BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1806
         (244 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JRS|A Chain A, Crystal Structure Of (+)-Aba-Bound Pyl1
 pdb|3JRS|B Chain B, Crystal Structure Of (+)-Aba-Bound Pyl1
 pdb|3JRS|C Chain C, Crystal Structure Of (+)-Aba-Bound Pyl1
          Length = 208

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 102 TSGQISLEFFKKNKKHWPFNEICIPWELWNVRLE-----LIKLNNEQERRLSCEKIVNVL 156
           T G+  L  +K       F +      +W V LE     + + N+E++ RL  + ++ + 
Sbjct: 135 TGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLN 194

Query: 157 TQQVIYICDVMNRN 170
            Q++  I + MNRN
Sbjct: 195 LQKLASITEAMNRN 208


>pdb|3KAY|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl1
 pdb|3KAY|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl1
 pdb|3NMN|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
           Receptor Pyl1 In Complex With Type 2c Protein
           Phosphatase Abi1
 pdb|3NMN|C Chain C, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
           Receptor Pyl1 In Complex With Type 2c Protein
           Phosphatase Abi1
          Length = 178

 Score = 27.7 bits (60), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 102 TSGQISLEFFKKNKKHWPFNEICIPWELWNVRLE-----LIKLNNEQERRLSCEKIVNVL 156
           T G+  L  +K       F +      +W V LE     + + N+E++ RL  + ++ + 
Sbjct: 105 TGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLN 164

Query: 157 TQQVIYICDVMNRN 170
            Q++  I + MNRN
Sbjct: 165 LQKLASITEAMNRN 178


>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
           Proteinase
 pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
           Proteinase Complexed With Pepstatin
          Length = 323

 Score = 26.9 bits (58), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 24  IFHTILFHRSYGKFDYKQNEENKYSVGTLGYNDVD 58
           IF   L H + G +D+   + +KY+ G++ Y DVD
Sbjct: 152 IFAVALKHNAPGVYDFGYTDSSKYT-GSITYTDVD 185


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,264,450
Number of Sequences: 62578
Number of extensions: 297836
Number of successful extensions: 625
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 6
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)