Query psy18061
Match_columns 60
No_of_seqs 103 out of 184
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 21:35:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f9k_A CAMP-dependent protein 99.8 1.7E-20 5.9E-25 114.4 0.9 54 4-57 30-83 (95)
2 2izx_A CAMP-dependent protein 99.5 1.4E-14 4.9E-19 75.3 4.5 40 17-56 1-40 (41)
3 2izy_A CAMP-dependent protein 99.5 9.2E-15 3.1E-19 80.8 3.7 44 14-57 1-44 (54)
4 2kyg_A CAMP-dependent protein 99.5 6.8E-15 2.3E-19 79.9 2.7 44 14-57 6-49 (50)
5 4din_B CAMP-dependent protein 99.4 6.1E-18 2.1E-22 117.1 -17.5 53 5-57 9-61 (381)
6 3tnp_B CAMP-dependent protein 99.0 2.5E-11 8.6E-16 85.2 0.0 42 16-57 2-43 (416)
7 3g36_A Protein DPY-30 homolog; 98.4 6.3E-07 2.1E-11 49.5 5.2 39 14-53 9-47 (55)
8 4efp_A 30KDA protein; VHS doma 38.1 58 0.002 22.2 4.6 40 10-50 26-65 (239)
9 3hpw_C Protein CCDA; alpha+bet 35.0 26 0.00089 17.1 1.9 17 8-24 13-29 (36)
10 2keb_A DNA polymerase subunit 29.2 94 0.0032 18.5 5.1 46 4-51 25-70 (101)
11 2jek_A RV1873; structural geno 28.1 94 0.0032 19.6 4.1 34 10-43 61-94 (145)
12 3n4p_A Terminase subunit UL89 27.6 23 0.0008 24.6 1.3 15 40-54 219-233 (279)
13 3av0_A DNA double-strand break 25.1 1.6E+02 0.0054 19.7 5.4 40 12-53 343-383 (386)
14 3d5l_A Regulatory protein RECX 23.3 1.5E+02 0.0051 18.8 4.6 45 10-54 77-122 (221)
15 1yqf_A Hypothetical protein LM 22.6 47 0.0016 21.2 2.0 32 7-38 155-186 (203)
16 2plx_B Peptide inhibitor; heli 22.5 38 0.0013 15.4 1.1 20 14-33 4-23 (26)
17 3jv1_A P22 protein; MAM33 fami 22.5 46 0.0016 20.9 1.9 32 7-38 134-165 (182)
18 3tso_C RAB11 family-interactin 21.7 1.2E+02 0.0041 17.1 3.6 18 23-40 40-57 (75)
19 3ffy_A Putative tetrapyrrole ( 21.7 38 0.0013 19.5 1.3 17 17-33 49-65 (115)
20 2gzd_C RAB11 family-interactin 20.2 1.2E+02 0.0041 18.2 3.3 14 27-40 76-89 (107)
No 1
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A
Probab=99.78 E-value=1.7e-20 Score=114.41 Aligned_cols=54 Identities=56% Similarity=1.019 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhccC
Q psy18061 4 NLEEEQSLRECEEYVQQHNVQQMLKDCIVQLCVTKPDNPISFLREYFQKLERFP 57 (60)
Q Consensus 4 ~~~~~~~~~e~~~Y~~~h~i~~LL~~~~~~ll~~rPedpi~Fl~~yf~~l~~~~ 57 (60)
++++|+++++|+.|+++|||++||+++|+.||++||+||++||++||++|++++
T Consensus 30 ~~~e~~~l~~ce~YlqkhgI~eLLqe~tv~Ll~~RPeDPv~FLaeYF~kL~~~r 83 (95)
T 4f9k_A 30 SHMEDESLKGCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEKEE 83 (95)
T ss_dssp --------CTTHHHHHHTCTTTTTHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999997754
No 2
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=99.52 E-value=1.4e-14 Score=75.32 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=36.2
Q ss_pred HhhhhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcc
Q psy18061 17 YVQQHNVQQMLKDCIVQLCVTKPDNPISFLREYFQKLERF 56 (60)
Q Consensus 17 Y~~~h~i~~LL~~~~~~ll~~rPedpi~Fl~~yf~~l~~~ 56 (60)
|.+|+|+++||++++.++|++||+|+++|+++||+++.+.
T Consensus 1 i~ip~~l~~lL~~~~~~vl~~qP~di~~f~a~yF~~l~~~ 40 (41)
T 2izx_A 1 IQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREA 40 (41)
T ss_dssp --CCTTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhC
Confidence 4689999999999999999999999999999999998753
No 3
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=99.51 E-value=9.2e-15 Score=80.77 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=37.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhccC
Q psy18061 14 CEEYVQQHNVQQMLKDCIVQLCVTKPDNPISFLREYFQKLERFP 57 (60)
Q Consensus 14 ~~~Y~~~h~i~~LL~~~~~~ll~~rPedpi~Fl~~yf~~l~~~~ 57 (60)
++.|.+|+++++||+++++++|+.||+||++|+++||+++.+.+
T Consensus 1 ~~~~~ip~~l~~lL~~f~~evlr~qP~Di~~Faa~YF~~L~~~~ 44 (54)
T 2izy_A 1 MGHIQIPPGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLREAR 44 (54)
T ss_dssp ----CCCTTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred CCccccCccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhH
Confidence 46788999999999999999999999999999999999997654
No 4
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=99.50 E-value=6.8e-15 Score=79.86 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=40.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhccC
Q psy18061 14 CEEYVQQHNVQQMLKDCIVQLCVTKPDNPISFLREYFQKLERFP 57 (60)
Q Consensus 14 ~~~Y~~~h~i~~LL~~~~~~ll~~rPedpi~Fl~~yf~~l~~~~ 57 (60)
+.+|.+|+++++||++++..+|++||+||++|+++||++|.+.|
T Consensus 6 ~~~~~ip~~l~~lL~~~~~evlr~qP~Di~~Faa~yF~~l~~~r 49 (50)
T 2kyg_A 6 MSHIQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREAR 49 (50)
T ss_dssp TCCCCCCTTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHTC
T ss_pred cchhcCCccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcc
Confidence 44678999999999999999999999999999999999998754
No 5
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.41 E-value=6.1e-18 Score=117.09 Aligned_cols=53 Identities=58% Similarity=1.066 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhccC
Q psy18061 5 LEEEQSLRECEEYVQQHNVQQMLKDCIVQLCVTKPDNPISFLREYFQKLERFP 57 (60)
Q Consensus 5 ~~~~~~~~e~~~Y~~~h~i~~LL~~~~~~ll~~rPedpi~Fl~~yf~~l~~~~ 57 (60)
++++++.++|+.|+++|||++||++++++||++||+||++|+++||++|+..+
T Consensus 9 ~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 61 (381)
T 4din_B 9 SEEDESLKGCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEKEE 61 (381)
T ss_dssp -----CCCCSCCCSSSSCCSCCCCCCCSCSSCSSSSCSSTTSSSCSCSSCCC-
T ss_pred cccHHHHHHHHHHhhhhChHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhhc
Confidence 89999999999999999999999999999999999999999999999997654
No 6
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.03 E-value=2.5e-11 Score=85.15 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhccC
Q psy18061 16 EYVQQHNVQQMLKDCIVQLCVTKPDNPISFLREYFQKLERFP 57 (60)
Q Consensus 16 ~Y~~~h~i~~LL~~~~~~ll~~rPedpi~Fl~~yf~~l~~~~ 57 (60)
+|-+|+|+++||++||+++|+.||+|+++|+++||++|++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 43 (416)
T 3tnp_B 2 SIEIPAGLTELLQGFTVEVLRHQPADLLEFALQHFTRLQQEN 43 (416)
T ss_dssp ------------------------------------------
T ss_pred ccCCCccHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh
Confidence 477999999999999999999999999999999999997765
No 7
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=98.40 E-value=6.3e-07 Score=49.52 Aligned_cols=39 Identities=33% Similarity=0.555 Sum_probs=31.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy18061 14 CEEYVQQHNVQQMLKDCIVQLCVTKPDNPISFLREYFQKL 53 (60)
Q Consensus 14 ~~~Y~~~h~i~~LL~~~~~~ll~~rPedpi~Fl~~yf~~l 53 (60)
.++|+.++=.+-|++++ ..|+..||+||+.|+++|+-+-
T Consensus 9 ~R~YL~~~V~p~L~~GL-~~lak~rP~DPi~~LA~~Ll~~ 47 (55)
T 3g36_A 9 TRAYLDQTVVPILLQGM-AVLAKERPPNPIEFLASYLLKN 47 (55)
T ss_dssp HHHHHHTTTHHHHHHHH-HHHHHHCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHh
Confidence 57899877666666665 5788999999999999998553
No 8
>4efp_A 30KDA protein; VHS domain, beta-trefoil, unknown function; HET: 0AF PGE; 1.33A {Bombyx mori} PDB: 4efq_A* 4efr_A* 3pub_A
Probab=38.07 E-value=58 Score=22.16 Aligned_cols=40 Identities=5% Similarity=0.254 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy18061 10 SLRECEEYVQQHNVQQMLKDCIVQLCVTKPDNPISFLREYF 50 (60)
Q Consensus 10 ~~~e~~~Y~~~h~i~~LL~~~~~~ll~~rPedpi~Fl~~yf 50 (60)
....+..|-...+ .++.++.+..|++..+-|.+.|+-...
T Consensus 26 Av~~~~~l~~~~~-g~ii~~~VnrLi~~~~rN~m~faYKLW 65 (239)
T 4efp_A 26 AVEKSKHLYEEKK-SEVITNVVNKLIRNNKMNCMEYAYQLW 65 (239)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CchHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3445667766666 999999999999999999999986543
No 9
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=34.98 E-value=26 Score=17.05 Aligned_cols=17 Identities=6% Similarity=0.333 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhhhHH
Q psy18061 8 EQSLRECEEYVQQHNVQ 24 (60)
Q Consensus 8 ~~~~~e~~~Y~~~h~i~ 24 (60)
.+..+.+.+|+++||++
T Consensus 13 ~~ai~~~N~~ve~~Gl~ 29 (36)
T 3hpw_C 13 QEGMAEVARFIEMNGSF 29 (36)
T ss_dssp HHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 45567789999999976
No 10
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=29.17 E-value=94 Score=18.50 Aligned_cols=46 Identities=9% Similarity=0.061 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy18061 4 NLEEEQSLRECEEYVQQHNVQQMLKDCIVQLCVTKPDNPISFLREYFQ 51 (60)
Q Consensus 4 ~~~~~~~~~e~~~Y~~~h~i~~LL~~~~~~ll~~rPedpi~Fl~~yf~ 51 (60)
.+..+.-++|.+.+-+...- +++..++..++..+= |+.+|.-+|+.
T Consensus 25 ~Vsae~L~eEfdefGi~~~d-~VldKc~ELC~~y~l-da~e~VeeWmA 70 (101)
T 2keb_A 25 SASAQQLAEELQIFGLDCEE-ALIEKLVELCVQYGQ-NEEGMVGELIA 70 (101)
T ss_dssp CCCHHHHHHHHHHHTCBCCH-HHHHHHHHHHHHHTC-CHHHHHHHHHH
T ss_pred hccHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 45566677788888876666 899999999888885 69999888764
No 11
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=28.10 E-value=94 Score=19.57 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhCCCCHH
Q psy18061 10 SLRECEEYVQQHNVQQMLKDCIVQLCVTKPDNPI 43 (60)
Q Consensus 10 ~~~e~~~Y~~~h~i~~LL~~~~~~ll~~rPedpi 43 (60)
++.|+..|+.-+=+-.=|.+++..|+.....++.
T Consensus 61 sl~EA~AYL~hpvLg~RL~e~~~~ll~~~~~sa~ 94 (145)
T 2jek_A 61 SLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIE 94 (145)
T ss_dssp SHHHHHHHHHSTTHHHHHHHHHHHHHHCCSCCHH
T ss_pred CHHHHHHHHcChHHHHHHHHHHHHHHhccCCCHH
Confidence 3567999999999999999999988877655554
No 12
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=27.62 E-value=23 Score=24.62 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHh
Q psy18061 40 DNPISFLREYFQKLE 54 (60)
Q Consensus 40 edpi~Fl~~yf~~l~ 54 (60)
-||+.|+++.+++++
T Consensus 219 ~DPVeYL~eQi~ni~ 233 (279)
T 3n4p_A 219 HDPIEYLLEQIQNLH 233 (279)
T ss_dssp BCHHHHHHHHHHTCC
T ss_pred cChHHHHHHHHhhcE
Confidence 599999999999885
No 13
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=25.10 E-value=1.6e+02 Score=19.74 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=31.8
Q ss_pred HHHHHHhhhhhH-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy18061 12 RECEEYVQQHNV-QQMLKDCIVQLCVTKPDNPISFLREYFQKL 53 (60)
Q Consensus 12 ~e~~~Y~~~h~i-~~LL~~~~~~ll~~rPedpi~Fl~~yf~~l 53 (60)
+-..+|+...++ .+.+.++..+++- -+|-..++-+||.+.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~ 383 (386)
T 3av0_A 343 ELLVDYANRQGIDGDLVLSLYKALLN--NENWKELLDEYYNTK 383 (386)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHT--TCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHc--CchHHHHHHHHHHHH
Confidence 347888888776 6788888888876 788999999999864
No 14
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=23.34 E-value=1.5e+02 Score=18.82 Aligned_cols=45 Identities=4% Similarity=0.125 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhhhHH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy18061 10 SLRECEEYVQQHNVQ-QMLKDCIVQLCVTKPDNPISFLREYFQKLE 54 (60)
Q Consensus 10 ~~~e~~~Y~~~h~i~-~LL~~~~~~ll~~rPedpi~Fl~~yf~~l~ 54 (60)
+..|+.+++.+.|+. +.....+..|....==|=-.|+..|.....
T Consensus 77 S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~ 122 (221)
T 3d5l_A 77 TESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMI 122 (221)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 345688888888764 677778888888888888888888887653
No 15
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=22.64 E-value=47 Score=21.19 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhC
Q psy18061 7 EEQSLRECEEYVQQHNVQQMLKDCIVQLCVTK 38 (60)
Q Consensus 7 ~~~~~~e~~~Y~~~h~i~~LL~~~~~~ll~~r 38 (60)
++.-+..+..|++..||.+=|-+++......+
T Consensus 155 De~Lq~~l~~YLeeRGI~~~la~fl~~y~~~K 186 (203)
T 1yqf_A 155 DYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWA 186 (203)
T ss_dssp BHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45566778888888888888888887766543
No 16
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=22.51 E-value=38 Score=15.44 Aligned_cols=20 Identities=25% Similarity=0.597 Sum_probs=15.5
Q ss_pred HHHHhhhhhHHHHHHHHHHH
Q psy18061 14 CEEYVQQHNVQQMLKDCIVQ 33 (60)
Q Consensus 14 ~~~Y~~~h~i~~LL~~~~~~ 33 (60)
+--|.+.|.-++||...+..
T Consensus 4 vmcyaqrhsspellrrcldn 23 (26)
T 2plx_B 4 VMCYAQRHSSPELLRRCLDN 23 (26)
T ss_dssp HHHHHBCCCCHHHHHHHHHH
T ss_pred EEeehhhcCCHHHHHHHHhc
Confidence 44688999999999877644
No 17
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=22.50 E-value=46 Score=20.89 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhC
Q psy18061 7 EEQSLRECEEYVQQHNVQQMLKDCIVQLCVTK 38 (60)
Q Consensus 7 ~~~~~~e~~~Y~~~h~i~~LL~~~~~~ll~~r 38 (60)
++.-+..+..|++..||.+=|-+++......+
T Consensus 134 De~Lq~~l~~yLeeRGI~~~la~fl~~y~~~K 165 (182)
T 3jv1_A 134 EDHLVDSFTSYLSARGVNDTLANFIDQFSLWS 165 (182)
T ss_dssp CHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45567788999999999998888887776654
No 18
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=21.72 E-value=1.2e+02 Score=17.13 Aligned_cols=18 Identities=11% Similarity=0.427 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhCCC
Q psy18061 23 VQQMLKDCIVQLCVTKPD 40 (60)
Q Consensus 23 i~~LL~~~~~~ll~~rPe 40 (60)
+.+-+.++++.+..+.|.
T Consensus 40 LEdYID~LLvRVME~~P~ 57 (75)
T 3tso_C 40 LEDYIDNLLVRVMEETPS 57 (75)
T ss_dssp HHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHhCcH
Confidence 333445788888777774
No 19
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=21.72 E-value=38 Score=19.53 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=14.6
Q ss_pred HhhhhhHHHHHHHHHHH
Q psy18061 17 YVQQHNVQQMLKDCIVQ 33 (60)
Q Consensus 17 Y~~~h~i~~LL~~~~~~ 33 (60)
|.-||+|.++|+++...
T Consensus 49 yesp~Rl~~~l~~L~~~ 65 (115)
T 3ffy_A 49 YESPHRLLKTLTQFAEY 65 (115)
T ss_dssp EECTTTHHHHHHHHHHH
T ss_pred EechHHHHHHHHHHHHh
Confidence 66789999999999874
No 20
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=20.19 E-value=1.2e+02 Score=18.24 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhCCC
Q psy18061 27 LKDCIVQLCVTKPD 40 (60)
Q Consensus 27 L~~~~~~ll~~rPe 40 (60)
+.++++.+..+.|+
T Consensus 76 ID~LLvRVME~tP~ 89 (107)
T 2gzd_C 76 IDNLLVRVMEETPS 89 (107)
T ss_dssp HHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhCch
Confidence 34777777777774
Done!