RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1806
         (244 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 144 ERRLSCEKIVNVLTQQVIYICDVMNRNDYVPNIPIKSELDLIFDTSYRDIQPY-LFKIHF 202
           E +   + I++V     +   D  +  D   +I  K E+D I  +         LF    
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-- 70

Query: 203 LNSSQYNLVDEACPGVSNP 221
           L S Q  +V +    V   
Sbjct: 71  LLSKQEEMVQKFVEEVLRI 89



 Score = 33.3 bits (75), Expect = 0.087
 Identities = 24/189 (12%), Positives = 54/189 (28%), Gaps = 59/189 (31%)

Query: 54  YNDVDCNFIDFTYVCCSSADLNQTVRKHVNQFSN----------------ILRNTQDSNV 97
              +D N+        S +D +  ++  ++                    +L N Q++  
Sbjct: 206 LYQIDPNW-------TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 98  ----------------------SPNPTSGQISLEFFKKNKKHWPFNEICIPWELWNVRLE 135
                                     T+  ISL+                  E+ ++ L+
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS-----MTLTPD----EVKSLLLK 309

Query: 136 LIKLNNEQERRLSCEKIVNVLTQQVI--YICDVMNRNDYVPNIPIKSELDLIFDTSYRDI 193
            +    +   R       N     +I   I D +   D   ++    +L  I ++S   +
Sbjct: 310 YLDCRPQDLPREVLT--TNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVL 366

Query: 194 QPYLFKIHF 202
           +P  ++  F
Sbjct: 367 EPAEYRKMF 375



 Score = 29.1 bits (64), Expect = 1.8
 Identities = 27/214 (12%), Positives = 72/214 (33%), Gaps = 68/214 (31%)

Query: 4   RSQTFELTIEGHQIDEVVSS----IFHTIL-----FHRSYGKFDYKQNEENKYSVGTLGY 54
           + +   ++I    ++  V        H  +       +++   D      ++Y    +G+
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 55  NDVDCN-----------FIDFTYVCCSSADLNQTVRKHVNQFSNILRNTQDSNVSPNPTS 103
           +  +             F+DF +       L Q +R                + + N + 
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRF-------LEQKIRH--------------DSTAWNASG 518

Query: 104 GQIS-LEFFKKNKKHWPFNEICIPWELWNVRLELIKLNNEQERRLSCEKIVNVLTQ--QV 160
             ++ L+  K  K +     IC               + + ER ++   I++ L +  + 
Sbjct: 519 SILNTLQQLKFYKPY-----IC-------------DNDPKYERLVN--AILDFLPKIEEN 558

Query: 161 IYICDVMNRNDYVPNIPIKSELDLIFDTSYRDIQ 194
           +      +    +  I + +E + IF+ +++ +Q
Sbjct: 559 LICSKYTD----LLRIALMAEDEAIFEEAHKQVQ 588


>1oxw_A Patatin; alpha/beta class fold with approximately three layers;
           2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
          Length = 373

 Score = 27.2 bits (59), Expect = 6.1
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 17/141 (12%)

Query: 94  DSNVSPNPTSGQISLEFFKKNKKHWPFNEICIPWELWNVRLELIKLNNEQERRLSCEKIV 153
           + N  P   + +I   +F+   + +  +   +  +     L  +      E R+      
Sbjct: 77  NENNRPFAAAKEIVPFYFEHGPQIFNPSGQILGPKYDGKYLMQVLQEKLGETRVHQAL-- 134

Query: 154 NVLTQQVIYICDVMNRNDYVP---NIPIKSELDLIFDTSYRDI--QPYLFKIHFL----- 203
              T+ VI   D+      +    N+    ELD             P  F  H+      
Sbjct: 135 ---TEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTS 191

Query: 204 --NSSQYNLVDEACPGVSNPA 222
             +  ++NLVD A   V++PA
Sbjct: 192 NGDEYEFNLVDGAVATVADPA 212


>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
           protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
          Length = 360

 Score = 26.4 bits (59), Expect = 9.9
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 141 NEQERRLSCEKIVNVLTQQVIYICDVMNRNDYVPNIPIKSELDLIFDTSY 190
           +E E++     I+ V     +YI +   + D    I        I D  +
Sbjct: 12  SELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHE---FIVDKVF 58


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,556,995
Number of extensions: 192427
Number of successful extensions: 354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 7
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)