Query psy1806
Match_columns 244
No_of_seqs 131 out of 146
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 21:33:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4493|consensus 100.0 3.2E-67 7E-72 454.4 14.2 218 1-244 1-219 (219)
2 PF07855 DUF1649: Protein of u 100.0 1.5E-60 3.2E-65 404.1 18.1 157 8-180 1-161 (163)
3 PF02301 HORMA: HORMA domain; 95.3 0.78 1.7E-05 39.4 13.8 140 15-205 7-168 (208)
4 KOG3285|consensus 95.0 0.46 1E-05 41.8 11.3 148 6-205 8-158 (203)
5 PF12633 Adenyl_cycl_N: Adenyl 49.9 36 0.00078 30.4 5.2 51 44-112 98-157 (204)
6 PF13739 DUF4163: Domain of un 37.4 83 0.0018 22.9 4.8 29 59-87 13-44 (101)
7 PF04021 Class_IIIsignal: Clas 33.9 3.7 8.1E-05 25.5 -2.5 9 102-110 1-9 (28)
8 cd00491 4Oxalocrotonate_Tautom 33.4 1.2E+02 0.0026 20.3 4.7 28 131-158 2-29 (58)
9 PRK01964 4-oxalocrotonate taut 26.6 1.8E+02 0.004 20.1 4.8 28 131-158 3-30 (64)
10 TIGR00013 taut 4-oxalocrotonat 26.2 1.8E+02 0.0038 19.9 4.7 28 131-158 2-30 (63)
11 PRK00745 4-oxalocrotonate taut 26.0 1.7E+02 0.0037 19.9 4.6 27 131-157 3-29 (62)
12 PRK02220 4-oxalocrotonate taut 24.5 2E+02 0.0044 19.4 4.7 29 131-159 3-31 (61)
13 smart00224 GGL G protein gamma 23.0 1.6E+02 0.0035 21.1 4.0 24 155-178 21-45 (63)
No 1
>KOG4493|consensus
Probab=100.00 E-value=3.2e-67 Score=454.40 Aligned_cols=218 Identities=44% Similarity=0.761 Sum_probs=209.4
Q ss_pred CCccceEEEEEeccccHHHHHHHHHHHHhhhhhcCccccccCCccccccccccccccccceeeeeeeeeCChhHHHHHHH
Q psy1806 1 MNARSQTFELTIEGHQIDEVVSSIFHTILFHRSYGKFDYKQNEENKYSVGTLGYNDVDCNFIDFTYVCCSSADLNQTVRK 80 (244)
Q Consensus 1 MN~r~~~lel~~e~~qv~evv~~IlHTIlFHR~~G~v~p~~~~~~~~~~g~vg~~dvdcd~ldiTyv~~~~~eL~~~I~~ 80 (244)
||||+..|++++|++|+.|+|.|+|||+||||.+|++.|+. +++||+||||++|||||++|||||+|++.||+.+|++
T Consensus 1 mn~R~e~l~~t~Egrqv~eaV~~ifh~vLlhR~vgkf~y~~--~~~~s~GtVg~kdvdce~iDiTYV~~~s~EL~~kl~~ 78 (219)
T KOG4493|consen 1 MNKRSEVLKLTVEGRQVTEAVTCIFHTVLLHREVGKFVYGV--ELHRSFGTVGAKDVDCEFIDITYVRCVSAELNEKLDE 78 (219)
T ss_pred CchHHHHHHHHhhhhccchhhhhHHHHHHHHHhhhheEecc--eeEEEeccccccccceeEEEEEEEEechHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCceeEEEEEEeeec-cCCCCCCCCccceeeEEEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q psy1806 81 HVNQFSNILRNTQDSNVSPNPTSGQISLEFFKKN-KKHWPFNEICIPWELWNVRLELIKLNNEQERRLSCEKIVNVLTQQ 159 (244)
Q Consensus 81 ~i~~f~~~l~~~~~~~~~~~~~~GqIsL~FfeKk-kk~Wf~~~E~v~WE~W~I~v~v~~~~~e~er~~~r~~~~~~L~e~ 159 (244)
+|++|+++|++++ +.+.|||+|+||||+ |++||+++|++|||+|+|+++|+.+.++++|+.+|+.+.+.|.++
T Consensus 79 ~i~qF~~~ir~~~------~~g~gQi~L~FYekskK~~Wf~~~e~ipWEqW~l~l~vl~~~~~~e~q~~rs~vs~~l~ek 152 (219)
T KOG4493|consen 79 KIAQFIDTIRNEA------GAGVGQISLEFYEKSKKKRWFFKDETIPWEQWTLHLDVLEEESEDERQYCRSHVSDLLEEK 152 (219)
T ss_pred HHHHHHHHHHhCC------CCCcceEeeeeeecccCCCCCcCCCCccceeEEEEEEEeecccccccHHHHHHHHHHHHHH
Confidence 9999999999987 566799999999995 888999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCCCCCCccccccccccccCCCceeeeEEEeecCCcccccccCCCCCCCCCCCCCCchhHHHHHHHhh
Q psy1806 160 VIYICDVMNRNDYVPNIPIKSELDLIFDTSYRDIQPYLFKIHFLNSSQYNLVDEACPGVSNPAGHTASSSVAHFVKKTIK 239 (244)
Q Consensus 160 l~kIi~~vN~~dhIPpIts~~e~~~vfdts~~D~~PfpfkI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkk~~~ 239 (244)
+.+|++.+|+++|.|++|+++|+++||||+|.|+|||+||+.+...+ . ...|++++|++.++
T Consensus 153 v~~i~E~~Nr~~y~pk~ptq~e~~~iF~t~~~DvqPyl~k~~~~~~~--------------~----~~~si~~~~~~~i~ 214 (219)
T KOG4493|consen 153 VEQIVEAMNRRSYLPKMPTQSESDNIFDTPFEDVQPYLFKGWGSLLD--------------F----LRMSIPNVMSGHIK 214 (219)
T ss_pred HHHHHHHhhhhccCcCCchhhhcchhccCCccccCCceeeeeeeech--------------h----hhccchhHHHHHhh
Confidence 99999999999999999999999999999999999999999887665 3 55699999999999
Q ss_pred hhccC
Q psy1806 240 DTLLF 244 (244)
Q Consensus 240 ~t~~~ 244 (244)
+||+.
T Consensus 215 ~tl~v 219 (219)
T KOG4493|consen 215 TTLAV 219 (219)
T ss_pred hhhcC
Confidence 99974
No 2
>PF07855 DUF1649: Protein of unknown function (DUF1649); InterPro: IPR012445 This family represents Autophagy-related protein 101.
Probab=100.00 E-value=1.5e-60 Score=404.07 Aligned_cols=157 Identities=36% Similarity=0.663 Sum_probs=146.2
Q ss_pred EEEEeccccHHHHHHHHHHHHhhhhhcCccccccCCccccccccccccccccceeeeeeeeeCChhHHHHHHHHHHHHHH
Q psy1806 8 FELTIEGHQIDEVVSSIFHTILFHRSYGKFDYKQNEENKYSVGTLGYNDVDCNFIDFTYVCCSSADLNQTVRKHVNQFSN 87 (244)
Q Consensus 8 lel~~e~~qv~evv~~IlHTIlFHR~~G~v~p~~~~~~~~~~g~vg~~dvdcd~ldiTyv~~~~~eL~~~I~~~i~~f~~ 87 (244)
|||++|++||+|||+||||||||||+||+|+ |+|||||+||+|||+|+|+||+++|+++|++|++
T Consensus 1 ~el~~e~~~v~evv~~ilHTIlFhR~~G~v~---------------p~dv~~e~ldiTy~~~~~~el~~~Id~ki~~f~~ 65 (163)
T PF07855_consen 1 LELFAERSQVREVVKAILHTILFHRAFGTVR---------------PKDVTCEFLDITYPRCNDPELESLIDEKINQFIR 65 (163)
T ss_pred CeeeecHHHHHHHHHHHHHHHHhhhccCccc---------------ccccccceecceeeccCcHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999988 5789999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCceeEEEEEEeeec-cCCCC--CCCCccceeeEEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy1806 88 ILRNTQDSNVSPNPTSGQISLEFFKKN-KKHWP--FNEICIPWELWNVRLELIKLNNEQERRLSCEKIVNVLTQQVIYIC 164 (244)
Q Consensus 88 ~l~~~~~~~~~~~~~~GqIsL~FfeKk-kk~Wf--~~~E~v~WE~W~I~v~v~~~~~e~er~~~r~~~~~~L~e~l~kIi 164 (244)
++++++.++ +++..+|||+|+||||| ||+|| .++|++|||+|+|+|+|++++++.||+++|++++++|+++|++|+
T Consensus 66 ~l~~~~~~~-~~~~~~gqI~l~F~ekr~kk~WF~~~~~e~v~WE~W~I~v~v~~~~~~~er~~~r~~~~~~L~~~l~~Ii 144 (163)
T PF07855_consen 66 QLEKHPSKS-SNGLGRGQISLQFYEKRRKKSWFVGSGEEEVPWEQWTINVTVATPRTESERQKVREAVEDSLREALFKII 144 (163)
T ss_pred HHHhCcCcc-CCCcceEEEEEEEEeecccccccccCCcccccceEEEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999876322 24567999999999999 45598 599999999999999999999999999999999999999999999
Q ss_pred hhhcCC-CCCCCCCCcc
Q psy1806 165 DVMNRN-DYVPNIPIKS 180 (244)
Q Consensus 165 ~~vN~~-dhIPpIts~~ 180 (244)
++||++ ||||||||++
T Consensus 145 ~~vn~~kdhIPpIts~~ 161 (163)
T PF07855_consen 145 EIVNRHKDHIPPITSSD 161 (163)
T ss_pred HHHCcCcccCCCCCCCC
Confidence 999999 9999999964
No 3
>PF02301 HORMA: HORMA domain; InterPro: IPR003511 The HORMA (for Hop1p, Rev7p and MAD2) domain has been suggested to recognise chromatin states that result from DNA adducts, double stranded breaks or non-attachment to the spindle and acts as an adaptor that recruits other proteins. Hop1 is a meiosis-specific protein, Rev7 is required for DNA damage induced mutagenesis, and MAD2 is a spindle checkpoint protein which prevents progression of the cell cycle upon detection of a defect in mitotic spindle integrity [, ].; GO: 0007067 mitosis; PDB: 3ABD_B 3ABE_C 4AEZ_H 2V64_A 2VFX_A 1GO4_D 2QYF_C 3GMH_B 1KLQ_A 1S2H_A ....
Probab=95.28 E-value=0.78 Score=39.40 Aligned_cols=140 Identities=10% Similarity=0.207 Sum_probs=82.5
Q ss_pred ccHHHHHHHHHHHHhhhhhc-CccccccCCccccccccccccccccceeeeee------eeeCChhHHHHHHHHHHHHHH
Q psy1806 15 HQIDEVVSSIFHTILFHRSY-GKFDYKQNEENKYSVGTLGYNDVDCNFIDFTY------VCCSSADLNQTVRKHVNQFSN 87 (244)
Q Consensus 15 ~qv~evv~~IlHTIlFHR~~-G~v~p~~~~~~~~~~g~vg~~dvdcd~ldiTy------v~~~~~eL~~~I~~~i~~f~~ 87 (244)
..+++.+.+-+|+|||.|-+ +.=.+.. ..+.|+.. ..+..+.|...|++ ...+
T Consensus 7 ~~v~~~L~~~is~Ily~R~lyP~~~F~~-----------------~~~~~~~~k~l~~~~~~~~~~l~~~i~~---~v~d 66 (208)
T PF02301_consen 7 ELVKEFLEVAISQILYLRGLYPEDCFED-----------------RRFYGLKLKVLVPNYSSRAPQLIDYIEK---GVFD 66 (208)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS-GGGEEE-----------------EEETTEEE-----TEEE--HHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHCcE-----------------EEecCccccccccccCCCcHHHHHHHHh---hHHH
Confidence 35789999999999999965 3222211 22333333 46788899988887 5556
Q ss_pred HHHhcCCCCCCCCCceeEEEEEEeeeccCCCCCCCCccceeeEEEEEEEeecCCH------------HHH---HHHHHHH
Q psy1806 88 ILRNTQDSNVSPNPTSGQISLEFFKKNKKHWPFNEICIPWELWNVRLELIKLNNE------------QER---RLSCEKI 152 (244)
Q Consensus 88 ~l~~~~~~~~~~~~~~GqIsL~FfeKkkk~Wf~~~E~v~WE~W~I~v~v~~~~~e------------~er---~~~r~~~ 152 (244)
+|++. .--+|.|.+|++ -+. .+.-+=|.|+.++.-...... +.. ..-.+.+
T Consensus 67 ai~k~---------~L~~v~l~I~~~-d~~----~~~~~lE~y~F~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (208)
T PF02301_consen 67 AIEKG---------YLKKVVLVIYDD-DPP----KSNEVLERYTFSFSYFPDGGPMSPEGSSISISNNTSEIDPITLDEV 132 (208)
T ss_dssp HHHTT---------SEEEEEEEEE-----E----TTTCEEEEEEEEEEE-TTGGGTSSC----------HHHCSSCHHHH
T ss_pred HHhhC---------cceEEEEEEEec-ccC----CCCceeEEEEEEEEecCCCCcccccccccccccccccccCCCHHHH
Confidence 66653 344789999986 111 244578999999987332210 000 0124567
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccccCCCceeeeEEEeecC
Q psy1806 153 VNVLTQQVIYICDVMNRNDYVPNIPIKSELDLIFDTSYRDIQPYLFKIHFLNS 205 (244)
Q Consensus 153 ~~~L~e~l~kIi~~vN~~dhIPpIts~~e~~~vfdts~~D~~PfpfkI~~~~~ 205 (244)
+.+++..|.+++..+.. +||+|. + .-+-|++.+..+
T Consensus 133 ~~~~~~~lr~l~~~~~~---L~~LP~-------------~-~~~~~~l~~~~~ 168 (208)
T PF02301_consen 133 QEQLRALLRKLISSTQS---LPPLPD-------------E-RTLTFKLLYYDD 168 (208)
T ss_dssp HHHHHHHHHHHHHHHCT---SSS--T-------------T-SSEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHhcc---CCCccC-------------C-ceEEEEEEEEeC
Confidence 77788888888877665 566654 1 137788876653
No 4
>KOG3285|consensus
Probab=94.98 E-value=0.46 Score=41.83 Aligned_cols=148 Identities=15% Similarity=0.233 Sum_probs=103.8
Q ss_pred eEEEEEeccccHHHHHHHHHHHHhhhhhcCccccccCCccccccccccccccccceeeeeeeeeCChhHHHHHHHHHHHH
Q psy1806 6 QTFELTIEGHQIDEVVSSIFHTILFHRSYGKFDYKQNEENKYSVGTLGYNDVDCNFIDFTYVCCSSADLNQTVRKHVNQF 85 (244)
Q Consensus 6 ~~lel~~e~~qv~evv~~IlHTIlFHR~~G~v~p~~~~~~~~~~g~vg~~dvdcd~ldiTyv~~~~~eL~~~I~~~i~~f 85 (244)
..+.|.=...-|.|-..==+.+|||+|..=+-. +| +...-.++|+-...|++|..-++.-+.|.
T Consensus 8 ~~isLkGSa~iV~EFf~y~iNSILyQRgiYPaE-------dF---------~~vkKYgLtllvs~D~elk~f~~~ilsQ~ 71 (203)
T KOG3285|consen 8 NCISLKGSAQIVSEFFEYGINSILYQRGIYPAE-------DF---------VRVKKYGLTLLVSHDEELKTFIRNILSQV 71 (203)
T ss_pred ceeEeechHHHHHHHHHhhhhHHHHhccCCcHH-------Hh---------hHHHhcCceEEEecCHHHHHHHHHHHHHH
Confidence 445556666778888888889999999864311 11 11233589999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCceeEEEEEEeeeccCCCCCCCCccceeeEEEEEEEeecCCH---HHHHHHHHHHHHHHHHHHHH
Q psy1806 86 SNILRNTQDSNVSPNPTSGQISLEFFKKNKKHWPFNEICIPWELWNVRLELIKLNNE---QERRLSCEKIVNVLTQQVIY 162 (244)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~GqIsL~FfeKkkk~Wf~~~E~v~WE~W~I~v~v~~~~~e---~er~~~r~~~~~~L~e~l~k 162 (244)
.+||.+.. --++.|---+|. ..-.=|+|..+++.....++ ..|.+-..++++.++..|.|
T Consensus 72 ~~WL~~~k---------iqklvlvI~~~~--------tgEvlErWqFnie~~~~~~d~~na~~~k~~~~iq~EIraviRQ 134 (203)
T KOG3285|consen 72 HEWLSKGK---------IQKLVLVITSKH--------TGEVLERWQFNIETENTASDGQNATRVKDLKRIQNEIRAVIRQ 134 (203)
T ss_pred HHHHHhCC---------cceEEEEEEecc--------cccchhheeeeeeeeccccCcccccchhHHHHHHHHHHHHHHH
Confidence 99999743 345566555653 22256888888877654433 24666677778888888888
Q ss_pred HhhhhcCCCCCCCCCCccccccccccccCCCceeeeEEEeecC
Q psy1806 163 ICDVMNRNDYVPNIPIKSELDLIFDTSYRDIQPYLFKIHFLNS 205 (244)
Q Consensus 163 Ii~~vN~~dhIPpIts~~e~~~vfdts~~D~~PfpfkI~~~~~ 205 (244)
|..-| .++|-..- ++-|.+-+-+.
T Consensus 135 ItasV---tfLP~Le~----------------~ctFdvLiyTd 158 (203)
T KOG3285|consen 135 ITASV---TFLPLLEE----------------ICTFDVLIYTD 158 (203)
T ss_pred Hhhhe---eecccccc----------------eeEEEEEEEeC
Confidence 76555 58998743 47788765443
No 5
>PF12633 Adenyl_cycl_N: Adenylate cyclase NT domain; InterPro: IPR024685 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria. This entry represents the N-terminal domain of class-I adenylate cyclases.
Probab=49.95 E-value=36 Score=30.44 Aligned_cols=51 Identities=24% Similarity=0.467 Sum_probs=35.0
Q ss_pred ccccccccccc------cccccceeeeeeeeeC---ChhHHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEEEEEEee
Q psy1806 44 ENKYSVGTLGY------NDVDCNFIDFTYVCCS---SADLNQTVRKHVNQFSNILRNTQDSNVSPNPTSGQISLEFFK 112 (244)
Q Consensus 44 ~~~~~~g~vg~------~dvdcd~ldiTyv~~~---~~eL~~~I~~~i~~f~~~l~~~~~~~~~~~~~~GqIsL~Ffe 112 (244)
.|-|++|++|. +|+|+ .+|++ +++=-+++++|.+.+.+|..+-. +-|.||=
T Consensus 98 ~GlY~MGS~gSi~Qs~~SDlDi------WvCh~~~L~~~~~~~Lq~K~~~i~~WA~~~g------------vEv~FfL 157 (204)
T PF12633_consen 98 LGLYSMGSTGSIGQSSSSDLDI------WVCHDSDLSPEERQLLQQKCDLIEQWAASFG------------VEVHFFL 157 (204)
T ss_pred EEEEecCCCccccCCCCCCCeE------EEEcCCCCCHHHHHHHHHHHHHHHHHHHHcC------------CEEEEEE
Confidence 56799999883 34443 45443 34555788999999999987532 6788885
No 6
>PF13739 DUF4163: Domain of unknown function (DUF4163); PDB: 3CYG_B.
Probab=37.39 E-value=83 Score=22.86 Aligned_cols=29 Identities=17% Similarity=0.420 Sum_probs=17.9
Q ss_pred cceeeeeeeeeCC---hhHHHHHHHHHHHHHH
Q psy1806 59 CNFIDFTYVCCSS---ADLNQTVRKHVNQFSN 87 (244)
Q Consensus 59 cd~ldiTyv~~~~---~eL~~~I~~~i~~f~~ 87 (244)
|--++++||.+.. +++...|.+.+...+.
T Consensus 13 ~~~~~i~yP~~~~~~~~~~~~~IN~~i~~~i~ 44 (101)
T PF13739_consen 13 CYEIDIKYPVIEGLKNKELQKKINDFIENQID 44 (101)
T ss_dssp SEEEEEEEEEE-S-S-HHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 4458999999965 6665555554444443
No 7
>PF04021 Class_IIIsignal: Class III signal peptide; InterPro: IPR007166 This entry represents an amino terminal motif QXSXEXXXL thought to be part of a class III signal sequence for a family of archaeal proteins. The Q residue is the +1 residue of the signal peptidase cleavage site []. Two proteins containing this motif are cleaved by a type IV pilin-like signal peptidase.
Probab=33.94 E-value=3.7 Score=25.45 Aligned_cols=9 Identities=78% Similarity=1.110 Sum_probs=6.4
Q ss_pred ceeEEEEEE
Q psy1806 102 TSGQISLEF 110 (244)
Q Consensus 102 ~~GqIsL~F 110 (244)
+|||+|+||
T Consensus 1 krGQ~SlE~ 9 (28)
T PF04021_consen 1 KRGQISLEF 9 (28)
T ss_pred CccHHhHHH
Confidence 367888775
No 8
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=33.40 E-value=1.2e+02 Score=20.26 Aligned_cols=28 Identities=11% Similarity=0.335 Sum_probs=17.4
Q ss_pred EEEEEEeecCCHHHHHHHHHHHHHHHHH
Q psy1806 131 NVRLELIKLNNEQERRLSCEKIVNVLTQ 158 (244)
Q Consensus 131 ~I~v~v~~~~~e~er~~~r~~~~~~L~e 158 (244)
.|++.+...++.++++++-+++.+.+.+
T Consensus 2 ~i~i~~~~grt~eqk~~l~~~i~~~l~~ 29 (58)
T cd00491 2 FVQIYILEGRTDEQKRELIERVTEAVSE 29 (58)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 3678888888877655555554444433
No 9
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=26.57 E-value=1.8e+02 Score=20.11 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=17.5
Q ss_pred EEEEEEeecCCHHHHHHHHHHHHHHHHH
Q psy1806 131 NVRLELIKLNNEQERRLSCEKIVNVLTQ 158 (244)
Q Consensus 131 ~I~v~v~~~~~e~er~~~r~~~~~~L~e 158 (244)
.|++++...++.+.++++.+++.+.+.+
T Consensus 3 ~v~i~l~~grt~eqk~~l~~~it~~l~~ 30 (64)
T PRK01964 3 IVQIQLLEGRPEEKIKNLIREVTEAISA 30 (64)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 3678888888877655555555544433
No 10
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=26.25 E-value=1.8e+02 Score=19.85 Aligned_cols=28 Identities=11% Similarity=0.291 Sum_probs=17.3
Q ss_pred EEEEEEe-ecCCHHHHHHHHHHHHHHHHH
Q psy1806 131 NVRLELI-KLNNEQERRLSCEKIVNVLTQ 158 (244)
Q Consensus 131 ~I~v~v~-~~~~e~er~~~r~~~~~~L~e 158 (244)
.|+|.+. ..++.+.++.+-+++.+.|.+
T Consensus 2 ~i~i~i~~~grt~eqK~~l~~~it~~l~~ 30 (63)
T TIGR00013 2 FVNIYILKEGRTDEQKRQLIEGVTEAMAE 30 (63)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 3678888 677877665555555544443
No 11
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=26.00 E-value=1.7e+02 Score=19.90 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=16.8
Q ss_pred EEEEEEeecCCHHHHHHHHHHHHHHHH
Q psy1806 131 NVRLELIKLNNEQERRLSCEKIVNVLT 157 (244)
Q Consensus 131 ~I~v~v~~~~~e~er~~~r~~~~~~L~ 157 (244)
.|+|.+...++.+.++.+.+++.+.|.
T Consensus 3 ~i~I~~~~grs~eqk~~l~~~it~~l~ 29 (62)
T PRK00745 3 TFHIELFEGRTVEQKRKLVEEITRVTV 29 (62)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 367888877887765555555444433
No 12
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=24.50 E-value=2e+02 Score=19.43 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=18.1
Q ss_pred EEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q psy1806 131 NVRLELIKLNNEQERRLSCEKIVNVLTQQ 159 (244)
Q Consensus 131 ~I~v~v~~~~~e~er~~~r~~~~~~L~e~ 159 (244)
.|++.+.+.++.+.++++.+++.+.|.+.
T Consensus 3 ~i~i~~~~Grs~eqk~~l~~~it~~l~~~ 31 (61)
T PRK02220 3 YVHIKLIEGRTEEQLKALVKDVTAAVSKN 31 (61)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 36777777788776655555555444443
No 13
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=23.00 E-value=1.6e+02 Score=21.12 Aligned_cols=24 Identities=4% Similarity=0.007 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhhcCC-CCCCCCCC
Q psy1806 155 VLTQQVIYICDVMNRN-DYVPNIPI 178 (244)
Q Consensus 155 ~L~e~l~kIi~~vN~~-dhIPpIts 178 (244)
...++...|+.++..+ .|.|-+.-
T Consensus 21 kvS~a~~~li~y~e~~~~~DP~l~g 45 (63)
T smart00224 21 KVSKAAEELLAYCEQHAEEDPLLTG 45 (63)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCcCC
Confidence 4556778889999888 88888843
Done!