RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18061
         (60 letters)



>d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type
          I-alpha regulatory subunit {Cow (Bos taurus) [TaxId:
          9913]}
          Length = 50

 Score = 78.7 bits (194), Expect = 1e-22
 Identities = 31/46 (67%), Positives = 40/46 (86%)

Query: 10 SLRECEEYVQQHNVQQMLKDCIVQLCVTKPDNPISFLREYFQKLER 55
          SLRECE YVQ+HN+Q +LKD IVQLC  +P+ P++FLREYF+KLE+
Sbjct: 1  SLRECELYVQKHNIQALLKDSIVQLCTARPERPMAFLREYFEKLEK 46


>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II
          regulatory subunit {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 39

 Score = 24.2 bits (53), Expect = 0.33
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 25 QMLKDCIVQLCVTKPDNPISFLREYFQKL 53
          ++L+   V++   +P + + F  EYF +L
Sbjct: 7  ELLQGYTVEVLRQQPPDLVDFAVEYFTRL 35


>d1b3ta_ d.58.8.1 (A:) Epstein barr virus nuclear antigen-1 (ebna1)
           {Epstein-Barr virus [TaxId: 10376]}
          Length = 147

 Score = 24.1 bits (52), Expect = 1.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 17  YVQQHNVQQMLKDCIVQLCVTKP 39
           ++Q H   ++LKD I  L +TKP
Sbjct: 105 FLQTHIFAEVLKDAIKDLVMTKP 127


>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 113

 Score = 23.8 bits (51), Expect = 1.3
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 40 DNPISFLREYFQKLERFPIF 59
          +N  + L +YFQK +    +
Sbjct: 26 ENAKARLNQYFQKEKIQGEY 45


>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded
          RNA-dependent protein kinase activator A {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 73

 Score = 23.1 bits (49), Expect = 1.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 41 NPISFLREYFQKLERFPIF 59
           PI  L EY  K +  P++
Sbjct: 3  TPIQVLHEYGMKTKNIPVY 21


>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 269

 Score = 23.3 bits (50), Expect = 2.5
 Identities = 5/31 (16%), Positives = 13/31 (41%)

Query: 8   EQSLRECEEYVQQHNVQQMLKDCIVQLCVTK 38
           EQ+L   +  ++   +  ++ D +  L    
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRA 154


>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 89

 Score = 21.4 bits (44), Expect = 8.9
 Identities = 5/12 (41%), Positives = 6/12 (50%)

Query: 41 NPISFLREYFQK 52
           PIS L +  Q 
Sbjct: 7  GPISRLAQIQQA 18


>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 71

 Score = 21.3 bits (45), Expect = 8.9
 Identities = 5/17 (29%), Positives = 7/17 (41%)

Query: 38 KPDNPISFLREYFQKLE 54
             NP+  L E    L+
Sbjct: 2  SGKNPVMILNELRPGLK 18


>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory
          sulfite reductase {Archaeon Pyrobaculum aerophilum
          [TaxId: 13773]}
          Length = 111

 Score = 21.2 bits (45), Expect = 9.2
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 43 ISFLREYFQKLERFP 57
          + +LREY++     P
Sbjct: 56 VKYLREYWETFGTCP 70


>d1t3ta1 a.5.10.1 (A:153-220) FGAM synthase PurL, linker domain
          {Salmonella typhimurium [TaxId: 90371]}
          Length = 68

 Score = 20.8 bits (44), Expect = 9.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 43 ISFLREYFQKLERFP 57
          I +L+E F KL R P
Sbjct: 35 IDYLQEAFTKLGRNP 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 225,169
Number of extensions: 7833
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 20
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)