAGYHN-VNVRNFTTSWRDGLAFNAIIHKHRPDLIQFEK 222
+ LLLWC T GY V+ +F SWRDGLAF+A+IH RPD +
Sbjct: 122 -----GELTKHINLLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNV 176
Query: 223 LS--KSNAIYNLNNAFTVAEDKLGLTKLLDAEDIF-VEQPDEKSIITYVVTYYHYFSKMK 279
L K N N AF A +G+ +L+ EDI V PDE+SI+TYV Y F ++
Sbjct: 177 LDLQKKNKALNNFQAFENANKVIGIARLIGVEDIVNVSIPDERSIMTYVSWYIIRFGLLE 236
Query: 280 QETVQGKRIGKVVGIAMDNDRMIHEYESLTSDLLRWIQETIASLGDRQFANSLVGVQQQL 339
+ + R+ +++ ++ YE + LL I A+ F+ + +
Sbjct: 237 KIDIALHRVYRLLEADETLIQLRLPYEIILLRLLNLIHLKQANWKVVNFSKDVSDGENYT 296
Query: 340 LQFNNYRTVEKPPKFVEKGNLEVLLFTLQSKMRANNQKPYTPKEGKMISDINKAWERLEK 399
N + +E +L L + + + Y P G D+
Sbjct: 297 DLLNQLNALCS-RAPLETTDLHSLAGQILQNAEKYDCRKYLPPAGNPKLDLAFVAHLFNT 355
Query: 400 AEHERELALREELIRQEKLEQLAARFNRKASMRETWLSENQRLVSQDNFGFDL 452
H + L EE ++E+ A +A + WL+ N DL
Sbjct: 356 --HPGQEPLEEEEKP--EIEEFDAEGEFEARVFTFWLNSLDVSPEITNLFGDL 404
Score = 36.5 bits (84), Expect = 0.18
Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 26/162 (16%)
Query: 49 ERESVQKKTFQKWVNSHLVRVSCRIGDLYVDLRDGKMLLKLLEVLSGE---------RLP 99
E E+ + F W+NS V S I +L+ DLRD +LL+ L + P
Sbjct: 378 EFEA---RVFTFWLNSLDV--SPEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQP 432
Query: 100 RPTKGKMRIHCLENVDKALQFLREQRVHLENMGSHDIVDGNPRLSLGLIWTIILRFQIQD 159
+ R EN + A+ + L + +I+DG RL L L+W Q+
Sbjct: 433 ASGIEENRFKAFENENYAVDLGITEGFSLVGIKGLEILDGI-RLKLTLVW------QVLR 485
Query: 160 ITIEETDNQETKSAK---DALLLWC--QMKTAGYHNVNVRNF 196
++ K D+ L + G +R+F
Sbjct: 486 SNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSF 527
>gnl|CDD|241307 cd10571, PH_beta_spectrin, Beta-spectrin pleckstrin homology (PH)
domain. Beta spectrin binds actin and functions as a
major component of the cytoskeleton underlying cellular
membranes. Beta spectrin consists of multiple spectrin
repeats followed by a PH domain, which binds to
inositol-1,4,5-trisphosphate. The PH domain of
beta-spectrin is thought to play a role in the
association of spectrin with the plasma membrane of
cells. PH domains have diverse functions, but in general
are involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but all
have a common fold, which is electrostatically polarized.
Less than 10% of PH domains bind phosphoinositide
phosphates (PIPs) with high affinity and specificity. PH
domains are distinguished from other PIP-binding domains
by their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH domain
proteins to the plasma membrane. A few display strong
specificity in lipid binding. Any specificity is usually
determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 105
Score = 153 bits (388), Expect = 3e-43
Identities = 59/108 (54%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Query: 2157 MEGTLVRKHEWEAIAKRASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFEL 2216
MEG L RKHE E+ K+ASNRSW K++ L+G L FYKDQK+A S Y E P L
Sbjct: 1 MEGFLERKHELESGGKKASNRSWKKVYCVLKGQELSFYKDQKAAASES---YAGEPPLNL 57
Query: 2217 RGGSAQVADDYSKKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNV 2264
G +VA DY KKKHVFR++ +G+EYLFQAK++EEMN WV L
Sbjct: 58 SGAVCEVASDYKKKKHVFRLRLSDGSEYLFQAKDEEEMNDWVQKLQAA 105
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved
in cytoskeletal structure; family members include
spectrin, alpha-actinin and dystrophin; the spectrin
repeat forms a three helix bundle with the second helix
interrupted by proline in some sequences; the repeats
are independent folding units; tandem repeats are found
in differing numbers and arrange in an antiparallel
manner to form dimers; the repeats are defined by a
characteristic tryptophan (W) residue in helix A and a
leucine (L) at the carboxyl end of helix C and separated
by a linker of 5 residues; two copies of the repeat are
present here.
Length = 213
Score = 134 bits (339), Expect = 3e-35
Identities = 81/210 (38%), Positives = 137/210 (65%), Gaps = 2/210 (0%)
Query: 642 QLYWDMADEENWIKEKEQIVSTGDIGHDLTTINLLLSKHKALEDEIQAHESQLMSVIAVG 701
Q D + E W+ EKE+++S+ D G DL ++ LL KH+ALE E+ AHE ++ ++ +G
Sbjct: 4 QFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELG 63
Query: 702 DELVNQQHFGADRIRGRLQDTMAMWQNLLDLAAFRRKRLEEAVDFHQFFADAVDVDIWML 761
++L+ + H A+ I+ RL++ W+ L +LA RR+RLEEA+D QFF DA D++ W+
Sbjct: 64 EQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLE 123
Query: 762 DTVRLVSSEDVGRDEANVQSLLKKHKDVTEELKNYASTIEALRNQASQLGD--QDKESPE 819
+ ++SED+G+D +V+ LLKKHK++ EEL+ + +++L A +L + E
Sbjct: 124 EKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEE 183
Query: 820 VLERLASIEFRYKELLELAKLRKQRLLDAL 849
+ E+L + R++ELLELA+ R+++L +AL
Sbjct: 184 IEEKLEELNERWEELLELAEERQKKLEEAL 213
Score = 132 bits (333), Expect = 2e-34
Identities = 81/214 (37%), Positives = 129/214 (60%), Gaps = 2/214 (0%)
Query: 1596 KAQQYLFDASEAESWMSEQELYMMVEDRGKDEISTQNLMKKHETLELAVEDYADTIRQLG 1655
K QQ+L DA E E+W+SE+E + D G D S + L+KKHE LE + + + + L
Sbjct: 1 KLQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALN 60
Query: 1656 ETARQLTSEMHPESDQIALKQSQVDKLYAGLKDLAGERRAKLDEALKLFMLNREVDDLEQ 1715
E QL E HP++++I + ++++ + L++LA ERR +L+EAL L R+ DDLEQ
Sbjct: 61 ELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQ 120
Query: 1716 WIAEREVVAGSHELGQDYDHVTLLWERFKEFDRDTEAIGTERVAAVNGIADQLIAAGHSD 1775
W+ E+E S +LG+D + V L ++ KE + + EA R+ ++N +A++L+ GH D
Sbjct: 121 WLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHE-PRLKSLNELAEELLEEGHPD 179
Query: 1776 S-ATIAEWKDGLNEAWQDLLELIETRTQMLVASR 1808
+ I E + LNE W++LLEL E R + L +
Sbjct: 180 ADEEIEEKLEELNERWEELLELAEERQKKLEEAL 213
Score = 131 bits (331), Expect = 3e-34
Identities = 82/219 (37%), Positives = 132/219 (60%), Gaps = 7/219 (3%)
Query: 527 QLQQSFQEMLYILDSMEELKMRLLSDDYGKHLMGVEDLLQKHSLVEADINVLGERVKSVV 586
+LQQ ++ + + E + L S DYG L VE LL+KH +EA++ ERV+++
Sbjct: 1 KLQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALN 60
Query: 587 QQSQRFLDEETNEGFRPCDPAIIVERVQQLEDAYSELVKLAVERRARLEESRKLWQLYWD 646
+ ++ ++E D I ER+++L + EL +LA ERR RLEE+ L Q + D
Sbjct: 61 ELGEQLIEE------GHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRD 114
Query: 647 MADEENWIKEKEQIVSTGDIGHDLTTINLLLSKHKALEDEIQAHESQLMSVIAVGDELVN 706
D E W++EKE +++ D+G DL ++ LL KHK LE+E++AHE +L S+ + +EL+
Sbjct: 115 ADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLE 174
Query: 707 QQHFGADR-IRGRLQDTMAMWQNLLDLAAFRRKRLEEAV 744
+ H AD I +L++ W+ LL+LA R+K+LEEA+
Sbjct: 175 EGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEAL 213
Score = 129 bits (325), Expect = 2e-33
Identities = 67/215 (31%), Positives = 123/215 (57%), Gaps = 4/215 (1%)
Query: 958 QTFHIECRETVSWIEDKKRILQSTDSLEMDLTGIMTLQRRLSGMERDLAAIQAKLDSLEA 1017
Q F + E +W+ +K+ +L STD + DL + L ++ +E +LAA + ++++L
Sbjct: 3 QQFLRDADELEAWLSEKEELLSSTDYGD-DLESVEALLKKHEALEAELAAHEERVEALNE 61
Query: 1018 EAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKERDAKLEEAGDLHRFLRDLDHFQVW 1077
+ +E +AE I+ER++++ WE+L ++ +ER +LEEA DL +F RD D + W
Sbjct: 62 LGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQW 121
Query: 1078 LTKTQTDVASEDTPSSLADAEKLLNQHQAIREEIDNYTEDYKKMMDYGEKVTAEPSTHDD 1137
L + + +ASED L E+LL +H+ + EE++ + K + + E++ E D
Sbjct: 122 LEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDAD 181
Query: 1138 PQYMFLRERLKALRDGWEELHKMWENRQQLLSQSL 1172
+ + E+L+ L + WEEL ++ E RQ+ L ++L
Sbjct: 182 EE---IEEKLEELNERWEELLELAEERQKKLEEAL 213
Score = 127 bits (321), Expect = 7e-33
Identities = 78/213 (36%), Positives = 131/213 (61%), Gaps = 1/213 (0%)
Query: 1490 EAYQFRRDIEDEKLWIAEKLPSAKSTEYGNSLFNVHMLKKKNQSLAKEIDNHEPRINLIC 1549
+ QF RD ++ + W++EK ST+YG+ L +V L KK+++L E+ HE R+ +
Sbjct: 1 KLQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALN 60
Query: 1550 NNGRKLIDEGHEDSAEFTSLIEDLMDRWQQLKKAVDERRSKLIQSEKAQQYLFDASEAES 1609
G +LI+EGH D+ E +E+L RW++L++ +ERR +L ++ QQ+ DA + E
Sbjct: 61 ELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQ 120
Query: 1610 WMSEQELYMMVEDRGKDEISTQNLMKKHETLELAVEDYADTIRQLGETARQLTSEMHPES 1669
W+ E+E + ED GKD S + L+KKH+ LE +E + ++ L E A +L E HP++
Sbjct: 121 WLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDA 180
Query: 1670 -DQIALKQSQVDKLYAGLKDLAGERRAKLDEAL 1701
++I K ++++ + L +LA ER+ KL+EAL
Sbjct: 181 DEEIEEKLEELNERWEELLELAEERQKKLEEAL 213
Score = 123 bits (310), Expect = 2e-31
Identities = 64/207 (30%), Positives = 120/207 (57%), Gaps = 1/207 (0%)
Query: 1389 HQTCDDIDSWMNELEKQIENEDTGSDLASVNILMQKQQMIETQMAVKAKQVSELETQAEI 1448
+ D++++W++E E+ + + D G DL SV L++K + +E ++A ++V L E
Sbjct: 6 LRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQ 65
Query: 1449 LQKTVPDKMEEIVVKKSAVEQRFEKIKEPLLARQRALEKKKEAYQFRRDIEDEKLWIAEK 1508
L + EEI + + QR+E+++E R++ LE+ + QF RD +D + W+ EK
Sbjct: 66 LIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEK 125
Query: 1509 LPSAKSTEYGNSLFNVHMLKKKNQSLAKEIDNHEPRINLICNNGRKLIDEGHEDS-AEFT 1567
+ S + G L +V L KK++ L +E++ HEPR+ + +L++EGH D+ E
Sbjct: 126 EAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIE 185
Query: 1568 SLIEDLMDRWQQLKKAVDERRSKLIQS 1594
+E+L +RW++L + +ER+ KL ++
Sbjct: 186 EKLEELNERWEELLELAEERQKKLEEA 212
Score = 121 bits (306), Expect = 7e-31
Identities = 71/212 (33%), Positives = 121/212 (57%), Gaps = 2/212 (0%)
Query: 851 LYKLFSEADGVQQWIGEKDRMLATMVPGKDIEDVEIMKHRYDGFDKEMNANASRVAVVNQ 910
L + +AD ++ W+ EK+ +L++ G D+E VE + +++ + E+ A+ RV +N+
Sbjct: 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNE 61
Query: 911 LARQLLHVEHPNSEQIVTRQNQLNHDWAGLREKAEGKRDELNSAHGVQTFHIECRETVSW 970
L QL+ HP++E+I R +LN W LRE AE +R L A +Q F + + W
Sbjct: 62 LGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQW 121
Query: 971 IEDKKRILQSTDSLEMDLTGIMTLQRRLSGMERDLAAIQAKLDSLEAEAVA-IEKEHPEE 1029
+E+K+ L S D L DL + L ++ +E +L A + +L SL A +E+ HP+
Sbjct: 122 LEEKEAALASED-LGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDA 180
Query: 1030 AEAIRERIKQIRIIWEQLTQMLKERDAKLEEA 1061
E I E+++++ WE+L ++ +ER KLEEA
Sbjct: 181 DEEIEEKLEELNERWEELLELAEERQKKLEEA 212
Score = 121 bits (304), Expect = 1e-30
Identities = 57/211 (27%), Positives = 102/211 (48%), Gaps = 3/211 (1%)
Query: 1809 ELHKFFHDCKDILGRISEKHHAM-SDELGRDAGSVNTLQRKHQNFLQDLQTLQSQVQQIC 1867
+L +F D ++ +SEK + S + G D SV L +KH+ +L + +V+ +
Sbjct: 1 KLQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALN 60
Query: 1868 NESAKLQASYAGEKAKEITNREAEVVNAWASLQNACDARKQKLGDTGDLFKFLIMVRTLM 1927
+L + A+EI R E+ W L+ + R+Q+L + DL +F L
Sbjct: 61 ELGEQLIEEGHPD-AEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLE 119
Query: 1928 LWMDDVVRQMNTSEKARDVSGVELLMNNHQSLKAEIDTREDNFTACISLGKELLSRNHYA 1987
W+++ + + + +D+ VE L+ H+ L+ E++ E + L +ELL H
Sbjct: 120 QWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPD 179
Query: 1988 S-NEIKEKLVGLSNQRNALLHRWEERWENLQ 2017
+ EI+EKL L+ + LL EER + L+
Sbjct: 180 ADEEIEEKLEELNERWEELLELAEERQKKLE 210
Score = 121 bits (304), Expect = 1e-30
Identities = 56/212 (26%), Positives = 124/212 (58%), Gaps = 2/212 (0%)
Query: 1174 LQMFNRDAKQAEVLLSQQEHVLSKDETPVNLEQVENLIKRHEAFLTTMEANDDKINGVVQ 1233
LQ F RDA + E LS++E +LS + +LE VE L+K+HEA + A+++++ + +
Sbjct: 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNE 61
Query: 1234 FADRLNDEDHYAADKVKKKADNINDRRNANKERAHQQMETLKDQLQLHQFLQDCEELGEW 1293
++L +E H A++++++ + +N R +E A ++ + L++ L L QF +D ++L +W
Sbjct: 62 LGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQW 121
Query: 1294 VQEKKFTAQDETY-RSAKTVHSKWTRHQAFEAEIASNKDRLLRVQQSGSELMKEKPELAE 1352
++EK+ E + ++V +H+ E E+ +++ RL + + EL++E A+
Sbjct: 122 LEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDAD 181
Query: 1353 L-IGPKISDLGQQFDDLETTTKDKGERLFDSN 1383
I K+ +L +++++L +++ ++L ++
Sbjct: 182 EEIEEKLEELNERWEELLELAEERQKKLEEAL 213
Score = 120 bits (303), Expect = 2e-30
Identities = 77/213 (36%), Positives = 128/213 (60%), Gaps = 2/213 (0%)
Query: 745 DFHQFFADAVDVDIWMLDTVRLVSSEDVGRDEANVQSLLKKHKDVTEELKNYASTIEALR 804
QF DA +++ W+ + L+SS D G D +V++LLKKH+ + EL + +EAL
Sbjct: 1 KLQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALN 60
Query: 805 NQASQLGDQDK-ESPEVLERLASIEFRYKELLELAKLRKQRLLDALSLYKLFSEADGVQQ 863
QL ++ ++ E+ ERL + R++EL ELA+ R+QRL +AL L + F +AD ++Q
Sbjct: 61 ELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQ 120
Query: 864 WIGEKDRMLATMVPGKDIEDVEIMKHRYDGFDKEMNANASRVAVVNQLARQLLHVEHPNS 923
W+ EK+ LA+ GKD+E VE + ++ ++E+ A+ R+ +N+LA +LL HP++
Sbjct: 121 WLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDA 180
Query: 924 -EQIVTRQNQLNHDWAGLREKAEGKRDELNSAH 955
E+I + +LN W L E AE ++ +L A
Sbjct: 181 DEEIEEKLEELNERWEELLELAEERQKKLEEAL 213
Score = 118 bits (298), Expect = 9e-30
Identities = 81/215 (37%), Positives = 130/215 (60%), Gaps = 5/215 (2%)
Query: 424 RFNRKASMRETWLSENQRLVSQDNFGFDLGAVEAAAKKHEAIETDIFAYEERVQAVVTVS 483
+F R A E WLSE + L+S ++G DL +VEA KKHEA+E ++ A+EERV+A+ +
Sbjct: 4 QFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELG 63
Query: 484 QELEAEKYHDIDRINARKENVLRLWNYLLELLKARRMRLESSLQLQQSFQEMLYILDSME 543
++L E + D + I R E + + W L EL + RR RLE +L LQQ F++ + +E
Sbjct: 64 EQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLE 123
Query: 544 ELKMRLLSDDYGKHLMGVEDLLQKHSLVEADINVLGERVKSVVQQSQRFLDEETNEGFRP 603
E + L S+D GK L VE+LL+KH +E ++ R+KS+ + ++ L+E P
Sbjct: 124 EKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEG-----HP 178
Query: 604 CDPAIIVERVQQLEDAYSELVKLAVERRARLEESR 638
I E++++L + + EL++LA ER+ +LEE+
Sbjct: 179 DADEEIEEKLEELNERWEELLELAEERQKKLEEAL 213
Score = 116 bits (291), Expect = 6e-29
Identities = 64/212 (30%), Positives = 113/212 (53%), Gaps = 2/212 (0%)
Query: 1702 KLFMLNREVDDLEQWIAEREVVAGSHELGQDYDHVTLLWERFKEFDRDTEAIGTERVAAV 1761
KL R+ D+LE W++E+E + S + G D + V L ++ + + + A ERV A+
Sbjct: 1 KLQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHE-ERVEAL 59
Query: 1762 NGIADQLIAAGHSDSATIAEWKDGLNEAWQDLLELIETRTQMLVASRELHKFFHDCKDIL 1821
N + +QLI GH D+ I E + LN+ W++L EL E R Q L + +L +FF D D+
Sbjct: 60 NELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLE 119
Query: 1822 GRISEK-HHAMSDELGRDAGSVNTLQRKHQNFLQDLQTLQSQVQQICNESAKLQASYAGE 1880
+ EK S++LG+D SV L +KH+ ++L+ + +++ + + +L +
Sbjct: 120 QWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPD 179
Query: 1881 KAKEITNREAEVVNAWASLQNACDARKQKLGD 1912
+EI + E+ W L + R++KL +
Sbjct: 180 ADEEIEEKLEELNERWEELLELAEERQKKLEE 211
Score = 109 bits (274), Expect = 1e-26
Identities = 65/217 (29%), Positives = 123/217 (56%), Gaps = 5/217 (2%)
Query: 1063 DLHRFLRDLDHFQVWLTKTQTDVASEDTPSSLADAEKLLNQHQAIREEIDNYTEDYKKMM 1122
L +FLRD D + WL++ + ++S D L E LL +H+A+ E+ + E + +
Sbjct: 1 KLQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALN 60
Query: 1123 DYGEKVTAEPSTHDDPQYMFLRERLKALRDGWEELHKMWENRQQLLSQSLNLQMFNRDAK 1182
+ GE++ E + ++ERL+ L WEEL ++ E R+Q L ++L+LQ F RDA
Sbjct: 61 ELGEQLIEEGHPDAEE----IQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDAD 116
Query: 1183 QAEVLLSQQEHVLSKDETPVNLEQVENLIKRHEAFLTTMEANDDKINGVVQFADRLNDED 1242
E L ++E L+ ++ +LE VE L+K+H+ +EA++ ++ + + A+ L +E
Sbjct: 117 DLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEG 176
Query: 1243 HYAA-DKVKKKADNINDRRNANKERAHQQMETLKDQL 1278
H A +++++K + +N+R E A ++ + L++ L
Sbjct: 177 HPDADEEIEEKLEELNERWEELLELAEERQKKLEEAL 213
Score = 106 bits (267), Expect = 1e-25
Identities = 62/210 (29%), Positives = 119/210 (56%), Gaps = 2/210 (0%)
Query: 1279 QLHQFLQDCEELGEWVQEKKFTAQDETY-RSAKTVHSKWTRHQAFEAEIASNKDRLLRVQ 1337
+L QFL+D +EL W+ EK+ Y ++V + +H+A EAE+A++++R+ +
Sbjct: 1 KLQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALN 60
Query: 1338 QSGSELMKEKPELAELIGPKISDLGQQFDDLETTTKDKGERLFDSNREVLIHQTCDDIDS 1397
+ G +L++E AE I ++ +L Q++++L +++ +RL ++ + DD++
Sbjct: 61 ELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQ 120
Query: 1398 WMNELEKQIENEDTGSDLASVNILMQKQQMIETQMAVKAKQVSELETQAE-ILQKTVPDK 1456
W+ E E + +ED G DL SV L++K + +E ++ ++ L AE +L++ PD
Sbjct: 121 WLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDA 180
Query: 1457 MEEIVVKKSAVEQRFEKIKEPLLARQRALE 1486
EEI K + +R+E++ E RQ+ LE
Sbjct: 181 DEEIEEKLEELNERWEELLELAEERQKKLE 210
Score = 102 bits (256), Expect = 3e-24
Identities = 62/194 (31%), Positives = 103/194 (53%)
Query: 1915 DLFKFLIMVRTLMLWMDDVVRQMNTSEKARDVSGVELLMNNHQSLKAEIDTREDNFTACI 1974
L +FL L W+ + +++++ D+ VE L+ H++L+AE+ E+ A
Sbjct: 1 KLQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALN 60
Query: 1975 SLGKELLSRNHYASNEIKEKLVGLSNQRNALLHRWEERWENLQLILEVYQFARDAAVAEA 2034
LG++L+ H + EI+E+L L+ + L EER + L+ L++ QF RDA E
Sbjct: 61 ELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQ 120
Query: 2035 WLIAQEPYLMSMELGLTIDEVENLIKKHEAFEKSAIAQEERFSALERLTTFELKELNKRK 2094
WL +E L S +LG ++ VE L+KKH+ E+ A E R +L L L+E +
Sbjct: 121 WLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDA 180
Query: 2095 EEEERKRQEELAAK 2108
+EE ++ EEL +
Sbjct: 181 DEEIEEKLEELNER 194
Score = 65.9 bits (161), Expect = 1e-11
Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 15/225 (6%)
Query: 303 HEYESLTSDLLRWIQETIASLGDRQFANSLVGVQQQLLQFNNYRTVEKPPKFVEKGNLEV 362
++ +L W+ E L + + L V+ L + E L
Sbjct: 3 QQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEA-ELAAHEERVEALNE 61
Query: 363 LLFTLQSKMRANNQKPYTPKEGKMISDINKAWERLEKAEHERELALREELIRQEKLEQLA 422
L L + + ++ + + ++N+ WE L + ER L E L Q
Sbjct: 62 LGEQLIEEGHPDAEEI-----QERLEELNQRWEELRELAEERRQRLEEALDLQ------- 109
Query: 423 ARFNRKASMRETWLSENQRLVSQDNFGFDLGAVEAAAKKHEAIETDIFAYEERVQAVVTV 482
+F R A E WL E + ++ ++ G DL +VE KKH+ +E ++ A+E R++++ +
Sbjct: 110 -QFFRDADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNEL 168
Query: 483 SQELEAEK-YHDIDRINARKENVLRLWNYLLELLKARRMRLESSL 526
++EL E + I + E + W LLEL + R+ +LE +L
Sbjct: 169 AEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEAL 213
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain. The CH domain is
found in both cytoskeletal proteins and signal
transduction proteins. The CH domain is involved in
actin binding in some members of the family. However in
calponins there is evidence that the CH domain is not
involved in its actin binding activity. Most member
proteins have from two to four copies of the CH domain,
however some proteins such as calponin have only a
single copy.
Length = 104
Score = 118 bits (298), Expect = 3e-31
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 174 KDALLLWCQMKTAGYHNVNVRNFTTSWRDGLAFNAIIHKHRPDLIQFEKLSKS--NAIYN 231
+ ALL W Y + V NF RDGLA A+++K RP LI +K++K+ + + N
Sbjct: 1 EKALLRWINEVLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGLIDLKKVNKNRFDKLEN 60
Query: 232 LNNAFTVAEDKLGLTKLLDAEDIFVEQPDEKSIITYVVTYYHYF 275
LN A AE KLG+ K+L+ ED+ VE +EK ++T + + F
Sbjct: 61 LNLALEFAEKKLGVPKVLEPEDL-VEDGNEKLVLTLLAQLFRRF 103
Score = 81.9 bits (203), Expect = 2e-18
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 55 KKTFQKWVNSHLV-RVSCRIGDLYVDLRDGKMLLKLLEVLSGERLPRPTKGKMRIHCLEN 113
+K +W+N L + + + DLRDG L LL L + K R LEN
Sbjct: 1 EKALLRWINEVLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGLIDLKKVNKNRFDKLEN 60
Query: 114 VDKALQFLREQ---RVHLENMGSHDIV-DGNPRLSLGLIWTIILRFQ 156
++ AL+F ++ LE D+V DGN +L L L+ + RF+
Sbjct: 61 LNLALEFAEKKLGVPKVLE---PEDLVEDGNEKLVLTLLAQLFRRFE 104
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which
may be present as a single copy or in tandem repeats
(which increases binding affinity). The CH domain is
found in cytoskeletal and signal transduction proteins,
including actin-binding proteins like spectrin,
alpha-actinin, dystrophin, utrophin, and fimbrin,
proteins essential for regulation of cell shape
(cortexillins), and signaling proteins (Vav).
Length = 107
Score = 98.5 bits (246), Expect = 4e-24
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 172 SAKDALLLWCQMKTAGYHNVNVRNFTTSWRDGLAFNAIIHKHRPDLIQFEK---LSKSNA 228
S K+ LL W Y V + NF+T +DG+A +++ PDLI +K LS+
Sbjct: 1 SQKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKR 60
Query: 229 IYNLNNAFTVAEDKLGLTK-LLDAEDIFVEQPDEKSIITYVVTYYHYF 275
+ N+N A AE KLG+ DAED+ + DEK ++ + + F
Sbjct: 61 LENINLALNFAE-KLGVPVVNFDAEDLVED-GDEKLVLGLLWSLIRKF 106
Score = 87.4 bits (217), Expect = 4e-20
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 53 VQKKTFQKWVNSHLV-RVSCRIGDLYVDLRDGKMLLKLLEVLSGERLP-RPTKGKMRIHC 110
QK+ +W+N L I + DL+DG L KLL LS + + + R
Sbjct: 1 SQKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKR 60
Query: 111 LENVDKALQFLREQRVHLENMGSHDIV-DGNPRLSLGLIWTIILRFQ 156
LEN++ AL F + V + N + D+V DG+ +L LGL+W++I +F
Sbjct: 61 LENINLALNFAEKLGVPVVNFDAEDLVEDGDEKLVLGLLWSLIRKFL 107
>gnl|CDD|215918 pfam00435, Spectrin, Spectrin repeat. Spectrin repeat-domains are
found in several proteins involved in cytoskeletal
structure. These include spectrin, alpha-actinin and
dystrophin. The sequence repeat used in this family is
taken from the structural repeat in reference. The
spectrin domain- repeat forms a three helix bundle. The
second helix is interrupted by proline in some
sequences. The repeats are defined by a characteristic
tryptophan (W) residue at position 17 in helix A and a
leucine (L) at 2 residues from the carboxyl end of helix
C. Although the domain occurs in ultiple repeats along
sequences, the domains are actually stable on their own
- ie they act, biophysically, like domains rather than
repeats that along function when aggregated.
Length = 105
Score = 88.5 bits (220), Expect = 1e-20
Identities = 41/105 (39%), Positives = 71/105 (67%)
Query: 638 RKLWQLYWDMADEENWIKEKEQIVSTGDIGHDLTTINLLLSKHKALEDEIQAHESQLMSV 697
L Q + D D E+WI+EKE ++S+ D G DL ++ LL KHKALE E+ AH+ ++ ++
Sbjct: 1 LLLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEAL 60
Query: 698 IAVGDELVNQQHFGADRIRGRLQDTMAMWQNLLDLAAFRRKRLEE 742
+ ++L+ + H+ ++ I+ RL++ W+ LL+LAA R+++LEE
Sbjct: 61 NELAEKLIAEGHYASEEIQERLEELNERWEQLLELAAERKQKLEE 105
Score = 77.4 bits (191), Expect = 9e-17
Identities = 39/105 (37%), Positives = 62/105 (59%)
Query: 1595 EKAQQYLFDASEAESWMSEQELYMMVEDRGKDEISTQNLMKKHETLELAVEDYADTIRQL 1654
QQ+ DA + ESW+ E+E + ED GKD S Q L+KKH+ LE + + D + L
Sbjct: 1 LLLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEAL 60
Query: 1655 GETARQLTSEMHPESDQIALKQSQVDKLYAGLKDLAGERRAKLDE 1699
E A +L +E H S++I + ++++ + L +LA ER+ KL+E
Sbjct: 61 NELAEKLIAEGHYASEEIQERLEELNERWEQLLELAAERKQKLEE 105
Score = 77.0 bits (190), Expect = 1e-16
Identities = 39/103 (37%), Positives = 56/103 (54%)
Query: 1489 KEAYQFRRDIEDEKLWIAEKLPSAKSTEYGNSLFNVHMLKKKNQSLAKEIDNHEPRINLI 1548
QF RD +D + WI EK S +YG L +V L KK+++L E+ H+ R+ +
Sbjct: 1 LLLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEAL 60
Query: 1549 CNNGRKLIDEGHEDSAEFTSLIEDLMDRWQQLKKAVDERRSKL 1591
KLI EGH S E +E+L +RW+QL + ER+ KL
Sbjct: 61 NELAEKLIAEGHYASEEIQERLEELNERWEQLLELAAERKQKL 103
Score = 75.8 bits (187), Expect = 3e-16
Identities = 36/100 (36%), Positives = 65/100 (65%)
Query: 424 RFNRKASMRETWLSENQRLVSQDNFGFDLGAVEAAAKKHEAIETDIFAYEERVQAVVTVS 483
+F R A E+W+ E + L+S +++G DL +V+A KKH+A+E ++ A+++RV+A+ ++
Sbjct: 5 QFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEALNELA 64
Query: 484 QELEAEKYHDIDRINARKENVLRLWNYLLELLKARRMRLE 523
++L AE ++ + I R E + W LLEL R+ +LE
Sbjct: 65 EKLIAEGHYASEEIQERLEELNERWEQLLELAAERKQKLE 104
Score = 72.4 bits (178), Expect = 5e-15
Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 1701 LKLFMLNREVDDLEQWIAEREVVAGSHELGQDYDHVTLLWERFKEFDRDTEAIGTERVAA 1760
L L R+ DDLE WI E+E + S + G+D + V L ++ K + + A +RV A
Sbjct: 1 LLLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQ-DRVEA 59
Query: 1761 VNGIADQLIAAGHSDSATIAEWKDGLNEAWQDLLELIETRTQML 1804
+N +A++LIA GH S I E + LNE W+ LLEL R Q L
Sbjct: 60 LNELAEKLIAEGHYASEEIQERLEELNERWEQLLELAAERKQKL 103
Score = 71.2 bits (175), Expect = 2e-14
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 745 DFHQFFADAVDVDIWMLDTVRLVSSEDVGRDEANVQSLLKKHKDVTEELKNYASTIEALR 804
QFF DA D++ W+ + L+SSED G+D +VQ+LLKKHK + EL + +EAL
Sbjct: 2 LLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEALN 61
Query: 805 NQASQLGD-QDKESPEVLERLASIEFRYKELLELAKLRKQRLLD 847
A +L S E+ ERL + R+++LLELA RKQ+L +
Sbjct: 62 ELAEKLIAEGHYASEEIQERLEELNERWEQLLELAAERKQKLEE 105
Score = 70.0 bits (172), Expect = 4e-14
Identities = 29/103 (28%), Positives = 56/103 (54%)
Query: 1915 DLFKFLIMVRTLMLWMDDVVRQMNTSEKARDVSGVELLMNNHQSLKAEIDTREDNFTACI 1974
L +F L W+++ +++ + +D+ V+ L+ H++L+AE+ +D A
Sbjct: 2 LLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEALN 61
Query: 1975 SLGKELLSRNHYASNEIKEKLVGLSNQRNALLHRWEERWENLQ 2017
L ++L++ HYAS EI+E+L L+ + LL ER + L+
Sbjct: 62 ELAEKLIAEGHYASEEIQERLEELNERWEQLLELAAERKQKLE 104
Score = 69.7 bits (171), Expect = 5e-14
Identities = 34/101 (33%), Positives = 59/101 (58%)
Query: 851 LYKLFSEADGVQQWIGEKDRMLATMVPGKDIEDVEIMKHRYDGFDKEMNANASRVAVVNQ 910
L + F +AD ++ WI EK+ +L++ GKD+E V+ + ++ + E+ A+ RV +N+
Sbjct: 3 LQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEALNE 62
Query: 911 LARQLLHVEHPNSEQIVTRQNQLNHDWAGLREKAEGKRDEL 951
LA +L+ H SE+I R +LN W L E A ++ +L
Sbjct: 63 LAEKLIAEGHYASEEIQERLEELNERWEQLLELAAERKQKL 103
Score = 67.3 bits (165), Expect = 3e-13
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 958 QTFHIECRETVSWIEDKKRILQSTDSLEMDLTGIMTLQRRLSGMERDLAAIQAKLDSLEA 1017
Q F + + SWIE+K+ +L S D DL + L ++ +E +LAA Q ++++L
Sbjct: 4 QQFFRDADDLESWIEEKEALLSSED-YGKDLESVQALLKKHKALEAELAAHQDRVEALNE 62
Query: 1018 EAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKERDAKLEE 1060
A + E +E I+ER++++ WEQL ++ ER KLEE
Sbjct: 63 LAEKLIAEGHYASEEIQERLEELNERWEQLLELAAERKQKLEE 105
Score = 66.6 bits (163), Expect = 6e-13
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 1808 RELHKFFHDCKDILGRISEKH-HAMSDELGRDAGSVNTLQRKHQNFLQDLQTLQSQVQQI 1866
L +FF D D+ I EK S++ G+D SV L +KH+ +L Q +V+ +
Sbjct: 1 LLLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEAL 60
Query: 1867 CNESAKLQASYAGEKAKEITNREAEVVNAWASLQNACDARKQKLGD 1912
+ KL A ++EI R E+ W L RKQKL +
Sbjct: 61 NELAEKLIAE-GHYASEEIQERLEELNERWEQLLELAAERKQKLEE 105
Score = 66.2 bits (162), Expect = 8e-13
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 1389 HQTCDDIDSWMNELEKQIENEDTGSDLASVNILMQKQQMIETQMAVKAKQVSELETQAEI 1448
+ DD++SW+ E E + +ED G DL SV L++K + +E ++A +V L AE
Sbjct: 7 FRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEALNELAEK 66
Query: 1449 LQKTVPDKMEEIVVKKSAVEQRFEKIKEPLLARQRALE 1486
L EEI + + +R+E++ E R++ LE
Sbjct: 67 LIAEGHYASEEIQERLEELNERWEQLLELAAERKQKLE 104
Score = 63.9 bits (156), Expect = 5e-12
Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 1063 DLHRFLRDLDHFQVWLTKTQTDVASEDTPSSLADAEKLLNQHQAIREEIDNYTEDYKKMM 1122
L +F RD D + W+ + + ++SED L + LL +H+A+ E+ + + + +
Sbjct: 2 LLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEALN 61
Query: 1123 DYGEKVTAEPSTHDDPQYMFLRERLKALRDGWEELHKMWENRQQLLSQ 1170
+ EK+ AE H + ++ERL+ L + WE+L ++ R+Q L +
Sbjct: 62 ELAEKLIAEG--HYASEE--IQERLEELNERWEQLLELAAERKQKLEE 105
Score = 63.5 bits (155), Expect = 7e-12
Identities = 25/105 (23%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 1278 LQLHQFLQDCEELGEWVQEK-KFTAQDETYRSAKTVHSKWTRHQAFEAEIASNKDRLLRV 1336
L L QF +D ++L W++EK + ++ + ++V + +H+A EAE+A+++DR+ +
Sbjct: 1 LLLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEAL 60
Query: 1337 QQSGSELMKEKPELAELIGPKISDLGQQFDDLETTTKDKGERLFD 1381
+ +L+ E +E I ++ +L ++++ L ++ ++L +
Sbjct: 61 NELAEKLIAEGHYASEEIQERLEELNERWEQLLELAAERKQKLEE 105
Score = 60.4 bits (147), Expect = 8e-11
Identities = 31/105 (29%), Positives = 65/105 (61%)
Query: 1172 LNLQMFNRDAKQAEVLLSQQEHVLSKDETPVNLEQVENLIKRHEAFLTTMEANDDKINGV 1231
L LQ F RDA E + ++E +LS ++ +LE V+ L+K+H+A + A+ D++ +
Sbjct: 1 LLLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEAL 60
Query: 1232 VQFADRLNDEDHYAADKVKKKADNINDRRNANKERAHQQMETLKD 1276
+ A++L E HYA+++++++ + +N+R E A ++ + L++
Sbjct: 61 NELAEKLIAEGHYASEEIQERLEELNERWEQLLELAAERKQKLEE 105
Score = 60.4 bits (147), Expect = 9e-11
Identities = 36/111 (32%), Positives = 66/111 (59%), Gaps = 6/111 (5%)
Query: 526 LQLQQSFQEMLYILDSMEELKMRLLSDDYGKHLMGVEDLLQKHSLVEADINVLGERVKSV 585
L LQQ F++ + +EE + L S+DYGK L V+ LL+KH +EA++ +RV+++
Sbjct: 1 LLLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEAL 60
Query: 586 VQQSQRFLDEETNEGFRPCDPAIIVERVQQLEDAYSELVKLAVERRARLEE 636
+ +++ + E I ER+++L + + +L++LA ER+ +LEE
Sbjct: 61 NELAEKLIAEG------HYASEEIQERLEELNERWEQLLELAAERKQKLEE 105
Score = 57.3 bits (139), Expect = 1e-09
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2020 LEVYQFARDAAVAEAWLIAQEPYLMSMELGLTIDEVENLIKKHEAFEKSAIAQEERFSAL 2079
L + QF RDA E+W+ +E L S + G ++ V+ L+KKH+A E A ++R AL
Sbjct: 1 LLLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEAL 60
Query: 2080 ERLTTFELKELNKRKEEEERKRQEELAAK 2108
L +L EE ++R EEL +
Sbjct: 61 NELAE-KLIAEGHYASEEIQERLEELNER 88
Score = 48.1 bits (115), Expect = 2e-06
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 300 RMIHEYESLTSDLLRWIQETIASLGDRQFANSLVGVQQQLLQFNNYRTVEKPPKFVEKGN 359
++ ++ DL WI+E A L + L VQ L ++ +E +
Sbjct: 1 LLLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALL---KKHKALEAELA-AHQDR 56
Query: 360 LEVLLFTLQSKMRANNQKPYTPKEGKMISDINKAWERLEKAEHERELALRE 410
+E L L K+ + + + + ++N+ WE+L + ER+ L E
Sbjct: 57 VEA-LNELAEKL-IAEGHYASEEIQERLEELNERWEQLLELAAERKQKLEE 105
>gnl|CDD|214479 smart00033, CH, Calponin homology domain. Actin binding domains
present in duplicate at the N-termini of spectrin-like
proteins (including dystrophin, alpha-actinin). These
domains cross-link actin filaments into bundles and
networks. A calponin homology domain is predicted in
yeasst Cdc24p.
Length = 101
Score = 87.8 bits (218), Expect = 2e-20
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 175 DALLLWCQMKTAGYHNVNVRNFTTSWRDGLAFNAIIHKHRPDLIQFEKLSKS----NAIY 230
LL W A Y V NF++ +DG+A A+++ P L+ +K++ S I
Sbjct: 1 KTLLRWVNSLLAEYDKPPVTNFSSDLKDGVALCALLNSLSPGLVDKKKVAASLSRFKKIE 60
Query: 231 NLNNAFTVAEDKLGLTKLLDAEDIFVEQPDEKSIITYVV 269
N+N A + AE G L + ED+ +I ++
Sbjct: 61 NINLALSFAEKLGGKVVLFEPEDLVEGPKLILGVIWTLI 99
Score = 81.2 bits (201), Expect = 4e-18
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 56 KTFQKWVNSHLVRVSCR-IGDLYVDLRDGKMLLKLLEVLSGERLP--RPTKGKMRIHCLE 112
KT +WVNS L + + DL+DG L LL LS + + R +E
Sbjct: 1 KTLLRWVNSLLAEYDKPPVTNFSSDLKDGVALCALLNSLSPGLVDKKKVAASLSRFKKIE 60
Query: 113 NVDKALQFLREQRVHLENMGSHDIVDGNPRLSLGLIWTIILR 154
N++ AL F + + D+V+G P+L LG+IWT+I
Sbjct: 61 NINLALSFAEKLGGKVVLFEPEDLVEG-PKLILGVIWTLISL 101
>gnl|CDD|241449 cd13295, PH_EFA6, Exchange Factor for ARF6 Pleckstrin homology (PH)
domain. EFA6 (also called PSD/pleckstrin and Sec7 domain
containing) is an guanine nucleotide exchange factor for
ADP ribosylation factor 6 (ARF6), which is involved in
membrane recycling. EFA6 has four structurally related
polypeptides: EFA6A, EFA6B, EFA6C and EFA6D. It consists
of a N-terminal proline rich region (PR), a SEC7 domain,
a PH domain, a PR, a coiled-coil region, and a C-terminal
PR. The EFA6 PH domain regulates its association with the
plasma membrane. EFA6 activates Arf6 through its Sec7
catalytic domain and modulates this activity through its
C-terminal domain, which rearranges the actin
cytoskeleton in fibroblastic cell lines. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common fold,
which is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 126
Score = 88.1 bits (219), Expect = 3e-20
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 2153 DADHMEGTLVRKHEWEAIAKRAS--NRSWDKIFVSLRGTLLYFYKDQKSA-KSSPEIYYK 2209
++ +G L+RK + K+ R W + +L+G +LY +KD+ K +
Sbjct: 4 AVEYKKGYLMRKCHADPDGKKTPRGKRGWKMFYATLKGLVLYLHKDEYGCKKQLSYESLR 63
Query: 2210 NETPFELRGGSAQVADDYSKKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNVC 2265
N + A+ A DY+KK HVFR++ + E+LFQA + EEM W+ A++ V
Sbjct: 64 NAIS--VHHSLAEKATDYTKKPHVFRLQTADWREFLFQASDTEEMQSWIEAINLVA 117
>gnl|CDD|241284 cd01253, PH_ARHGAP21-like, ARHGAP21 and related proteins pleckstrin
homology (PH) domain. ARHGAP family genes encode
Rho/Rac/Cdc42-like GTPase activating proteins with a
RhoGAP domain. These proteins functions as a
GTPase-activating protein (GAP) for RHOA and CDC42.
ARHGAP21 controls the Arp2/3 complex and F-actin dynamics
at the Golgi complex by regulating the activity of the
small GTPase Cdc42. It is recruited to the Golgi by to
GTPase, ARF1, through its PH domain and its helical
motif. It is also required for CTNNA1 recruitment to
adherens junctions. ARHGAP21 and it related proteins all
contains a PH domain and a RhoGAP domain. Some of the
members have additional N-terminal domains including PDZ,
SH3, and SPEC. The ARHGAP21 PH domain interacts with the
GTPbound forms of both ARF1 and ARF6 ARF-binding
domain/ArfBD. The members here include: ARHGAP15,
ARHGAP21, and ARHGAP23. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 113
Score = 87.8 bits (218), Expect = 3e-20
Identities = 38/104 (36%), Positives = 61/104 (58%)
Query: 2158 EGTLVRKHEWEAIAKRASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELR 2217
EG L K KRAS+RSW +++ LRG LY YKD++ + +E ++R
Sbjct: 3 EGWLHFKQSVLEKGKRASDRSWKQVWAVLRGHSLYLYKDKRETSPALSAAEDSEQRIDIR 62
Query: 2218 GGSAQVADDYSKKKHVFRVKADNGAEYLFQAKNDEEMNKWVTAL 2261
+A Y+K+K+VFR+ +G+EYLFQA++ ++M W+ A+
Sbjct: 63 SCIVDIAYSYTKRKNVFRLTTSDGSEYLFQAEDRDDMLGWIKAI 106
>gnl|CDD|197544 smart00150, SPEC, Spectrin repeats.
Length = 101
Score = 85.5 bits (212), Expect = 1e-19
Identities = 37/101 (36%), Positives = 66/101 (65%)
Query: 641 WQLYWDMADEENWIKEKEQIVSTGDIGHDLTTINLLLSKHKALEDEIQAHESQLMSVIAV 700
Q D + E W++EKEQ++++ D+G DL ++ LL KH+A E E++AHE ++ ++ +
Sbjct: 1 QQFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNEL 60
Query: 701 GDELVNQQHFGADRIRGRLQDTMAMWQNLLDLAAFRRKRLE 741
G++L+ + H A+ I RL++ W+ L +LA RR++LE
Sbjct: 61 GEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKLE 101
Score = 79.3 bits (196), Expect = 2e-17
Identities = 37/100 (37%), Positives = 60/100 (60%)
Query: 1492 YQFRRDIEDEKLWIAEKLPSAKSTEYGNSLFNVHMLKKKNQSLAKEIDNHEPRINLICNN 1551
QF RD ++ + W+ EK S + G L +V L KK+++ E++ HE R+ +
Sbjct: 1 QQFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNEL 60
Query: 1552 GRKLIDEGHEDSAEFTSLIEDLMDRWQQLKKAVDERRSKL 1591
G +LI+EGH D+ E +E+L +RW++LK+ +ERR KL
Sbjct: 61 GEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKL 100
Score = 77.0 bits (190), Expect = 1e-16
Identities = 40/101 (39%), Positives = 63/101 (62%)
Query: 1598 QQYLFDASEAESWMSEQELYMMVEDRGKDEISTQNLMKKHETLELAVEDYADTIRQLGET 1657
QQ+L DA E E+W+ E+E + ED GKD S + L+KKHE E +E + + + L E
Sbjct: 1 QQFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNEL 60
Query: 1658 ARQLTSEMHPESDQIALKQSQVDKLYAGLKDLAGERRAKLD 1698
QL E HP++++I + ++++ + LK+LA ERR KL+
Sbjct: 61 GEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKLE 101
Score = 72.4 bits (178), Expect = 6e-15
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 1706 LNREVDDLEQWIAEREVVAGSHELGQDYDHVTLLWERFKEFDRDTEAIGTERVAAVNGIA 1765
R+ D+LE W+ E+E + S +LG+D + V L ++ + F+ + EA ERV A+N +
Sbjct: 3 FLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHE-ERVEALNELG 61
Query: 1766 DQLIAAGHSDSATIAEWKDGLNEAWQDLLELIETRTQML 1804
+QLI GH D+ I E + LNE W++L EL E R Q L
Sbjct: 62 EQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKL 100
Score = 70.8 bits (174), Expect = 2e-14
Identities = 37/100 (37%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 747 HQFFADAVDVDIWMLDTVRLVSSEDVGRDEANVQSLLKKHKDVTEELKNYASTIEALRNQ 806
QF DA +++ W+ + +L++SED+G+D +V++LLKKH+ EL+ + +EAL
Sbjct: 1 QQFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNEL 60
Query: 807 ASQLGD-QDKESPEVLERLASIEFRYKELLELAKLRKQRL 845
QL + ++ E+ ERL + R++EL ELA+ R+Q+L
Sbjct: 61 GEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKL 100
Score = 70.8 bits (174), Expect = 2e-14
Identities = 36/101 (35%), Positives = 63/101 (62%)
Query: 852 YKLFSEADGVQQWIGEKDRMLATMVPGKDIEDVEIMKHRYDGFDKEMNANASRVAVVNQL 911
+ +AD ++ W+ EK+++LA+ GKD+E VE + +++ F+ E+ A+ RV +N+L
Sbjct: 1 QQFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNEL 60
Query: 912 ARQLLHVEHPNSEQIVTRQNQLNHDWAGLREKAEGKRDELN 952
QL+ HP++E+I R +LN W L+E AE +R +L
Sbjct: 61 GEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKLE 101
Score = 70.8 bits (174), Expect = 2e-14
Identities = 31/101 (30%), Positives = 65/101 (64%)
Query: 1175 QMFNRDAKQAEVLLSQQEHVLSKDETPVNLEQVENLIKRHEAFLTTMEANDDKINGVVQF 1234
Q F RDA + E L ++E +L+ ++ +LE VE L+K+HEAF +EA+++++ + +
Sbjct: 1 QQFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNEL 60
Query: 1235 ADRLNDEDHYAADKVKKKADNINDRRNANKERAHQQMETLK 1275
++L +E H A++++++ + +N+R KE A ++ + L+
Sbjct: 61 GEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKLE 101
Score = 68.9 bits (169), Expect = 8e-14
Identities = 27/100 (27%), Positives = 54/100 (54%)
Query: 1918 KFLIMVRTLMLWMDDVVRQMNTSEKARDVSGVELLMNNHQSLKAEIDTREDNFTACISLG 1977
+FL L W+++ + + + + +D+ VE L+ H++ +AE++ E+ A LG
Sbjct: 2 QFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNELG 61
Query: 1978 KELLSRNHYASNEIKEKLVGLSNQRNALLHRWEERWENLQ 2017
++L+ H + EI+E+L L+ + L EER + L+
Sbjct: 62 EQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKLE 101
Score = 68.5 bits (168), Expect = 1e-13
Identities = 31/102 (30%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 958 QTFHIECRETVSWIEDKKRILQSTDSLEMDLTGIMTLQRRLSGMERDLAAIQAKLDSLEA 1017
Q F + E +W+E+K+++L S D L DL + L ++ E +L A + ++++L
Sbjct: 1 QQFLRDADELEAWLEEKEQLLASED-LGKDLESVEALLKKHEAFEAELEAHEERVEALNE 59
Query: 1018 EAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKERDAKLE 1059
+ +E +AE I ER++++ WE+L ++ +ER KLE
Sbjct: 60 LGEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKLE 101
Score = 68.1 bits (167), Expect = 2e-13
Identities = 40/100 (40%), Positives = 61/100 (61%)
Query: 424 RFNRKASMRETWLSENQRLVSQDNFGFDLGAVEAAAKKHEAIETDIFAYEERVQAVVTVS 483
+F R A E WL E ++L++ ++ G DL +VEA KKHEA E ++ A+EERV+A+ +
Sbjct: 2 QFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNELG 61
Query: 484 QELEAEKYHDIDRINARKENVLRLWNYLLELLKARRMRLE 523
++L E + D + I R E + W L EL + RR +LE
Sbjct: 62 EQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKLE 101
Score = 66.6 bits (163), Expect = 6e-13
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 1065 HRFLRDLDHFQVWLTKTQTDVASEDTPSSLADAEKLLNQHQAIREEIDNYTEDYKKMMDY 1124
+FLRD D + WL + + +ASED L E LL +H+A E++ + E + + +
Sbjct: 1 QQFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNEL 60
Query: 1125 GEKVTAEPSTHDDPQYMFLRERLKALRDGWEELHKMWENRQQLL 1168
GE++ E P + ERL+ L + WEEL ++ E R+Q L
Sbjct: 61 GEQLIEE----GHPDAEEIEERLEELNERWEELKELAEERRQKL 100
Score = 65.8 bits (161), Expect = 9e-13
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 1811 HKFFHDCKDILGRISEK-HHAMSDELGRDAGSVNTLQRKHQNFLQDLQTLQSQVQQICNE 1869
+F D ++ + EK S++LG+D SV L +KH+ F +L+ + +V+ +
Sbjct: 1 QQFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNEL 60
Query: 1870 SAKLQASYAGEKAKEITNREAEVVNAWASLQNACDARKQKL 1910
+L A+EI R E+ W L+ + R+QKL
Sbjct: 61 GEQLIEE-GHPDAEEIEERLEELNERWEELKELAEERRQKL 100
Score = 64.7 bits (158), Expect = 3e-12
Identities = 27/100 (27%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 1281 HQFLQDCEELGEWVQEK-KFTAQDETYRSAKTVHSKWTRHQAFEAEIASNKDRLLRVQQS 1339
QFL+D +EL W++EK + A ++ + ++V + +H+AFEAE+ ++++R+ + +
Sbjct: 1 QQFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNEL 60
Query: 1340 GSELMKEKPELAELIGPKISDLGQQFDDLETTTKDKGERL 1379
G +L++E AE I ++ +L +++++L+ +++ ++L
Sbjct: 61 GEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKL 100
Score = 64.3 bits (157), Expect = 4e-12
Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 6/107 (5%)
Query: 529 QQSFQEMLYILDSMEELKMRLLSDDYGKHLMGVEDLLQKHSLVEADINVLGERVKSVVQQ 588
QQ ++ + +EE + L S+D GK L VE LL+KH EA++ ERV+++ +
Sbjct: 1 QQFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNEL 60
Query: 589 SQRFLDEETNEGFRPCDPAIIVERVQQLEDAYSELVKLAVERRARLE 635
++ ++E D I ER+++L + + EL +LA ERR +LE
Sbjct: 61 GEQLIEE------GHPDAEEIEERLEELNERWEELKELAEERRQKLE 101
Score = 63.1 bits (154), Expect = 9e-12
Identities = 28/98 (28%), Positives = 53/98 (54%)
Query: 1389 HQTCDDIDSWMNELEKQIENEDTGSDLASVNILMQKQQMIETQMAVKAKQVSELETQAEI 1448
+ D++++W+ E E+ + +ED G DL SV L++K + E ++ ++V L E
Sbjct: 4 LRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNELGEQ 63
Query: 1449 LQKTVPDKMEEIVVKKSAVEQRFEKIKEPLLARQRALE 1486
L + EEI + + +R+E++KE R++ LE
Sbjct: 64 LIEEGHPDAEEIEERLEELNERWEELKELAEERRQKLE 101
Score = 57.0 bits (138), Expect = 1e-09
Identities = 39/86 (45%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 2023 YQFARDAAVAEAWLIAQEPYLMSMELGLTIDEVENLIKKHEAFEKSAIAQEERFSALERL 2082
QF RDA EAWL +E L S +LG ++ VE L+KKHEAFE A EER AL L
Sbjct: 1 QQFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNEL 60
Query: 2083 TTFELKELNKRKEEEERKRQEELAAK 2108
+L E EE +R EEL +
Sbjct: 61 GE-QLIEEGHPDAEEIEERLEELNER 85
>gnl|CDD|241387 cd13233, PH_ARHGAP9-like, Beta-spectrin pleckstrin homology (PH)
domain. ARHGAP family genes encode Rho/Rac/Cdc42-like
GTPase activating proteins with RhoGAP domain. The ARHGAP
members here all have a PH domain upstream of their
C-terminal RhoGAP domain. Some have additional N-terminal
SH3 and WW domains. The members here include: ARHGAP9,
ARHGAP12, ARHGAP15, and ARHGAP27. ARHGAP27 and ARHGAP12
shared the common-domain structure, consisting of SH3,
WW, PH, and RhoGAP domains. The PH domain of ArhGAP9
employs a non-canonical phosphoinositide binding
mechanism, a variation of the spectrin-
Ins(4,5)P2-binding mode, that gives rise to a unique PI
binding profile, namely a preference for both PI(4,5)P2
and the PI 3-kinase products PI(3,4,5)P3 and PI(3,4)P2.
This lipid binding mechanism is also employed by the PH
domain of Tiam1 and Slm1. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 110
Score = 71.5 bits (176), Expect = 1e-14
Identities = 36/91 (39%), Positives = 55/91 (60%)
Query: 2177 RSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVADDYSKKKHVFRV 2236
++W +V L G+ L FYKDQKSA +S K E+ +LRG S + A + S +K+VF++
Sbjct: 20 KNWSTSWVVLTGSHLLFYKDQKSAAASGGPQSKPESSVDLRGASIEWAKEKSSRKNVFQL 79
Query: 2237 KADNGAEYLFQAKNDEEMNKWVTALSNVCEQ 2267
G EYL Q+ ND E+ +W A+ V ++
Sbjct: 80 STVTGTEYLLQSDNDTEIQEWFDAIKRVIQR 110
>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain. Domain commonly found in
eukaryotic signalling proteins. The domain family
possesses multiple functions including the abilities to
bind inositol phosphates, and various proteins. PH
domains have been found to possess inserted domains (such
as in PLC gamma, syntrophins) and to be inserted within
other domains. Mutations in Brutons tyrosine kinase (Btk)
within its PH domain cause X-linked agammaglobulinaemia
(XLA) in patients. Point mutations cluster into the
positively charged end of the molecule around the
predicted binding site for phosphatidylinositol lipids.
Length = 102
Score = 64.5 bits (157), Expect = 3e-12
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 2157 MEGTLVRKHEWEAIAKRASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFEL 2216
EG L +K +SW K + L + L +YK +K KS YK + +L
Sbjct: 3 KEGWLYKK-------SGGGKKSWKKRYFVLFNSTLLYYKSKKDKKS-----YKPKGSIDL 50
Query: 2217 RGGSAQVADDYS--KKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNVC 2265
G + + A D KK H F +K + L QA+++EE KWV AL
Sbjct: 51 SGCTVREAPDPDSSKKPHCFEIKTSDRKTLLLQAESEEEREKWVEALRKAI 101
>gnl|CDD|215766 pfam00169, PH, PH domain. PH stands for pleckstrin homology.
Length = 101
Score = 64.4 bits (157), Expect = 4e-12
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 2156 HMEGTLVRKHEWEAIAKRASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFE 2215
EG L++K +SW K + L +L +YKD K + S P+
Sbjct: 2 IKEGWLLKKG-------SGGRKSWKKRYFVLFDGVLLYYKDSKKSSSRPK------GSIP 48
Query: 2216 LRGGSAQVADDY--SKKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNVC 2265
L G D K+K+ F ++ + +L QA+++EE +WV A+ +
Sbjct: 49 LSGCQVTKVPDSEDGKRKNCFEIRTGDRETFLLQAESEEERKEWVKAIRSAI 100
>gnl|CDD|241264 cd01230, PH1_Tiam1_2, T-lymphoma invasion and metastasis 1 and 2
Pleckstrin Homology (PH) domain, N-terminal domain.
Tiam1 activates Rac GTPases to induce membrane ruffling
and cell motility while Tiam2 (also called STEF (SIF
(still life) and Tiam1 like-exchange factor) contributes
to neurite growth. Tiam1/2 are Dbl-family of GEFs that
possess a Dbl(DH) domain with a PH domain in tandem.
DH-PH domain catalyzes the GDP/GTP exchange reaction in
the GTPase cycle and facillitating the switch between
inactive GDP-bound and active GTP-bound states. Tiam1/2
possess two PH domains, which are often referred to as
PHn and PHc domains. The DH-PH tandem domain is made up
of the PHc domain while the PHn is part of a novel
N-terminal PHCCEx domain which is made up of the PHn
domain, a coiled coil region(CC), and an extra region
(Ex). PHCCEx mediates binding to plasma membranes and
signalling proteins in the activation of Rac GTPases. The
PH domain resembles the beta-spectrin PH domain,
suggesting non-canonical phosphatidylinositol binding. CC
and Ex form a positively charged surface for protein
binding. There are 2 motifs in Tiam1/2-interacting
proteins that bind to the PHCCEx domain: Motif-I in CD44,
ephrinBs, and the NMDA receptor and Motif-II in Par3 and
JIP2.Neither of these fall in the PHn domain. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common fold,
which is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 127
Score = 64.4 bits (157), Expect = 6e-12
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 2173 RASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETP---FELRGGSAQVADDYSK 2229
AS R W K +V+L+G L FY + ++ + N TP + G AQ ++ K
Sbjct: 25 LASRRKWKKYWVTLKGCTLLFY--ECDERTGIDD---NSTPKHALFVEGSIAQAVPEHPK 79
Query: 2230 KKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNVC 2265
K +VF + G YLFQA + E+ W+TA+ + C
Sbjct: 80 KDNVFCLSNSFGDAYLFQATSQTELENWITAIHSAC 115
>gnl|CDD|221350 pfam11971, CAMSAP_CH, CAMSAP CH domain. This domain is the
N-terminal CH domain from the CAMSAP proteins.
Length = 85
Score = 60.8 bits (148), Expect = 4e-11
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 181 CQMKTAGYHNVNVRNFTTSWRDGLAFNAIIHKHRPDLIQF------EKLSKSNAIYNLNN 234
+ V N T + DG A A+IH + P L+ E +S ++++YN+
Sbjct: 1 YVSARCTPLSPPVENLTRDFSDGCALAALIHFYCPQLVPLHDICLKETMSVADSLYNIQL 60
Query: 235 AFTVAEDKLGLTKL-LDAEDIF 255
E+ LG L ED+
Sbjct: 61 LQEFCEEHLGNRCFHLTLEDLL 82
>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common fold,
which is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 92
Score = 53.5 bits (128), Expect = 2e-08
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 2157 MEGTLVRKHEWEAIAKRASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFEL 2216
EG L ++ +SW K + L +L +YK +K + P+ L
Sbjct: 1 KEGWLKKRGGK-------GLKSWKKRWFVLFDDVLLYYKSKKDSSKKPKG------LIPL 47
Query: 2217 RGGSAQVADDYSKKKHVFRVK-ADNGAEYLFQAKNDEEMNKWVTA 2260
G S K + F + D G Y QA+++EE +W+ A
Sbjct: 48 SDGLEVELVSSSGKPNCFELVTPDRGRTYYLQAESEEEREEWLEA 92
>gnl|CDD|241480 cd13326, PH_CNK_insect-like, Connector enhancer of KSR (Kinase
suppressor of ras) (CNK) pleckstrin homology (PH) domain.
CNK family members function as protein scaffolds,
regulating the activity and the subcellular localization
of RAS activated RAF. There is a single CNK protein
present in Drosophila and Caenorhabditis elegans in
contrast to mammals which have 3 CNK proteins (CNK1,
CNK2, and CNK3). All of the CNK members contain a sterile
a motif (SAM), a conserved region in CNK (CRIC) domain,
and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and a PH domain. A
CNK2 splice variant CNK2A also has a PDZ domain-binding
motif at its C terminus and Drosophila CNK (D-CNK) also
has a domain known as the Raf-interacting region (RIR)
that mediates binding of the Drosophila Raf kinase. This
cd contains CNKs from insects, spiders, mollusks, and
nematodes. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 90
Score = 49.3 bits (118), Expect = 5e-07
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 2158 EGTLVRKHEWEAIAKRASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELR 2217
+G L ++ K W K + L+G+ LY ++ Q+S K+ I+ L
Sbjct: 2 QGWLYQRRR-----KGKGGGKWAKRWFVLKGSNLYGFRSQESTKADCVIF--------LP 48
Query: 2218 GGSAQVADDYSKKKHVFRVKADNGAEYLFQAKNDEEMNKWV 2258
G + A + +K+ F+V G + F A++ E+M KW+
Sbjct: 49 GFTVSPAPEVKSRKYAFKVY-HTGTVFYFAAESQEDMKKWL 88
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 50.8 bits (122), Expect = 1e-05
Identities = 50/280 (17%), Positives = 107/280 (38%), Gaps = 41/280 (14%)
Query: 1424 KQQMIETQMAVKAKQVSELETQAEILQKTVPDKMEEIVVKKSAVEQRFEKIKEPLLARQR 1483
+ Q +E ++ +VSELE + E LQK + + + S +EQ+ + ++E R
Sbjct: 261 ELQELEEKLEELRLEVSELEEEIEELQKEL----YALANEISRLEQQKQILRE----RLA 312
Query: 1484 ALEKKKEAYQFRRDIEDEKLWIAEKLPSAKSTEYGNSLFNVHMLKKKNQSLAKEIDNHEP 1543
LE++ E + + + + KL + + L++K + L +E+++ E
Sbjct: 313 NLERQLEELEAQLEELESKLDELAE--------------ELAELEEKLEELKEELESLE- 357
Query: 1544 RINLICNNGRKLIDEGHEDSAEFTSLIEDLMDRWQQLKKAVDERRSKLIQSEKAQQYLFD 1603
++E + E S +E+L ++ + L+ V + ++ + L
Sbjct: 358 ----------AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
Query: 1604 -----ASEAESWMSEQELYMMVEDRGKDEISTQNLMKKHETLELAVEDYADTIRQLGETA 1658
E E E + + + + L + E LE E+ L E
Sbjct: 408 RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467
Query: 1659 ---RQLTSEMHPESDQIALKQSQVDKLYAGLKDLAGERRA 1695
+ + ++A Q+++D L ++L G
Sbjct: 468 EELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
Score = 36.2 bits (84), Expect = 0.28
Identities = 55/294 (18%), Positives = 116/294 (39%), Gaps = 46/294 (15%)
Query: 1412 GSDLASVNILMQKQQM--IETQMAVKAKQVSELETQAEILQKTVPDKMEEIVVKKSAVEQ 1469
GS + +IL +++++ +E ++ ++++ELE L+K + +++EE + + +
Sbjct: 664 GSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKEL-EELEEELEQLRKELE 722
Query: 1470 RFEKIKEPLLARQRALEKKKEAYQFRRDIEDEKLWIAEKLPSAKSTEYGNSLFNVHMLKK 1529
+ L LE + E + R ++L
Sbjct: 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKEL-------------------------- 756
Query: 1530 KNQSLAKEIDNHEPRINLICNNGRKLIDEGHEDSAEFTSLIEDLMDRWQQLKKAVDERRS 1589
L EI+ E R+ + + E + E + IE L + + L++A+DE R+
Sbjct: 757 --TELEAEIEELEERLEEA----EEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
Query: 1590 KLIQSEKAQQYLFDASEAESWMSEQELYMMVEDRGKDEISTQNLMKKHETLELAVEDYAD 1649
+L + L + L + E ++L ++ E L +E A
Sbjct: 811 ELTLLNEEAANL-----------RERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859
Query: 1650 TIRQLGETARQLTSEMHPESDQIALKQSQVDKLYAGLKDLAGERRAKLDEALKL 1703
I +L E +L SE+ ++ A + + L + L++L+ E R + +L
Sbjct: 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913
Score = 36.2 bits (84), Expect = 0.30
Identities = 146/858 (17%), Positives = 309/858 (36%), Gaps = 135/858 (15%)
Query: 387 ISDINKAWERLEK-AEH-ERELALREELIRQEKLEQLAARFNRKASMRETWLSENQRLVS 444
++++ + + LE+ AE ER L+ EL R+ +L L R E E
Sbjct: 195 LNELERQLKSLERQAEKAERYKELKAEL-RELELALLVLRLEELREELEELQEE------ 247
Query: 445 QDNFGFDLGAVEAAAKKHEAIETDIFAYEERVQAVVTVSQELEAE------KYHDIDRIN 498
++ A ++ E + ++ EE+++ + ELE E + + +
Sbjct: 248 ----------LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297
Query: 499 ARKENVLRLWNYLLELLKARRMRLESSL-QLQQSFQEMLYILDSMEELKMRLLSDDYGKH 557
+R E ++ L L+ + LE+ L +L+ E+ L +EE L +
Sbjct: 298 SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE----- 352
Query: 558 LMGVEDLLQKHSLVEADINVLGERVKSVVQQSQRFLDEETNEGFRPCDPAIIVERVQQLE 617
+E L + +EA++ L R++ + +Q + + + + Q+
Sbjct: 353 ---LESLEAELEELEAELEELESRLEELEEQLETLRSK-------------VAQLELQIA 396
Query: 618 DAYSELVKLAVERRARLEESRKLWQLYWDMADEENWIKEKEQIVSTGDIGHDLTTINLLL 677
+E+ +L R RLE+ R+ Q E + +K + ++ +L + L
Sbjct: 397 SLNNEIERLE-ARLERLEDRRERLQ------QEIEELLKKLEEAELKELQAELEELEEEL 449
Query: 678 SKHKALEDEIQAHESQLMSVIAVGDELVNQQHFGADRIRGRLQDTMAMWQNLLDLAAFRR 737
+ + + ++ +L + ++ ++ +++ RL + +NL + +
Sbjct: 450 EELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVK 509
Query: 738 KRLEEAVDFHQFFADAVDVDIWMLDTVRLVSSEDVGRDEANVQSLLKKHKD--VTEELKN 795
L+ + L+S ++ EA +++ L V E L
Sbjct: 510 ALLKNQSGLSGILGVLSE----------LISVDE--GYEAAIEAALGGRLQAVVVENLNA 557
Query: 796 YASTIEALRNQA---------SQLGDQDKESPEVLERLASIEFRYKELLELAKLRKQ--- 843
I L+ + + + + E L +IE +L K +
Sbjct: 558 AKKAIAFLKQNELGRVTFLPLDSIKGTEIQGND-REILKNIEGFLGVAKDLVKFDPKLRK 616
Query: 844 -------------RLLDALSLYKLFSE------ADGVQ---QWI---GEKDRMLATMVPG 878
L +AL L K DG + G + +
Sbjct: 617 ALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERR 676
Query: 879 KDIED----VEIMKHRYDGFDKEMNANASRVAVVNQLARQLLHVEHPNSEQIVTRQNQLN 934
++IE+ +E ++ + +K + + + + QL S QI + L
Sbjct: 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL- 735
Query: 935 HDWAGLREKAEGKRDELNSAHGVQTFHIECRETVSWIEDKKRILQSTDSLEMDLTGIMTL 994
A L + E + + T E E ++R+ ++ + L I L
Sbjct: 736 ---ARLEAEVEQLEERIAQLSKELTELEAEIE-----ELEERLEEAEEELAEAEAEIEEL 787
Query: 995 QRRLSGMERDLAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKER 1054
+ ++ ++ +L A++ LD L AE EEA +RER L + +
Sbjct: 788 EAQIEQLKEELKALREALDELRAEL----TLLNEEAANLRER----------LESLERRI 833
Query: 1055 DAKLEEAGDLHRFLRDLDHFQVWLTKTQTDVASEDTPSSLADAEKLLNQHQAIREEIDNY 1114
A DL + +L L + E ++ E LLN+ ++ E +
Sbjct: 834 AATERRLEDLEEQIEELSEDIESLAAEIEE-LEELIEELESELEALLNERASLEEALALL 892
Query: 1115 TEDYKKMMDYGEKVTAEPSTHDDPQYMFLRERLKALRDGWEELHKMWENRQQLLSQSLNL 1174
+ +++ + ++ ++ S + LRE+L L E L +N Q+ LS+ +L
Sbjct: 893 RSELEELSEELRELESKRSELRR-ELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL 951
Query: 1175 QMFNRDAKQAEVLLSQQE 1192
+ +A + ++ ++E
Sbjct: 952 TLEEAEALENKIEDDEEE 969
Score = 32.3 bits (74), Expect = 3.5
Identities = 51/294 (17%), Positives = 103/294 (35%), Gaps = 33/294 (11%)
Query: 776 EANVQSLLKKHKDVTEELKNYASTIEALRNQASQLGDQDKESPEVLERLASIEFRYKELL 835
E + L K ++ +EL+ +E LR + +L Q + L RL + + +E +
Sbjct: 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
Query: 836 -----ELAKLRKQRLLDALSLYKLFSEADGVQQWIGEKDRMLATMVPGKDIEDVEIMKHR 890
EL +L + L + E + I E + + + E+++ ++
Sbjct: 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL-----KEELKALREA 804
Query: 891 YDGFDKEMNANASRVAVVNQLARQLLHVEHPNSEQIVTRQNQ----------LNHDWAGL 940
D E+ A + + L ++ + Q L + L
Sbjct: 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL 864
Query: 941 REKAEGKRDELNSAHGVQTFHIECRETVSWIEDK---------KRILQSTDSLEMDLTGI 991
E E EL + + E + ++ + + LE +
Sbjct: 865 EELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924
Query: 992 MTLQRRLSGMERDLAAIQAKLDSL----EAEAVAIEKEHPEEAEAIRERIKQIR 1041
L+ RL G+E + +Q +L EA A+E + ++ E R R+K++
Sbjct: 925 AQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
Score = 31.2 bits (71), Expect = 7.9
Identities = 143/824 (17%), Positives = 299/824 (36%), Gaps = 128/824 (15%)
Query: 484 QELEAEKYHDIDRINARKENVLRLWNYLLELLKARRMRLESSLQLQQSFQEMLYILDSME 543
+ E E + R+ +E + L EL +A E + +LQ+ +++ + +
Sbjct: 221 ELRELELALLVLRLEELREELEEL---QEELKEAEEELEELTAELQELEEKLEELRLEVS 277
Query: 544 ELKMRLLSDDYGKHLMGVEDLLQKHSLVEADINVLGERVKSVVQQSQRFLDEETNEGFRP 603
EL+ + ++ K L L + S +E +L ER+ ++ +Q + L+ + E
Sbjct: 278 ELEEEI--EELQKEL---YALANEISRLEQQKQILRERLANLERQLEE-LEAQLEELESK 331
Query: 604 CDPAIIVERVQQLEDAYSELVKLAVERRARLEESRKLWQLYWDM-----ADEENWIKEKE 658
D E + +LE+ EL + A LEE + ++ EE +
Sbjct: 332 LDELA--EELAELEEKLEELKEELESLEAELEELEAELE---ELESRLEELEEQLETLRS 386
Query: 659 QIVSTGDIGHDLTTINLLLSKHKALEDEIQAHESQLMSVI-AVGDELVNQQHFGADRIRG 717
++ + + ++N + + +A + ++ +L I + +L + ++
Sbjct: 387 KVA---QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE---LKELQA 440
Query: 718 RLQDTMAMWQNLLDLAAFRRKRLEEAVDFHQFFADAVDVDIWMLDTVRLVSSEDVGRDEA 777
L++ + L + + LEE + + A+D R+ A
Sbjct: 441 ELEELEEELEELQEELERLEEALEELREELEEAEQALD---------------AAERELA 485
Query: 778 NVQSLLKKHKDVTEELKNYASTIEALRNQASQLGDQDKESPEVLERLASIEFRYKELLEL 837
+Q+ L + + E L+ ++ ++AL S L VL L S++ Y+ +E
Sbjct: 486 QLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIL----GVLSELISVDEGYEAAIEA 541
Query: 838 AKLRKQRLLDALSLYKLFSEADGVQQWIGEKDRMLATMVPGKDIEDVEI------MKHRY 891
A L RL + + + A ++ + + T +P I+ EI +
Sbjct: 542 A-LGG-RLQAVVV--ENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNI 597
Query: 892 DGF--------------DKEMNANASRVAVVNQL--ARQLLHVEHPNSEQIVTRQNQLNH 935
+GF K ++ V VV+ L A +L P +IVT L
Sbjct: 598 EGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPG-YRIVTLDGDLVR 656
Query: 936 DWAGLREKAEGKRDELNSAHGVQTFHIECRETVSWIEDKKRILQSTDSLEMDLTGIMTLQ 995
G+ K + +S + E E + +E+K L+ +L + L+
Sbjct: 657 -PGGVITGGSAKTN--SSILERRREIEELEEKIEELEEKIAELE--KALAELRKELEELE 711
Query: 996 RRLSGMERDLAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKERD 1055
L + ++L + ++ +L + +E E E + ERI Q+ +L ++E +
Sbjct: 712 EELEQLRKELEELSRQISALRKDLARLEAEV----EQLEERIAQLSKELTELEAEIEELE 767
Query: 1056 AKLEEAGDLHRFLRDLDHFQVWLTKTQTDVASEDTPSSL-ADAEKLLNQHQAIREEIDNY 1114
+LEEA + +E L A E+L + +A+RE +D
Sbjct: 768 ERLEEA-------------------EEELAEAEAEIEELEAQIEQLKEELKALREALDEL 808
Query: 1115 TEDYKKMMDYGEKVTAEPSTHDDPQYMFLRERLKALRDGWEELHKMWENRQQLLSQSLNL 1174
+ E+ + L R+ A E+L + E + + SL
Sbjct: 809 RAELT---LLNEEAANLRERLES-----LERRIAATERRLEDLEEQIEELSEDIE-SLAA 859
Query: 1175 QMFNRDAKQAEVLLSQQEHVLSKDETPVNLEQVENLIKRHEAFLTTMEANDDKINGVVQF 1234
++ + E + E L + +L + + +E +++ +
Sbjct: 860 EIEELEELIEE----------LESELEALLNERASLEEALALLRSELEELSEELRELESK 909
Query: 1235 ADRLNDEDHYAADKVKKKADNINDRRNANKERAHQQMETLKDQL 1278
L E +K+ + E +++ L+++L
Sbjct: 910 RSELRRELEELREKLAQL--------ELRLEGLEVRIDNLQERL 945
>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins
1, 2, and 3 pleckstrin homology (PH) domain. PEPP1 (also
called PLEKHA4/PH domain-containing family A member 4 and
RHOXF1/Rhox homeobox family member 1), and related
homologs PEPP2 (also called PLEKHA5/PH domain-containing
family A member 5) and PEPP3 (also called PLEKHA6/PH
domain-containing family A member 6), have PH domains
that interact specifically with PtdIns(3,4)P3. Other
proteins that bind PtdIns(3,4)P3 specifically are: TAPP1
(tandem PH-domain-containing protein-1) and TAPP2],
PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2).
All of these proteins contain at least 5 of the 6
conserved amino acids that make up the putative
phosphatidylinositol 3,4,5- trisphosphate-binding motif
(PPBM) located at their N-terminus. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common fold,
which is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 104
Score = 44.2 bits (105), Expect = 5e-05
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 2172 KRASN--RSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVADDYSK 2229
K+ + ++W K + L+ LY+YKD + K+ I + T S D
Sbjct: 15 KQGGSGLKNWKKRWFVLKDNCLYYYKDPEEEKALGSILLPSYTI------SPASPSDEIN 68
Query: 2230 KKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSN 2263
+K F+ + Y F A EEM +W+ ALS
Sbjct: 69 RKFAFKAEHAGMRTYYFAADTQEEMEQWMKALSL 102
>gnl|CDD|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH)
domain, repeat 1. The functions of these fungal proteins
are unknown, but they all contain 2 PH domains. This cd
represents the first PH repeat. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 106
Score = 42.6 bits (101), Expect = 2e-04
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 2177 RSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVADDYSKKKHVFRV 2236
++W K + LR L +YKD+K K I T A + D K+K+VF +
Sbjct: 20 KTWKKRWFVLRPCQLSYYKDEKEYKLRRVINLSELTAV------APLKDK--KRKNVFAI 71
Query: 2237 KADNGAEYLFQAKNDEEMNKWVTAL 2261
+ Y FQA ++++ N+WV A+
Sbjct: 72 YTPS-KNYHFQASSEKDANEWVEAI 95
>gnl|CDD|241462 cd13308, PH_3BP2, SH3 domain-binding protein 2 Pleckstrin homology
(PH) domain. SH3BP2 (the gene that encodes the adaptor
protein 3BP2), HD, ITU, IT10C3, and ADD1 are located near
the Huntington's Disease Gene on Human Chromosome 4pl6.3.
SH3BP2 lies in a region that is often missing in
individuals with Wolf-Hirschhorn syndrome (WHS). Gain of
function mutations in SH3BP2 causes enhanced B-cell
antigen receptor (BCR)-mediated activation of nuclear
factor of activated T cells (NFAT), resulting in a rare,
genetic disorder called cherubism. This results in an
increase in the signaling complex formation with Syk,
phospholipase C-gamma2 (PLC-gamma2), and Vav1. It was
recently discovered that Tankyrase regulates 3BP2
stability through ADP-ribosylation and ubiquitylation by
the E3-ubiquitin ligase. Cherubism mutations uncouple
3BP2 from Tankyrase-mediated protein destruction, which
results in its stabilization and subsequent
hyperactivation of the Src, Syk, and Vav signaling
pathways. SH3BP2 is also a potential negative regulator
of the abl oncogene. PH domains have diverse functions,
but in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 113
Score = 41.2 bits (97), Expect = 5e-04
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 2155 DHM-EGTLVRKHEWEAIAKRASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETP 2213
D G L +K + W +V + +Y++K+ +SAK
Sbjct: 8 DVTHSGYLTKKG-----GSQKQLLKWPLRYVIIHKGCVYYFKNSQSAKPKGVFS------ 56
Query: 2214 FELRGGSAQVADDY-SKKKHVFRV--KADNGAEYLFQAKNDEEMNKWVTALSNVCEQ 2267
L G + + A++ SKKK VF++ + + + F AK+++EM +W+ +L ++
Sbjct: 57 --LNGYNRRAAEETTSKKKFVFKIIHLSKDHRTWYFSAKSEDEMKEWMESLRKEIDR 111
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 44.3 bits (105), Expect = 9e-04
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 2042 YLMSMEL-GLTIDEVENLIKKHEAFEKSAIAQEERFSALERLTTFELKELNKRKEEEERK 2100
YL+SM + LT ++VE L + E +K ++ + + + + +L + + EE+E
Sbjct: 1090 YLLSMPIWSLTKEKVEKLNAELE--KKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEV 1147
Query: 2101 RQEELA----AKQTPPTSPDQSAKDRLDGEEVKDKEKEGESRQEKQARGERPTSGAD 2153
++E+A K + K +L +E K K+ + ++ G +D
Sbjct: 1148 EEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSD 1204
Score = 31.9 bits (73), Expect = 5.3
Identities = 39/260 (15%), Positives = 84/260 (32%), Gaps = 16/260 (6%)
Query: 2036 LIAQEPYLMSMELGLTIDEVENLIKKHEAFEKSAIAQEERFSALERLTTFELKELNKRKE 2095
L P M +E +D+ E +++ E E+ IA+E+R + + +L++ +K+
Sbjct: 1121 LKNTTPKDMWLE---DLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKK 1177
Query: 2096 EEERKRQE-ELAAKQTPPTSPDQSAKDRLDGEEVKDKEKEGESRQEKQARGERPTSGADA 2154
E+++K+ + + K + + + D + K K+ S Q E +
Sbjct: 1178 EKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKK 1237
Query: 2155 DHMEGTLVRKHEWEAIAKRASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPF 2214
++ +K+ ++ S D + + + S Y
Sbjct: 1238 SSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKP-------KNAPKRVSAVQYSPPPPSK 1290
Query: 2215 ELRGGSAQVADDYSKKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNVCEQQASGGPS 2274
G S + S K + L K ++ K + S
Sbjct: 1291 RPDGESNGGSKPSSPTK---KKVKKRLEGSLAALKKKKKSEK--KTARKKKSKTRVKQAS 1345
Query: 2275 SRSQTLPAAEMRKDEPKRRS 2294
+ + RK + S
Sbjct: 1346 ASQSSRLLRRPRKKKSDSSS 1365
Score = 31.9 bits (73), Expect = 5.5
Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 1437 KQVSELETQAEILQKTVP---------------DKMEEIVVKKSAVEQRFEKIKEPLLAR 1481
++ + E + E L+ T P ++ EE+ K+ A EQR + + ++
Sbjct: 1109 AELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASK 1168
Query: 1482 QRALEKKKEAYQFRRDIEDEKLWIAEKLPSAK-STEYGNSLFNVHMLKKKNQSLAKEIDN 1540
R + KK+ + ++ D+ + S + ++ L + KK N S + + D+
Sbjct: 1169 LRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDD 1228
Query: 1541 HEP 1543
E
Sbjct: 1229 EEQ 1231
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 44.3 bits (105), Expect = 0.001
Identities = 53/324 (16%), Positives = 122/324 (37%), Gaps = 44/324 (13%)
Query: 908 VNQLARQLLHVEHPNSEQIVTRQNQLNHDWAGLREKAEGKRDELNSAHGVQTFHIECRET 967
+ +L QL +E + + L LR + E +L
Sbjct: 676 LAELEAQLEKLEEEL-KSLKNELRSLEDLLEELRRQLEELERQLEELKRELA-----ALE 729
Query: 968 VSWIEDKKRILQSTDSLEMDLTGIMTLQRRLSGMERDLAAIQAKLDSLEAEAVAIEKEHP 1027
+ + R+ + + LE + LQ RL +E +L +++ L L+ E +E++
Sbjct: 730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQ 789
Query: 1028 EEAEAIRERIKQIRIIWEQLTQMLKERDAKLEEAGDLHRFLRDLDHFQVWLTKTQTDVAS 1087
E + E +++ +L + +E ++ + L + + +L+
Sbjct: 790 ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE-------------- 835
Query: 1088 EDTPSSLADAEKLLNQHQAIREEIDNYTEDYKKMMDYGEKVTAEPSTHDDPQYMFLRERL 1147
+ E+L + + EE++ ++ +++ + E++ AE L + L
Sbjct: 836 --------EIEELEEKLDELEEELEELEKELEELKEELEELEAE--------KEELEDEL 879
Query: 1148 KALRDGWEEL--------HKMWENRQQLLSQSLNLQMFNRDAKQAEVLLSQQEHVLSKDE 1199
K L + EEL ++ E ++++ L+ ++ EV L + E L ++
Sbjct: 880 KELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEY 939
Query: 1200 TPVNLEQVENLIKRHEAFLTTMEA 1223
++E I+R E + +
Sbjct: 940 EDTLETELEREIERLEEEIEALGP 963
Score = 44.3 bits (105), Expect = 0.001
Identities = 51/310 (16%), Positives = 120/310 (38%), Gaps = 17/310 (5%)
Query: 989 TGIMTLQRRLSGMERDLAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLT 1048
+ +R L +E +LA ++A+L+ LE E +++ E + + E +Q+ + QL
Sbjct: 660 RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLE 719
Query: 1049 QMLKERDAKLEEAGDLHRFLRDLDHFQVWLTKTQTDVASEDTPSSLADAEKLLNQHQAIR 1108
++ +E A EE L L +L+ L + ++ L + E+ L +
Sbjct: 720 ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQER-----LEELEEELESLEEAL 774
Query: 1109 EEIDNYTEDYKKMMDYGEKVTAEPSTHDDPQYMFLRERLKALRDGWEELHKMWENRQQLL 1168
++ E+ ++ ++ E + RL AL E + E R++ L
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEE----ELEEAERRLDAL----ERELESLEQRRERL 826
Query: 1169 SQSLNLQMFNRDAKQAEVLLSQQEHVLSKDETPVNLEQVENLIKRHEAFLTTMEANDDKI 1228
Q + + + E+ E +E LE+++ ++ EA +E ++
Sbjct: 827 EQEIE----ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKEL 882
Query: 1229 NGVVQFADRLNDEDHYAADKVKKKADNINDRRNANKERAHQQMETLKDQLQLHQFLQDCE 1288
+ + E ++K++ + + +R + + + L + + + +
Sbjct: 883 EEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDT 942
Query: 1289 ELGEWVQEKK 1298
E +E +
Sbjct: 943 LETELEREIE 952
Score = 43.2 bits (102), Expect = 0.002
Identities = 55/312 (17%), Positives = 127/312 (40%), Gaps = 23/312 (7%)
Query: 1356 PKISDLGQQFDDLETTTKDKGERLFDSNREV-LIHQTCDDIDSWMNELEKQIENEDTGSD 1414
++ +L ++ +LE + E L E+ + +++ + ELE+Q+E
Sbjct: 667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKR--- 723
Query: 1415 LASVNILMQKQQMIETQMAVKAKQVSELETQAEILQKTVPDKMEEIVVKKSAVEQRFEKI 1474
+ L ++ + +++++ +++ ELE + E LQ+ + + EE+ + A+ + E+I
Sbjct: 724 --ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI 781
Query: 1475 KEPLLARQRALEKKKEAYQFRRDIEDEKLWIAEKLPSAKSTEYGNSLFNVHMLKKKNQSL 1534
+E RQ E+ ++E+E +L A E + L+++ + L
Sbjct: 782 EELEEKRQALQEE-------LEELEEELEEAERRL-DALERELESLEQRRERLEQEIEEL 833
Query: 1535 AKEIDNHEPRINLICNNGRKLIDEGHEDSAEFTSLIEDLMDRWQQLKKAVDERRSKLIQS 1594
+EI+ E + + ++E ++ E +E+L ++L+ + E + +
Sbjct: 834 EEEIEELE----EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEEL 889
Query: 1595 EKAQQYLFD-----ASEAESWMSEQELYMMVEDRGKDEISTQNLMKKHETLELAVEDYAD 1649
E+ + L E E E +R + E+ + E + +
Sbjct: 890 EEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELER 949
Query: 1650 TIRQLGETARQL 1661
I +L E L
Sbjct: 950 EIERLEEEIEAL 961
Score = 41.6 bits (98), Expect = 0.006
Identities = 137/827 (16%), Positives = 297/827 (35%), Gaps = 80/827 (9%)
Query: 396 RLEKAEHERELALREELIRQEKLEQLAARFNRKASMRETW--LSENQRLVSQDNFGFDLG 453
+ + ER L+ EL E LA + + E LS + + + +
Sbjct: 206 ERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEA 265
Query: 454 A--VEAAAKKHEAIETDIFAYEERVQAVVTVSQELEAEKYHDIDRINARKENVLRLWNYL 511
+E + E + ++ +E + + +ELE E +R+ + + L L
Sbjct: 266 EKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERL 325
Query: 512 LEL---LKARRMRLESSLQLQQSFQ----EMLYILDSMEELKMRLLSDDYGKHLM---GV 561
EL ++A + LE L + + E+ + +EE LL + +
Sbjct: 326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385
Query: 562 EDLLQKHSLVEADINVLGERVKSVVQQSQRFLDEETNEGFRPCDPAIIVERVQ-QLEDAY 620
+L + + + ++ L ++S+ ++ +R + + + +E +Q +LE+
Sbjct: 386 AELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELN 445
Query: 621 SELVKLAVERRARLEESRKLWQLYW----DMADEENWIKEKEQ-IVSTGDIGHDLTTINL 675
EL +L + + ++L + ++ E + E + +
Sbjct: 446 EELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRA 505
Query: 676 LLSKHKALEDEIQAHESQLMSV---------IAVGDELVNQQHFGADRIRGRLQDTMAMW 726
+L ++ + ++L+ V A+G+ L Q + + +
Sbjct: 506 VLEALESGLPGVYGPVAELIKVKEKYETALEAALGNRL---QAVVVENEEVAKKAIEFLK 562
Query: 727 QNLLDLAAF---------RRKRLEEAVDFHQFFADAVDVD-------IWMLDTVRLVSSE 770
+N A F R + + A F +D +D D ++L +V
Sbjct: 563 ENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDL 622
Query: 771 DVGRDEANVQSLLKKHKDVTEELKNYASTIEALRNQASQLGDQDKESPEVLERLASIEFR 830
+ R A + + + +L + +I Q +E E+ E LA +E +
Sbjct: 623 EQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQ 682
Query: 831 YKELLELAKLRKQRLLDALSLYKLFSEADGVQQWIGEKDRMLATMVPGKDIEDVEIMKHR 890
++L E K K L SL L E + + + L + + E ++
Sbjct: 683 LEKLEEELKSLKNEL---RSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739
Query: 891 YDGFDKEMNANASRVAVVNQLA--RQLLHVEHPNSEQIVTRQNQLNHDWAGLREKAEGKR 948
+ ++ + +L + L ++ +L L+E+ E
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELE 799
Query: 949 DELNSAHGVQTFHIECRETVSWIEDKKRILQSTDSLEMDLTG----IMTLQRRLSGMERD 1004
+EL A RE S + ++R+ Q + LE ++ + L+ L +E++
Sbjct: 800 EELEEAER--RLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKE 857
Query: 1005 LAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKERDAKLEEAGDL 1064
L ++ +L+ LEAE +E E E E E +++R + +L ++ +E + E L
Sbjct: 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRER---L 914
Query: 1065 HRFLRDLDHFQVWLTKTQTDVASEDTPSSLADAEKLLNQHQAIREEIDNYT-------ED 1117
L+ +V L + + ++ E + + E+ + + + E + E+
Sbjct: 915 EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEE 974
Query: 1118 YKKMMDYGEKVTAEPSTHDDPQYMFLRERLKALRDGWEELHKMWENR 1164
++ + + Q L E + L + EEL K R
Sbjct: 975 VEERYEELKS-----------QREDLEEAKEKLLEVIEELDKEKRER 1010
Score = 37.0 bits (86), Expect = 0.16
Identities = 45/262 (17%), Positives = 103/262 (39%), Gaps = 37/262 (14%)
Query: 1455 DKMEEIVVKKSAVEQRFEKIKEPLLARQRALEKKKEAYQFRRDIEDEKLWIAEKLPSAKS 1514
+ +E + +E++ EK++ +R E K E R++E L K
Sbjct: 186 ENLERLEDLLEELEKQLEKLERQAEKAERYQELKAE----LRELELALLLAKLK---ELR 238
Query: 1515 TEYGNSLFNVHMLKKKNQSLAKEIDNHEPRINLICNNGRKLIDEGHEDSAEFTSLIEDLM 1574
E + L+++ + L +E++ E I + + +L +E E E L E++
Sbjct: 239 KELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIE 298
Query: 1575 DRWQQLKKAVDERRSKLIQSEKAQQYLFDASEAESWMSEQELYMMVEDRGKDEISTQNLM 1634
+ ++ + + E+ ++ L + L
Sbjct: 299 ELEGEISLLRERLEELENELEELEERL-----------------------------EELK 329
Query: 1635 KKHETLELAVEDYADTIRQLGETARQLTSEMHPESDQIALKQSQVDKLYAGLKDLAGERR 1694
+K E L+ +E+ + +L + +L ++++ ++++L+ L++ E
Sbjct: 330 EKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELE 389
Query: 1695 AKLDEAL-KLFMLNREVDDLEQ 1715
A+L E +L L RE++ LE+
Sbjct: 390 AELAEIRNELEELKREIESLEE 411
Score = 34.7 bits (80), Expect = 0.70
Identities = 47/296 (15%), Positives = 115/296 (38%), Gaps = 23/296 (7%)
Query: 993 TLQRRLSGMERDLAA-----IQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQL 1047
L+ L +E L ++ +L+ LE E +E+E E E + E K+I + +L
Sbjct: 217 ELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSEL 276
Query: 1048 TQMLKERDAKLEEAGDLHRFLRDLDHFQVWLTKTQTDVASEDTPSSLADAEKLLNQHQAI 1107
++ +E + EE +L + +L+ ++ L + + + + E+L + +A+
Sbjct: 277 EELREELEELQEELLELKEEIEELEG-EISLLRERLEELENELEELEERLEELKEKIEAL 335
Query: 1108 REEIDNYTEDYKKMMDYGEKVTAEPSTHDDPQYMFLRERLKALRDGWEELHKMWENRQQL 1167
+EE++ +++ ++ L E+L AL + EEL +
Sbjct: 336 KEELEERETLLEELEQLLAELEEAKEE--------LEEKLSALLEELEELFEALREELAE 387
Query: 1168 LS--QSLNLQMFNRDAKQAEVLLSQQEHVLSKDETPVNLEQVENLIKRHEAFLTTMEAND 1225
L + ++ E L + E + + E + E L + +
Sbjct: 388 LEAELAEIRNELEELKREIESLEERLERLSERLE-----DLKEELKELEAELEELQTELE 442
Query: 1226 DKINGVVQFADRLNDEDHYAADKVKKKADNINDRRNANKE--RAHQQMETLKDQLQ 1279
+ + + ++L + + ++ A+ + + KE +++ L+ + +
Sbjct: 443 ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498
Score = 33.5 bits (77), Expect = 2.0
Identities = 50/310 (16%), Positives = 113/310 (36%), Gaps = 26/310 (8%)
Query: 395 ERLEKAEHERELALREELIRQEKLEQLAARFNRKASMRETWLSENQRLVSQDNFGFDLGA 454
++ E E E ELA E + + + E + + ++ Q +
Sbjct: 665 QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE 724
Query: 455 VEAAAKKHEAIETDIFAYEERVQAVVTVSQELEAEKYHDIDRINARKENVLRLWNYLLEL 514
+ A ++ E +++ + EE ++ + +EL+ + + + +E + +L + EL
Sbjct: 725 LAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEEL 784
Query: 515 LKARRMRLESSLQLQQSFQEMLYILDSMEELKMRLLSDDYGKHLMGVEDLLQKHSLVEAD 574
+ R+ E +L++ +E E ++ L + E L Q+ +E +
Sbjct: 785 EEKRQALQEELEELEEELEEA--------ERRLDALERELESLEQRRERLEQEIEELEEE 836
Query: 575 INVLGERVKSVVQQSQRFLDEETN-----EGFRPCDPAIIVERVQQLEDAYSELVKLAVE 629
I L E++ + ++ + E E ++LED EL + E
Sbjct: 837 IEELEEKLDELEEELEELEKELEELKEELEELE--------AEKEELEDELKELEEEKEE 888
Query: 630 RRARLEE-SRKLWQLYWDMADEENWI----KEKEQIVSTGDIGHDLTTINLLLSKHKALE 684
L E +L +L ++ + + E++ + + LE
Sbjct: 889 LEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELE 948
Query: 685 DEIQAHESQL 694
EI+ E ++
Sbjct: 949 REIERLEEEI 958
Score = 33.1 bits (76), Expect = 2.6
Identities = 75/383 (19%), Positives = 155/383 (40%), Gaps = 35/383 (9%)
Query: 990 GIMTLQRRLSGMERDLAAIQAKLDSLEA---------EAVAIEKEHPEEAEAIRERIK-- 1038
G+ + R ER L + L+ LE E + + E E + ++ ++
Sbjct: 166 GVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELREL 225
Query: 1039 QIRIIWEQLTQMLKERDAKLEEAGDLHRFLRDLDHFQVWLTKTQTDVASEDTPSSLADAE 1098
++ ++ +L ++ KE + EE L L +L E+ + + E
Sbjct: 226 ELALLLAKLKELRKELEELEEELSRLEEELEEL---------------QEELEEAEKEIE 270
Query: 1099 KLLNQHQAIREEIDNYTEDYKKMMDYGEKVTAEPSTHDDPQYMFLRERLKALRDGWEELH 1158
+L ++ + +REE++ E+ ++ + E++ E S + L L+ L + EEL
Sbjct: 271 ELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE-ELENELEELEERLEELK 329
Query: 1159 KMWENRQQLLSQSLNLQMFNRDAKQAEVLLSQQEHVLSKDETPVNLEQVENLIKRHEAFL 1218
+ E ++ L + L + AE+ +++E +++ LE++E L + L
Sbjct: 330 EKIEALKEELEERETLLE-ELEQLLAELEEAKEEL---EEKLSALLEELEELFEALREEL 385
Query: 1219 TTMEANDDKINGVVQFADR-LNDEDHYAADKVKKKADNINDRRNANKERAHQQMETLKDQ 1277
+EA +I ++ R + + ++ D + + E Q E +
Sbjct: 386 AELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELN 445
Query: 1278 LQLHQFLQDCEELGEWVQEKK---FTAQDETYRSAKTVHSKWTRHQAFEAEIASNKDRLL 1334
+L + + EEL + ++E + Q+E R K + S R EAE +++
Sbjct: 446 EELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRA 505
Query: 1335 RVQQSGSELMKEKPELAELIGPK 1357
++ S L +AELI K
Sbjct: 506 VLEALESGLPGVYGPVAELIKVK 528
>gnl|CDD|241421 cd13267, PH_DOCK-D, Dedicator of cytokinesis-D subfamily Pleckstrin
homology (PH) domain. DOCK-D subfamily (also called
Zizimin subfamily) consists of Dock9/Zizimin1,
Dock10/Zizimin3, and Dock11/Zizimin2. DOCK-D has a
N-terminal DUF3398 domain, a PH-like domain, a Dock
Homology Region 1, DHR1 (also called CZH1), a C2 domain,
and a C-terminal DHR2 domain (also called CZH2). Zizimin1
is enriched in the brain, lung, and kidney; zizimin2 is
found in B and T lymphocytes, and zizimin3 is enriched in
brain, lung, spleen and thymus. Zizimin1 functions in
autoinhibition and membrane targeting. Zizimin2 is an
immune-related and age-regulated guanine nucleotide
exchange factor, which facilitates filopodial formation
through activation of Cdc42, which results in activation
of cell migration. No function has been determined for
Zizimin3 to date. The N-terminal half of zizimin1 binds
to the GEF domain through three distinct areas, including
CZH1, to inhibit the interaction with Cdc42. In addition
its PH domain binds phosphoinositides and mediates
zizimin1 membrane targeting. DOCK is a family of proteins
involved in intracellular signalling networks. They act
as guanine nucleotide exchange factors for small G
proteins of the Rho family, such as Rac and Cdc42. There
are 4 subfamilies of DOCK family proteins based on their
sequence homology: A-D. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 125
Score = 40.4 bits (95), Expect = 0.002
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 2175 SNRSWDKIFVSLR-----GTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVADDYSK 2229
+ +S+ + F L+ +L FYKD+KS ++ IY + T V + +
Sbjct: 26 AMKSFKRRFFHLKQLVDGSYILEFYKDEKSKEAKGTIYLDSCT---------GVVQNSKR 76
Query: 2230 KKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNVCEQQ 2268
+K F ++ +G Y+ A+++ EM+ W++ L+ + +
Sbjct: 77 RKFCFELRMQDGKSYVLAAESESEMDDWISKLNKILQIN 115
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 43.2 bits (102), Expect = 0.002
Identities = 107/677 (15%), Positives = 265/677 (39%), Gaps = 81/677 (11%)
Query: 830 RYKELLELAKLRKQRLLDALSLYKLFSEADGVQQWIGEKDRMLATMVPGKDIEDVEIMKH 889
+ L+ ++ +LD L + + + + + E + + + + E+++
Sbjct: 144 EFDAFLKSKPKERKEILDELFGLEKYEKLS---ELLKEVIKEAKAKIEELEGQLSELLE- 199
Query: 890 RYDGFDKEMNANASRVAVVNQLARQLLHVEHPNSEQIVTRQNQLNHDWAGLREKAEGKRD 949
+ + A + + +L E EQ + + + +E+ E +
Sbjct: 200 ---DIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKA 256
Query: 950 ELNSAHGVQTFHIECRETVSWIEDKKRILQSTDSLEMDLTG----IMTLQRRLSGMERDL 1005
L ++ ++ RE + + +R+L+ + L I L+ L G+ L
Sbjct: 257 RLLEIESLELEALKIREEE--LRELERLLEELEEKIERLEELEREIEELEEELEGLRALL 314
Query: 1006 AAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKERDAKLEEAGDLH 1065
++ L+ L++ +EK E+ E + ++++ +L ++L+ER +LEE
Sbjct: 315 EELEELLEKLKSLEERLEKLE-EKLEKLESELEELAEEKNELAKLLEERLKELEE----- 368
Query: 1066 RFLRDLDHFQVWLTKTQTDVASEDTPSSLADAEKLLNQHQAIREEIDNYTEDYKKMMDYG 1125
L+ + L K E+L +AI+E + E + +
Sbjct: 369 ----RLEELEKELEK---------------ALERLKQLEEAIQELKEELAELSAALEEIQ 409
Query: 1126 EKVTAEPSTHDDPQYMFLRERLKALRDGWEELHKMWENRQQLLSQSLNLQMFNRDAKQAE 1185
E++ ++ L L+ L EE+ K+ E QL S+ L + ++
Sbjct: 410 EELEELEKELEE-----LERELEELE---EEIKKLEEQINQLESKELMIAELAGAGEKCP 461
Query: 1186 VL---LSQQEHVLSKDETPVNLEQVENLIKRHEAFLTTMEANDDKINGVVQFADRLNDED 1242
V L ++ + + LE++E + R + E ++ + + + L +
Sbjct: 462 VCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELL 521
Query: 1243 HYAADKVKKKADNINDRRNANKERAHQQMETLKDQLQLHQFLQDCEELGEWVQEKKFTAQ 1302
++ + + N +E + + QL+ + L+ E+ ++
Sbjct: 522 ELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLK--EELRQLEDR-----LQELKEL 574
Query: 1303 DETYRSAKTVHSKWTRHQAFEAEIASNKDRLLRVQQSGSELMKEKPELAELIGPKISDLG 1362
E R + + E+ ++RL +++ EL + +L EL+ + +L
Sbjct: 575 LEELRLL----------RTRKEELEELRERLKELKKKLKELEERLSQLEELL--QSLELS 622
Query: 1363 QQFDDLETTTKDKGERLFDSNREVLIHQTCDDIDSWMNELEKQIENEDTGSDLASVNILM 1422
+ ++LE ++ L N + + + + + + ELE+++E + A + +
Sbjct: 623 EAENELEEAEEELESELEKLNLQAELEEL---LQAALEELEEKVEELE-----AEIRREL 674
Query: 1423 QKQQMIETQMAVKAKQVSELETQAEILQKTVPDKMEEIVVKKSAVEQRFEKIKEPLLARQ 1482
Q+ + E Q+ K +++ +LE + E L+ +++EE++ K +EQ E+++ +
Sbjct: 675 QRIENEE-QLEEKLEELEQLEEELEQLR----EELEELLKKLGEIEQLIEELESRKAELE 729
Query: 1483 RALEKKKEAYQFRRDIE 1499
++ ++ + +E
Sbjct: 730 ELKKELEKLEKALELLE 746
Score = 31.7 bits (72), Expect = 6.0
Identities = 90/647 (13%), Positives = 229/647 (35%), Gaps = 83/647 (12%)
Query: 994 LQRRLSGMERDLAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKE 1053
L L +E L A++ +L L+ E++ EE E E +++ E+ + L+E
Sbjct: 194 LSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEE 253
Query: 1054 RDAKLEEAGDLH-----RFLRDLDHFQVWLTKTQTDVAS-EDTPSSLADAEKLLNQHQAI 1107
A+L E L +L + L + + + E+ + + E+ L +A+
Sbjct: 254 LKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRAL 313
Query: 1108 REEIDNYTEDYKKMMDYGEKVTAEPSTHDDPQYMFLRERLKALRDGWEELHKMWENRQQL 1167
EE++ E K L ERL+ L + E+L E+ +
Sbjct: 314 LEELEELLEKLKS----------------------LEERLEKLEEKLEKL----ESELEE 347
Query: 1168 LSQSLNLQMFNRDAKQAEVLLSQQEHVLSKDETPVNLEQVENLIKRHEAFLTTMEANDDK 1227
L++ N + + ++ + E LE+++ L + + +
Sbjct: 348 LAEEKNEL---AKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAA 404
Query: 1228 INGVVQFADRLNDEDHYAADKVKKKADNINDRRNANKERAHQQMETLKDQLQLHQFLQDC 1287
+ + + + L E ++++++ + + + +E+ +Q +L + C
Sbjct: 405 LEEIQEELEELEKE----LEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKC 460
Query: 1288 EELGEWVQEKKFTAQDETYRSAKTVHSKWTRHQAFEAEIASNKDRLLRVQQSGSELMKEK 1347
G+ + E+ E Y + E E++ K+ ++ EL KE
Sbjct: 461 PVCGQELPEEHEKELLELYELE---------LEELEEELSREKEEAELREEI-EELEKEL 510
Query: 1348 PELAELIGPKISDLGQQFDDLETTTKDKGERLFDSNREVLIHQTCDDIDSWMNELEKQI- 1406
EL E + + ++LE + N + + + + + E +
Sbjct: 511 RELEEELIELLELEEALKEELEEKLEK------LENLLEELEELKEKLQLQQLKEELRQL 564
Query: 1407 -----ENEDTGSDLASVNILMQKQQMIETQMAVKAKQVSELETQAEILQKTVPDKMEEIV 1461
E ++ +L + ++ + + ++ K++ ELE + L++ + +
Sbjct: 565 EDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLE--LS 622
Query: 1462 VKKSAVEQRFEKIKEPLLARQRALEKKKEAYQFRRDIEDEKLWIAEKLPSAKSTEYGNSL 1521
++ +E+ E+++ L E ++ ++E++ + +
Sbjct: 623 EAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAE------------- 669
Query: 1522 FNVHMLKKKNQSLAKEIDNHEPRINLICNNGRKLIDEGHEDSAEFTSLIEDLMDRWQQLK 1581
+ ++ ++ + + + +L +E E + + + + ++L+
Sbjct: 670 --IRRELQRIENEEQLE-EKLEELEQLEEELEQLREELEELLKKLGEIEQLI----EELE 722
Query: 1582 KAVDERRSKLIQSEKAQQYLFDASEAESWMSEQELYMMVEDRGKDEI 1628
E + EK ++ L E + + L + +I
Sbjct: 723 SRKAELEELKKELEKLEKALELLEELREKLGKAGLRADILRNLLAQI 769
>gnl|CDD|241455 cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH)
domain, repeat 1. Pleckstrin is a protein found in
platelets. This name is derived from platelet and
leukocyte C kinase substrate and the KSTR string of amino
acids. Pleckstrin 2 contains two PH domains and a DEP
(dishvelled, egl-10, and pleckstrin) domain. Unlike
pleckstrin 1, pleckstrin 2 does not contain obvious sites
of PKC phosphorylation. Pleckstrin 2 plays a role in
actin rearrangement, large lamellipodia and peripheral
ruffle formation, and may help orchestrate cytoskeletal
arrangement. The PH domains of pleckstrin 2 are thought
to contribute to lamellipodia formation. This cd contains
the first PH domain repeat. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 108
Score = 39.7 bits (93), Expect = 0.002
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 33/115 (28%)
Query: 2158 EGTLVRK----HEWEAIAKRASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPE--IYYKNE 2211
EG LV+K + W+A W FV L L Y+ +K SSP+ I K
Sbjct: 6 EGFLVKKGHVVNNWKAR--------W---FVLLEDKLEYY---KKKTDSSPKGMILLKGC 51
Query: 2212 T---PFELRGGSAQVADDYSKKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSN 2263
T P +Y K+ VF++ G ++ QA + EE + W ++
Sbjct: 52 TITSPCL----------EYEKRPLVFKLTTAKGQDHFLQACSREERDAWAKDITK 96
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and C-terminal
domains of this protein are well conserved, but the
central hinge region is skewed in composition and highly
divergent [Cellular processes, Cell division, DNA
metabolism, Chromosome-associated proteins].
Length = 1164
Score = 43.1 bits (102), Expect = 0.002
Identities = 52/294 (17%), Positives = 112/294 (38%), Gaps = 53/294 (18%)
Query: 994 LQRRLSGMERDLAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKE 1053
L+ RL G++R+L+++Q++L IE E ++ + + ++I I +++ Q+ +E
Sbjct: 679 LRERLEGLKRELSSLQSELRR-------IENRLDELSQELSDASRKIGEIEKEIEQLEQE 731
Query: 1054 RDAKLEEAGDLHRFLRDLDHFQVWLTKTQTDVASEDTPSSLADAEKLLNQHQAIREEIDN 1113
+ E +L L + E+ S L + E I+
Sbjct: 732 EEKLKERLEELEEDLS------------SLEQEIENVKSELKELEA----------RIEE 769
Query: 1114 YTEDYKKMMDYGEKVTAEPSTHDDPQYMFLRERLKALRDGWE--------ELHKMWENRQ 1165
ED K+ + + A S P+ +L+ E +L+++ ++
Sbjct: 770 LEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE 829
Query: 1166 QLLSQSLNLQMFNRDAKQAEVLLSQQEHVLSKDETPVNLEQVENLIKRHEAFLTTMEAND 1225
L + LQ D K+ + ++ L+ E++E ++ EA L +E+
Sbjct: 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK-----KEELEEELEELEAALRDLESRL 884
Query: 1226 DKINGVVQFADRLNDEDHYAADKVKKKADNINDRRNANKERAHQQMETLKDQLQ 1279
+ +R E + K + A E+ +++ LK +L+
Sbjct: 885 GDLKK-----ERDELEAQLRELERKI------EELEAQIEKKRKRLSELKAKLE 927
Score = 42.0 bits (99), Expect = 0.004
Identities = 46/270 (17%), Positives = 96/270 (35%), Gaps = 40/270 (14%)
Query: 876 VPGKDIEDVEIMKHRYDGFDKEMNANASRVAVVNQL---ARQLLHVEHPNSEQIVTRQNQ 932
+ +++ ++ R +G +E+++ S + + Q L +I Q
Sbjct: 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ 727
Query: 933 LNHDWAGLREKAEGKRDELNSAHGVQTFHIECRETVSWIEDKKRILQSTDSLEMDLTGIM 992
L + L+E+ E ++L IE+ K L+
Sbjct: 728 LEQEEEKLKERLEELEEDL-------------SSLEQEIENVKSELK------------- 761
Query: 993 TLQRRLSGMERDLAAIQAKLDSLEAE-AVAIEKEHPEEAEAIRERIKQIRIIWEQLTQML 1051
L+ R+ +E DL ++ L+ LEA + + E E + E + +I ++ Q L
Sbjct: 762 ELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL 821
Query: 1052 KERDAKLE----EAGDLHRFLRDLDHFQVWLTKTQTDVAS--EDTPSSLADAEKLLNQ-- 1103
+ E E +L DL + K ++ E+ L + E L
Sbjct: 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
Query: 1104 --HQAIREEIDNYTEDYKKMMDYGEKVTAE 1131
+++E D +++ E++ A+
Sbjct: 882 SRLGDLKKERDELEAQLRELERKIEELEAQ 911
Score = 36.2 bits (84), Expect = 0.27
Identities = 46/274 (16%), Positives = 112/274 (40%), Gaps = 15/274 (5%)
Query: 795 NYASTIEALRNQASQLGDQDKESPEVLERLASIEFRYKELLELAKLRKQRLLDALS-LYK 853
S L+ +L +E + L IE R EL + +++ + + +
Sbjct: 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ 727
Query: 854 LFSEADGVQQWIGEKDRMLATMVPGKDIEDVEIMKHRYDGFDKEMNANASRV-AVVNQLA 912
L E + +++ + E + L+++ ++IE+V+ + +E+ + ++ +N L
Sbjct: 728 LEQEEEKLKERLEELEEDLSSL--EQEIENVKSELKELEARIEELEEDLHKLEEALNDLE 785
Query: 913 RQLLHVEHPNSEQIVTRQNQLNHDWAGLREKAEGKRDELNSAHGVQTFHIECRETVSWIE 972
+L H P + +++ + + E K LN + + + + E
Sbjct: 786 ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQK---LNRLTLEKEYLEKEIQ-----E 837
Query: 973 DKKRILQSTDSLEMDLTGIMTLQRRLSGMERDLAAIQAKLDSLEAEAVAIEKE---HPEE 1029
+++ + + ++ I L + +E +L ++A L LE+ ++KE +
Sbjct: 838 LQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ 897
Query: 1030 AEAIRERIKQIRIIWEQLTQMLKERDAKLEEAGD 1063
+ +I+++ E+ + L E AKLE +
Sbjct: 898 LRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
Score = 35.0 bits (81), Expect = 0.56
Identities = 54/278 (19%), Positives = 112/278 (40%), Gaps = 21/278 (7%)
Query: 1420 ILMQKQQMIETQMAVKAKQVSELETQAEILQKTVPDKMEEIVVKKSAVEQRFEKIKEPLL 1479
L+++++ +E Q +Q++ LE + E L + + + + + + +E+ +KIK+
Sbjct: 227 ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE 286
Query: 1480 ARQRALEKK-----KEAYQFRRDIEDEKLWI---AEKLPSAKSTEYGNSLFNVHMLKKKN 1531
Q +++K E R I +++ + E+L ++ E L + L+++
Sbjct: 287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA-EIDKLLAEIEELEREI 345
Query: 1532 QSLAKEIDNHEPRINLICNNGRKLIDEGHEDSAEFTSLIEDLMDRWQQLKKAVDERRSKL 1591
+ K D + L E E EF ++L D ++L+K E
Sbjct: 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405
Query: 1592 IQSEKAQQYLFDASEAESWMSEQ---------ELYMMVEDRGKDEISTQNLMKKHETLEL 1642
+ ++ Q+ L SE + ++ EL ED+ EI Q K E L
Sbjct: 406 RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA-LEIKKQE--WKLEQLAA 462
Query: 1643 AVEDYADTIRQLGETARQLTSEMHPESDQIALKQSQVD 1680
+ Y + L E ++ E+ ++A ++Q
Sbjct: 463 DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
Score = 34.3 bits (79), Expect = 0.91
Identities = 37/215 (17%), Positives = 91/215 (42%), Gaps = 19/215 (8%)
Query: 1277 QLQLHQFLQDCEELGEWVQEKKFTAQDETYRSAKTVHSKWTRHQAFEAEIASNKDRLLRV 1336
+ LH+ + +L + + + S+ +A EI +RL
Sbjct: 771 EEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRI---EARLREIEQKLNRLTLE 827
Query: 1337 QQSGSELMKEKPELAELIGPKISDLGQQFDDLETTTKDKGERLFDSNREVLIHQTCDDID 1396
++ + ++E E + +I + ++ ++L ++ E L + + D++
Sbjct: 828 KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR------DLE 881
Query: 1397 SWMNELEKQIENEDTGSDLASVNILMQKQQMIETQMAVKAKQVSELETQAEILQKTV--- 1453
S + +L+K+ + + A + L +K + +E Q+ K K++SEL+ + E L++ +
Sbjct: 882 SRLGDLKKERDELE-----AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
Query: 1454 --PDKMEEIVVKKSAVEQRFEKIKEPLLARQRALE 1486
P +E + ++ + + + + RALE
Sbjct: 937 EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE 971
Score = 33.9 bits (78), Expect = 1.3
Identities = 52/356 (14%), Positives = 131/356 (36%), Gaps = 56/356 (15%)
Query: 1323 EAEIASNKDRLLRVQQSGSELMKEKPELAELIGPKISDLGQQFDDLETTTKDKGERLFDS 1382
E + L + E+ KE E + + L ++ ++LE + + +
Sbjct: 701 ENRLDELSQELSDASRKIGEIEKE----IEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
Query: 1383 NREVLIHQTCDDIDSWMNELEKQIENEDTGSDLASVNILMQKQQMIETQMAVKAKQVSEL 1442
E+ ++++ + ELE+ + + + + + I+ +++ ++VS +
Sbjct: 757 KSEL------KELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRI 810
Query: 1443 ETQAEILQKTVPDKMEEIVVKKSAVEQRFEKIKEPLLARQRALEKKKEAYQFRRDIEDEK 1502
E + + E+ + + + ++ EK + L ++ L+++ ++ ++IE+
Sbjct: 811 EARLREI--------EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS--IEKEIENLN 860
Query: 1503 LWIAEKLPSAKSTEYGNSLFNVHMLKKKNQSLAKEIDNHEPRINLICNNGRKLIDEGHED 1562
E + E + L+ + L KE D E R+L + E
Sbjct: 861 GKKEELEEELEELEA-----ALRDLESRLGDLKKERDELE-------AQLRELERKIEEL 908
Query: 1563 SAEFTSLIEDLMDRWQQLKKAVDERRSKLIQSEKAQQYLFDASEAESWMSEQELYMMVE- 1621
A+ IE R +LK ++ +L + E + D E +S +++ ++
Sbjct: 909 EAQ----IEKKRKRLSELKAKLEALEEELSEIEDPKGE--DEEIPEEELSLEDVQAELQR 962
Query: 1622 ----------------DRGKDEISTQN-LMKKHETLELAVEDYADTIRQLGETARQ 1660
++ + + L +K LE + + I + + R+
Sbjct: 963 VEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
Score = 33.9 bits (78), Expect = 1.4
Identities = 43/258 (16%), Positives = 105/258 (40%), Gaps = 18/258 (6%)
Query: 819 EVLERLASIEFRYKELL-ELAKLRKQRLLDALSLYKLFSEADGVQQWI--GEKDRMLATM 875
EV E + ++ E +L +LR++R A L E + + EK+ +
Sbjct: 181 EVEENIERLDLIIDEKRQQLERLRRERE-KAERYQALLKEKREYEGYELLKEKEALERQK 239
Query: 876 VPG-KDIEDVEIMKHRYDGFDKEMNANASRVAVVNQLARQL-LHVEHPNSEQIVTRQNQL 933
+ + +E + +E++ R+ + QL +L ++ E+ + + ++
Sbjct: 240 EAIERQLASLEEEL---EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI 296
Query: 934 NHDWAGLREKAEGKRDELNSAHGVQTFHIECRETVSWIEDKKRILQSTDSLEMDLTGIMT 993
+ E E ++ + + I+ ++L + LE ++
Sbjct: 297 -GELEAEIASLERSIAEKERE--LEDAEERLAKLEAEID---KLLAEIEELEREIE---E 347
Query: 994 LQRRLSGMERDLAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKE 1053
++R + + A ++ +L+ L AE ++KE E + +++ +++ + ++ ++ +E
Sbjct: 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE 407
Query: 1054 RDAKLEEAGDLHRFLRDL 1071
D EE L L DL
Sbjct: 408 LDRLQEELQRLSEELADL 425
Score = 33.1 bits (76), Expect = 2.3
Identities = 50/310 (16%), Positives = 127/310 (40%), Gaps = 18/310 (5%)
Query: 1424 KQQMIETQMAVKAKQVSELETQAEILQKTVPDKMEEIVVKKSAVEQRFEKIKEPLLARQR 1483
++ E + K+ LE Q E +++ + EE+ + + ++++ L ++
Sbjct: 217 LKEKREYEGYELLKEKEALERQKEAIERQLASLEEEL----EKLTEEISELEKRLEEIEQ 272
Query: 1484 ALEKKKEAYQFRRDIEDEKLWIAEKLPSAKSTEYGNSLFNVHMLKKKNQSLAKEIDNHEP 1543
LE + + + E+E+L + EK+ ++ E + ++ +++ + + + E
Sbjct: 273 LLE--ELNKKIKDLGEEEQLRVKEKIGELEA-EIASLERSIAEKERELEDAEERLAKLEA 329
Query: 1544 RINLICNNGRKLIDEGHEDSAEFTSLIEDLMDRWQQLKKAVDERRSKLIQSEKAQQYLFD 1603
I + I+E + E + L + + +LK+ +++ R++L + +K D
Sbjct: 330 EI----DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD 385
Query: 1604 ASEAESWMSEQELYMMVEDRGKDEISTQNLMKKHETLELAVEDYADTIRQLGETARQLTS 1663
+ ++L + + + + L ++ + L + D I + +L
Sbjct: 386 ELKDY----REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
Query: 1664 EMHPESDQIALKQSQVDKLYAGLKDLAGERRAKLDEALKLFMLNREVDDLEQWIAEREVV 1723
E E + +K+ + KL DL+ + D + + +E+ L++ +AE E
Sbjct: 442 EK--EDKALEIKKQE-WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498
Query: 1724 AGSHELGQDY 1733
A + E
Sbjct: 499 ARASEERVRG 508
>gnl|CDD|241291 cd01260, PH_CNK_mammalian-like, Connector enhancer of KSR (Kinase
suppressor of ras) (CNK) pleckstrin homology (PH) domain.
CNK family members function as protein scaffolds,
regulating the activity and the subcellular localization
of RAS activated RAF. There is a single CNK protein
present in Drosophila and Caenorhabditis elegans in
contrast to mammals which have 3 CNK proteins (CNK1,
CNK2, and CNK3). All of the CNK members contain a sterile
a motif (SAM), a conserved region in CNK (CRIC) domain,
and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and, with the
exception of CNK3, a PH domain. A CNK2 splice variant
CNK2A also has a PDZ domain-binding motif at its C
terminus and Drosophila CNK (D-CNK) also has a domain
known as the Raf-interacting region (RIR) that mediates
binding of the Drosophila Raf kinase. This cd contains
CNKs from mammals, chickens, amphibians, fish, and
crustacea. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 114
Score = 39.3 bits (92), Expect = 0.002
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 2179 WDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVADDYSKKKHVFRVKA 2238
W + + L+G+ LY+Y + + K+ I N F++ S KKK+ F+
Sbjct: 33 WKRYWFVLKGSSLYWYNNPQDEKAEGFI---NLPDFKIERASEC------KKKYAFKASH 83
Query: 2239 DNGAEYLFQAKNDEEMNKWVTAL 2261
+ F A+N ++MNKW++ L
Sbjct: 84 PKIKTFYFAAENLDDMNKWLSKL 106
>gnl|CDD|241464 cd13310, PH_RalGPS1_2, Ral GEF with PH domain and SH3 binding motif 1
and 2 Pleckstrin homology (PH) domain. RalGPS1 (also
called Ral GEF with PH domain and SH3 binding motif
1;RALGEF2/ Ral guanine nucleotide exchange factor 2; RalA
exchange factor RalGPS1; Ral guanine nucleotide exchange
factor RalGPS1A2; ras-specific guanine
nucleotide-releasing factor RalGPS1) and RalGPS2 (also
called Ral GEF with PH domain and SH3 binding motif 2;
Ral-A exchange factor RalGPS2; ras-specific guanine
nucleotide-releasing factor RalGPS22). They activate
small GTPase Ral proteins such as RalA and RalB by
stimulating the exchange of Ral bound GDP to GTP, thereby
regulating various downstream cellular processes.
Structurally they contain an N-terminal Cdc25-like
catalytic domain, followed by a PXXP motif and a
C-terminal PH domain. The Cdc25-like catalytic domain
interacts with Ral and its PH domain ensures the correct
membrane localization. Its PXXP motif is thought to
interact with the SH3 domain of Grb2. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common fold,
which is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 116
Score = 39.2 bits (92), Expect = 0.003
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 14/120 (11%)
Query: 2157 MEGTLVRKHEWEAIAK---RASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETP 2213
M+G L RK + K + + SW + +V L GT L +Y KS + + +K+E P
Sbjct: 2 MQGCLRRK----TVLKEGRKPTVSSWQRYWVQLWGTSLVYYA-PKSLRGNERSDFKSE-P 55
Query: 2214 ---FELRGGSAQVADDYSKKKHVFR-VKADNGAEYLFQAKNDEEMNKWVTALSNVCEQQA 2269
+ G + DD + F+ + G Y F+A + W+ L + C+
Sbjct: 56 CKIVSISGWMVVLPDD-PEHPDSFQLTDPEKGNVYKFRAGSRSNALLWLKHLKDACKSNR 114
>gnl|CDD|241461 cd13307, PH2_AFAP, Actin filament associated protein family
Pleckstrin homology (PH) domain, repeat 2. There are 3
members of the AFAP family of adaptor proteins: AFAP1,
AFAP1L1, and AFAP1L2/XB130. AFAP1 is a cSrc binding
partner and actin cross-linking protein. AFAP1L1 is
thought to play a similar role to AFAP1 in terms of being
an actin cross-linking protein, but it preferentially
binds to cortactin and not cSrc, thereby playing a role
in invadosome formation. AFAP1L2 is a cSrc binding
protein, but does not bind to actin filaments. AFAP1L2
acts as an intermediary between the RET/PTC kinase and
PI-3kinase pathway in the thyroid. The AFAPs share a
similar structure of a SH3 binding motif, 3 SH2 binding
motifs, 2 PH domains, a coiled-coil region corresponding
to the AFAP1 leucine zipper, and an actin binding domain.
This cd is the second PH domain of AFAP. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common fold,
which is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 101
Score = 38.1 bits (89), Expect = 0.005
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 2175 SNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVADDYSKKKHVF 2234
N W + ++ L+FY+D+ KS + P LR G + K + F
Sbjct: 12 VNCQWRSRWCCVKDGQLHFYQDRNKLKSP-------QQPLPLR-GCEVIPGPDPKHPYSF 63
Query: 2235 RVKADNGAEY-LFQAKNDEEMNKWVTAL 2261
R+ NG E + +A + E+M +W+ L
Sbjct: 64 RI-LRNGEEVAVLEASSSEDMGRWLGLL 90
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino acids
in length. This family contains a P-loop motif suggesting
it is a nucleotide binding protein. It may be involved in
replication.
Length = 1198
Score = 40.4 bits (95), Expect = 0.014
Identities = 63/327 (19%), Positives = 111/327 (33%), Gaps = 59/327 (18%)
Query: 970 WIEDKKRILQSTDSLEMDL-TGIMTLQRRLSGMERDLAAIQAKLDSLEAEAVAIEKEHPE 1028
E K R+ Q +LE L L + LS LAA +++L+ LE + A E E
Sbjct: 286 RQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIE 345
Query: 1029 EAEAIRERIKQIRIIWEQLTQMLKERDAKLEEAGDLHRFLRDLDHFQVWLTKTQTDVASE 1088
+ +A +++ IR +L ++ DA + D+ R K +
Sbjct: 346 QLQADLDQLPSIR---SELEEVEARLDALTGKHQDVQR-------------KYERLKQKI 389
Query: 1089 DTPSSLADAEKLLNQHQAIREEIDNYTEDYKKMMDYGEKVTAEPSTHDDPQYMFLRERLK 1148
D EK + AIREE D + A LR++L
Sbjct: 390 KE-QLERDLEKNNERLAAIREEKD--------------RQKAAIEEDLQALESQLRQQL- 433
Query: 1149 ALRDGWEELHKMWENRQQLLSQSLNLQMFNRDAKQAEVLLSQQEHVLSKDETPVNLEQVE 1208
E + + L L L + + + E LE +
Sbjct: 434 ------EAGKLEFNEEEYELELRL------------GRLKQRLDSATATPEELEQLEIND 475
Query: 1209 NLIKRHEAFLTTMEANDDKINGVVQFADRLNDEDHYAADKVKKKADNINDRRNANKERAH 1268
+++ + EAN +++ ++ + DE A + +++ + R A E
Sbjct: 476 EALEKAQEEQEQAEANVEQLQSELRQLRKRRDE---ALEALQRAERRLLQLRQALDE-LE 531
Query: 1269 QQMETLKDQLQLHQFLQDCEELGEWVQ 1295
Q+ L FL++ E W +
Sbjct: 532 LQL--SPQAGSLLHFLRN--EAPGWEE 554
Score = 34.3 bits (79), Expect = 1.1
Identities = 130/716 (18%), Positives = 261/716 (36%), Gaps = 105/716 (14%)
Query: 1199 ETPVNLEQVENLIKRHEAFLTTMEANDDKINGVV-QFADRLNDEDHYAADKVKKKADNIN 1257
++ +N + VE+ I +A L ++ +I + F L+ E + AD
Sbjct: 220 KSRLNPQDVEHWIADIQA-LRAIQKVAPEIEKLQEDFEQLLSLELRLQHLHGELVADEER 278
Query: 1258 -----DRRNANKERAHQQMETLKDQLQLHQFLQDCEELGEWVQEKKFTAQDETYRSAKT- 1311
+ R K R QQ+ TL+DQL+ E E QE A + + ++
Sbjct: 279 LAEEQEERQEAKNRLRQQLRTLEDQLK--------EARDELNQELS--AANAKLAADRSE 328
Query: 1312 VHSKWTRHQAFE-AEIASNKDRLLRVQQSGSELMKEKPELAELIGPKISDLGQQFDDLET 1370
+ + AFE A+I + L ++ SEL + + L L G K D+ ++++ L+
Sbjct: 329 LELLEDQKGAFEDADIEQLQADLDQLPSIRSELEEVEARLDALTG-KHQDVQRKYERLKQ 387
Query: 1371 TTKDKGERLFDSNREVLIHQTCDDIDSWMNELEKQIENEDTGSDLASVNILMQKQQM-IE 1429
K++ ER + N E L + +K ED + + + ++ ++
Sbjct: 388 KIKEQLERDLEKNNERL------AAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFN 441
Query: 1430 TQMAVKAKQVSELETQAEILQKTVPDKMEEIVVKKSAVEQRFEKIKEPLLARQRALEKKK 1489
+ ++ L+ + + T P+++E++ + A+E+ E+ E A L+ +
Sbjct: 442 EEEYELELRLGRLKQRLDSATAT-PEELEQLEINDEALEKAQEEQ-EQAEANVEQLQSEL 499
Query: 1490 EAYQFRRDIEDEKLWIAEKLPSAKSTEYGNSLFNVH-MLKKKNQSLAKEIDNHEPRINLI 1548
+ RRD E L AE + + +L + L + SL + N P
Sbjct: 500 RQLRKRRDEALEALQRAE----RRLLQLRQALDELELQLSPQAGSLLHFLRNEAP---GW 552
Query: 1549 CNNGRKLIDE-------------GHEDSAEFTSLIEDL----MDRWQQLKKAVDERRSKL 1591
+ K+I DS + DL + + + + ER +
Sbjct: 553 EESIGKVISPELLERTDLDPQLVEGSDSDTLYGVSLDLQRLDVPDYAANETELRERLQQA 612
Query: 1592 ---IQSEKAQQYLFDASEAESWMSEQELYMMVEDRGKDEISTQNLMKKHETLELAVEDYA 1648
+QS A+Q +AE + + + E + A +
Sbjct: 613 EEALQSAVAKQ-----KQAEEQLVQ-------------------ANAELEEQKRAEAEAR 648
Query: 1649 DTIRQLGETARQLTSEMHPESDQI--------ALKQSQVDKLYAGLKDLAGERRAKLDEA 1700
++Q ++L +E D++ ++Q+ +L A LK L +++A L EA
Sbjct: 649 TALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFL-EA 707
Query: 1701 LKLFMLNREVDDLEQWI--------AEREVVAGSHELGQDYDHVTLLWERFKEFDRDTEA 1752
LK + L +W ++ A + K++DR+ +
Sbjct: 708 LKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELK--KQYDRELAS 765
Query: 1753 IGT--ERVAAV-NGIAD--QLIAAGHSDSATIAEWKDGLNEAWQDLLELIETRTQMLVAS 1807
+ V + I + I + E++ + E W L E R + +
Sbjct: 766 LDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQL 825
Query: 1808 RELHKFFHDCKDILGRISEKHHAMSDELGRDAGSVNTLQRKHQNFLQDLQTLQSQV 1863
REL + + L R+ + +L ++ ++ + L+ L+ Q+
Sbjct: 826 RELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQL 881
Score = 33.9 bits (78), Expect = 1.5
Identities = 108/697 (15%), Positives = 237/697 (34%), Gaps = 73/697 (10%)
Query: 1317 TRHQAFEAEIASNKDRLLR----VQQSGSELMKEKPELAELIGPKISDLGQQFDDLETTT 1372
+ + + +L ++++ EL +E + S+L D
Sbjct: 281 EEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAFE 340
Query: 1373 KDKGERLFDSNREVLIHQTCDDIDSWMNELEKQIENEDTGSDLASVNILMQKQQMIETQM 1432
E+L D + S +ELE+ A ++ L K Q ++ +
Sbjct: 341 DADIEQL---------QADLDQLPSIRSELEEVE---------ARLDALTGKHQDVQRKY 382
Query: 1433 -AVKAKQVSELETQAEILQKTVPDKMEEIVVKKSAVEQRFEKIKEPLLARQRA--LEKKK 1489
+K K +LE E + + EE +K+A+E+ + ++ L + A LE +
Sbjct: 383 ERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNE 442
Query: 1490 EAYQFRRDIEDEKLWIAEKLPSAKSTEYGNSLFNVHMLKKKNQSLAKEIDNHEPRINLIC 1549
E Y+ + K + +A E N L+K + + N E ++
Sbjct: 443 EEYELELRLGRLKQRLDS--ATATPEELEQLEINDEALEKAQEEQEQAEANVE-QLQSEL 499
Query: 1550 NNGRKLIDEGHEDSAEFTSLIEDLMDRWQQLKKAVDERRSKLIQSEKAQQYLFDASEAES 1609
RK DE E + L +L+ + + L+ + + ++ S +
Sbjct: 500 RQLRKRRDEALEALQRAERRLLQLRQALDELELQLSPQAGSLLHFLRNEAPGWEESIGKV 559
Query: 1610 WMSEQELYMMVEDRGKDEISTQNLMKKHETLE-LAVEDYADTIRQLGETARQLTSEMHPE 1668
E ++ + + + L L+ L V DYA +L E +Q +
Sbjct: 560 ISPELLERTDLDPQLVEGSDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSA 619
Query: 1669 SDQIALKQSQVDKLYAGLKDLAGERRAKLDEALKLFMLNREVDDLEQWIAEREVVAGSHE 1728
+ + Q+ + A L E++ EA R DL++ E++ + E
Sbjct: 620 VAKQKQAEEQLVQANAEL----EEQKRAEAEARTALKQAR--LDLQRLQNEQQSLKDKLE 673
Query: 1729 LGQDYDHVTLLWERFKEFDRDTEAIGTERVAAVNGIADQLIAAGHSDSATIAEWKDGLNE 1788
L + + ++ D + + ++ A + + D E +
Sbjct: 674 LAIA-ERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDF-----------RELRTERLA 721
Query: 1789 AWQDLLELIETRTQMLVASRELHKFFHDCKDILGRISEKHHAMSDEL---GRDAGSVNTL 1845
WQ + ++ + L A+ E + R+ E EL D +V L
Sbjct: 722 KWQVVEGELDNQLAQLSAAIEAARTQAK-----ARLKELKKQYDRELASLDVDPNTVKEL 776
Query: 1846 QRKHQNFLQDLQTLQSQVQQICNESAKLQASYAGEKAKEITNREAEVVNAWASLQNACDA 1905
+R+ + ++ + + ++ A +Q ++ + + L+++ +
Sbjct: 777 KRQIEELETTIERIAVRRPEVREYRAFMQETWL--HRDSLREERPNLAIQLRELESSAEE 834
Query: 1906 RKQKLGDTGDLFKFLIMVRTLMLWMDDVVRQMNTSEKARD-----VSGVELLMN--NHQS 1958
+Q+L +++ L + ++ EK D + G+ M
Sbjct: 835 LQQELTR---------LIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQLAELK 885
Query: 1959 LKAEIDTREDNFTACISLGKELLSRNHYASNEIKEKL 1995
A + E + + + +E + S ++K+ L
Sbjct: 886 EPANANQAEGSISERLDQLEEFKRKRKRLSGDLKKFL 922
>gnl|CDD|241417 cd13263, PH_RhoGap25-like, Rho GTPase activating protein 25 and
related proteins Pleckstrin homology (PH) domain.
RhoGAP25 (also called ArhGap25) like other RhoGaps are
involved in cell polarity, cell morphology and
cytoskeletal organization. They act as GTPase activators
for the Rac-type GTPases by converting them to an
inactive GDP-bound state and control actin remodeling by
inactivating Rac downstream of Rho leading to suppress
leading edge protrusion and promotes cell retraction to
achieve cellular polarity and are able to suppress RAC1
and CDC42 activity in vitro. Overexpression of these
proteins induces cell rounding with partial or complete
disruption of actin stress fibers and formation of
membrane ruffles, lamellipodia, and filopodia. This
hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25.
Members here contain an N-terminal PH domain followed by
a RhoGAP domain and either a BAR or TATA Binding Protein
(TBP) Associated Factor 4 (TAF4) domain. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common fold,
which is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 114
Score = 37.3 bits (87), Expect = 0.014
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 2177 RSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVADDYSKKKHVFRV 2236
++W + + LRG LY+YKD+ +K I T EL ++ K +F +
Sbjct: 17 KNWQRRWFVLRGDQLYYYKDEDESKPQGCIPLPGNTVKEL----PFNPEEPG--KFLFEI 70
Query: 2237 KADNGAE--------YLFQAKNDEEMNKWVTALSNVCEQQASGG 2272
+G YL A + EM +WV + V GG
Sbjct: 71 IPGDGGTRRSANHDSYLLMANSQAEMEEWVKVIRRVIGSPFGGG 114
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 40.1 bits (94), Expect = 0.018
Identities = 112/716 (15%), Positives = 236/716 (32%), Gaps = 109/716 (15%)
Query: 775 DEANVQSLLKKHKDVTEELKNYASTIEALRNQASQLGDQDKESPEVLERLASIE-FRYKE 833
+++ L + VTE K + +AL++ L ++++E +V +LA++ E
Sbjct: 334 AVESLRPSLAAKETVTELEKRKEALDQALKSARDALEERERELKQVRAQLAALPTVTVPE 393
Query: 834 LLELAKLRKQRLLDALSLY------------KLFSEADGVQQWIGEKDRMLATMVPGKDI 881
L A R D + +L + W G+ + ++A VP
Sbjct: 394 PLRAALADALRAGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLEELVALPVPSA-- 451
Query: 882 EDVEIMKHRYD-GFDKEMNANASRVAVVNQLARQLLHVEHPNSEQIVTRQNQLNHDWAGL 940
E V+ + + + + L L + H ++ V + ++ A
Sbjct: 452 EQVQAFLKEAEEIMQAKRQKRDRLLELEEDLETLELQLRHLDAAGAVPTEEEV----AAA 507
Query: 941 REKAEGKRDELNSAHGVQTFHIECRETVSWIEDKKRILQSTDSLEMDLTG-IMTLQRRLS 999
R + + ++ + + E D+ L E L G + +L+++
Sbjct: 508 RARRDALWQDIRRGYALLEPTASAYEEAVESADQ---LADRLLREAQLVGELQSLRQQEE 564
Query: 1000 GMERDLAAIQAKLDSLEAEAVAIEKEH------------PEEAEAIRERIKQIRIIWEQL 1047
R L ++ +L+ LE A+ + P E E R
Sbjct: 565 AARRRLEQLEKELEVLELALAALREAWQAQWAAAGLPLTPAEMEDWLAERATAREQVRAY 624
Query: 1048 TQMLKERDAKLEEAGDLHRFLRDLDHFQVWLTKTQTDVASEDTPSSLADAEKLLNQHQAI 1107
+ E DA L+ L LR L + E+ L A +LL + +
Sbjct: 625 FKARAELDALLDRRARLRAALRAA------LKAVAIVLPGEELAELLELARQLLEEAEKQ 678
Query: 1108 REEIDNYTEDYKKMMDYGEKVTAEPSTHDDPQYMFLRERLKALRDGWEELHKMWENRQQL 1167
+ E + E+ E + D + + W+ +
Sbjct: 679 AARKASLDE----RLRDAERA---------------LEEAEERHDEAQSALEAWQEQWYD 719
Query: 1168 LSQSLNLQMFNRDAKQAEVLLSQQEHVLSKDETPVNLEQ-VENLIKRHEAFLTTMEANDD 1226
L A A L +++ K + +L Q + + + F +EA +
Sbjct: 720 ALLEAGLGGRASPAG-ALDALELLQNIKEKLQAADDLRQRIAAMERDLARFEEEVEALAE 778
Query: 1227 KINGVVQFADRLNDEDHYAADKVKKKADNINDRRNANKERAHQQMETLKDQLQLHQFLQD 1286
+ + L A +K++ A E+ +++E + ++ +
Sbjct: 779 AVA-----PEMLGTPADETARALKQRLKR-ARDTAAAAEKLAEEIEEAEKEVS--EAAAA 830
Query: 1287 CEELGEWVQEKKFTAQDETYRSAKTVHSKWTRHQAFEAEIASNKDRLLRV--QQSGSELM 1344
+E + A+ T + ++ IA+ + L+R S L+
Sbjct: 831 LDEAEARLTALLRAARCTTIEELLAAVERSDTYRELRKRIAALERTLVRAGGGLSLEALV 890
Query: 1345 KEKPELAELIGPKISDLGQQFDDLETTTKDKGERLFDSNREVLIHQTCDDIDSWMNEL-- 1402
E L D+L RL + R++ ++++ +NEL
Sbjct: 891 AEAAAL-------------DPDELP-------ARLEELARDI------EELEEELNELAQ 924
Query: 1403 -----EKQIENEDTGSDLASVNILMQKQQMIETQMAVKAKQVSELETQAEILQKTV 1453
++++ D GS A L +++ + Q+ A++ EL + +L+K +
Sbjct: 925 EVGAAKQELARMDGGSTAA---ELEAERESLLAQLRDLAERYLELALASRLLRKAI 977
>gnl|CDD|241369 cd13215, PH-GRAM1_AGT26, Autophagy-related protein 26/Sterol
3-beta-glucosyltransferase Pleckstrin homology (PH)
domain, repeat 1. ATG26 (also called
UGT51/UDP-glycosyltransferase 51), a member of the
glycosyltransferase 28 family, resulting in the
biosynthesis of sterol glucoside. ATG26 in decane
metabolism and autophagy. There are 32 known
autophagy-related (ATG) proteins, 17 are components of
the core autophagic machinery essential for all
autophagy-related pathways and 15 are the additional
components required only for certain pathways or species.
The core autophagic machinery includes 1) the ATG9
cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and
ATG27), 2) the phosphatidylinositol 3-kinase complex
(ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the
ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7,
ATG8, ATG10, ATG12, and ATG16). Less is known about how
the core machinery is adapted or modulated with
additional components to accommodate the nonselective
sequestration of bulk cytosol (autophagosome formation)
or selective sequestration of specific cargos (Cvt
vesicle, pexophagosome, or bacteria-containing
autophagosome formation). The pexophagosome-specific
additions include the ATG30-ATG11-ATG17 receptor-adaptors
complex, the coiled-coil protein ATG25, and the sterol
glucosyltransferase ATG26. ATG26 is necessary for the
degradation of medium peroxisomes. It contains 2 GRAM
domains and a single PH domain. PH domains are only found
in eukaryotes. They share little sequence conservation,
but all have a common fold, which is electrostatically
polarized. PH domains also have diverse functions. They
are often involved in targeting proteins to the plasma
membrane, but few display strong specificity in lipid
binding. Any specificity is usually determined by loop
regions or insertions in the N-terminus of the domain,
which are not conserved across all PH domains. PH domains
are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 130
Score = 37.2 bits (87), Expect = 0.022
Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 2170 IAKRAS-NRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGG-SAQVADDY 2227
++KR +++ + L+G +L +Y +SS ++Y+ + T +LR G SA++ D
Sbjct: 35 LSKRGKRTPRYNRYWFVLKGDVLSWY------RSSTDLYFPHGT-IDLRYGISAEITDKD 87
Query: 2228 SKKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNV 2264
+ H F++ ++ Y F+A ++ +WV AL V
Sbjct: 88 KETTH-FKITTNSRT-YTFKADSEPSAKEWVKALQKV 122
>gnl|CDD|241453 cd13299, PH2_PH_fungal, Fungal proteins Pleckstrin homology (PH)
domain, repeat 2. The functions of these fungal proteins
are unknown, but they all contain 2 PH domains. This cd
represents the second PH repeat. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 102
Score = 36.5 bits (85), Expect = 0.023
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 19/100 (19%)
Query: 2172 KRASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVAD------ 2225
K+ W K ++ LR L FYKDQ K + + D
Sbjct: 16 KKKGVNQWKKYWLVLRNRSLSFYKDQSEYSP-----VKI---IPI----DDIIDVVELDP 63
Query: 2226 DYSKKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNVC 2265
KK ++ F A ++E + KW+ AL ++
Sbjct: 64 LSKSKKWCLQIITPE-KRIRFCADDEESLIKWLGALKSLL 102
>gnl|CDD|227765 COG5478, COG5478, Predicted small integral membrane protein [Function
unknown].
Length = 141
Score = 37.4 bits (87), Expect = 0.023
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 1003 RDLAAIQAKLDSL-------EAEAVAIEKEHPEEAEAIRERIKQI 1040
RD AAIQAKLD L + V IE PEE E IR+R++
Sbjct: 71 RDTAAIQAKLDELIRSLREARNDVVGIEHLKPEEIEEIRDRLEDE 115
>gnl|CDD|241265 cd01231, PH_SH2B_family, SH2B adapter protein 1, 2, and 3 Pleckstrin
homology (PH) domain. SH2B family/APS proteins are a
family of intracellular adaptor proteins that influences
a variety of signaling pathways mediated by Janus kinase
(JAK) and receptor tyrosine kinases (RTKs) including
receptors for insulin, insulin-like growth factor-1,
Janus kinase 2 (Jak2), platelet derived growth factor,
fibroblast growth factor and nerve growth factor. They
function in glucose homeostasis, energy metabolism,
hematopoesis and reproduction. Mutations in human SH2B
orthologs are associated with metabolic disregulation and
obesity. There are several SH2B members in mammals: SH2B1
(splice variants: SH2B1alpha, SH2B1beta, SH2B1gamma, and
SH2B1delta), SH2B2 (APS) and SH2B3 (Lnk). They contain a
PH domain, a SH2 domain, a proline rich region, multiple
consensus sites for tyrosine and serine/threonine
phosphorylation and a highly conserved c-Cbl recognition
motif. These domains function as protein-protein
interaction motifs which allows SH2B proteins to
integrate and transduce intracellular signals from
multiple signaling networks in the absence of intrinsic
catalytic activity. SH2B proteins bind via their SH2
domains to phosphotyrosine residues within the
intracellular tails of several activated RTKs thereby
contributing to receptor activation. SH2B proteins have
been shown to interact with insulin receptor substrates
IRS1 and IRS2, Grb2, Shc and c-Cbl which may or may not
require RTK-stimulated tyrosine phosphorylation of SH2B.
positively and negatively regulating RTK signaling.
Understanding the physiological functions of SH2B
proteins in mammals has been complicated by the presence
of multiple SH2B isoforms and conflicting data. Both
SH2-Bbeta and APS associate with JAKs, but the former
facilitates JAK/STAT signaling while the latter inhibits
it. Lnk plays a role in cell growth and proliferation
with mutations resulting in growth reduction,
developmental delay and female sterility. Recently Lnk
Drosophila has been shown to be an important regulator of
the insulin/insulin-like growth factor (IGF)-1 signaling
(IIS) pathway during growth. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 115
Score = 36.5 bits (85), Expect = 0.026
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 2230 KKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSN 2263
++ F +K +N EY+ +A ++++M W+ +
Sbjct: 77 NENTFVLKVENSTEYIIEAGDEQQMRSWLAEIRE 110
>gnl|CDD|241266 cd01233, PH_KIFIA_KIFIB, KIFIA and KIFIB protein pleckstrin homology
(PH) domain. The kinesin-3 family motors KIFIA
(Caenorhabditis elegans homolog unc-104) and KIFIB
transport synaptic vesicle precursors that contain
synaptic vesicle proteins, such as synaptophysin,
synaptotagmin and the small GTPase RAB3A, but they do not
transport organelles that contain plasma membrane
proteins. They have a N-terminal motor domain, followed
by a coiled-coil domain, and a C-terminal PH domain.
KIF1A adopts a monomeric form in vitro, but acts as a
processive dimer in vivo. KIF1B has alternatively spliced
isoforms distinguished by the presence or absence of
insertion sequences in the conserved amino-terminal
region of the protein; this results in their different
motor activities. KIF1A and KIF1B bind to RAB3 proteins
through the adaptor protein mitogen-activated protein
kinase (MAPK) -activating death domain (MADD; also
calledDENN), which was first identified as a RAB3 guanine
nucleotide exchange factor (GEF). PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 111
Score = 36.0 bits (84), Expect = 0.034
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 28/100 (28%)
Query: 2175 SNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRG----GSAQVADDYS-- 2228
+ W + +V LR L+ Y +K + RG +A+V +YS
Sbjct: 26 ATDGWVRRWVVLRRPYLHIYSSEKD--------------GDERGVINLSTARV--EYSPD 69
Query: 2229 -----KKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSN 2263
+ +VF V + YL QA++++EM+ W+ A+
Sbjct: 70 QEALLGRPNVFAVYTPTNS-YLLQARSEKEMHDWLYAIDP 108
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 38.9 bits (91), Expect = 0.039
Identities = 76/437 (17%), Positives = 167/437 (38%), Gaps = 45/437 (10%)
Query: 939 GLREKAEGKRDELNSAHGVQTFHIECRETVSWIED--KKRILQSTDSLEMDLTGIMTLQR 996
LRE+ E +E + E V + + R + D LE
Sbjct: 283 DLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNE 342
Query: 997 RLSGMERDLAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKERDA 1056
+ D ++ + + L EA +E E E EA+ +R ++I + E++ ++ +
Sbjct: 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402
Query: 1057 KLEEAGDLHRFLRDLDHFQVWLTKTQTDVASEDTPSSLADAEKLLNQHQAIREEIDNYTE 1116
+ G+ FL +L + + + A + ++L A + + + +A+ E
Sbjct: 403 APVDLGNAEDFLEEL---REERDELREREA--ELEATLRTARERVEEAEALLEA------ 451
Query: 1117 DYKKMMDYGEKVTAEP----STHDDPQYMFLRERLKALRDGWEELHKMWENRQQLLSQSL 1172
K + G+ V P D + L L+ L + EE+ + E + L+
Sbjct: 452 --GKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAED 509
Query: 1173 NLQMFNRDAKQAEVLLSQQEHVLSKDETPVNLEQVENLIKRHEAFLTTMEANDDKINGVV 1232
++ + E L++++ + + E+ E L +R E +
Sbjct: 510 RIERLEERREDLEELIAERRETIEEKR-----ERAEELRERAAELEAEAEEKREAAA--- 561
Query: 1233 QFADRLNDEDHYAADKVKKKADNINDRRNANKERAHQQMETLKDQLQLHQFLQDCEELGE 1292
E A++ +++ +N + KER + +E ++ L + D E+ E
Sbjct: 562 --------EAEEEAEEAREEVAELNSKLAELKERI-ESLERIRTLLAA---IADAEDEIE 609
Query: 1293 WVQEKKFTAQDETYRSAKTVHSKWTRHQAFEAEIASNKDRLLRVQQSGSELMKEKPELAE 1352
++EK+ + + + K R + EAE R++++ + + + L +
Sbjct: 610 RLREKREALAELNDERRERLAEKRERKRELEAEFDEA-----RIEEAREDKERAEEYLEQ 664
Query: 1353 LIGPKISDLGQQFDDLE 1369
+ K+ +L ++ DDL+
Sbjct: 665 -VEEKLDELREERDDLQ 680
Score = 33.5 bits (77), Expect = 1.5
Identities = 86/518 (16%), Positives = 189/518 (36%), Gaps = 52/518 (10%)
Query: 1393 DDIDSWMNELEKQIENEDTGSDLASVNILMQK----QQMIETQMAVKAKQVSELETQAEI 1448
D +++L+ QIE ++ +N L + + IE + + + E+
Sbjct: 183 SDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
Query: 1449 LQKTVPDKMEEIVVKKSAVEQRFEKIKEPLLARQRALEKKKEAYQFRRDIEDEKLWIAEK 1508
L+ ++ EE+ ++ +E E I E R+ E+ ++ + ++E+E +
Sbjct: 243 LE-EHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEE---RDDL 298
Query: 1509 LPSAKSTEYGNSLFNVHM--LKKKNQSLAKEIDNHEPRINLICNNG---RKLIDEGHEDS 1563
L A + L+ +++ L ++ R+ D+ E +
Sbjct: 299 LAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERA 358
Query: 1564 AEFTSLIEDLMDRWQQLKKAVDERRSKLIQSEKAQQYL---FDASEAESWMSEQELYMMV 1620
E +L ++ ++AV++RR ++ + E+ + L F + + +E L +
Sbjct: 359 EELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR 418
Query: 1621 EDRGKDEISTQNLMKKHETLELAVEDYADTIRQLGETARQLTS-----------EMHPES 1669
E+R L ++ LE + + + + A L E P
Sbjct: 419 EERD-------ELREREAELEATLRTARERVEE----AEALLEAGKCPECGQPVEGSPHV 467
Query: 1670 DQIALKQSQVDKLYAGLKDLAGER---RAKLDEALKLFMLNREVDDLEQWIAEREVVAGS 1726
+ I + +V++L A L+DL E +L+ A L ++ LE+ + E +
Sbjct: 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAE 527
Query: 1727 HELGQDYDHVTLLWERFKEFDRDTEAIGTERVAAVNGIADQ----LIAAGHSDSATIAEW 1782
+ R + + + EA AA + +A +S A + E
Sbjct: 528 RRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER 587
Query: 1783 KDGLNEAWQDLLELIETRTQMLVASRELHKFFHDC----KDILGRISEKHHAMSDELGRD 1838
+ L + LL I + RE + + ++ L E+ + E D
Sbjct: 588 IESLERI-RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEF--D 644
Query: 1839 AGSVNTLQRKHQNFLQDLQTLQSQVQQICNESAKLQAS 1876
+ + + + L+ ++ ++ ++ E LQA
Sbjct: 645 EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAE 682
>gnl|CDD|241277 cd01244, PH_GAP1-like, RAS p21 protein activator (GTPase activating
protein) family pleckstrin homology (PH) domain. RASAL1,
GAP1(m), GAP1(IP4BP), and CAPRI are all members of the
GAP1 family of GTPase-activating proteins. They contain
N-terminal SH2-SH3-SH2 domains, followed by two C2
domains, a PH domain, a RasGAP domain, and a BTK domain.
With the notable exception of GAP1(m), they all possess
an arginine finger-dependent GAP activity on the
Ras-related protein Rap1. They act as a suppressor of RAS
enhancing the weak intrinsic GTPase activity of RAS
proteins resulting in the inactive GDP-bound form of RAS,
allowing control of cellular proliferation and
differentiation. PH domains share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 107
Score = 35.7 bits (83), Expect = 0.050
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 2229 KKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNVC 2265
K K++F+V + YL QAKN E+N+W++AL VC
Sbjct: 64 KMKNMFQVVQPDRTLYL-QAKNVVELNEWLSALRKVC 99
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell surface
and is extremely large (although apparently lacking in
repeat structure) and is important for the process of
invasion of the RBCs by the parasite. These proteins are
found in P. falciparum, P. vivax and P. yoelii.
Length = 2757
Score = 38.5 bits (89), Expect = 0.054
Identities = 104/524 (19%), Positives = 219/524 (41%), Gaps = 77/524 (14%)
Query: 1195 LSKDETPVNLEQVENL----IKRHEAFLTTMEANDDKIN-GVVQFADRLND-EDHYAADK 1248
+ +DE + +++ + + + + F+ +KI+ QFA+ N + + DK
Sbjct: 825 IKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKIKAEISDDK 884
Query: 1249 VKKKADNINDRR------NANKERAHQQMETLKDQLQLHQFLQDCEELGEWVQE------ 1296
+ ND + N + E +Q + TLK ++ ++++ CE E +++
Sbjct: 885 LNDYEKKFNDSKSLINEINKSIEEEYQNINTLK---KVDEYIKICENTKESIEKFHNKQN 941
Query: 1297 ---KKFTAQDETYRSAKTVHSKWTRHQAFEAEIASNKDRLLRV---------QQSGSELM 1344
+ +T + + + + F+ + + L + + +EL+
Sbjct: 942 ILKEILNKNIDTIKESNLIEKSYK--DKFDNTLIDKINELDKAFKDASLNDYEAKNNELI 999
Query: 1345 KEKPELAELIG-PKISDLGQQFDDLETTTKDKGERLFDSNR-----EVLIHQTCDDIDSW 1398
K +L +G K + L QFD+ E T D +++ D+N+ E+ IH + +I
Sbjct: 1000 KYFNDLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIYNI--- 1056
Query: 1399 MNELEKQIENEDTGSDLASVNILMQKQQMIETQMAVKAKQVSELETQAEILQKTVPDKME 1458
++E+EK+I G ++ +N + ++ I + K+ + + ++ +
Sbjct: 1057 IDEIEKEI-----GKNIELLNKEILEEAEINITNFNEIKEKLKHYNFDDFGKEENIKYAD 1111
Query: 1459 EIVVKKSAVEQRFEKIKEPLLARQRALEKKKEAYQFRRDIEDEKLWIAEKLPSAKSTEYG 1518
EI K ++ +KI + A + ++KK E Y I++ K I + A
Sbjct: 1112 EINKIKDDIKNLDQKIDHHIKALEE-IKKKSENY-----IDEIKAQINDLEDVADKAISN 1165
Query: 1519 NSLFNVHMLKKKNQSLAKEIDNHEPRINLICNNGRKLIDEGHEDSAEFTSLIEDL---MD 1575
+ + ++KK +++ +ID + I + +KL++E E + TSL E +
Sbjct: 1166 D---DPEEIEKKIENIVTKIDKKK----NIYDEIKKLLNEIAEIEKDKTSLEEVKGINLS 1218
Query: 1576 RWQQLKK----AVDERRSKLIQSEKA-QQYLFDASEAESWMSEQELYMMVEDRGKDEIST 1630
+ L K +DE + K KA + Y+ D E + E E M +E K E+ T
Sbjct: 1219 YGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMET 1278
Query: 1631 QNLM----KKHETLELAVEDYADTIRQLGETARQLTSEMHPESD 1670
N+ K H + + + + I + E + ++ + ESD
Sbjct: 1279 FNISHDDDKDHHIIS---KKHDENISDIREKSLKIIEDFSEESD 1319
>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1
(AtPH1) PH domain. AtPH1 is expressed in all plant
tissue and is proposed to be the plant homolog of human
pleckstrin. Pleckstrin consists of two PH domains
separated by a linker region, while AtPH has a single PH
domain with a short N-terminal extension. AtPH1 binds
PtdIns3P specifically and is thought to be an adaptor
molecule since it has no obvious catalytic functions. PH
domains have diverse functions, but in general are
involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but all
have a common fold, which is electrostatically polarized.
Less than 10% of PH domains bind phosphoinositide
phosphates (PIPs) with high affinity and specificity. PH
domains are distinguished from other PIP-binding domains
by their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH domain
proteins to the plasma membrane. A few display strong
specificity in lipid binding. Any specificity is usually
determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 117
Score = 35.0 bits (81), Expect = 0.085
Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 2175 SNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETP-FELRGGSA-QVADDYSKKKH 2232
S ++W + + L+ L+++KD+ +L + A++ + K+
Sbjct: 19 SIKTWRRRWFVLKQGKLFYFKDED--------PDSEPRGVIDLSDCLTVKSAEEATNKEF 70
Query: 2233 VFRVKADNGAEYLFQAKNDEEMNKWVTALSNVCEQQASGGPSSRS 2277
F V YL A +++E +W++A+ + + +
Sbjct: 71 AFEVSTPERTFYLI-ADSEKEKEEWISAIGRAIVKLSRSKGTIDE 114
>gnl|CDD|241389 cd13235, PH2_FARP1-like, FERM, RhoGEF and pleckstrin
domain-containing protein 1 and related proteins
Pleckstrin Homology (PH) domain, repeat 2. Members here
include FARP1 (also called Chondrocyte-derived ezrin-like
protein; PH domain-containing family C member 2), FARP2
(also called FIR/FERM domain including RhoGEF;
FGD1-related Cdc42-GEF/FRG), and FARP6 (also called Zinc
finger FYVE domain-containing protein 24). They are
members of the Dbl family guanine nucleotide exchange
factors (GEFs) which are upstream positive regulators of
Rho GTPases. Little is known about FARP1 and FARP6,
though FARP1 has increased expression in differentiated
chondrocytes. FARP2 is thought to regulate neurite
remodeling by mediating the signaling pathways from
membrane proteins to Rac. It is found in brain, lung, and
testis, as well as embryonic hippocampal and cortical
neurons. FARP1 and FARP2 are composed of a N-terminal
FERM domain, a proline-rich (PR) domain, Dbl-homology
(DH), and two C-terminal PH domains. FARP6 is composed of
Dbl-homology (DH), and two C-terminal PH domains
separated by a FYVE domain. This hierarchy contains the
second PH repeat. PH domains have diverse functions, but
in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 113
Score = 35.0 bits (81), Expect = 0.089
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 28/126 (22%)
Query: 2147 RPTSGADADH-------MEGTLVRKHEWEAIAKRASNRSWDKIFVSLRGTLLYFYK---D 2196
R TS + DH M G L+RK + SN W K++V L+FYK D
Sbjct: 3 RNTSVSMNDHLAAVENQMSGYLLRKF-------KNSN-GWQKLWVVFTNFCLFFYKSHQD 54
Query: 2197 QKSAKSSPEIYYKNETPFELRGGSAQVADDYSKKKHVFRVKADNGAEYLFQAKNDEEMNK 2256
+ S P + Y P AD+ K +VF+++ + Y F+A+++ +
Sbjct: 55 EFPLASLPLLGYSVGLP--------SEADNI-DKDYVFKLQFKS-HVYFFRAESEYTFER 104
Query: 2257 WVTALS 2262
W+ +
Sbjct: 105 WMEVIR 110
>gnl|CDD|225488 COG2937, PlsB, Glycerol-3-phosphate O-acyltransferase [Lipid
metabolism].
Length = 810
Score = 37.8 bits (88), Expect = 0.091
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 12/112 (10%)
Query: 748 QFFADAVDVDIWMLDTVRLVSSED--VGRDEANVQSLLKKHKDVTEELKNYASTIEALRN 805
AD +D W L+ ED + + + LL + E L+ Y T + LR
Sbjct: 660 DELADVIDEVAWEFVRQDLLKPEDDELIINMLQSRRLLLLAAGLREFLQRYYITADLLRA 719
Query: 806 QASQLGDQDKESP--------EVLERLASIEFRYKELLE--LAKLRKQRLLD 847
+G + E VL + + EF K L + LR Q L+D
Sbjct: 720 APPDIGRAELEKESLGVAQRLSVLHGINAPEFFDKALFSTAIQTLRDQGLID 771
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 36.0 bits (83), Expect = 0.17
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 990 GIMTLQR--RLSGMERDLAAIQAKLDSLEAEAVAIEKEHPE---EAEAIRERIKQIRIIW 1044
G+ TLQR ++ D ++ KL+ L+ E + KE E E E ++ER+K++ +
Sbjct: 120 GLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179
Query: 1045 EQLTQMLKERDAKLEE 1060
+L +MLK+ ++ +
Sbjct: 180 SRLEEMLKKLPGEVYD 195
>gnl|CDD|241450 cd13296, PH2_MyoX, Myosin X Pleckstrin homology (PH) domain, repeat
2. MyoX, a MyTH-FERM myosin, is a molecular motor that
has crucial functions in the transport and/or tethering
of integrins in the actin-based extensions known as
filopodia, microtubule binding, and in netrin-mediated
axon guidance. It functions as a dimer. MyoX walks on
bundles of actin, rather than single filaments, unlike
the other unconventional myosins. MyoX is present in
organisms ranging from humans to choanoflagellates, but
not in Drosophila and Caenorhabditis elegans.MyoX
consists of a N-terminal motor/head region, a neck made
of 3 IQ motifs, and a tail consisting of a coiled-coil
domain, a PEST region, 3 PH domains, a myosin tail
homology 4 (MyTH4), and a FERM domain at its very
C-terminus. The first PH domain in the MyoX tail is a
split-PH domain, interupted by the second PH domain such
that PH 1a and PH 1b flanks PH 2. The third PH domain (PH
3) follows the PH 1b domain. This cd contains the second
PH repeat. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 111
Score = 33.9 bits (78), Expect = 0.19
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 12/91 (13%)
Query: 2175 SNRSWDKIFVSLRGTLLYFYK-DQKSAKSSPEIYYKNETPFELRGGSAQVADDYSKKKHV 2233
S ++W + LR T+L +Y+ DQ+ AK+ I ++R SA+ D + K++
Sbjct: 24 SRKNWKSRWFVLRDTVLKYYENDQEGAKALGTI--------DIR--SAKEIVDNTPKENG 73
Query: 2234 FRVKADNGAEYLFQAKNDEEMNKWVTALSNV 2264
F + + Y F A++ E+ ++W + L+ V
Sbjct: 74 FDITTPSRT-YHFVAESPEDASQWFSVLTRV 103
>gnl|CDD|183703 PRK12724, PRK12724, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 432
Score = 36.5 bits (84), Expect = 0.19
Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 19/177 (10%)
Query: 1425 QQMIETQMAVKAKQVSELETQAEILQKTVPDKMEEIVVKKSAVEQRFEKIKEPLLARQRA 1484
++MIE Q+ + KQ S E +++ + D ++E++ +KS E +K + L
Sbjct: 47 KKMIEIQIGIPEKQASR-----EKIERKLQD-LKELLKQKSYTEPERKKTLQTLKPLSER 100
Query: 1485 LEKKKEAYQFRRDIEDEKLWIAEKLPSAKSTEYGNSLFNVHMLKKKNQSLAKEIDNHEPR 1544
LE+K+ A E E++ + P S E LF + + ++ ++ + P
Sbjct: 101 LEEKESAIYEIESFELEEVITEPERPVGLSFE--KELFEKNSFLESETTIVRK-EKDSPL 157
Query: 1545 INLICNNGRKLIDEGHEDSAEFTSLIEDLMDRWQQLKKAVDERRSKLIQSEKAQQYL 1601
L G +L+ EG S +E++ + ++ VD+ R+ + +E+A YL
Sbjct: 158 QRL----GERLVREGMSQ-----SYVEEMASKLEERLSPVDQGRNHNV-TERAVTYL 204
>gnl|CDD|241309 cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosine and
3-Phosphoinositides Pleckstrin homology (PH) domain.
DAPP1 (also known as PHISH/3'
phosphoinositide-interacting SH2 domain-containing
protein or Bam32) plays a role in B-cell activation and
has potential roles in T-cell and mast cell function.
DAPP1 promotes B cell receptor (BCR) induced activation
of Rho GTPases Rac1 and Cdc42, which feed into
mitogen-activated protein kinases (MAPK) activation
pathways and affect cytoskeletal rearrangement. DAPP1can
also regulate BCR-induced activation of extracellular
signal-regulated kinase (ERK), and c-jun NH2-terminal
kinase (JNK). DAPP1 contains an N-terminal SH2 domain and
a C-terminal pleckstrin homology (PH) domain with a
single tyrosine phosphorylation site located centrally.
DAPP1 binds strongly to both PtdIns(3,4,5)P3 and
PtdIns(3,4)P2. The PH domain is essential for plasma
membrane recruitment of PI3K upon cell activation. PH
domains have diverse functions, but in general are
involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but all
have a common fold, which is electrostatically polarized.
Less than 10% of PH domains bind phosphoinositide
phosphates (PIPs) with high affinity and specificity. PH
domains are distinguished from other PIP-binding domains
by their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH domain
proteins to the plasma membrane. A few display strong
specificity in lipid binding. Any specificity is usually
determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 96
Score = 33.4 bits (77), Expect = 0.22
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 2177 RSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVADDYSKKKHVFRV 2236
++W + LR L ++K + K + +L S+ AD K + FR+
Sbjct: 17 KNWKTRWFVLRKNELKYFKTRTDTKPIRTL--------DLTECSSVQADYSQGKPNCFRL 68
Query: 2237 KADNGAEYLFQAKNDEEMNKWVTALS 2262
+ + AK +EE ++WV L
Sbjct: 69 VFPD-RTFYMYAKTEEEADEWVKLLK 93
>gnl|CDD|241529 cd13378, PH_RhoGAP2, Rho GTPase activating protein 2 Pleckstrin
homology (PH) domain. RhoGAP2 (also called RhoGap22 or
ArhGap22) are involved in cell polarity, cell morphology
and cytoskeletal organization. They activate a GTPase
belonging to the RAS superfamily of small GTP-binding
proteins. The encoded protein is insulin-responsive, is
dependent on the kinase Akt, and requires the
Akt-dependent 14-3-3 binding protein which binds
sequentially to two serine residues resulting in
regulation of cell motility. Members here contain an
N-terminal PH domain followed by a RhoGAP domain and
either a BAR or TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) domain. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 116
Score = 33.8 bits (77), Expect = 0.24
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 2172 KRASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVADDYSKKK 2231
+R+ ++W + + LRG L++YKD++ K I + EL + K
Sbjct: 12 QRSIMKNWQQRWFVLRGDQLFYYKDEEETKPQGCISLQGSQVNELPPNPEEPG------K 65
Query: 2232 HVFRVKADNGAE----------YLFQAKNDEEMNKWVTALSNVCEQQASGG 2272
H+F + + +L A + +M WV A+ V GG
Sbjct: 66 HLFEILPGGAGDREKVPMNHEAFLLMANSQSDMEDWVKAIRRVIWAPFGGG 116
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional.
Length = 482
Score = 36.1 bits (84), Expect = 0.26
Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 2044 MSMELGLTIDEVENLIKKHEAFEKSAIAQEERFSALERLTTFELKELNKRKEEEERKRQE 2103
++ L LT +E+E L +A +K + K+ EE K+++
Sbjct: 388 LAAFLELTEEEIEFLTGSKKATKK-----------------IKKIVEKAEKKREEEKKEK 430
Query: 2104 ELAAKQTPPTSPDQSAKDRLDGEEVKDKEKEGESRQEKQARGERPTSGADA 2154
+ A ++ + EE +++E+E E +E++ ++ +
Sbjct: 431 KKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQATLFD 481
>gnl|CDD|226931 COG4565, CitB, Response regulator of citrate/malate metabolism
[Transcription / Signal transduction mechanisms].
Length = 224
Score = 34.9 bits (81), Expect = 0.32
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 1142 FLRERLKALRDGWEELHKMWENRQQLLSQSLNLQMFNRDAKQAEVLLSQQEHVLSKDETP 1201
F ERL+ + + E+ QQL SQ Q+FN +K+ Q L K
Sbjct: 105 FTFERLQQALTRYRQKRHALESHQQL-SQKELDQLFNIQSKE------QPPDDLPKGLDE 157
Query: 1202 VNLEQVENLIKRHEAFLTTMEA 1223
+ L++V +K + LT E
Sbjct: 158 LTLQKVREALKEPDQELTAEEL 179
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 36.1 bits (83), Expect = 0.33
Identities = 97/749 (12%), Positives = 215/749 (28%), Gaps = 46/749 (6%)
Query: 1009 QAKLDSLEAEAVAIEKEHPEEAEA--IRERIKQIRIIWEQLTQMLKERDAKLEEAGDL-- 1064
+ +L+ E A + EK +E I E +I + L+E K + L
Sbjct: 154 ERRLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEY 213
Query: 1065 --------HRFLRDLDHFQVWLTKTQTDVASEDTPSSLADAEKLLNQHQAIREEIDNYTE 1116
L + L + + D+ E + E + + E + +
Sbjct: 214 YQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLK 273
Query: 1117 DYKKMMDYGEKVTAEPSTHDDPQYMFLRERLKALRDGWEELHKMWENRQQLLSQSLNLQM 1176
+ K+ + E E LK+ E E + + + L
Sbjct: 274 ENKEEEKEKKLQEEELKLLAK-----EEEELKSELLKLERRKVDDEEKLKESEKELKKLE 328
Query: 1177 FNRDAKQAEVLLSQQEHVLSKDETPVNLEQVENLIKRHEAFLTTMEANDDKINGVVQF-- 1234
++ E+ ++E + + E+ E L K E E K +
Sbjct: 329 KELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLS 388
Query: 1235 -ADRLNDEDHYAADKVKKKADNINDRRN----ANKERAHQQMETLKDQLQLHQFLQDCEE 1289
A +L +E+ ++ +K+A + + KE ++++ +++ + + Q
Sbjct: 389 SAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLT 448
Query: 1290 LGEWVQEKKFTAQDETYRSAKTVHSKWTRHQAFEAEIASNKDRLL-----RVQQSGSELM 1344
+ EK+ + K + + L Q+
Sbjct: 449 EEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKARE 508
Query: 1345 KEKPELAELIGPKISDLGQQFDDLET--TTKDKGERLFDSNREVLIHQTCDDIDSWMNEL 1402
LA + + + V + D++D
Sbjct: 509 GLAVLLALIKDGVGLRIISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEVDE---RQ 565
Query: 1403 EKQIENEDTGSDLASVNILMQKQQMIETQMAVKAKQVSELETQAEILQKTVPDKMEEIVV 1462
+ + + +L ++ +AV + L K + E+
Sbjct: 566 KLVRALTELPLPARTFVLLDPLLKLPLKSIAVL---EIDPALNLAQLNKATLEADEDDKR 622
Query: 1463 KKSAVEQRFEKIKEPLLARQRALEKKKEAYQFRRDIEDEKLWIAEKLPSAKSTEYGNSLF 1522
K + + LE K R + +AEK S
Sbjct: 623 AKVVEGILKDT------ELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKEL 676
Query: 1523 NVHMLKKKNQSLAKEIDNHEPRINLICNNGRKLIDEGHEDSAEFTSLIEDLMDRWQQLKK 1582
++ + R I +++ +E + + + Q K
Sbjct: 677 LAEQELQEKAESELAKNEILRRQEEIKKKEQRIKEEL-KKLKLEKEELLADKVQEAQDKI 735
Query: 1583 AVDERRSKLIQSEKAQQYLFDASEAESWMSEQELYMMVEDRGKDEISTQNLMKKHETLEL 1642
+ + + EK ++ + E E+ + E +E +K E E
Sbjct: 736 NEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEE 795
Query: 1643 AVEDYADTIRQLGETARQLTSEMHPESDQIALKQSQVDKLYAGLKDLAGERRAKLDEALK 1702
++ + +R L E E +Q+ ++Q + K + + + E L
Sbjct: 796 KLKAQEEELRALEEE--LKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLA 853
Query: 1703 LFMLNREVDDLEQWIAEREVVAGSHELGQ 1731
L R +++ + +E++ EL +
Sbjct: 854 EEELERLEEEITKEELLQELLLKEEELEE 882
>gnl|CDD|184349 PRK13824, PRK13824, replication initiation protein RepC; Provisional.
Length = 404
Score = 35.2 bits (82), Expect = 0.42
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 25/135 (18%)
Query: 1004 DLAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKERD-AKLEEAG 1062
DLA + A+ + EA A E+ A R+ ++++R E+LT L RD AKL EA
Sbjct: 140 DLAPLLARAEEFEALA--------EQVAAERKALRRLR---ERLT--LCRRDIAKLIEAA 186
Query: 1063 DLHRFLRDLDHFQVWLTKTQTDVASEDTPSSLADAEKLLNQHQAIREEIDNYTEDYKKMM 1122
D + + + + VA ++LA+ E +L++ +A+REE+ N E + K
Sbjct: 187 IEEGVPGDWEGVE---QRFRAIVARLPRRATLAELEPILDELEALREEVVNLLESHLK-- 241
Query: 1123 DYGEKVTAEPSTHDD 1137
+ S ++
Sbjct: 242 ------SENMSGNES 250
>gnl|CDD|183437 PRK12322, PRK12322, NADH dehydrogenase subunit D; Provisional.
Length = 366
Score = 34.7 bits (80), Expect = 0.50
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 61 WVNSHLVRVSCRIGDLYVDLRDGKMLLKLLEVLSGERLPRPTKGKMRIHCLEN------V 114
W ++L+ + LY R+ +M++ LL L G RL T MRI ++ +
Sbjct: 113 WWGTYLLDIGAVSPFLYA-FREREMIINLLNELCGARL---TFNYMRIGGVKWDAPDGWI 168
Query: 115 DKALQFLREQRVHLENMGSHDIVDGN 140
+K +F+ R L HD+V GN
Sbjct: 169 EKVKEFVPYMREQLAGY--HDLVTGN 192
>gnl|CDD|241435 cd13281, PH_PLEKHD1, Pleckstrin homology (PH) domain containing,
family D (with coiled-coil domains) member 1 PH domain.
Human PLEKHD1 (also called UPF0639, pleckstrin homology
domain containing, family D (with M protein repeats)
member 1) is a single transcript and contains a single PH
domain. PLEKHD1 is conserved in human, chimpanzee, , dog,
cow, mouse, chicken, zebrafish, and Caenorhabditis
elegans. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 139
Score = 33.5 bits (77), Expect = 0.51
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 18/112 (16%)
Query: 2157 MEGTLVRKHEWEAIAKRASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPE------IYYKN 2210
+ G L ++ + W K F L+ L +Y + S K E I+ K
Sbjct: 14 LSGVLWKRP------FGRQSAKWSKRFFVLKECFLLYYAE--SEKKDFEKTRRFNIHPKG 65
Query: 2211 ETPFELRGGSAQVADDYSKKKHVFRV-KADNGAEYLFQAKNDEEMNKWVTAL 2261
P GG + A + + F + D + A ++EE W+ L
Sbjct: 66 VIPL---GGCSIEAGRDPGRPYCFLISHPDFKGSIILAADSEEEQESWLDML 114
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and
chromosome partitioning].
Length = 420
Score = 34.7 bits (80), Expect = 0.54
Identities = 37/212 (17%), Positives = 82/212 (38%), Gaps = 22/212 (10%)
Query: 993 TLQRRLSGMERDLAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLK 1052
+Q+ ++ +E+ + Q + LE + ++E E ++ ++ + ++L + +
Sbjct: 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEI----ASLEAQLIETADDLKKLRKQIA 97
Query: 1053 ERDAKLEEAGDLHRFLRDLDHFQV-WLTKTQTDV--ASEDTPSSLADAEKLLNQHQAI-- 1107
+ +A+L R R Q+ L ++ + A +P + +L + A+
Sbjct: 98 DLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNP 157
Query: 1108 --REEIDNYTEDYKKMMDYGEKVTAEPSTHDDPQYMFLRERLKALRDGWEELHKMWENRQ 1165
E ID K++ ++ AE + R +L ++ E R+
Sbjct: 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLS--------EQRAQQAKLAQLLEERK 209
Query: 1166 QLLSQSLNLQMFNRDAKQAEVLLSQQEHVLSK 1197
+ L+Q LN ++ K E L E L
Sbjct: 210 KTLAQ-LNSELSADQKKLEE--LRANESRLKN 238
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members
of this protein family are homologs of ClpB, an ATPase
associated with chaperone-related functions. These ClpB
homologs, designated ClpV1, are a key component of the
bacterial pathogenicity-associated type VI secretion
system [Protein fate, Protein and peptide secretion and
trafficking, Cellular processes, Pathogenesis].
Length = 852
Score = 34.9 bits (81), Expect = 0.59
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 971 IEDKKRILQSTDSLEMDLTGIMTLQR-RLSGMERD--LAAIQAKLDSLEAEAVAIEKEHP 1027
+ED +R + + + LE+D L+R G + D LA ++A+L +LEAE A+E
Sbjct: 421 LEDLRRRIAALE-LELDA-----LEREAALGADHDERLAELRAELAALEAELAALEARWQ 474
Query: 1028 EEAEAIRERIKQIRIIWEQLTQM-LKERDAKLEEAGDLHRFLRDLDH 1073
+E E + E I +R E + A + +L L
Sbjct: 475 QEKELV-EAILALRAELEADADAPADDDAALRAQLAELEAALASAQG 520
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of
this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded and
aggregated proteins [Protein fate, Protein folding and
stabilization].
Length = 852
Score = 34.9 bits (81), Expect = 0.63
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 995 QRRLSGMERDLAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKER 1054
+ RL +E++LA ++ + LE + A EK + + I+E I+Q+R+ EQ ER
Sbjct: 433 KERLEDLEKELAELEEEYADLEEQWKA-EKAAIQGIQQIKEEIEQVRLELEQ-----AER 486
Query: 1055 DAKLEEAGDL 1064
+ L +A +L
Sbjct: 487 EGDLAKAAEL 496
>gnl|CDD|241442 cd13288, PH_Ses, Sesquipedalian family Pleckstrin homology (PH)
domain. The sesquipedalian family has 2 mammalian
members: Ses1 and Ses2, which are also callled 7 kDa
inositol polyphosphate phosphatase-interacting protein 1
and 2. They play a role in endocytic trafficking and are
required for receptor recycling from endosomes, both to
the trans-Golgi network and the plasma membrane. Members
of this family form homodimers and heterodimers.
Sesquipedalian interacts with inositol polyphosphate
5-phosphatase OCRL-1 (INPP5F) also known as Lowe
oculocerebrorenal syndrome protein, a phosphatase enzyme
that is involved in actin polymerization and is found in
the trans-Golgi network and INPP5B. Sesquipedalian
contains a single PH domain. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 120
Score = 32.6 bits (75), Expect = 0.65
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 2172 KRASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFE---LRGGSAQVADDYS 2228
K N S+ K + L+G LL FY ++K + P L G + ++++D
Sbjct: 17 KGERNTSYQKRWFVLKGNLL-FYFEKKGDR----------EPLGVIVLEGCTVELSED-- 63
Query: 2229 KKKHVFRVKAD--NGAEYLFQAKNDEEMNKWVTALSN 2263
++ + F ++ D Y+ A++ E+M W+ ALS
Sbjct: 64 EEPYAFAIRFDGPGSRSYVLAAESQEDMESWMKALSR 100
>gnl|CDD|241404 cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin repeat and PH
domains Pleckstrin homology (PH) domain. ACAP (also
called centaurin beta) functions both as a Rab35 effector
and as an Arf6-GTPase-activating protein (GAP) by which
it controls actin remodeling and membrane trafficking.
ACAP contain an NH2-terminal bin/amphiphysin/Rvs (BAR)
domain, a phospholipid-binding domain, a PH domain, a GAP
domain, and four ankyrin repeats. The AZAPs constitute a
family of Arf GAPs that are characterized by an
NH2-terminal pleckstrin homology (PH) domain and a
central Arf GAP domain followed by two or more ankyrin
repeats. On the basis of sequence and domain
organization, the AZAP family is further subdivided into
four subfamilies: 1) the ACAPs contain an NH2-terminal
bin/amphiphysin/Rvs (BAR) domain (a phospholipid-binding
domain that is thought to sense membrane curvature), a
single PH domain followed by the GAP domain, and four
ankyrin repeats; 2) the ASAPs also contain an
NH2-terminal BAR domain, the tandem PH domain/GAP domain,
three ankyrin repeats, two proline-rich regions, and a
COOH-terminal Src homology 3 domain; 3) the AGAPs contain
an NH2-terminal GTPase-like domain (GLD), a split PH
domain, and the GAP domain followed by four ankyrin
repeats; and 4) the ARAPs contain both an Arf GAP domain
and a Rho GAP domain, as well as an NH2-terminal
sterile-a motif (SAM), a proline-rich region, a
GTPase-binding domain, and five PH domains. PMID 18003747
and 19055940 Centaurin can bind to phosphatidlyinositol
(3,4,5)P3. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 98
Score = 31.8 bits (73), Expect = 0.73
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 19/99 (19%)
Query: 2172 KRASN--RSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPF----ELRGGSAQVAD 2225
KR+SN ++W + + S++ L + K K +TP +LR + + +
Sbjct: 7 KRSSNAFKTWKRRWFSIQNGQLVYQKRFK-----------KDTPTVVVEDLRLCTVKPCE 55
Query: 2226 DYSKKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNV 2264
D ++ F V Y+ QA+++E+ W+ A+
Sbjct: 56 DIDRR-FCFEV-VSPTKSYMLQAESEEDRQAWIQAIQAA 92
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 34.5 bits (79), Expect = 0.74
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 1355 GPKISDLGQQFDDLETTTKDK---GERLFDSNREVLIHQTCDDIDSWMNELEKQIENEDT 1411
+D Q+ DD + K++ E++ D EV D++DS + E Q +
Sbjct: 10 NINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEV----VTDNVDSPVKEQSSQENLKI- 64
Query: 1412 GSDLASVNILMQKQQMIETQMAVKAKQVSELETQAEILQKTVPD-KMEEIVVKK 1464
+D + + +Q++E +K K+ + E Q EILQKT+P + +E ++KK
Sbjct: 65 -ADEVKKSTKEESKQLLEV---LKTKEEHQKEIQYEILQKTIPSFEPKESILKK 114
>gnl|CDD|241405 cd13251, PH_ASAP, ArfGAP with SH3 domain, ankyrin repeat and PH
domain Pleckstrin homology (PH) domain. ASAPs (ASAP1,
ASAP2, and ASAP3) function as an Arf-specific GAPs,
participates in rhodopsin trafficking, is associated with
tumor cell metastasis, modulates phagocytosis, promotes
cell proliferation, facilitates vesicle budding, Golgi
exocytosis, and regulates vesicle coat assembly via a
Bin/Amphiphysin/Rvs domain. ASAPs contain an NH2-terminal
BAR domain, a tandem PH domain/GAP domain, three ankyrin
repeats, two proline-rich regions, and a COOH-terminal
Src homology 3 (SH3) domain. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 108
Score = 31.9 bits (73), Expect = 0.81
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 2177 RSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVADDYSKKKHVFRV 2236
+ W K S+R L S E N+ P +L + QV + + K F +
Sbjct: 26 KVWQKRRCSIRNGFLTIS-------HSDE----NKPPVKLNLLTCQVKPN-PEDKKCFDL 73
Query: 2237 KADNGAEYLFQAKNDEEMNKWVTALSNVCEQQ 2268
+ N Y FQA++++E W++ L N E+
Sbjct: 74 ISHNRT-YHFQAEDEQEAEAWISVLQNSKEEA 104
>gnl|CDD|216778 pfam01906, YbjQ_1, Putative heavy-metal-binding. From comparative
structural analysis, this family is likely to be a
heavy-metal binding domain. The domain oligomerises as a
pentamer. The domain is about 100 amino acids long and
is found in prokaryotes.
Length = 64
Score = 30.9 bits (71), Expect = 0.82
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 281 ETVQGKRIGKVVGIAMDNDRMIHEYESLTSD 311
ET+ GK I + +GI +RM E L ++
Sbjct: 6 ETIPGKEITEYLGIVFGLERMKEEARELGAN 36
>gnl|CDD|241296 cd01265, PH_TBC1D2A, TBC1 domain family member 2A pleckstrin homology
(PH) domain. TBC1D2A (also called PARIS-1/Prostate
antigen recognized and identified by SEREX 1 and ARMUS)
contains a PH domain and a TBC-type GTPase catalytic
domain. TBC1D2A integrates signaling between Arf6, Rac1,
and Rab7 during junction disassembly. Activated Rac1
recruits TBC1D2A to locally inactivate Rab7 via its
C-terminal TBC/RabGAP domain and facilitate E-cadherin
degradation in lysosomes. The TBC1D2A PH domain mediates
localization at cell-cell contacts and coprecipitates
with cadherin complexes. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 101
Score = 31.9 bits (73), Expect = 0.85
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 2207 YYKNETPFELRG----GSAQVADDYSKKKHVFRVKADNGAEYLFQAKNDEEMNKWVTAL 2261
YY++ G A + D +K F + G Y+ +A + + M W+ L
Sbjct: 34 YYRSPQDITPLGSIDLSGAAFSYDPEAEKGTFEIHT-PGRVYILKASDRQAMLYWLQEL 91
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 34.2 bits (78), Expect = 0.91
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 1/115 (0%)
Query: 2063 EAFEKSAIAQEERFSALERLTTFELKELNKRKEEEERKRQEELAAKQTPPTSPDQSAKDR 2122
A E+ A+ + A + K+K EE K EE AK + ++ +
Sbjct: 141 AAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEA 200
Query: 2123 LDGEEVKDKEKEGESRQEKQARGERPTSGADADHMEGTLVRKHEWEAIAKRASNR 2177
E E E +++ EK+A A A+ + K + A A +A+ R
Sbjct: 201 KAAAEKAKAEAEAKAKAEKKAEAA-AEEKAAAEKKKAAAKAKADKAAAAAKAAER 254
>gnl|CDD|241420 cd13266, PH_Skap_family, Src kinase-associated phosphoprotein family
Pleckstrin homology (PH) domain. Skap adaptor proteins
couple receptors to cytoskeletal rearrangements. Src
kinase-associated phosphoprotein of 55 kDa (Skap55)/Src
kinase-associated phosphoprotein 1 (Skap1), Skap2, and
Skap-homology (Skap-hom) have an N-terminal coiled-coil
conformation, a central PH domain and a C-terminal SH3
domain. Their PH domains bind 3'-phosphoinositides as
well as directly affecting targets such as in Skap55
where it directly affecting integrin regulation by ADAP
and NF-kappaB activation or in Skap-hom where the
dimerization and PH domains comprise a
3'-phosphoinositide-gated molecular switch that controls
ruffle formation. PH domains are only found in
eukaryotes. They share little sequence conservation, but
all have a common fold, which is electrostatically
polarized. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 106
Score = 31.7 bits (72), Expect = 0.99
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 2179 WDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVADDY---SKKKHVFR 2235
W K + L T Y+Y +K + K E F + G A++ SKK F
Sbjct: 21 WQKRWCVLSNTAFYYYGSEKDKQQ------KGE--FAIDGYRARMNPTLRKDSKKDCCFE 72
Query: 2236 VKADNGAEYLFQAKNDEEMNKWVTALSNV 2264
+ A + Y F A + +E +WV + +
Sbjct: 73 ISAPDKRVYQFTAASPKEAREWVDQIKFL 101
>gnl|CDD|241536 cd13385, PH_Gab3, Grb2-associated binding protein 3 pleckstrin
homology (PH) domain. The Gab subfamily includes several
Gab proteins, Drosophila DOS and C. elegans SOC-1. They
are scaffolding adaptor proteins, which possess
N-terminal PH domains and a C-terminus with proline-rich
regions and multiple phosphorylation sites. Following
activation of growth factor receptors, Gab proteins are
tyrosine phosphorylated and activate PI3K, which
generates 3-phosphoinositide lipids. By binding to these
lipids via the PH domain, Gab proteins remain in
proximity to the receptor, leading to further signaling.
While not all Gab proteins depend on the PH domain for
recruitment, it is required for Gab activity. The members
in this cd include the Gab1, Gab2, and Gab3 proteins. PH
domains have diverse functions, but in general are
involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but all
have a common fold, which is electrostatically polarized.
Less than 10% of PH domains bind phosphoinositide
phosphates (PIPs) with high affinity and specificity. PH
domains are distinguished from other PIP-binding domains
by their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH domain
proteins to the plasma membrane. A few display strong
specificity in lipid binding. Any specificity is usually
determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 125
Score = 32.2 bits (73), Expect = 1.1
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 2229 KKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNVC 2265
+ VF VK YL AK +EEM WV +S +C
Sbjct: 81 QNNFVFIVKTTTRTFYLV-AKTEEEMQDWVQNISQIC 116
>gnl|CDD|241535 cd13384, PH_Gab2_2, Grb2-associated binding protein family pleckstrin
homology (PH) domain. The Gab subfamily includes several
Gab proteins, Drosophila DOS and C. elegans SOC-1. They
are scaffolding adaptor proteins, which possess
N-terminal PH domains and a C-terminus with proline-rich
regions and multiple phosphorylation sites. Following
activation of growth factor receptors, Gab proteins are
tyrosine phosphorylated and activate PI3K, which
generates 3-phosphoinositide lipids. By binding to these
lipids via the PH domain, Gab proteins remain in
proximity to the receptor, leading to further signaling.
While not all Gab proteins depend on the PH domain for
recruitment, it is required for Gab activity. Members
here include insect, nematodes, and crustacean Gab2s. PH
domains have diverse functions, but in general are
involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but all
have a common fold, which is electrostatically polarized.
Less than 10% of PH domains bind phosphoinositide
phosphates (PIPs) with high affinity and specificity. PH
domains are distinguished from other PIP-binding domains
by their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH domain
proteins to the plasma membrane. A few display strong
specificity in lipid binding. Any specificity is usually
determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 115
Score = 32.0 bits (73), Expect = 1.1
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 2207 YYKNETPFELRGG---------SAQVADDYSKKK---HVFRVKADNGAEYLFQAKNDEEM 2254
YY + T +L+G A + + K H+F ++ Y A ++EM
Sbjct: 43 YYTDRTCRKLKGSIDLDQCEQVDAGLTFETKNKLKDQHIFDIRT-PKRTYYLVADTEDEM 101
Query: 2255 NKWVTALSNVC 2265
NKWV + VC
Sbjct: 102 NKWVNCICTVC 112
>gnl|CDD|232822 TIGR00094, tRNA_TruD_broad, tRNA pseudouridine synthase, TruD family.
an EGAD loading error caused one member to be called
surE, but that's an adjacent gene. MJ11364 is a strong
partial match from 50 to 230 aa [Protein synthesis, tRNA
and rRNA base modification].
Length = 387
Score = 33.6 bits (77), Expect = 1.1
Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 12/183 (6%)
Query: 1363 QQFDDLETTTKDKGERLFDSNREVLIHQTCDDIDSWMNELEKQIENEDTGSDLASVNILM 1422
Q+F T G L SN + HQ + K+ SD S M
Sbjct: 165 QRFGTFRIITHTVGRELLLSNWKGANHQYALKPLQGETKKSKEARRIFWESDAKSALFNM 224
Query: 1423 QKQQMIETQMAVKAKQVSELETQAEILQKTVPDKMEEIVVKKS-----AVEQRFEKIKEP 1477
K + E + + A I+ + + +S E+ P
Sbjct: 225 PKAKRYERALLNSLLEGDNSY-LAAIMSLPKNLRTMFVHAYQSYLFNIKSERIELMGTAP 283
Query: 1478 LLARQRALEKKKEAYQFRR-----DIEDEKLWIAEKLPSAKSTEYGNSLFNVHMLKKKNQ 1532
L E ++EA +F + + + + S E +L V LK +
Sbjct: 284 LPGDGLIDELEREALRFEKKEVAPEGALDVKYKKALYARILSVEDFKALR-VPKLKSHAK 342
Query: 1533 SLA 1535
+L
Sbjct: 343 TLG 345
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 33.8 bits (78), Expect = 1.2
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 30/125 (24%)
Query: 2088 KELNKRKEEEERKRQEELAAKQTPPTSPDQSAKDRLDGEEVKDKEKEGESR----QEKQA 2143
K L ++ EEE+ +EE A + +S K +E D + +R + +A
Sbjct: 15 KRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANRLKKVEALRA 74
Query: 2144 RGERP------------------TSGADADHMEGTLVRKHEWEAIAKR-ASNRSWDKI-F 2183
+G P S + + +E V ++A R + R++ K+ F
Sbjct: 75 KGVEPYPYKFDVTHTAPELQEKYGSLENGEELEDVSV------SVAGRIMAKRAFGKLAF 128
Query: 2184 VSLRG 2188
LR
Sbjct: 129 YDLRD 133
>gnl|CDD|219099 pfam06595, BDV_P24, Borna disease virus P24 protein. This family
consists of several Borna disease virus (BDV) P24
proteins. The function of this family is unknown.
Length = 201
Score = 33.1 bits (75), Expect = 1.2
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 1556 IDEGHEDSAEFTSLIEDLMDRWQQLKKAVDERRSKLIQSEKAQQYLFDASEAESWMSEQE 1615
+D+ D + S+I D R + + + DE KL+ +E A+ + +A E + +
Sbjct: 43 VDQLLGDLRKNPSMISDPDQRTGREQLSNDELIKKLV-TELAENSMIEAEEVRGTLGDIS 101
Query: 1616 LYMMVEDRGKDEISTQNLMKKHETLELAVE-DYADTIRQLGETARQLTSEMHPESDQIAL 1674
+ + G + +S + ET++ A D++D+IR LGE + L M + + L
Sbjct: 102 ARI---EAGFESLSALQV----ETIQTAQRCDHSDSIRILGENIKILDRSMKTMMETMKL 154
Query: 1675 KQSQVDKLYA 1684
+VD LYA
Sbjct: 155 MMEKVDLLYA 164
>gnl|CDD|234659 PRK00137, rplI, 50S ribosomal protein L9; Reviewed.
Length = 147
Score = 32.0 bits (74), Expect = 1.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 2087 LKELNKRKEEEERKRQEELAAKQTPPTSPDQSAKDRLDGEEVKDKEKEGES 2137
LK+L R+ E E K EELA ++ ++L+G V K K GE
Sbjct: 44 LKQLEARRAELEAKAAEELAE--------AEALAEKLEGLTVTIKAKAGED 86
>gnl|CDD|241465 cd13311, PH_Slm1, Slm1 Pleckstrin homology (PH) domain. Slm1 is a
component of the target of rapamycin complex 2 (TORC2)
signaling pathway. It plays a role in the regulation of
actin organization and is a target of sphingolipid
signaling during the heat shock response. Slm1 contains a
single PH domain that binds PtdIns(4,5)P2, PtdIns(4)P,
and dihydrosphingosine 1-phosphate (DHS-1P). Slm1
possesses two binding sites for anionic lipids. The
non-canonical binding site of the PH domain of Slm1 is
used for ligand binding, and it is proposed that
beta-spectrin, Tiam1 and ArhGAP9 also have this type of
phosphoinositide binding site. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 110
Score = 31.2 bits (71), Expect = 1.5
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 2225 DDYSKKKHVFRVKA-DNGA-------EYLFQAKNDEEMNKWVTALSNVCE 2266
D K H F +K D G+ E++F+A++ EEM W + + +
Sbjct: 61 SDEGGKSHKFILKGKDVGSGKFHRGHEWVFKAESHEEMMAWWEDIKTLTK 110
>gnl|CDD|241463 cd13309, PH_SKIP, SifA and kinesin-interacting protein Pleckstrin
homology (PH) domain. SKIP (also called
PLEKHM2/Pleckstrin homology domain-containing family M
member 2) is a soluble cytosolic protein that contains a
RUN domain and a PH domain separated by a unstructured
linker region. SKIP is a target of the Salmonella
effector protein SifA and the SifA-SKIP complex regulates
kinesin-1 on the bacterial vacuole. The PH domain of SKIP
binds to the N-terminal region of SifA while the
N-terminus of SKIP is proposed to bind the TPR domain of
the kinesin light chain. The opposite side of the SKIP PH
domain is proposed to bind phosphoinositides. TSifA,
SKIP, SseJ, and RhoA family GTPases are also thought to
promote host membrane tubulation. Recently, it was shown
that the lysosomal GTPase Arl8 binds to the kinesin-1
linker SKIP and that both are required for the normal
intracellular distribution of lysosomes. Interestingly,
two kinesin light chain binding motifs (WD) in SKIP have
now been identified to match a consensus sequence for a
kinesin light chain binding site found in several
proteins including calsyntenin-1/alcadein, caytaxin, and
vaccinia virus A36. SKIP has also been shown to interact
with Rab1A. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 103
Score = 31.2 bits (71), Expect = 1.5
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 2179 WDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVADDYSKKKHVFRVKA 2238
W + L+ +LY Y D+ I E GG ++ + + + H F +
Sbjct: 20 WKPGYFLLKNGVLYQYPDRSDRLPLLSISLGGE----QCGGCRRINN--TDRPHSFELIL 73
Query: 2239 DNGAEYLFQAKNDEEMNKWVTALSNVCEQQASGG 2272
+ A ++ E ++W+ +L Q AS G
Sbjct: 74 TDRPSLELAAPDEYEASEWLQSLC----QSASKG 103
>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional.
Length = 496
Score = 33.3 bits (76), Expect = 1.7
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 2212 TPFELRGGSAQVADDY--SKKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNV 2264
TPF V Y S HVF V G LFQA++D E + W+ + +V
Sbjct: 434 TPFSDLEDVFPVPSKYTGSNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSV 488
>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD
proteins consist of three coiled-coiled domains and are
involved in dynein-mediated minus end-directed transport
from the Golgi apparatus to the endoplasmic reticulum
(ER). For full functioning they bind with GSK-3beta
pfam05350 to maintain the anchoring of microtubules to
the centromere. It appears that amino-acid residues
437-617 of BicD and the kinase activity of GSK-3 are
necessary for the formation of a complex between BicD and
GSK-3beta in intact cells.
Length = 711
Score = 33.7 bits (77), Expect = 1.7
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 980 STDSLEMDLTGIMTLQRRLSGMERDLAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQ 1039
D E+D+ G L+ + ++ ++A+L +L+A +++ + +E + +R I+
Sbjct: 337 DGDYYEVDINGPEILECKYRVAVSEVGELKAELKALKARYNELQERYEDEKDRLRNEIQN 396
Query: 1040 IRIIWEQLTQMLKERDAKLEEAGDLHRFLRDLDH 1073
+ E+L + K E +GDL + LR L H
Sbjct: 397 LA---EKLLSLEKSSHEDQERSGDLEKELRKLTH 427
>gnl|CDD|241530 cd13379, PH_RhoGap24, Rho GTPase activating protein 24 Pleckstrin
homology (PH) domain. RhoGap24 (also called ARHGAP24,
p73RhoGAp, and Filamin-A-associated RhoGAP) like other
RhoGAPs are involved in cell polarity, cell morphology
and cytoskeletal organization. They act as GTPase
activators for the Rac-type GTPases by converting them to
an inactive GDP-bound state and control actin remodeling
by inactivating Rac downstream of Rho leading to suppress
leading edge protrusion and promotes cell retraction to
achieve cellular polarity and are able to suppress RAC1
and CDC42 activity in vitro. Overexpression of these
proteins induces cell rounding with partial or complete
disruption of actin stress fibers and formation of
membrane ruffles, lamellipodia, and filopodia. Members
here contain an N-terminal PH domain followed by a RhoGAP
domain and either a BAR or TATA Binding Protein (TBP)
Associated Factor 4 (TAF4) domain. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common fold,
which is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 114
Score = 31.5 bits (71), Expect = 1.7
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 14/104 (13%)
Query: 2177 RSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVADDYSKKKHVFRV 2236
++W + L+G LY++KD+ K I+ E ++ K +F V
Sbjct: 17 KTWHTRWFVLKGDQLYYFKDEDETKPLGTIFLPGNRVTE------HPCNEEEPGKFLFEV 70
Query: 2237 --------KADNGAEYLFQAKNDEEMNKWVTALSNVCEQQASGG 2272
N YL A +M WV ++ V GG
Sbjct: 71 VPGGDRERMTANHETYLLMASTQNDMEDWVKSIRRVIWAPFGGG 114
>gnl|CDD|241425 cd13271, PH2_TAPP1_2, Tandem PH-domain-containing proteins 1 and 2
Pleckstrin homology (PH) domain, C-terminal repeat. The
binding of TAPP1 (also called PLEKHA1/pleckstrin homology
domain containing, family A (phosphoinositide binding
specific) member 1) and TAPP2 (also called PLEKHA2)
adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3,
function as negative regulators of insulin and PI3K
signalling pathways (i.e. TAPP/utrophin/syntrophin
complex). TAPP1 and TAPP2 contain two sequential PH
domains in which the C-terminal PH domain specifically
binds PtdIns(3,4)P2 with high affinity. The N-terminal PH
domain does not interact with any phosphoinositide
tested. They also contain a C-terminal PDZ-binding motif
that interacts with several PDZ-binding proteins,
including PTPN13 (known previously as PTPL1 or FAP-1) as
well as the scaffolding proteins MUPP1 (multiple
PDZ-domain-containing protein 1), syntrophin and
utrophin. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 114
Score = 31.2 bits (71), Expect = 1.7
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 2225 DDYSKKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNVCEQQASGGPSS 2275
D + ++F + + Y+ QA + E+M+ W+ A+S + SS
Sbjct: 65 GDLLMRDNLFEIITTSRTFYI-QADSPEDMHSWIKAISGAIVARRGPYRSS 114
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 33.3 bits (77), Expect = 2.1
Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 1412 GSDLASVNILMQKQQMIETQMAVKAKQVSELETQAEILQKTVPDKMEEIVVKKSAVEQRF 1471
G D +N L+ + +E ++ KA++ L +AE L++ + +K E++ ++
Sbjct: 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL-------QEEE 564
Query: 1472 EKIKEPLL--ARQRALEKKKEAYQFRRDIED----EKLWIAEKLPSAKSTEYGNSLFNVH 1525
+K+ E A+Q E KKEA + +++ + +
Sbjct: 565 DKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKE 624
Query: 1526 MLKKKNQSLAKEI 1538
KKK + +E+
Sbjct: 625 KKKKKQKEKQEEL 637
Score = 32.1 bits (74), Expect = 3.9
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 2053 DEVENLIKKHEAFEKSAIAQEERFSALERLTTFELKELNKRKEE-EERKRQEELAAKQ 2109
+++ LI E E+ + E AL + +EL ++KE+ +E + + A++
Sbjct: 516 EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK 573
>gnl|CDD|241470 cd13316, PH_Boi, Boi family Pleckstrin homology domain. Yeast Boi
proteins Boi1 and Boi2 are functionally redundant and
important for cell growth with Boi mutants displaying
defects in bud formation and in the maintenance of cell
polarity.They appear to be linked to Rho-type GTPase,
Cdc42 and Rho3. Boi1 and Boi2 display two-hybrid
interactions with the GTP-bound ("active") form of Cdc42,
while Rho3 can suppress of the lethality caused by
deletion of Boi1 and Boi2. These findings suggest that
Boi1 and Boi2 are targets of Cdc42 that promote cell
growth in a manner that is regulated by Rho3. Boi
proteins contain a N-terminal SH3 domain, followed by a
SAM (sterile alpha motif) domain, a proline-rich region,
which mediates binding to the second SH3 domain of Bem1,
and C-terminal PH domain. The PH domain is essential for
its function in cell growth and is important for
localization to the bud, while the SH3 domain is needed
for localization to the neck. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 95
Score = 30.4 bits (69), Expect = 2.2
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 2172 KRASNR-SWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNETPFELRGGSAQVADDYSKK 2230
KR +W + L+GT LY+ K + +K I +L G V D SK
Sbjct: 7 KRGERYGTWKTRYFVLKGTRLYYLKSENDSKEKGLI--------DLTGHRVTVDDSNSKP 58
Query: 2231 -KHVFR-VKADNGAEYLFQAKNDEEMNKWVTAL 2261
++ F+ V + F E + +W+ AL
Sbjct: 59 GRYGFKLVPPAVEKVHYFAVDEKEVLREWMKAL 91
>gnl|CDD|234877 PRK00964, PRK00964, tetrahydromethanopterin S-methyltransferase
subunit A; Provisional.
Length = 225
Score = 32.3 bits (74), Expect = 2.3
Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 18/114 (15%)
Query: 971 IEDKKRILQSTDSL----EMDLTGIMTLQRRLS-----GMERDLAAIQAKLDSL------ 1015
++D RI+ + ++ + + Q ++ E D AI AK+
Sbjct: 99 VDDDGRIIGAKGAIPFLENVPDEAVERFQEQIEIVDLIDTE-DPGAITAKIKECIAKDPG 157
Query: 1016 --EAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKERDAKLEEAGDLHRF 1067
+ E + +E E E E + E + ++ + K+E G L+++
Sbjct: 158 AFDEEPMVVELEEIGGEEEEEEGGPKADPAEEAVEARIRAIERKIEGIGRLNKY 211
>gnl|CDD|241290 cd01259, PH_APBB1IP, Amyloid beta (A4) Precursor protein-Binding,
family B, member 1 Interacting Protein pleckstrin
homology (PH) domain. APBB1IP consists of a
Ras-associated (RA) domain, a PH domain, a
family-specific BPS region, and a C-terminal SH2 domain.
Grb7, Grb10 and Grb14 are paralogs that are also present
in this hierarchy. These adapter proteins bind a variety
of receptor tyrosine kinases, including the insulin and
insulin-like growth factor-1 (IGF1) receptors. Grb10 and
Grb14 are important tissue-specific negative regulators
of insulin and IGF1 signaling based and may contribute to
type 2 (non-insulin-dependent) diabetes in humans. RA-PH
function as a single structural unit and is dimerized via
a helical extension of the PH domain. The PH domain here
are proposed to bind phosphoinositides non-cannonically
ahd are unlikely to bind an activated GTPase. The tandem
RA-PH domains are present in a second adapter-protein
family, MRL proteins, Caenorhabditis elegans protein
MIG-1012, the mammalian proteins RIAM and lamellipodin
and the Drosophila melanogaster protein Pico12, all of
which are Ena/VASP-binding proteins involved in
actin-cytoskeleton rearrangement. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 124
Score = 31.1 bits (71), Expect = 2.3
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 38/112 (33%)
Query: 2172 KRASNRSWDKIFVSLRGTLLYFYKDQKSAKS----------SPEIYY------KNETPFE 2215
K +SW K + LR + LY+ KS +S +Y K + P +
Sbjct: 15 KEDGKKSWKKRYFVLRASGLYYSPKGKSKESRDLQCLAQFDDYNVYTGLNGKKKYKAPTD 74
Query: 2216 LRGGSAQVADDYSKKKHVFRVK----ADNGAEYL--FQAKNDEEMNKWVTAL 2261
F +K + G++ + A++++ W+TA+
Sbjct: 75 ----------------FGFCLKPNKVQEKGSKDIKYLCAEDEQSRTCWLTAI 110
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This family
of bacterial proteins has no known function. The proteins
are in the region of 500-600 amino acid residues in
length.
Length = 450
Score = 33.0 bits (76), Expect = 2.3
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 961 HIECRETVSWIEDKKRILQSTDSLEMDLTGIMTLQRRLSGMERDLAAIQAKLDSLEAEAV 1020
++ +E S K I D E+ + L+ L +E +L I+ L L +A
Sbjct: 307 EVKAKELGSPAGTKTEIEVGVDFPELK-EELKELEEELKELEEELEKIKKLLKKLPKKA- 364
Query: 1021 AIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKERDAKLEE 1060
+ P E E++ + + + + L+E +L+E
Sbjct: 365 --RGQLPPEKREQLEKLLETKEKLSEELEELEEELKELKE 402
>gnl|CDD|217206 pfam02731, SKIP_SNW, SKIP/SNW domain. This domain is found in
chromatin proteins.
Length = 158
Score = 31.5 bits (72), Expect = 2.4
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 392 KAWERLE-KAEHERELALREELIRQEKLEQLAAR 424
KA E + +AE +R+LA +E+ ++EKL +LA R
Sbjct: 120 KAREEVRQRAELQRQLAEKEKQEKEEKLRELAQR 153
>gnl|CDD|137204 PRK09310, aroDE, bifunctional 3-dehydroquinate dehydratase/shikimate
dehydrogenase protein; Reviewed.
Length = 477
Score = 32.8 bits (75), Expect = 2.4
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 944 AEGKRDELNSAHGVQTFH--IECRETVSWIEDKKRILQSTDSLEMDLTGIMTLQRRLSGM 1001
E K+ L S V ++ ++S +E KK I + I+T ++ S
Sbjct: 12 LEAKQQILRSLKLVDCIELRVDLLLSLSDLELKKLIELAPIP-------ILTWKKHESCS 64
Query: 1002 ERDLAAIQAKLDSLEAEAVAIEKEHPEEA-EAIRERIKQIRII 1043
+ L L + I+K+ P+EA IR+ +I+II
Sbjct: 65 QAAWIDKMQSLAKLNPNYLDIDKDFPKEALIRIRKLHPKIKII 107
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 32.9 bits (75), Expect = 2.5
Identities = 45/251 (17%), Positives = 86/251 (34%), Gaps = 27/251 (10%)
Query: 2042 YLMSMELG-LTIDEVENLIKKHEAFE------KSAIAQEERFSALERLTTFELKELNKR- 2093
YL+SM +G LT+++V+ L + K + L+ L EL +L+K
Sbjct: 1114 YLLSMAIGTLTLEKVQELCADRDKLNIEVEDLKKTTPKSLWLKDLDALEK-ELDKLDKED 1172
Query: 2094 -KEEEERKRQEELAAKQTPPTSPDQSAKDRLDGEEVKDKEKEGESRQEKQARGERPTSGA 2152
K EE R++ + AA+ + S + K +K ES ++ G
Sbjct: 1173 AKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETE 1232
Query: 2153 DADHMEGTLVRKHEWEAIAKRASNRSWDKIFVSLRGTLLYFYKDQKSAKSSPEIYYKNET 2212
+ + R + A + + + L+ L + D S+P K E
Sbjct: 1233 NVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLD-----SAPAQSAKMEE 1287
Query: 2213 PFELRGGSAQVADDYSKKKHVFRVKADNGAEYLFQAKNDEEMNKWVTALSNVCEQQASGG 2272
+ V + + A + +D++ + + +S + GG
Sbjct: 1288 TVK------AVPARRAAARKKPL------ASVSVISDSDDDDDDFAVEVSLAERLKKKGG 1335
Query: 2273 PSSRSQTLPAA 2283
+ AA
Sbjct: 1336 RKPAAANKKAA 1346
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding protein
(GBP) is induced by interferon-gamma during macrophage
induction. This family contains GBP1 and GPB2, both
GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 32.3 bits (74), Expect = 2.8
Identities = 15/70 (21%), Positives = 35/70 (50%)
Query: 991 IMTLQRRLSGMERDLAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLTQM 1050
I+ + L+ E+ + A +AK ++ EAE + ++ EE + + + + + +QL +
Sbjct: 192 ILQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEK 251
Query: 1051 LKERDAKLEE 1060
++ KL
Sbjct: 252 MEAEREKLLA 261
>gnl|CDD|151921 pfam11483, DUF3209, Protein of unknown function (DUF3209). This
family of proteins has no known function.
Length = 122
Score = 30.9 bits (70), Expect = 3.0
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 971 IEDKKRILQSTDSLEMDLTGIMTLQRRLSGMERDLAAIQAKLDS----LEAEAVAIEKEH 1026
+D + + LE L + L+ + LAA++ LD+ LE E A E E
Sbjct: 18 TKDDHARQHAREELEGVLEPPI---EALAEAK-TLAALERHLDAALVDLEEEIAATEPED 73
Query: 1027 PEEAEAIRERIKQIRIIWEQLTQMLKERDAKLEEAGDLHRFLRDL 1071
PE + +R R+ +R L ++ +A L++ G+ H L +
Sbjct: 74 PE-YDYLRGRLVAVRDAEGALKRLRMHGEAVLDDLGETHHRLHEA 117
>gnl|CDD|241434 cd13280, PH_SIP3, Snf1p-interacting protein 3 Pleckstrin homology
(PH) domain. SIP3 interacts with SNF1 protein kinase and
activates transcription when anchored to DNA. It may
function in the SNF1 pathway. SIP3 contain an N-terminal
Bin/Amphiphysin/Rvs (BAR) domain followed by a PH domain.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 105
Score = 30.3 bits (69), Expect = 3.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 2234 FRVKADNGAEYLFQAKNDEEMNKWVTALSNV 2264
F VK + QA+ +E+ W+T N
Sbjct: 69 FEVKIFKDISIILQAETLKELKSWLTVFENA 99
>gnl|CDD|241422 cd13268, PH_Brdg1, BCR downstream signaling 1 Pleckstrin homology
(PH) domain. Brdg1 is thought to function as a docking
protein acting downstream of Tec, a protein tyrosine
kinases (PTK), in B-cell antigen receptor (BCR)
signaling. BRDG1 contains a proline-rich (PR) motif which
is thought to bind SH3 or WW domains, a PH domain, and
multiple tyrosine residues which are potential target
sites for SH2 domains. Since PH domains bind
phospholipids it is thought to be involved in the
tethering of Tec and BRDG1 to the cell membrane.Tec and
Pyk2, but not Btk, Bmx, Lyn, Syk, or c-Abl, induces
phosphorylation of BRDG1 on tyrosine residues. Efficient
phosphorylation requires both the PH and SH2 domains of
BRDG1 and the kinase domain of Tec. The overexpression of
BRDG1 increases theBCR-mediated activation of
cAMP-response element binding protein (CREB).
Phosphorylated BRDG1 is hypothesized to recruit CREB
either directly or through its recruitment of downstream
effectors which then recruit CREB. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common fold,
which is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 127
Score = 30.5 bits (69), Expect = 3.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 2172 KRASNRSWDKIFVSLRGTLLYFYKDQKS 2199
+R+ +R + K++ LRGT L+FY D+K
Sbjct: 21 RRSKDREFRKLWTELRGTTLFFYNDKKD 48
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 31.8 bits (73), Expect = 4.5
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 979 QSTDSLEMDLTGIMTLQRRLSGMERDLAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIK 1038
++ D+L I L+R++ +E +L +++ + SLE + +E+ + E ++ I
Sbjct: 206 RNGDALRSAKEEITELRRQIQSLEIELQSLKKQKASLERQLAELEERYELELADYQDTIS 265
Query: 1039 QIRIIWEQLTQMLKERDAKLEEAGDL 1064
++ E+L Q+ E +L E +L
Sbjct: 266 ELE---EELQQLKAEMARQLREYQEL 288
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 31.8 bits (73), Expect = 4.9
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 31/136 (22%)
Query: 2065 FEKSAI---AQEERFSALERLTTFELKELNKRKEEEER---------KRQEE-------- 2104
K+ I QE++ + + FE ++ +E+ R R +
Sbjct: 433 QAKAEIRAIEQEKKKAEEAKAR-FEARQARLEREKAAREARHKKAAEARAAKDKDAVAAA 491
Query: 2105 ---LAAKQTPPTSPDQSAKDRLDGEEVKDKEKEGESRQEKQARGERPTSGADADHMEGTL 2161
+ AK+ T P +E Q + + E+ + A
Sbjct: 492 LARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADP------ 545
Query: 2162 VRKHEWEAIAKRASNR 2177
+K A RA +
Sbjct: 546 -KKAAVAAAIARAKAK 560
>gnl|CDD|241426 cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bisphosphate
4-phosphatase and Type II inositol 3,4-bisphosphate
4-phosphatase Pleckstrin homology (PH) domain. INPP4A
(also called Inositol polyphosphate 4-phosphatase type I)
and INPP4B (also called Inositol polyphosphate
4-phosphatase type II) both catalyze the hydrolysis of
the 4-position phosphate of phosphatidylinositol
3,4-bisphosphate and inositol 1,3,4-trisphosphate. They
differ in that INPP4A additionally catalyzes the
hydrolysis of the 4-position phosphate of inositol
3,4-bisphosphate, while INPP4B catalyzes the hydrolysis
of the 4-position phosphate of inositol 1,4-bisphosphate.
They both have a single PH domain followed by a C2
domain. PH domains have diverse functions, but in general
are involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but all
have a common fold, which is electrostatically polarized.
Less than 10% of PH domains bind phosphoinositide
phosphates (PIPs) with high affinity and specificity. PH
domains are distinguished from other PIP-binding domains
by their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH domain
proteins to the plasma membrane. A few display strong
specificity in lipid binding. Any specificity is usually
determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 116
Score = 29.9 bits (68), Expect = 5.1
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 23/90 (25%)
Query: 2186 LRGTLLYFYKDQKSAKSSPEIYYKNETPFELRG----GSAQVA-DDYSKKKHVFRVKADN 2240
LRG LL+++K NE E G + +V ++ F + +
Sbjct: 22 LRGNLLFYFKS-------------NEPGSEPAGVIVLENCRVQREEPDPGGFAFSLVFKD 68
Query: 2241 GAEYLFQAKNDEEMNKWVTALSNVCEQQAS 2270
+Y F +++EE ++W+ A+ +QAS
Sbjct: 69 EKKYRFSCRSEEERDEWIEAI-----KQAS 93
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 31.6 bits (73), Expect = 5.4
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 12/61 (19%)
Query: 1010 AKLDSL-EAEAVAIEKEHPE------EAEAIRERIKQIRIIWEQLT-----QMLKERDAK 1057
A L+ L +A+ V + K++ + EAI+ R+ QI+ E+ T + L+ER AK
Sbjct: 311 ATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAK 370
Query: 1058 L 1058
L
Sbjct: 371 L 371
>gnl|CDD|221667 pfam12618, DUF3776, Protein of unknown function (DUF3776). This
domain family is found in eukaryotes, and is
approximately 100 amino acids in length.
Length = 111
Score = 29.9 bits (67), Expect = 5.7
Identities = 15/66 (22%), Positives = 24/66 (36%)
Query: 2080 ERLTTFELKELNKRKEEEERKRQEELAAKQTPPTSPDQSAKDRLDGEEVKDKEKEGESRQ 2139
+ L+ E KEEE + + P S ++ KEK+G Q
Sbjct: 7 DELSKSTAPEDVSEKEEEPTSATDSEKFSISEQNQPKMSKEEVESTISHNRKEKQGNCFQ 66
Query: 2140 EKQARG 2145
K++R
Sbjct: 67 LKRSRL 72
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of the
RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 31.6 bits (72), Expect = 5.9
Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 15/114 (13%)
Query: 2057 NLIKKHEAFEKSAIAQEERFSALE----RLTTFELKELNKR-----------KEEEERKR 2101
L ++ + +E L +T E K +KR +E+E +
Sbjct: 318 ELRRRRVNDVIRPLVREHNNDQLNVKLRNPSTKESKMRDKRRARLDPIDFEEVDEDEDEE 377
Query: 2102 QEELAAKQTPPTSPDQSAKDRLDGEEVKDKEKEGESRQEKQARGERPTSGADAD 2155
+E+ + + D + E+ + + + S +D++
Sbjct: 378 EEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 31.3 bits (71), Expect = 6.1
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 2086 ELKELNKRKEEEERKRQEELAAKQTPPTSPDQSAKDRLDGEEVKDKEKEGESR-QEKQAR 2144
LKE NK+ ++ +K E + ++ +++L EE + K+KE +EK+ +
Sbjct: 370 LLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
Query: 2145 GER 2147
ER
Sbjct: 430 DER 432
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 31.2 bits (71), Expect = 6.3
Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 2051 TIDEVENLIKKHEAFE--KSAIAQEERFSALERLTTFELKELNKRKEEEERKRQEELAAK 2108
++ EV+ + EA+E SA + + ++L K L +++++E K +EE +
Sbjct: 75 SLKEVKLERQAQEAYENWLSAKQAQRQ----KKL----QKLLEEKQKQEREKEREEAELR 126
Query: 2109 QTPPTSPDQSAKDRLDGEEVKDKEKEGESRQEKQARGERPTSGADADHMEGTLVRKHEWE 2168
Q + AK++ + E + K ++ ++ + + E S + + R E
Sbjct: 127 Q-------RLAKEKYE-EWCRQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERNVSQE 178
Query: 2169 AIAKR 2173
KR
Sbjct: 179 EAKKR 183
>gnl|CDD|223022 PHA03248, PHA03248, DNA packaging tegument protein UL25; Provisional.
Length = 583
Score = 31.5 bits (72), Expect = 6.4
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 989 TGIMTLQRRLSGMERDLAAIQAKLDSLEAEAVAIEKEHPEEAEAIRERIKQIRIIWEQLT 1048
T RL+ +E A A LD+L +A I P E + ++R I QL
Sbjct: 46 LSRETAAARLALLEARNRAAAAALDNLAGQAATI----PVEVDR------RLRPIERQLE 95
Query: 1049 QMLKERDAKLEEA 1061
++ LEEA
Sbjct: 96 EVADALAD-LEEA 107
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 31.5 bits (71), Expect = 7.1
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 11/82 (13%)
Query: 2098 ERKRQEELAAKQTPPTSPDQSAKDRLDGEEVKDK-----------EKEGESRQEKQARGE 2146
ER +E + + ++S + E + K E++GE E + +
Sbjct: 643 ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAK 702
Query: 2147 RPTSGADADHMEGTLVRKHEWE 2168
+ + E + E E
Sbjct: 703 EADHKGETEAEEVEHEGETEAE 724
>gnl|CDD|221451 pfam12167, DUF3596, Domain of unknown function (DUF3596). This
presumed domain is functionally uncharacterized.This
domain family is found in bacteria and viruses, and is
approximately 90 amino acids in length. The family is
found in association with pfam00589.
Length = 88
Score = 28.8 bits (65), Expect = 7.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 1088 EDTPSSLADAEKLLNQHQAIREEIDNYTEDYKK 1120
DTP++ AE+LL + I EI T DY +
Sbjct: 29 PDTPANRKKAERLLAR---IEAEIALGTFDYAE 58
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 31.3 bits (71), Expect = 8.3
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 2053 DEVENLIKKHEAFEKSAIAQEERFSALERLTTFELKELNKRKEEEERKRQEELAAKQTPP 2112
+E+ LI+K A EK E++ LE+L LKE K K+E E++ +E ++
Sbjct: 511 EEINVLIEKLSALEKE---LEQKNEHLEKL----LKEQEKLKKELEQEMEELKERERNKK 563
Query: 2113 TSPDQSAKDRL-----DGEEVKDKEKEGESRQEK 2141
++ A++ L + E + + KE + + K
Sbjct: 564 LELEKEAQEALKALKKEVESIIRELKEKKIHKAK 597
>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate
transport and metabolism].
Length = 393
Score = 31.1 bits (71), Expect = 8.4
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 532 FQEMLYILDSMEELKMRLLSDDYGKHL--MGVEDLLQKHSLVEADINVLGERV 582
+Q +L I S E + +LS G H+ M D+L H AD+ V + V
Sbjct: 108 YQNLLIIRRSDPE-YVLILS---GDHIYKMDYSDMLDFHIESGADVTVAVKEV 156
>gnl|CDD|223436 COG0359, RplI, Ribosomal protein L9 [Translation, ribosomal structure
and biogenesis].
Length = 148
Score = 29.9 bits (68), Expect = 8.5
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 2081 RLTTFELKELNKRKEEEERKRQEELAAKQTPPTSPDQSAKDRLDGEEVKDKEKEGES 2137
T LK L R+ + E+K EELA ++ K++L+G+ V+ K GE
Sbjct: 38 PATKGNLKLLEARRAKLEKKAAEELAEA--------EALKEKLEGKTVEIAVKAGED 86
>gnl|CDD|233912 TIGR02535, hyp_Hser_kinase, proposed homoserine kinase. The genes in
this family are largely adjacent to genes involved in the
biosynthesis of threonine (aspartate kinase, homoserine
dehydrogenase and threonine synthase) in genomes which
are lacking any other known homoserine kinase, and in
which the presence of a homoserine kinase would indicate
a complete pathway for the biosynthesis of threonine.
These genes are a member of the (now subfamily, formerly
equivalog) TIGR00306 model describing the archaeal form
of 2,3-bisphosphoglycerate-independent phosphoglycerate
mutase. All of these are members of a superfamily
(pfam01676) of metalloenzyme also including
phosphopentomutase alkaline phosphatases and sulfatases.
The proposal that this family encodes a kinase is based
on analogy to phosphomutases which are intramolecular
phosphotransferases. A mutase active site could evolve to
bring together homoserine and a phosphate donor such as
phosphoenolpyruvate resulting in a kinase activity.
Length = 396
Score = 30.8 bits (70), Expect = 8.7
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 1544 RINLICNNGRKLID--EGHEDSAEFTSLIEDL 1573
R NL+ K+ D GH S E +LIEDL
Sbjct: 95 RCNLVTVEDGKMKDFSAGHISSEEAATLIEDL 126
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 31.1 bits (70), Expect = 8.9
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 1399 MNELEKQIENEDTGSDLASVNILMQKQQMIETQMAVKAKQVSELETQAEILQKTVPDKME 1458
M EL++Q+ N + N ++ + K V + + +E
Sbjct: 2111 MGELKEQLSNTVVILGVKEKNADDALSGTPGERLEREVKSVFVEAPRD------MLFLLE 2164
Query: 1459 EIVVKKSAVEQRFEKIKEP-LLARQRALEKKKEA 1491
E V K+ +F+ K+P +L + K K+A
Sbjct: 2165 EEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKA 2198
>gnl|CDD|227250 COG4913, COG4913, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1104
Score = 31.1 bits (70), Expect = 8.9
Identities = 54/254 (21%), Positives = 91/254 (35%), Gaps = 34/254 (13%)
Query: 1348 PELAELIGPKISDLGQQFDDLETTTKDKGERLFDSNREVLIHQTCDDIDSWMNELEKQIE 1407
PE +GP ++ LGQ D KD +L D + L N+ + +
Sbjct: 571 PEELSALGPGVTILGQTGDPTTRWEKDDRRKLGDRSTYRL---------GSTNDAKVETL 621
Query: 1408 NEDTGSDLASVNILMQKQQMIETQMAVKAKQVSELETQAEILQKTVPDKMEEIVVKKSAV 1467
E + L+ + M K + + +L+ QA L I + SA
Sbjct: 622 RETVKAMLSREDFYMIKIMRQQ-------GEYIKLQEQANALAHIQALNFASIDL-PSAQ 673
Query: 1468 EQRFEKIKEPLLARQRALEKKKEAYQFRRDIEDEK---LWIAEKLPSAKSTEYG---NSL 1521
Q E L AR L + + D + E+ + TE L
Sbjct: 674 RQIAE-----LQARLERLTHTQSDIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDL 728
Query: 1522 FNVHMLKKKNQSLAKEIDNHEPRINLICNNGRKLIDEGHEDSAEFTSLIEDLMDRWQQLK 1581
ML +K S+AK+ + L + ++ E H+D + IE + R +QL+
Sbjct: 729 KRAAMLSRKVHSIAKQGMTGALQA-LGAAHFPQVAPEQHDDIVD----IERIEHR-RQLQ 782
Query: 1582 KAVDERRSKLIQSE 1595
K +D ++L +
Sbjct: 783 KRIDAVNARLRRLR 796
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner membrane
complex of itself with TolQ and TolR to the outer
membrane complex of TolB and OprL (also called Pal). Most
of the length of the protein consists of low-complexity
sequence that may differ in both length and composition
from one species to another, complicating efforts to
discriminate TolA (the most divergent gene in the tol-pal
system) from paralogs such as TonB. Selection of members
of the seed alignment and criteria for setting scoring
cutoffs are based largely conserved operon struction.
//The Tol-Pal complex is required for maintaining outer
membrane integrity. Also involved in transport (uptake)
of colicins and filamentous DNA, and implicated in
pathogenesis. Transport is energized by the proton motive
force. TolA is an inner membrane protein that interacts
with periplasmic TolB and with outer membrane porins
ompC, phoE and lamB [Transport and binding proteins,
Other, Cellular processes, Pathogenesis].
Length = 346
Score = 30.6 bits (69), Expect = 9.3
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 2060 KKHEAFEKSAIAQEERFSALERLTTFELKELNKRKEEEERKRQEELAAKQTPPTSPDQSA 2119
K+ +A E A E + E + KE K++ EEE K + AK+ + ++
Sbjct: 117 KQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAE 176
Query: 2120 KDRLDGEEVKDKEKEGESRQEKQA 2143
+ E K K K E++ + +A
Sbjct: 177 AEAKAKAEAKAKAKAEEAKAKAEA 200
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this family
are typically between 146 and 237 amino acids in length.
There are two conserved sequence motifs: QYGP and PKLY.
Length = 155
Score = 29.7 bits (67), Expect = 9.9
Identities = 10/63 (15%), Positives = 22/63 (34%)
Query: 2087 LKELNKRKEEEERKRQEELAAKQTPPTSPDQSAKDRLDGEEVKDKEKEGESRQEKQARGE 2146
+EL+ +EEE +E + ++ EV + E E + + + +
Sbjct: 88 FRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Query: 2147 RPT 2149
Sbjct: 148 PSK 150
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 30.8 bits (71), Expect = 9.9
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 1007 AIQAKLDSLEAE------AVAIEKEHPEEAEAIRERIKQIRIIWEQLTQMLKERDAKLEE 1060
+Q +L+ L+AE + K E+AEA+ +K+++ + L L E +A+LEE
Sbjct: 39 ELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98
Query: 1061 A 1061
Sbjct: 99 L 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.130 0.364
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 117,906,740
Number of extensions: 12122953
Number of successful extensions: 18348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17260
Number of HSP's successfully gapped: 720
Length of query: 2301
Length of database: 10,937,602
Length adjustment: 112
Effective length of query: 2189
Effective length of database: 5,969,954
Effective search space: 13068229306
Effective search space used: 13068229306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (29.6 bits)