BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18065
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL--NSKEFSVNLY 59
A C QL GV A+FGPS + VQSIC AL VPH+++R ++ N F V+LY
Sbjct: 60 ASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLY 119
Query: 60 PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH--ANPST 117
P L+ A D+++F W V +VY++ GL +LQEL+K P + IR A+
Sbjct: 120 PDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKD 179
Query: 118 YRNVLREIRQKEIFNLIIDTS 138
+ +L+E+++ + F++I D S
Sbjct: 180 AKPLLKEMKRGKEFHVIFDCS 200
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL--NSKEFSVNLY 59
A C QL GV A+FGPS + VQSIC AL VPH+++R ++ N F V+LY
Sbjct: 60 ASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLY 119
Query: 60 PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH--ANPST 117
P L+ A D+++F W V +VY++ GL +LQEL+K P + IR A+
Sbjct: 120 PDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKD 179
Query: 118 YRNVLREIRQKEIFNLIIDTS 138
+ +L+E+++ + F++I D S
Sbjct: 180 AKPLLKEMKRGKEFHVIFDCS 200
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 79/153 (51%), Gaps = 10/153 (6%)
Query: 2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESR-----LDLELNSKEFSV 56
A C QL GV A+FGPS VQSIC AL+VPH++ R LD N F V
Sbjct: 63 ATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLD---NKDTFYV 119
Query: 57 NLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH--AN 114
NLYP L+ A D+++ L W +VY++ GL +LQEL+ P + IR +
Sbjct: 120 NLYPDYASLSHAILDLVQSLKWRSATVVYDDSTGLIRLQELIMAPSRYNIRLKIRQLPID 179
Query: 115 PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFR 147
R +L+E+++ F +I D S T +Q +
Sbjct: 180 SDDSRPLLKEMKRGREFRIIFDCSHTMAAQILK 212
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 11/140 (7%)
Query: 4 ATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQK 63
A C Q GV A+FG D + S C L V + + + F + + P
Sbjct: 54 AAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD-- 110
Query: 64 LLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHAN----PS 116
L A +I + W K A +Y+ D GL LQ ++ + K T + + + N
Sbjct: 111 -LKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDE 169
Query: 117 TYRNVLREIRQKEIFNLIID 136
TYR++ +++ K+ +I+D
Sbjct: 170 TYRSLFQDLELKKERRVILD 189
>pdb|3OM0|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Crystallographic
Dimer At 1.4 Angstrom Resolution
pdb|3OM1|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3OM1|B Chain B, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3QLU|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLV|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|E Chain E, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|G Chain G, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|I Chain I, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 393
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Query: 5 TMCRQLQNGVQALFGPSDALLGPH-VQSICEALDVPHMESRLD--LELNSKEF-SVNLYP 60
TMC+ L GV ++ GPS + V IC ++PH++ + L F SV+LYP
Sbjct: 62 TMCQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPRLQYLRFASVSLYP 121
Query: 61 SQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVK----TPPTLKTEMYIRHANPS 116
S + ++ A +++ N+ +++ + L +L+ELV+ + TL M +P+
Sbjct: 122 SNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELVRGFLISKETLSVRMLDDSRDPT 181
Query: 117 TYRNVLREIRQKEIFNLIIDTSTT 140
+L+EIR ++ +IID + +
Sbjct: 182 P---LLKEIRDDKVSTIIIDANAS 202
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 6 MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
C Q GV A+FG D + S C L V + + + F + + P L
Sbjct: 53 FCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD---L 108
Query: 66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHAN----PSTY 118
A +I + W K A +Y+ D GL LQ ++ + K T + + + N TY
Sbjct: 109 KGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 168
Query: 119 RNVLREIRQKEIFNLIID 136
R++ +++ K+ +I+D
Sbjct: 169 RSLFQDLELKKERRVILD 186
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 6 MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
C Q GV A+FG D + S C L V + + + F + + P L
Sbjct: 51 FCSQFSRGVYAIFGFYDKKSVNAITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD---L 106
Query: 66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHAN----PSTY 118
A +I + W K A +Y+ D GL LQ ++ + K T + + + N TY
Sbjct: 107 KGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 166
Query: 119 RNVLREIRQKEIFNLIID 136
R++ +++ K+ +I+D
Sbjct: 167 RSLFQDLELKKERRVILD 184
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 6 MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
C Q GV A+FG D + S C L V + + + F + + P L
Sbjct: 53 FCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD---L 108
Query: 66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHAN----PSTY 118
A +I + W K A +Y+ D GL LQ ++ + K T + + + N TY
Sbjct: 109 KGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 168
Query: 119 RNVLREIRQKEIFNLIID 136
R++ +++ K+ +I+D
Sbjct: 169 RSLFQDLELKKERRVILD 186
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 6 MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
C Q GV A+FG D + S C L V + + + F + + P L
Sbjct: 61 FCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD---L 116
Query: 66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHAN----PSTY 118
A +I + W K A +Y+ D GL LQ ++ + K T + + + N TY
Sbjct: 117 KGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 176
Query: 119 RNVLREIRQKEIFNLIID 136
R++ +++ K+ +I+D
Sbjct: 177 RSLFQDLELKKERRVILD 194
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 11/138 (7%)
Query: 6 MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
C Q GV A+FG D + S C L V + + + F + + P L
Sbjct: 53 FCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD---L 108
Query: 66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHAN----PSTY 118
A +I + W K A +Y+ D GL LQ ++ + K T + + + N Y
Sbjct: 109 KGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDEMY 168
Query: 119 RNVLREIRQKEIFNLIID 136
R++ +++ K+ +I+D
Sbjct: 169 RSLFQDLELKKERRVILD 186
>pdb|4GPA|A Chain A, High Resolution Structure Of The Glua4 N-Terminal Domain
(Ntd)
Length = 389
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 6 MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
C Q GV A+FG D + S C AL + + E S +F + L PS L
Sbjct: 62 FCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGES-QFVLQLRPS---L 117
Query: 66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHANPSTYRNVL 122
A ++ W +Y+ D G LQ +++ + + + + N +YR +L
Sbjct: 118 RGALLSLLDHYEWNCFVFLYDTDRGYSILQAIMEKAGQNGWHVSAICVENFNDVSYRQLL 177
Query: 123 REIRQKEIFNLIID 136
E+ +++ +ID
Sbjct: 178 EELDRRQEKKFVID 191
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 7/141 (4%)
Query: 6 MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
C Q GV A+FG + + S C AL V + ++ S +F + L P L
Sbjct: 60 FCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVD-TSNQFVLQLRPE---L 115
Query: 66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHANPSTYRNVL 122
A +I W +Y+ D GL LQ ++ T T + I YR +
Sbjct: 116 QEALISIIDHYKWQTFVYIYDADRGLSVLQRVLDTAAEKNWQVTAVNILTTTEEGYRMLF 175
Query: 123 REIRQKEIFNLIIDTSTTHIS 143
+++ +K+ +++D + ++
Sbjct: 176 QDLEKKKERLVVVDCESERLN 196
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 14 VQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSK---EFSVNLYPSQKLLNAAF 69
+ + GP + + VQ++ + D+P + S ++L+ K ++ + + PS L A
Sbjct: 124 IAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAM 183
Query: 70 KDVIRFLNWTKVAIVYEEDN----GLFKLQELV 98
D+++ NWT V+ V+ E N G+ +EL
Sbjct: 184 LDIVKRYNWTYVSAVHTEGNYGESGMDAFKELA 216
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 14 VQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSK---EFSVNLYPSQKLLNAAF 69
+ + GP + + VQ++ + D+P + S ++L+ K ++ + + PS L A
Sbjct: 129 IAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAM 188
Query: 70 KDVIRFLNWTKVAIVYEEDN----GLFKLQELV 98
D+++ NWT V+ V+ E N G+ +EL
Sbjct: 189 LDIVKRYNWTYVSAVHTEGNYGESGMDAFKELA 221
>pdb|3O21|A Chain A, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|B Chain B, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|C Chain C, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|D Chain D, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3P3W|A Chain A, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|B Chain B, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|C Chain C, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|D Chain D, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
Length = 389
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 60/148 (40%), Gaps = 8/148 (5%)
Query: 6 MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
C Q GV A+FG D + + S C AL + + + +F + + P+ L
Sbjct: 62 FCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFPTDADV-QFVIQMRPA---L 117
Query: 66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHA----NPSTYRNV 121
A ++ + W K +Y+ + G LQ +++ ++ R + +R +
Sbjct: 118 KGAILSLLSYYKWEKFVYLYDTERGFSVLQAIMEAAVQNNWQVTARSVGNIKDVQEFRRI 177
Query: 122 LREIRQKEIFNLIIDTSTTHISQFFRAV 149
+ E+ +++ +ID I+ V
Sbjct: 178 IEEMDRRQEKRYLIDCEVERINTILEQV 205
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 14 VQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSK---EFSVNLYPSQKLLNAAF 69
+ + GP + + VQ++ + ++P + S ++L+ K ++ + + PS A
Sbjct: 130 IVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSMDLSDKTLFKYFMRVVPSDAQQARAM 189
Query: 70 KDVIRFLNWTKVAIVYEEDN 89
D+++ NWT V+ V+ E N
Sbjct: 190 VDIVKRYNWTYVSAVHTEGN 209
>pdb|3MEJ|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
Ywtf Bacillus Subtilis, Northeast Structural Genomics
Consortium Sr736
Length = 286
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 68 AFKDVIRFLNWTKVAI--------VYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYR 119
AF+DV+ LN KV + + ++ G LQ+ T + Y+R +
Sbjct: 122 AFEDVVNELNGVKVTVKSDKVIQQIKKDTKGKVVLQKGTHTLDGEEALAYVRTRKADS-- 179
Query: 120 NVLREIRQKEIFNLIIDTSTT 140
++LR RQ E+ + IID S +
Sbjct: 180 DLLRGQRQXEVLSAIIDKSKS 200
>pdb|4DE9|A Chain A, Lytr-Cps2a-Psr Family Protein Ywtf (Tagt) With Bound
Octaprenyl Pyrophosphate Lipid
Length = 286
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 68 AFKDVIRFLNWTKVAI--------VYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYR 119
AF+DV+ LN KV + + ++ G LQ+ T + Y+R +
Sbjct: 122 AFEDVVNELNGVKVTVKSDKVIQQIKKDTKGKVVLQKGTHTLDGEEALAYVRTRKADS-- 179
Query: 120 NVLREIRQKEIFNLIIDTSTT 140
++LR RQ E+ + IID S +
Sbjct: 180 DLLRGQRQMEVLSAIIDKSKS 200
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 68 AFKDVIRFLNWTKVAIVYEE-DNG-----LFKLQELVKTPPTLKTEMYIRHANPSTYRNV 121
A +++RF NWT V+ V E D G F+ + ++ E R +Y +V
Sbjct: 175 AMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSV 234
Query: 122 LREIRQK 128
+RE+ QK
Sbjct: 235 IRELLQK 241
>pdb|3UC9|A Chain A, Crystal Structure Of Yeast Irc6p - A Novel Type Of
Conserved Clathrin Accessory Protein
Length = 233
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 63 KLLNAAFKDVIRFLNWTKVAIV-----YEEDNGLFKLQELVKTPPTLKTEM 108
++ + AF +VI F+NW + Y E GL ++QE++ T L E+
Sbjct: 153 EIWSNAFTNVIEFVNWKRSKPTVNHNDYGEKLGLDRIQEIIDTHDWLNCEV 203
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 68 AFKDVIRFLNWTKVAIVYEE-DNG-----LFKLQELVKTPPTLKTEMYIRHANPSTYRNV 121
A +++RF NWT V+ V E D G F+ + ++ E R +Y +V
Sbjct: 176 AMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSV 235
Query: 122 LREIRQK 128
+RE+ QK
Sbjct: 236 IRELLQK 242
>pdb|3PTR|B Chain B, Phf2 Jumonji Domain
pdb|3PU3|A Chain A, Phf2 Jumonji Domain-Nog Complex
pdb|3PU3|B Chain B, Phf2 Jumonji Domain-Nog Complex
pdb|3PU8|B Chain B, Phf2 Jumonji-Nog-Fe(Ii) Complex
pdb|3PU8|A Chain A, Phf2 Jumonji-Nog-Fe(Ii) Complex
pdb|3PUA|A Chain A, Phf2 Jumonji-Nog-Ni(Ii)
pdb|3PUS|A Chain A, Phf2 Jumonji-Nog-Ni(Ii)
pdb|3PUS|B Chain B, Phf2 Jumonji-Nog-Ni(Ii)
Length = 392
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 27 PHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE 86
P+ ++ C + +E+ + K+ +L K+LN AF+ +WTK + E
Sbjct: 305 PNFETACWYMGKHLLEAFKGSHKSGKQLPPHLVQGAKILNGAFR------SWTKKQALAE 358
Query: 87 EDNGL---FKLQELVK 99
++ L FK +L+K
Sbjct: 359 HEDELPEHFKPSQLIK 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,068,643
Number of Sequences: 62578
Number of extensions: 148105
Number of successful extensions: 483
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 24
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)