RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18061
(60 letters)
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit;
structural genomics, PSI-biology; 2.80A {Homo sapiens}
PDB: 2ezw_A 3im3_A 3im4_A
Length = 95
Score = 82.1 bits (202), Expect = 6e-23
Identities = 30/50 (60%), Positives = 42/50 (84%)
Query: 6 EEEQSLRECEEYVQQHNVQQMLKDCIVQLCVTKPDNPISFLREYFQKLER 55
E++SL+ CE YVQ H +QQ+LKDCIV LC++KP+ P+ FLRE+F+KLE+
Sbjct: 32 MEDESLKGCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEK 81
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit,
CAMP-dependent protein kinase catalytic subunit A;
isoform diversity; HET: TPO SEP ATP; 3.70A {Homo
sapiens}
Length = 381
Score = 64.7 bits (157), Expect = 1e-14
Identities = 32/55 (58%), Positives = 44/55 (80%)
Query: 1 MASNLEEEQSLRECEEYVQQHNVQQMLKDCIVQLCVTKPDNPISFLREYFQKLER 55
A EE++SL+ CE YVQ H +QQ+LKDCIV LC++KP+ P+ FLRE+F+KLE+
Sbjct: 5 PACPSEEDESLKGCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEK 59
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA
RIIB tetrameric holoenzyme, transferase; HET: SEP TPO;
2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Length = 416
Score = 45.5 bits (107), Expect = 8e-08
Identities = 6/33 (18%), Positives = 20/33 (60%)
Query: 23 VQQMLKDCIVQLCVTKPDNPISFLREYFQKLER 55
+ ++L+ V++ +P + + F ++F +L++
Sbjct: 9 LTELLQGFTVEVLRHQPADLLEFALQHFTRLQQ 41
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.003
Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 2 ASNLEEEQSLRECEEYVQQHNVQQMLKDCIVQLCVTKPDNPISFLREYFQKLERFP 57
A ++ + + + ++V + +++ + L +P R+ F +L FP
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVL---EPAE----YRKMFDRLSVFP 382
Score = 29.4 bits (65), Expect = 0.048
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 1 MASNLEEE--QSLRECEEYVQQHNVQQMLKDCIVQLCVTKPDNPISFLREYFQKLER 55
+ S ++ E Q Y++Q + + V++ P LR+ +L
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRP 149
Score = 27.9 bits (61), Expect = 0.17
Identities = 5/51 (9%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 8 EQSLRECEEYVQQHNVQQMLKD---CIVQLCVTKPDNPISFLREYFQKLER 55
E+ + +++ + + ++ ++++ + D I E ++++R
Sbjct: 542 ERLVNAILDFLPKIE-ENLICSKYTDLLRIALMAEDEAI--FEEAHKQVQR 589
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus,
nuclear protein; 1.20A {Homo sapiens}
Length = 55
Score = 28.5 bits (64), Expect = 0.029
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 16 EYVQQHNVQQMLKDCIVQLCVTKPDNPISFLREY 49
Y+ Q V +L + L +P NPI FL Y
Sbjct: 11 AYLDQT-VVPILLQGMAVLAKERPPNPIEFLASY 43
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit;
CAMP-binding, phosphorylation, nucleotide-binding, PKA,
CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens}
PDB: 2hwn_A
Length = 41
Score = 24.7 bits (54), Expect = 0.64
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 21 HNVQQMLKDCIVQLCVTKPDNPISFLREYFQKL 53
+ ++L+ V++ +P + + F EYF +L
Sbjct: 5 PGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRL 37
>2dix_A Interferon-inducible double stranded RNA- dependent protein
kinase activator A; structure genomics, DSRM domain,
hypothetical protein PRKRA; NMR {Homo sapiens} SCOP:
d.50.1.1
Length = 84
Score = 25.4 bits (56), Expect = 0.67
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 41 NPISFLREYFQKLERFPIF 59
PI L EY K + P++
Sbjct: 9 TPIQVLHEYGMKTKNIPVY 27
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit;
protein/protein, homodimer bound to monomer, protein
binding; NMR {Homo sapiens}
Length = 50
Score = 24.8 bits (54), Expect = 0.69
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 21 HNVQQMLKDCIVQLCVTKPDNPISFLREYFQKL 53
+ ++L+ V++ +P + + F EYF +L
Sbjct: 13 PGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRL 45
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 1.1
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 17/37 (45%)
Query: 7 EEQSLRECEEYVQQHNVQQMLKDCIVQLCVTKPDN-P 42
E+Q+L++ +Q LK + D+ P
Sbjct: 18 EKQALKK---------LQASLK-------LYADDSAP 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 2.0
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 11 LRECEEYVQQHNVQQMLKDCIVQLCV 36
LR ++ + + DCI++L V
Sbjct: 468 LRVLSG-----SISERIVDCIIRLPV 488
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII,
PKA, acetylation, transferase, CAMP- binding,
phosphorylation, nucleotide-binding; 2.2A {Mus
musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A
2h9r_A
Length = 54
Score = 23.7 bits (51), Expect = 2.1
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 21 HNVQQMLKDCIVQLCVTKPDNPISFLREYFQKL 53
+ ++L+ V++ +P + + F EYF +L
Sbjct: 8 PGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRL 40
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 23.5 bits (50), Expect = 5.5
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 3 SNLEEEQSLRECEEYVQQHNVQQMLKDCIVQLCVT 37
+L E SL EC + N++Q L+ C VQ+
Sbjct: 656 GSLSVEDSL-ECLRAMLSANIRQNLQIC-VQVASK 688
>3piw_A Type I interferon 2; zebrafish, interleukin, cytokine; 1.49A {Danio
rerio}
Length = 161
Score = 23.3 bits (50), Expect = 6.6
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 19 QQHNVQQMLKDCIVQLCVTKPDNPISFLREYFQKLERF 56
+ + + Q V L+ YF KL
Sbjct: 94 RLTKENKCIMRMRAQGTVDDFPARDDALKSYFNKLATL 131
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure,
protein/RNA, protein DSRBD, RNA hairpin; NMR
{Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Length = 76
Score = 22.7 bits (49), Expect = 8.0
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 37 TKPDNPISFLREYFQKLERFPIF 59
+PIS + E K F
Sbjct: 4 GDKKSPISQVHEIGIKRNMTVHF 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.396
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 887,439
Number of extensions: 35841
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 25
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)