Query psy18065
Match_columns 149
No_of_seqs 113 out of 1031
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 21:45:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h6g_A Glutamate receptor, ion 99.9 2.1E-26 7.3E-31 173.0 13.7 148 2-149 60-211 (395)
2 4gpa_A Glutamate receptor 4; P 99.9 2.1E-26 7.1E-31 171.9 13.0 144 2-149 58-204 (389)
3 3o21_A Glutamate receptor 3; p 99.9 4.8E-26 1.7E-30 171.3 12.8 144 2-149 58-205 (389)
4 3qel_B Glutamate [NMDA] recept 99.9 6.5E-26 2.2E-30 169.5 12.9 148 2-149 51-214 (364)
5 3hsy_A Glutamate receptor 2; l 99.9 3.2E-26 1.1E-30 171.4 10.5 144 2-149 49-199 (376)
6 3om0_A Glutamate receptor, ion 99.9 2E-25 7E-30 167.6 10.8 148 2-149 59-211 (393)
7 3sm9_A Mglur3, metabotropic gl 99.9 2.7E-25 9.3E-30 171.4 11.5 138 12-149 115-263 (479)
8 3qek_A NMDA glutamate receptor 99.9 9.9E-25 3.4E-29 163.4 13.7 148 2-149 53-235 (384)
9 1jdp_A NPR-C, atrial natriuret 99.9 9.6E-25 3.3E-29 166.1 11.1 145 4-149 75-231 (441)
10 3ks9_A Mglur1, metabotropic gl 99.9 1.2E-24 4.3E-29 168.3 10.7 140 10-149 125-276 (496)
11 2e4u_A Metabotropic glutamate 99.9 4.8E-24 1.7E-28 166.9 14.0 139 11-149 115-264 (555)
12 3saj_A Glutamate receptor 1; r 99.9 4E-25 1.4E-29 165.7 6.6 144 2-149 56-202 (384)
13 3kg2_A Glutamate receptor 2; I 99.9 3E-24 1E-28 174.0 11.8 144 2-149 49-199 (823)
14 4f11_A Gamma-aminobutyric acid 99.9 5.1E-24 1.8E-28 161.7 12.4 148 2-149 72-226 (433)
15 3mq4_A Mglur7, metabotropic gl 99.9 2.2E-24 7.6E-29 166.3 7.9 138 12-149 116-267 (481)
16 1dp4_A Atrial natriuretic pept 99.9 4.9E-23 1.7E-27 156.2 9.7 145 3-149 66-226 (435)
17 3h5l_A Putative branched-chain 99.8 2.3E-19 7.9E-24 135.6 11.9 148 2-149 71-240 (419)
18 3i45_A Twin-arginine transloca 99.8 2.1E-19 7.2E-24 134.4 10.4 147 3-149 62-219 (387)
19 3i09_A Periplasmic branched-ch 99.8 2E-18 6.8E-23 128.5 11.6 147 3-149 60-215 (375)
20 3n0w_A ABC branched chain amin 99.8 1.2E-18 4E-23 130.1 9.9 147 3-149 62-217 (379)
21 4eyg_A Twin-arginine transloca 99.8 3.5E-18 1.2E-22 126.6 10.6 147 3-149 61-214 (368)
22 3td9_A Branched chain amino ac 99.8 5.8E-18 2E-22 125.6 11.3 147 3-149 70-224 (366)
23 3ipc_A ABC transporter, substr 99.7 7.7E-18 2.6E-22 124.4 10.2 147 3-149 59-213 (356)
24 4f06_A Extracellular ligand-bi 99.7 1.2E-17 4E-22 124.6 10.1 143 6-148 64-214 (371)
25 3lop_A Substrate binding perip 99.7 1.5E-17 5.1E-22 123.4 9.6 146 3-149 62-216 (364)
26 3eaf_A ABC transporter, substr 99.7 2.8E-17 9.7E-22 123.1 10.7 146 3-149 65-219 (391)
27 3sg0_A Extracellular ligand-bi 99.7 8.9E-17 3E-21 119.6 10.7 146 3-148 78-233 (386)
28 3snr_A Extracellular ligand-bi 99.7 1.2E-16 4.2E-21 117.7 11.0 145 4-148 59-209 (362)
29 3hut_A Putative branched-chain 99.7 1.3E-16 4.4E-21 117.9 10.9 147 3-149 61-214 (358)
30 4evq_A Putative ABC transporte 99.7 7.1E-17 2.4E-21 119.9 9.5 146 4-149 72-226 (375)
31 1usg_A Leucine-specific bindin 99.7 2.1E-16 7.2E-21 116.1 10.9 145 4-148 60-212 (346)
32 3lkb_A Probable branched-chain 99.7 1.2E-16 4E-21 119.6 9.4 146 3-149 64-218 (392)
33 3n0x_A Possible substrate bind 99.7 2E-16 6.7E-21 117.9 10.3 135 2-137 61-209 (374)
34 4gnr_A ABC transporter substra 99.6 2.8E-14 9.6E-19 105.3 12.7 144 3-149 64-216 (353)
35 1pea_A Amidase operon; gene re 99.6 1.8E-14 6.1E-19 107.6 10.6 145 4-148 65-216 (385)
36 2h4a_A YRAM (HI1655); perplasm 99.4 3.2E-13 1.1E-17 99.5 8.2 140 6-148 49-194 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 99.4 2.3E-12 7.9E-17 94.5 8.9 141 9-149 54-197 (327)
38 2h3h_A Sugar ABC transporter, 97.0 0.045 1.5E-06 39.1 14.0 136 8-146 52-198 (313)
39 3rot_A ABC sugar transporter, 96.7 0.042 1.4E-06 38.9 11.6 121 8-128 56-185 (297)
40 3o74_A Fructose transport syst 96.6 0.071 2.4E-06 36.9 12.3 98 9-110 54-155 (272)
41 3ksm_A ABC-type sugar transpor 96.0 0.19 6.3E-06 34.8 11.6 100 8-109 53-162 (276)
42 2fn9_A Ribose ABC transporter, 95.9 0.24 8.3E-06 34.6 12.0 137 8-146 53-207 (290)
43 1dbq_A Purine repressor; trans 95.8 0.12 4.1E-06 36.1 10.0 98 8-107 58-158 (289)
44 3c3k_A Alanine racemase; struc 95.6 0.3 1E-05 34.2 11.4 132 9-146 60-200 (285)
45 3brq_A HTH-type transcriptiona 95.6 0.11 3.9E-06 36.3 9.2 97 8-107 72-171 (296)
46 3g1w_A Sugar ABC transporter; 95.4 0.2 6.8E-06 35.3 10.0 99 8-108 56-159 (305)
47 2iks_A DNA-binding transcripti 95.4 0.45 1.5E-05 33.4 11.9 97 8-107 71-170 (293)
48 3dbi_A Sugar-binding transcrip 95.3 0.18 6.2E-06 36.3 9.6 96 9-107 115-213 (338)
49 3gbv_A Putative LACI-family tr 95.3 0.21 7.2E-06 35.1 9.7 127 9-137 65-208 (304)
50 2x7x_A Sensor protein; transfe 95.2 0.55 1.9E-05 33.6 11.9 99 8-108 57-162 (325)
51 3hcw_A Maltose operon transcri 95.1 0.55 1.9E-05 33.0 11.5 99 10-110 65-166 (295)
52 1tjy_A Sugar transport protein 95.0 0.48 1.6E-05 33.8 11.1 93 8-101 55-154 (316)
53 3l6u_A ABC-type sugar transpor 94.9 0.6 2E-05 32.6 11.5 119 8-128 59-192 (293)
54 3e61_A Putative transcriptiona 94.8 0.4 1.4E-05 33.2 9.9 94 9-109 60-156 (277)
55 2qu7_A Putative transcriptiona 94.8 0.09 3.1E-06 36.9 6.5 94 8-107 58-154 (288)
56 3brs_A Periplasmic binding pro 94.7 0.7 2.4E-05 32.1 11.8 98 8-107 60-163 (289)
57 3jy6_A Transcriptional regulat 94.6 0.73 2.5E-05 31.9 12.3 92 9-105 59-154 (276)
58 2qh8_A Uncharacterized protein 94.4 0.36 1.2E-05 34.2 9.0 123 8-136 64-200 (302)
59 3qk7_A Transcriptional regulat 94.4 0.88 3E-05 31.9 12.5 93 11-107 63-158 (294)
60 3k9c_A Transcriptional regulat 94.4 0.48 1.6E-05 33.2 9.5 95 8-107 61-157 (289)
61 2h0a_A TTHA0807, transcription 94.3 0.33 1.1E-05 33.6 8.6 93 9-107 51-151 (276)
62 3l49_A ABC sugar (ribose) tran 94.3 0.42 1.5E-05 33.3 9.2 96 8-107 56-158 (291)
63 3tb6_A Arabinose metabolism tr 94.3 0.66 2.3E-05 32.3 10.2 96 9-107 67-168 (298)
64 2fep_A Catabolite control prot 94.3 0.66 2.2E-05 32.5 10.1 96 8-107 67-166 (289)
65 2o20_A Catabolite control prot 94.2 0.66 2.3E-05 33.2 10.3 95 9-107 115-212 (332)
66 3gyb_A Transcriptional regulat 94.1 0.17 5.9E-06 35.2 6.7 93 9-109 56-150 (280)
67 2rjo_A Twin-arginine transloca 94.0 1.1 3.9E-05 31.9 12.2 102 8-109 56-171 (332)
68 2rgy_A Transcriptional regulat 93.9 1.1 3.7E-05 31.4 12.0 95 8-106 62-159 (290)
69 3o1i_D Periplasmic protein TOR 93.9 1.1 3.8E-05 31.3 11.6 135 8-146 58-209 (304)
70 3egc_A Putative ribose operon 93.9 0.64 2.2E-05 32.5 9.4 95 9-107 60-157 (291)
71 3d8u_A PURR transcriptional re 93.8 0.77 2.6E-05 31.7 9.6 95 9-107 55-152 (275)
72 3bbl_A Regulatory protein of L 93.8 1.2 3.9E-05 31.1 11.6 96 8-107 59-157 (287)
73 3kke_A LACI family transcripti 93.6 0.83 2.8E-05 32.2 9.7 93 9-107 67-163 (303)
74 1qpz_A PURA, protein (purine n 93.6 0.88 3E-05 32.7 9.9 97 9-107 110-209 (340)
75 2hsg_A Glucose-resistance amyl 93.5 1.4 4.7E-05 31.5 10.8 95 9-107 112-210 (332)
76 3lft_A Uncharacterized protein 93.5 0.76 2.6E-05 32.4 9.2 123 8-136 57-193 (295)
77 3gv0_A Transcriptional regulat 93.4 0.59 2E-05 32.7 8.5 131 11-146 64-204 (288)
78 3clk_A Transcription regulator 93.2 0.27 9.3E-06 34.4 6.4 94 9-107 61-157 (290)
79 4fe7_A Xylose operon regulator 93.2 1.9 6.7E-05 31.9 11.8 97 10-109 73-175 (412)
80 3d02_A Putative LACI-type tran 93.0 1 3.4E-05 31.5 9.3 93 8-102 56-154 (303)
81 2fvy_A D-galactose-binding per 92.9 1.7 5.7E-05 30.4 12.2 101 8-108 54-173 (309)
82 3k4h_A Putative transcriptiona 92.5 1.7 6E-05 30.1 10.0 94 11-107 67-163 (292)
83 2ioy_A Periplasmic sugar-bindi 92.5 1.8 6.3E-05 30.0 12.8 98 8-108 52-157 (283)
84 3cs3_A Sugar-binding transcrip 92.5 1.8 6.2E-05 29.9 10.8 112 13-128 57-173 (277)
85 3bil_A Probable LACI-family tr 92.1 1.6 5.4E-05 31.5 9.5 94 9-106 118-215 (348)
86 2vk2_A YTFQ, ABC transporter p 92.1 2.2 7.6E-05 29.9 13.8 97 9-106 54-159 (306)
87 2rbg_A Putative uncharacterize 91.6 1.5 5E-05 26.9 8.8 76 67-142 22-99 (126)
88 3h5o_A Transcriptional regulat 91.1 2.9 0.0001 29.9 10.0 92 9-106 114-208 (339)
89 3m9w_A D-xylose-binding peripl 90.9 3.1 0.0001 29.3 10.6 94 8-103 53-151 (313)
90 3g85_A Transcriptional regulat 90.6 1.5 5.1E-05 30.5 7.8 91 11-107 66-159 (289)
91 3h75_A Periplasmic sugar-bindi 90.0 4 0.00014 29.3 11.6 99 8-106 55-176 (350)
92 3hs3_A Ribose operon repressor 89.4 1.3 4.3E-05 30.8 6.6 108 9-128 63-175 (277)
93 3sr0_A Adenylate kinase; phosp 88.5 0.25 8.5E-06 33.6 2.3 66 14-79 2-103 (206)
94 3jvd_A Transcriptional regulat 88.4 5.4 0.00018 28.5 9.7 124 10-145 116-246 (333)
95 3kjx_A Transcriptional regulat 87.8 3.6 0.00012 29.4 8.3 95 9-107 120-218 (344)
96 3huu_A Transcription regulator 87.7 3.3 0.00011 29.0 8.0 94 10-107 80-176 (305)
97 3umf_A Adenylate kinase; rossm 87.5 0.24 8.2E-06 34.0 1.8 32 13-44 30-61 (217)
98 1byk_A Protein (trehalose oper 86.9 4.3 0.00015 27.5 8.0 90 9-107 54-148 (255)
99 3ctp_A Periplasmic binding pro 86.6 1.7 5.9E-05 31.0 6.0 92 8-108 111-205 (330)
100 1jye_A Lactose operon represso 86.3 7.4 0.00025 27.9 9.7 93 9-107 114-211 (349)
101 3h5t_A Transcriptional regulat 85.5 8.3 0.00028 27.8 9.6 72 10-85 125-196 (366)
102 1jx6_A LUXP protein; protein-l 85.4 8 0.00027 27.5 10.1 98 8-106 99-205 (342)
103 3e3m_A Transcriptional regulat 85.2 8.5 0.00029 27.6 11.2 95 9-107 122-220 (355)
104 3ixl_A Amdase, arylmalonate de 84.1 2.4 8.1E-05 29.4 5.5 71 67-139 106-190 (240)
105 2fqx_A Membrane lipoprotein TM 80.6 13 0.00045 26.4 10.3 125 7-136 56-195 (318)
106 3tlx_A Adenylate kinase 2; str 79.3 1.1 3.8E-05 30.9 2.4 41 4-44 21-61 (243)
107 3uhj_A Probable glycerol dehyd 79.0 5.8 0.0002 29.6 6.3 69 68-138 43-115 (387)
108 8abp_A L-arabinose-binding pro 78.8 14 0.00047 25.6 8.1 139 8-146 52-213 (306)
109 3fni_A Putative diflavin flavo 78.7 5.4 0.00018 25.5 5.4 9 80-88 6-14 (159)
110 3miz_A Putative transcriptiona 78.5 2.3 7.7E-05 29.8 3.9 92 10-106 67-162 (301)
111 3lkv_A Uncharacterized conserv 76.8 17 0.00058 25.6 11.9 123 8-138 64-202 (302)
112 1gud_A ALBP, D-allose-binding 76.1 16 0.00056 25.1 11.5 100 8-108 54-167 (288)
113 2dri_A D-ribose-binding protei 75.6 16 0.00056 24.8 12.9 97 9-108 53-156 (271)
114 2q5c_A NTRC family transcripti 75.1 16 0.00053 24.4 10.3 75 55-137 73-150 (196)
115 1nrz_A PTS system, sorbose-spe 74.9 9.3 0.00032 24.9 5.7 80 66-147 15-94 (164)
116 1ble_A Fructose permease; phos 72.7 9.1 0.00031 24.9 5.3 80 66-147 16-95 (163)
117 2pju_A Propionate catabolism o 72.5 20 0.00069 24.5 7.3 75 55-137 85-162 (225)
118 1vsq_C Mannose-specific phosph 71.2 10 0.00034 24.8 5.2 80 66-147 18-97 (165)
119 3hly_A Flavodoxin-like domain; 70.3 11 0.00039 24.0 5.4 18 61-78 13-30 (161)
120 3uug_A Multiple sugar-binding 70.1 25 0.00086 24.6 9.3 94 8-102 54-158 (330)
121 3ox4_A Alcohol dehydrogenase 2 68.3 9.8 0.00033 28.2 5.3 72 67-138 20-97 (383)
122 3ce9_A Glycerol dehydrogenase; 67.5 11 0.00039 27.4 5.5 81 53-137 12-96 (354)
123 3gmt_A Adenylate kinase; ssgci 67.2 3.5 0.00012 28.5 2.5 32 13-44 9-40 (230)
124 3bfj_A 1,3-propanediol oxidore 66.6 11 0.00037 27.9 5.2 70 68-137 23-100 (387)
125 2bon_A Lipid kinase; DAG kinas 64.0 19 0.00064 26.0 6.0 83 55-144 12-97 (332)
126 2dgd_A 223AA long hypothetical 63.6 14 0.00049 24.8 5.0 71 66-139 96-181 (223)
127 3p3v_A PTS system, N-acetylgal 63.1 9 0.00031 25.0 3.7 80 65-148 18-97 (163)
128 2xed_A Putative maleate isomer 62.6 15 0.0005 25.9 5.0 71 66-139 134-218 (273)
129 3lfj_A Manxb, phosphotransfera 62.0 9.3 0.00032 25.5 3.7 81 66-148 36-116 (187)
130 3e61_A Putative transcriptiona 61.9 13 0.00044 25.4 4.7 15 66-80 27-41 (277)
131 3jy6_A Transcriptional regulat 61.4 19 0.00065 24.5 5.5 19 119-137 75-93 (276)
132 1jq5_A Glycerol dehydrogenase; 60.9 18 0.00063 26.4 5.5 81 53-137 10-94 (370)
133 3qi7_A Putative transcriptiona 60.2 50 0.0017 24.5 10.3 144 5-148 78-243 (371)
134 3m9w_A D-xylose-binding peripl 59.0 19 0.00065 25.1 5.2 71 64-138 19-92 (313)
135 3o74_A Fructose transport syst 58.6 22 0.00075 24.0 5.4 19 119-137 72-90 (272)
136 3fdi_A Uncharacterized protein 57.9 8.8 0.0003 25.5 3.1 32 11-42 5-36 (201)
137 1cke_A CK, MSSA, protein (cyti 57.1 6.4 0.00022 26.2 2.3 32 13-44 6-37 (227)
138 4dik_A Flavoprotein; TM0755, e 56.6 21 0.0007 26.8 5.2 58 79-138 266-328 (410)
139 3l49_A ABC sugar (ribose) tran 56.0 17 0.00059 24.9 4.5 20 118-137 75-94 (291)
140 1vlj_A NADH-dependent butanol 55.3 28 0.00097 25.9 5.8 70 68-137 33-109 (407)
141 3l6u_A ABC-type sugar transpor 53.5 23 0.00078 24.3 4.8 71 65-138 26-98 (293)
142 1o2d_A Alcohol dehydrogenase, 53.2 44 0.0015 24.5 6.5 82 53-138 19-107 (371)
143 3guv_A Site-specific recombina 52.8 40 0.0014 21.4 5.6 74 64-137 26-113 (167)
144 3egc_A Putative ribose operon 52.0 19 0.00064 24.8 4.1 17 120-136 78-94 (291)
145 3h75_A Periplasmic sugar-bindi 51.0 29 0.00098 24.7 5.1 71 65-139 22-96 (350)
146 3gv0_A Transcriptional regulat 49.9 48 0.0016 22.6 6.0 18 120-137 80-97 (288)
147 3tb6_A Arabinose metabolism tr 48.5 47 0.0016 22.6 5.8 20 118-137 88-107 (298)
148 2l69_A Rossmann 2X3 fold prote 48.4 40 0.0014 19.8 6.7 35 53-87 26-60 (134)
149 3uug_A Multiple sugar-binding 47.8 26 0.00087 24.5 4.4 22 117-138 72-93 (330)
150 3dl0_A Adenylate kinase; phosp 47.2 15 0.00052 24.2 2.9 29 15-43 3-31 (216)
151 2iyv_A Shikimate kinase, SK; t 46.5 19 0.00065 23.0 3.3 32 13-44 3-34 (184)
152 2qip_A Protein of unknown func 46.5 17 0.00058 23.3 3.0 34 115-148 118-152 (165)
153 1zuh_A Shikimate kinase; alpha 46.0 19 0.00066 22.6 3.2 32 13-44 8-39 (168)
154 1tev_A UMP-CMP kinase; ploop, 45.3 14 0.00047 23.7 2.4 32 13-44 4-35 (196)
155 3hcw_A Maltose operon transcri 45.0 34 0.0012 23.6 4.6 18 120-137 82-99 (295)
156 3ake_A Cytidylate kinase; CMP 44.9 18 0.00061 23.5 3.0 31 14-44 4-34 (208)
157 3fb4_A Adenylate kinase; psych 44.4 16 0.00056 24.0 2.7 29 15-43 3-31 (216)
158 3brq_A HTH-type transcriptiona 44.3 61 0.0021 22.0 5.8 16 64-79 38-53 (296)
159 2h92_A Cytidylate kinase; ross 44.2 21 0.00072 23.5 3.3 32 13-44 4-35 (219)
160 1rrm_A Lactaldehyde reductase; 43.4 23 0.00079 26.1 3.6 70 68-137 21-96 (386)
161 3vaa_A Shikimate kinase, SK; s 42.8 22 0.00076 23.1 3.2 32 13-44 26-57 (199)
162 8abp_A L-arabinose-binding pro 42.8 35 0.0012 23.5 4.4 68 65-137 20-90 (306)
163 1dd9_A DNA primase, DNAG; topr 42.4 65 0.0022 23.4 5.8 57 66-123 195-256 (338)
164 4edg_A DNA primase; catalytic 42.2 15 0.00052 26.8 2.4 58 65-123 183-242 (329)
165 2au3_A DNA primase; zinc ribbo 42.0 37 0.0013 25.3 4.6 58 65-123 275-334 (407)
166 3kb2_A SPBC2 prophage-derived 41.8 22 0.00075 22.2 3.0 31 14-44 3-33 (173)
167 2hze_A Glutaredoxin-1; thiored 41.7 33 0.0011 20.1 3.6 39 1-39 7-45 (114)
168 2fqx_A Membrane lipoprotein TM 41.6 53 0.0018 23.1 5.3 12 67-78 27-38 (318)
169 1via_A Shikimate kinase; struc 41.3 22 0.00075 22.5 2.9 31 14-44 6-36 (175)
170 2q9u_A A-type flavoprotein; fl 41.0 1E+02 0.0035 22.5 7.2 51 77-127 255-307 (414)
171 1b4b_A Arginine repressor; cor 41.0 34 0.0011 18.7 3.2 31 55-88 17-48 (71)
172 4e22_A Cytidylate kinase; P-lo 40.7 21 0.00072 24.5 2.9 32 13-44 28-59 (252)
173 3dbi_A Sugar-binding transcrip 40.6 44 0.0015 23.5 4.7 60 78-137 61-127 (338)
174 3eye_A PTS system N-acetylgala 40.5 9.8 0.00033 24.9 1.1 80 66-148 20-100 (168)
175 2fvy_A D-galactose-binding per 40.1 69 0.0024 21.9 5.6 21 118-138 73-93 (309)
176 1pq4_A Periplasmic binding pro 40.1 50 0.0017 23.3 4.8 38 73-110 204-242 (291)
177 2iks_A DNA-binding transcripti 40.1 41 0.0014 23.0 4.4 18 120-137 91-108 (293)
178 2bbw_A Adenylate kinase 4, AK4 39.9 22 0.00076 24.0 2.9 32 13-44 28-59 (246)
179 3kjx_A Transcriptional regulat 39.9 96 0.0033 21.8 7.5 17 120-136 115-131 (344)
180 2c95_A Adenylate kinase 1; tra 39.8 24 0.00082 22.6 3.0 33 12-44 9-41 (196)
181 3kke_A LACI family transcripti 39.8 34 0.0012 23.7 4.0 17 65-81 33-49 (303)
182 1kag_A SKI, shikimate kinase I 39.6 29 0.00097 21.8 3.3 31 13-43 5-35 (173)
183 3pam_A Transmembrane protein; 39.4 80 0.0028 21.3 5.8 63 70-135 106-182 (259)
184 3trf_A Shikimate kinase, SK; a 39.1 29 0.001 22.0 3.3 32 13-44 6-37 (185)
185 3ksu_A 3-oxoacyl-acyl carrier 39.1 66 0.0023 21.9 5.3 72 63-135 21-97 (262)
186 3mje_A AMPHB; rossmann fold, o 38.9 48 0.0016 25.5 4.9 76 62-137 248-326 (496)
187 3szu_A ISPH, 4-hydroxy-3-methy 38.9 24 0.00083 25.7 3.0 27 13-39 227-253 (328)
188 3miz_A Putative transcriptiona 38.5 61 0.0021 22.2 5.1 59 79-137 14-78 (301)
189 3lw7_A Adenylate kinase relate 38.5 22 0.00077 22.0 2.6 31 13-44 2-32 (179)
190 1ukz_A Uridylate kinase; trans 38.0 25 0.00085 22.8 2.8 31 14-44 17-47 (203)
191 3hs3_A Ribose operon repressor 37.7 55 0.0019 22.2 4.7 60 78-137 10-75 (277)
192 3hl0_A Maleylacetate reductase 37.2 42 0.0015 24.5 4.2 69 68-138 24-96 (353)
193 3r20_A Cytidylate kinase; stru 36.8 21 0.00072 24.5 2.3 32 13-44 10-41 (233)
194 1q3t_A Cytidylate kinase; nucl 36.7 21 0.0007 24.1 2.3 32 13-44 17-48 (236)
195 3h5o_A Transcriptional regulat 36.5 1.1E+02 0.0037 21.4 6.4 59 79-137 63-126 (339)
196 1jjv_A Dephospho-COA kinase; P 36.3 37 0.0013 22.0 3.5 29 14-43 4-32 (206)
197 2bwj_A Adenylate kinase 5; pho 36.0 32 0.0011 22.0 3.1 33 12-44 12-44 (199)
198 2zfz_A Arginine repressor; DNA 36.0 39 0.0013 18.9 3.0 31 55-88 25-56 (79)
199 1e6c_A Shikimate kinase; phosp 35.3 32 0.0011 21.5 3.0 32 13-44 3-34 (173)
200 3s99_A Basic membrane lipoprot 35.3 1.3E+02 0.0044 21.9 10.9 131 5-139 78-218 (356)
201 2azn_A HTP reductase, putative 34.8 54 0.0019 21.8 4.2 33 116-148 129-161 (219)
202 2gzm_A Glutamate racemase; enz 34.8 1.1E+02 0.0038 21.2 5.9 67 80-147 5-85 (267)
203 2ze6_A Isopentenyl transferase 34.7 32 0.0011 23.6 3.1 30 14-43 3-32 (253)
204 1e4v_A Adenylate kinase; trans 34.5 30 0.001 22.7 2.8 30 15-44 3-32 (214)
205 1kht_A Adenylate kinase; phosp 34.4 20 0.00068 22.8 1.9 32 13-44 4-40 (192)
206 3cm0_A Adenylate kinase; ATP-b 34.1 25 0.00087 22.3 2.4 31 14-44 6-36 (186)
207 2cdn_A Adenylate kinase; phosp 33.7 35 0.0012 22.1 3.0 31 14-44 22-52 (201)
208 3dnf_A ISPH, LYTB, 4-hydroxy-3 33.7 24 0.00083 25.3 2.3 28 13-40 211-238 (297)
209 2p5m_A Arginine repressor; alp 33.6 37 0.0013 19.2 2.7 31 55-88 29-60 (83)
210 3exa_A TRNA delta(2)-isopenten 33.6 24 0.00083 25.6 2.3 32 12-43 3-34 (322)
211 3oow_A Phosphoribosylaminoimid 33.4 45 0.0015 21.8 3.3 58 80-137 7-68 (166)
212 3jzd_A Iron-containing alcohol 33.2 36 0.0012 24.9 3.3 68 68-138 26-98 (358)
213 2qt1_A Nicotinamide riboside k 32.2 30 0.001 22.6 2.5 31 14-44 23-54 (207)
214 3iv7_A Alcohol dehydrogenase I 32.1 1.5E+02 0.0051 21.7 6.5 68 67-138 26-97 (364)
215 1zd8_A GTP:AMP phosphotransfer 32.0 27 0.00092 23.2 2.3 32 13-44 8-39 (227)
216 3be4_A Adenylate kinase; malar 31.8 31 0.001 22.8 2.5 30 14-43 7-36 (217)
217 1qf9_A UMP/CMP kinase, protein 31.4 31 0.001 21.9 2.4 30 14-43 8-37 (194)
218 1aky_A Adenylate kinase; ATP:A 31.1 35 0.0012 22.5 2.7 30 14-43 6-35 (220)
219 2z5l_A Tylkr1, tylactone synth 31.1 1.8E+02 0.0061 22.3 7.6 76 61-137 267-342 (511)
220 4hqo_A Sporozoite surface prot 30.4 1.1E+02 0.0037 21.0 5.3 49 80-128 127-177 (266)
221 4grd_A N5-CAIR mutase, phospho 30.3 45 0.0015 21.9 2.9 20 117-136 55-74 (173)
222 3t61_A Gluconokinase; PSI-biol 30.2 45 0.0015 21.6 3.1 32 13-44 19-50 (202)
223 3iij_A Coilin-interacting nucl 30.1 40 0.0014 21.3 2.8 33 12-44 11-43 (180)
224 1uf9_A TT1252 protein; P-loop, 30.0 48 0.0016 21.2 3.2 30 14-44 10-39 (203)
225 3trh_A Phosphoribosylaminoimid 29.9 56 0.0019 21.4 3.4 58 80-137 8-69 (169)
226 1ytr_A Bacteriocin plantaricin 29.7 17 0.00058 15.3 0.6 11 68-78 16-26 (26)
227 3g13_A Putative conjugative tr 29.4 1.1E+02 0.0037 19.3 5.4 77 61-137 24-113 (169)
228 1shu_X Anthrax toxin receptor 29.3 75 0.0026 19.9 4.1 82 65-147 84-175 (182)
229 2pt5_A Shikimate kinase, SK; a 29.3 51 0.0017 20.4 3.2 30 14-43 2-31 (168)
230 2if2_A Dephospho-COA kinase; a 29.1 43 0.0015 21.6 2.9 30 14-44 3-32 (204)
231 2grj_A Dephospho-COA kinase; T 29.0 40 0.0014 22.2 2.6 31 13-43 13-43 (192)
232 2qv7_A Diacylglycerol kinase D 28.8 1.1E+02 0.0039 21.8 5.3 62 79-140 25-91 (337)
233 1knq_A Gluconate kinase; ALFA/ 28.8 40 0.0014 21.2 2.6 31 13-43 9-39 (175)
234 3qi7_A Putative transcriptiona 28.8 1.8E+02 0.0061 21.6 7.1 75 64-138 27-120 (371)
235 2xb4_A Adenylate kinase; ATP-b 28.3 41 0.0014 22.3 2.7 30 14-43 2-31 (223)
236 1zak_A Adenylate kinase; ATP:A 28.0 30 0.001 22.9 2.0 32 13-44 6-37 (222)
237 4b4k_A N5-carboxyaminoimidazol 27.9 52 0.0018 21.8 3.0 19 118-136 66-84 (181)
238 1ak2_A Adenylate kinase isoenz 27.7 43 0.0015 22.4 2.7 31 14-44 18-48 (233)
239 3nwj_A ATSK2; P loop, shikimat 27.2 55 0.0019 22.6 3.2 33 12-44 48-80 (250)
240 3ors_A N5-carboxyaminoimidazol 27.2 50 0.0017 21.5 2.7 58 80-137 5-66 (163)
241 3hws_A ATP-dependent CLP prote 27.1 1.1E+02 0.0038 21.9 5.0 33 13-45 52-84 (363)
242 3asz_A Uridine kinase; cytidin 26.9 27 0.00093 22.8 1.6 29 14-42 8-38 (211)
243 3kuu_A Phosphoribosylaminoimid 26.9 51 0.0017 21.7 2.8 19 118-136 56-74 (174)
244 3out_A Glutamate racemase; str 26.8 1.5E+02 0.005 20.7 5.4 69 80-148 9-90 (268)
245 3ff4_A Uncharacterized protein 26.7 69 0.0024 19.4 3.3 26 60-86 14-39 (122)
246 2rhm_A Putative kinase; P-loop 26.4 50 0.0017 20.9 2.8 30 14-43 7-36 (193)
247 3bvp_A INT, TP901-1 integrase; 25.9 1.2E+02 0.004 18.5 5.9 75 62-136 23-109 (138)
248 3s40_A Diacylglycerol kinase; 25.7 1.1E+02 0.0038 21.5 4.7 60 79-139 9-73 (304)
249 3slk_A Polyketide synthase ext 25.5 96 0.0033 25.4 4.7 20 118-137 572-591 (795)
250 1xxa_A ARGR, arginine represso 25.5 93 0.0032 17.2 3.9 31 55-88 19-51 (78)
251 1z6g_A Guanylate kinase; struc 25.4 54 0.0019 21.8 2.9 25 12-36 23-47 (218)
252 3f6r_A Flavodoxin; FMN binding 25.4 70 0.0024 19.5 3.2 15 63-77 16-30 (148)
253 3jtw_A Dihydrofolate reductase 25.0 1.1E+02 0.0039 19.6 4.3 33 116-148 96-128 (178)
254 1kq3_A Glycerol dehydrogenase; 24.9 37 0.0013 24.9 2.1 78 53-137 20-102 (376)
255 3lp6_A Phosphoribosylaminoimid 24.8 54 0.0018 21.6 2.6 58 80-137 9-70 (174)
256 3uhf_A Glutamate racemase; str 24.7 1.6E+02 0.0054 20.7 5.2 68 80-148 26-107 (274)
257 1ytl_A Acetyl-COA decarboxylas 24.4 1E+02 0.0034 20.1 3.9 36 7-44 29-68 (174)
258 1vht_A Dephospho-COA kinase; s 24.3 64 0.0022 21.1 3.1 29 14-43 6-34 (218)
259 4eun_A Thermoresistant glucoki 24.2 60 0.002 21.0 2.9 31 13-43 30-60 (200)
260 2gd9_A Hypothetical protein YY 24.1 1E+02 0.0035 19.9 4.0 32 117-148 106-137 (189)
261 2pbr_A DTMP kinase, thymidylat 24.0 69 0.0024 20.2 3.1 30 14-43 2-34 (195)
262 2p4g_A Hypothetical protein; p 24.0 89 0.0031 21.7 3.8 33 116-148 174-206 (270)
263 3oig_A Enoyl-[acyl-carrier-pro 23.7 1.7E+02 0.0058 19.6 7.8 69 65-136 21-94 (266)
264 3d3q_A TRNA delta(2)-isopenten 23.5 46 0.0016 24.3 2.3 30 14-43 9-38 (340)
265 1ycg_A Nitric oxide reductase; 23.5 2.1E+02 0.0071 20.6 7.9 57 72-128 245-303 (398)
266 3a8t_A Adenylate isopentenyltr 23.4 56 0.0019 23.9 2.7 30 14-43 42-71 (339)
267 1y63_A LMAJ004144AAA protein; 23.3 54 0.0019 20.9 2.5 32 13-44 11-43 (184)
268 2fr1_A Erythromycin synthase, 23.3 1.2E+02 0.0041 23.1 4.7 76 62-137 235-313 (486)
269 3v7e_A Ribosome-associated pro 23.3 1E+02 0.0035 17.1 3.3 40 5-44 18-60 (82)
270 3cf4_G Acetyl-COA decarboxylas 23.3 1.1E+02 0.0038 19.5 4.0 41 4-44 25-69 (170)
271 1o4v_A Phosphoribosylaminoimid 23.3 87 0.003 20.8 3.4 62 76-137 11-76 (183)
272 1b73_A Glutamate racemase; iso 22.5 1.9E+02 0.0065 19.7 5.3 67 80-147 2-82 (254)
273 3no4_A Creatininase, creatinin 22.3 2.1E+02 0.0071 20.1 6.9 54 33-88 74-130 (267)
274 2hqb_A Transcriptional activat 22.3 2E+02 0.0067 19.8 10.9 133 8-146 58-197 (296)
275 1oj7_A Hypothetical oxidoreduc 22.3 2E+02 0.0067 21.2 5.6 65 69-137 43-114 (408)
276 1e5d_A Rubredoxin\:oxygen oxid 22.0 2.3E+02 0.0077 20.4 8.0 51 78-128 252-304 (402)
277 1cz3_A Dihydrofolate reductase 22.0 1.4E+02 0.0046 18.9 4.2 32 116-147 80-111 (168)
278 3okf_A 3-dehydroquinate syntha 21.8 81 0.0028 23.5 3.4 81 53-137 41-131 (390)
279 1xmp_A PURE, phosphoribosylami 21.7 81 0.0028 20.6 3.0 58 80-137 13-74 (170)
280 3foz_A TRNA delta(2)-isopenten 21.5 57 0.0019 23.6 2.4 31 13-43 11-41 (316)
281 3rg8_A Phosphoribosylaminoimid 21.4 1.3E+02 0.0044 19.4 3.9 58 80-137 4-66 (159)
282 3crm_A TRNA delta(2)-isopenten 21.3 56 0.0019 23.6 2.4 30 14-43 7-36 (323)
283 1b4a_A Arginine repressor; hel 21.0 97 0.0033 19.6 3.2 31 55-88 95-126 (149)
284 1ly1_A Polynucleotide kinase; 21.0 62 0.0021 20.1 2.4 30 14-43 4-34 (181)
285 2jaq_A Deoxyguanosine kinase; 20.9 68 0.0023 20.4 2.6 29 14-42 2-30 (205)
286 1qhx_A CPT, protein (chloramph 20.6 1.1E+02 0.0037 19.0 3.5 31 13-43 4-34 (178)
287 1ta9_A Glycerol dehydrogenase; 20.4 54 0.0019 24.9 2.2 69 68-137 81-153 (450)
288 3hdt_A Putative kinase; struct 20.4 59 0.002 22.0 2.2 30 13-42 15-44 (223)
289 2jfz_A Glutamate racemase; cel 20.1 2.2E+02 0.0074 19.4 5.8 60 81-141 3-74 (255)
290 2duw_A Putative COA-binding pr 20.0 1.4E+02 0.0048 18.4 3.9 33 106-138 71-103 (145)
No 1
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=99.94 E-value=2.1e-26 Score=172.97 Aligned_cols=148 Identities=35% Similarity=0.652 Sum_probs=132.4
Q ss_pred hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC-CCCcccEEEecCChhHHHHHHHHHHHhcCCc
Q psy18065 2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWT 79 (149)
Q Consensus 2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~ 79 (149)
+.+..|++++++|.+||||.+|..+.+++++++.+++|+|++++. +. .+..+|+||+.|++..++.++++++++|||+
T Consensus 60 ~~~~a~~l~~~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~ 139 (395)
T 3h6g_A 60 ASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWK 139 (395)
T ss_dssp HHHHHHHHHHHCCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCTTCCCCSEEEEEECHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhhhcCcEEEECCCChhHHHHHHHHHhcCCCCeEeeccCcccccccCceEEEecCCHHHHHHHHHHHHHHCCCe
Confidence 356789999989999999999999999999999999999998753 22 3456889999999999999999999999999
Q ss_pred EEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCC--CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 80 KVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP--STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 80 ~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~--~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
||+++|++++|...++.+.+.+++.|+++...+++. .|+..++++|+++++++|++.+....+..+++||
T Consensus 140 ~v~ii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa 211 (395)
T 3h6g_A 140 TVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQA 211 (395)
T ss_dssp EEEEEESSTHHHHHTHHHHTGGGTSSCEEEEEECCSSGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred EEEEEEEChhHHHHHHHHHHhhhcCCceEEEEEeCCCchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHH
Confidence 999999888899889999988888899987766653 5899999999999999999999999999999885
No 2
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=99.94 E-value=2.1e-26 Score=171.88 Aligned_cols=144 Identities=22% Similarity=0.415 Sum_probs=125.5
Q ss_pred hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065 2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV 81 (149)
Q Consensus 2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v 81 (149)
+.+.+|+++++||.|||||.+|..+.+++++++.++||++++++..+ +..+|.+++.|. ++.++++++++|||+||
T Consensus 58 ~~~~~~~l~~~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~~~-~~~~~~~~~~~~---~~~a~~~l~~~~~w~~v 133 (389)
T 4gpa_A 58 VTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTE-GESQFVLQLRPS---LRGALLSLLDHYEWNCF 133 (389)
T ss_dssp HHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCS-SCCSSEEECSCC---CHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhcCCEEEEeCCccHHHHHHHHHHHHhCCCceecccccc-ccccCCccccCC---HHHHHHHHHHHcCCcEE
Confidence 56789999999999999999999999999999999999999876443 455677777776 45799999999999999
Q ss_pred EEEeecCcchhhHHHHHhCCCCCCceEEEEecC-C--CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN-P--STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~-~--~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
++||+++++...++++.+.+.+.|+|+...... . .|++++|++++++++++||++|..+.+..+++||
T Consensus 134 aii~~~d~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a 204 (389)
T 4gpa_A 134 VFLYDTDRGYSILQAIMEKAGQNGWHVSAICVENFNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQI 204 (389)
T ss_dssp EEEECSTTCSHHHHHHHHHHHTTTCEEEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHH
T ss_pred EEEEecchhhHHHHHHHHHHHhcCceEEEEeecCCcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHH
Confidence 999999887788888888888889998776543 2 5799999999999999999999999999999875
No 3
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=99.94 E-value=4.8e-26 Score=171.28 Aligned_cols=144 Identities=20% Similarity=0.441 Sum_probs=126.5
Q ss_pred hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065 2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV 81 (149)
Q Consensus 2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v 81 (149)
+.+.+|++++++|.|||||.+|..+.+++++++.++||+|+++. +..+..+|.||+.|+ ++.++++++++|||+||
T Consensus 58 a~~~a~~li~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~-~~~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~v 133 (389)
T 3o21_A 58 VTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF-PTDADVQFVIQMRPA---LKGAILSLLSYYKWEKF 133 (389)
T ss_dssp HHHHHHHHHTTTCSCEEECCCTTTHHHHHHHHHHHTCCEEECSC-CCSSCCSSEEECSCC---SHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHhcCcEEEEeCCChhHHHHHHHHhccCCCceeecCC-CCccCCceEEEEccC---HHHHHHHHHHhCCCCEE
Confidence 56788999998999999999999999999999999999998865 223455778888887 88999999999999999
Q ss_pred EEEeecCcchhhHHHHHhCCCCCCceEEEEecC---C-CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN---P-STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~---~-~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
++||++++|...++.+.+.+++.|+|+...+.. . .|+..+|++|+++++++|+++|+.+.+..+++||
T Consensus 134 aii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa 205 (389)
T 3o21_A 134 VYLYDTERGFSVLQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQV 205 (389)
T ss_dssp EEEECSTTCSHHHHHHHHHHHHTTCEEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHH
T ss_pred EEEEcCcHHHHHHHHHHHHhhcCCCeEEEEEecCCCCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 999976899999999988888889998876543 2 2799999999999999999999999999999885
No 4
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=99.93 E-value=6.5e-26 Score=169.50 Aligned_cols=148 Identities=8% Similarity=0.086 Sum_probs=113.9
Q ss_pred hHHHHHHHhh-CCcEEEEc-CCCCCcHHH--HHHhhcccCCCceeeccC-C---C-CCCcccEEEecCChhHHHHHHHHH
Q psy18065 2 AEATMCRQLQ-NGVQALFG-PSDALLGPH--VQSICEALDVPHMESRLD-L---E-LNSKEFSVNLYPSQKLLNAAFKDV 72 (149)
Q Consensus 2 ~~~~~c~~~~-~~v~aiiG-p~~s~~~~~--v~~~~~~~~iP~is~~~~-~---~-~~~~~~~~~~~p~~~~~~~ai~~l 72 (149)
+.+.+|+++. .+|.|||| |.++.++.+ ++++++.++||+|++++. + + ...+||+||+.|++..++.+++++
T Consensus 51 ~~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~l 130 (364)
T 3qel_B 51 IITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNI 130 (364)
T ss_dssp HHHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHH
Confidence 4678999996 57988875 555555655 999999999999999852 2 2 245799999999999999999999
Q ss_pred HHhcCCcEEEEEeecCcchhhHHHHHh-CCCCCCceEEEE---ecC--CCchHHHH-HHHHhCCCceEEEecCchhHHHH
Q psy18065 73 IRFLNWTKVAIVYEEDNGLFKLQELVK-TPPTLKTEMYIR---HAN--PSTYRNVL-REIRQKEIFNLIIDTSTTHISQF 145 (149)
Q Consensus 73 l~~~~W~~v~vi~~~~~~~~~l~~l~~-~~~~~~~~v~~~---~~~--~~d~~~~l-~~i~~~~~~~iil~~~~~~~~~i 145 (149)
+++|||+||++||+++.|...+.+.++ .....++|+.+. ..+ ..+++..+ ++|+++++++||++|+.+.+..+
T Consensus 131 l~~fgW~~V~iI~~d~~g~~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~l 210 (364)
T 3qel_B 131 MEEYDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYI 210 (364)
T ss_dssp HHHTTCCEEEEEEESCTTHHHHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHH
T ss_pred HHHCCCeEEEEEEeCCccHHHHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHH
Confidence 999999999999998655444433322 222334566542 222 25788888 79999999999999999999999
Q ss_pred HhhC
Q psy18065 146 FRAV 149 (149)
Q Consensus 146 l~qA 149 (149)
++||
T Consensus 211 l~~a 214 (364)
T 3qel_B 211 FEVA 214 (364)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 5
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=99.93 E-value=3.2e-26 Score=171.37 Aligned_cols=144 Identities=24% Similarity=0.478 Sum_probs=112.7
Q ss_pred hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065 2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV 81 (149)
Q Consensus 2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v 81 (149)
+.+.+|++++++|.+||||.+|..+.+++++++.++||+|++++. ..+..+|+||+.|+ ++.++++++++|||+||
T Consensus 49 a~~~~~~li~~~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~-~~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~v 124 (376)
T 3hsy_A 49 VTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP-TDGTHPFVIQMRPD---LKGALLSLIEYYQWDKF 124 (376)
T ss_dssp HHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCC-CCSCCTTEEECSCC---CHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhcCcEEEECCCchhHHHHHHHHhccCcCceeecCCC-CcccCCceEEeCcc---HHHHHHHHHHhcCCCEE
Confidence 567899999989999999999999999999999999999998863 24566889999987 88999999999999999
Q ss_pred EEEeecCcchhhHHHHHhCCCCCCceEEEEec---C----CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIRHA---N----PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~---~----~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
++||++++|...++.+.+.+++.|+++..... + ..|+..+|++|+++++++|+++|..+.+..+++||
T Consensus 125 aii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa 199 (376)
T 3hsy_A 125 AYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQV 199 (376)
T ss_dssp EEEECSTTCSHHHHHHHHHHHHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHH
T ss_pred EEEEeCchhHHHHHHHHHHhhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHH
Confidence 99996689999999998888778888876543 2 25899999999999999999999999999999885
No 6
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=99.92 E-value=2e-25 Score=167.62 Aligned_cols=148 Identities=24% Similarity=0.427 Sum_probs=122.8
Q ss_pred hHHHHHHHhhCCcEEEEcCCCCCc-HHHHHHhhcccCCCceeeccCC-CCCCcccE--EEecCChhHHHHHHHHHHHhcC
Q psy18065 2 AEATMCRQLQNGVQALFGPSDALL-GPHVQSICEALDVPHMESRLDL-ELNSKEFS--VNLYPSQKLLNAAFKDVIRFLN 77 (149)
Q Consensus 2 ~~~~~c~~~~~~v~aiiGp~~s~~-~~~v~~~~~~~~iP~is~~~~~-~~~~~~~~--~~~~p~~~~~~~ai~~ll~~~~ 77 (149)
+.+..|++++++|.+||||.+|.. +.+++++++.+++|+|++++.. ....++++ ||+.|++..++.++++++++||
T Consensus 59 ~~~~~~~l~~~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~~~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g 138 (393)
T 3om0_A 59 TTDTMCQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPRLQYLRFASVSLYPSNEDVSLAVSRILKSFN 138 (393)
T ss_dssp HHHHHHHHGGGCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCCCCC----CCSCCEESSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCCcCccccccccceEEecCCHHHHHHHHHHHHHhCC
Confidence 356789999889999999999955 4799999999999999998643 22445666 9999999999999999999999
Q ss_pred CcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecC-CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 78 WTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN-PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 78 W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~-~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
|+||++||+++.+...++++.+.+...|+++..+.++ ..|+..++++|+++++++|+++|..+.+..+++||
T Consensus 139 ~~~vaii~~~~~~g~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a 211 (393)
T 3om0_A 139 YPSASLICAKAECLLRLEELVRGFLISKETLSVRMLDDSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKA 211 (393)
T ss_dssp SCCEEEEESSTTHHHHTHHHHHHHHHSSSCEEEEECC-CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHH
T ss_pred CcEEEEEEeCchHHHHHHHHHHhhhccCCeEEEEecCCCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHH
Confidence 9999999998654455677666655678888776663 36899999999999999999999999999999885
No 7
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=99.92 E-value=2.7e-25 Score=171.39 Aligned_cols=138 Identities=14% Similarity=0.252 Sum_probs=120.3
Q ss_pred CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 12 NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 12 ~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
++|+|||||.+|..+.+++++++.+++|+|++++. + + ...+||+||+.|++..++.++++++++|||+||++|+++
T Consensus 115 ~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~d 194 (479)
T 3sm9_A 115 LLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASE 194 (479)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 47999999999999999999999999999999853 2 2 245799999999999999999999999999999999987
Q ss_pred -CcchhhHHHHHhCCCCCCceEEEE-ecCC----CchHHHH-HHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 88 -DNGLFKLQELVKTPPTLKTEMYIR-HANP----STYRNVL-REIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 88 -~~~~~~l~~l~~~~~~~~~~v~~~-~~~~----~d~~~~l-~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
++|...++.+.+.+++.|+|+.+. .++. .|+...+ +.|+++++++||+++....+..+++||
T Consensus 195 d~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~~~~~~~~~~l~~~~ 263 (479)
T 3sm9_A 195 GDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAA 263 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHH
Confidence 589899999999888899999764 3442 4688888 678899999999999999898888874
No 8
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=99.92 E-value=9.9e-25 Score=163.43 Aligned_cols=148 Identities=13% Similarity=0.237 Sum_probs=116.7
Q ss_pred hHHHHHH-HhhCCcEEEEc-----CCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHH
Q psy18065 2 AEATMCR-QLQNGVQALFG-----PSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKD 71 (149)
Q Consensus 2 ~~~~~c~-~~~~~v~aiiG-----p~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ 71 (149)
+++..|+ +++++|.||+| |.++..+.+++++++.+++|+|++++. + + ...++|+||+.|++..++.++++
T Consensus 53 a~~~~~~~Li~~~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~ 132 (384)
T 3qek_A 53 MALSVCEDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFE 132 (384)
T ss_dssp HHHHHHHHTGGGTEEEEEECC--------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHcCceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHH
Confidence 4567798 67789999999 567788899999999999999998753 2 2 24568999999999999999999
Q ss_pred HHHhcCCcEEEEEeec-CcchhhHHHHHhCCCCCCce-----------E-----------EEEecC--CCchHHHHHHHH
Q psy18065 72 VIRFLNWTKVAIVYEE-DNGLFKLQELVKTPPTLKTE-----------M-----------YIRHAN--PSTYRNVLREIR 126 (149)
Q Consensus 72 ll~~~~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~-----------v-----------~~~~~~--~~d~~~~l~~i~ 126 (149)
++++|||+||++||++ ++|...++.+.+.+++.|+. + .+..++ ..|+..++++|+
T Consensus 133 ~~~~~gw~~v~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~ 212 (384)
T 3qek_A 133 MMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAK 212 (384)
T ss_dssp HHHHTTCCEEEEEEESSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHH
T ss_pred HHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHH
Confidence 9999999999999997 47887777777776666642 2 223332 368999999999
Q ss_pred hCCCceEEEecCchhHHHHHhhC
Q psy18065 127 QKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 127 ~~~~~~iil~~~~~~~~~il~qA 149 (149)
++++++||++++.+.+..+++||
T Consensus 213 ~~~~~vii~~~~~~~~~~~~~~a 235 (384)
T 3qek_A 213 ELEARVIILSASEDDATAVYKSA 235 (384)
T ss_dssp TSSCCEEEEECCHHHHHHHHHHH
T ss_pred hcCCcEEEEECCHHHHHHHHHHH
Confidence 99999999999999999999875
No 9
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=99.92 E-value=9.6e-25 Score=166.13 Aligned_cols=145 Identities=12% Similarity=0.185 Sum_probs=122.8
Q ss_pred HHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CC-C-CcccEEEecCChhHHHHHHHHHHHhcCC
Q psy18065 4 ATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--EL-N-SKEFSVNLYPSQKLLNAAFKDVIRFLNW 78 (149)
Q Consensus 4 ~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~-~-~~~~~~~~~p~~~~~~~ai~~ll~~~~W 78 (149)
+..|...+++|.+||||.+|..+.+++++++.+++|+|++++. + ++ . .++|+||+.|++..++.++++++++|||
T Consensus 75 ~~~~~~~~~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w 154 (441)
T 1jdp_A 75 DRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHW 154 (441)
T ss_dssp HHHHHTTTCCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhccCCceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCC
Confidence 3456544558999999999999999999999999999999853 2 22 2 5789999999999999999999999999
Q ss_pred cEEEEEeec-Ccchh---hHHHHHhCCCCCCceEEEEecC---CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 79 TKVAIVYEE-DNGLF---KLQELVKTPPTLKTEMYIRHAN---PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 79 ~~v~vi~~~-~~~~~---~l~~l~~~~~~~~~~v~~~~~~---~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
+||++||++ ++|.. .++.+.+.+++.|+|+....+. ..|+..++++|+ +++++|++.+..+.+..+++||
T Consensus 155 ~~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~ 231 (441)
T 1jdp_A 155 SRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVA 231 (441)
T ss_dssp CEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHH
T ss_pred cEEEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCcccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHH
Confidence 999999987 57777 8888888877789998765543 258999999999 8889999999998888888874
No 10
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=99.91 E-value=1.2e-24 Score=168.34 Aligned_cols=140 Identities=16% Similarity=0.313 Sum_probs=119.9
Q ss_pred hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEe
Q psy18065 10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVY 85 (149)
Q Consensus 10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~ 85 (149)
.+++|.|||||.+|..+.+++++++.+++|+|++++. + + ...+||+||+.|++..++.++++++++|||+||++|+
T Consensus 125 ~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~ 204 (496)
T 3ks9_A 125 TKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVH 204 (496)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEE
Confidence 3568999999999999999999999999999999853 3 2 2457999999999999999999999999999999999
Q ss_pred ec-CcchhhHHHHHhCCCCCCceEEEE-ecC--C--CchHHHHHHHHhC--CCceEEEecCchhHHHHHhhC
Q psy18065 86 EE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--P--STYRNVLREIRQK--EIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 86 ~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~--~d~~~~l~~i~~~--~~~~iil~~~~~~~~~il~qA 149 (149)
++ ++|...++.+.+.+++.|+|+.+. .++ . .|+..++++|+++ ++++|++++....+..+++||
T Consensus 205 ~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~ 276 (496)
T 3ks9_A 205 TEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAM 276 (496)
T ss_dssp ESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEecChHHHHHHHHHH
Confidence 87 589999999998888889999864 343 2 4789999999985 788899999888888888764
No 11
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=99.91 E-value=4.8e-24 Score=166.86 Aligned_cols=139 Identities=16% Similarity=0.257 Sum_probs=120.0
Q ss_pred hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CC-CCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065 11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--EL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE 86 (149)
Q Consensus 11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~ 86 (149)
+++|.|||||.+|..+.+++.+++.+++|+|++++. + ++ ..++|+||+.|++..++.++++++++|||+||++|++
T Consensus 115 ~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~ 194 (555)
T 2e4u_A 115 PLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVAS 194 (555)
T ss_dssp CCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 457999999999999999999999999999999853 2 22 3578999999999999999999999999999999998
Q ss_pred c-CcchhhHHHHHhCCCCCCceEEEE-ecCC----CchHHHHHHHHh-CCCceEEEecCchhHHHHHhhC
Q psy18065 87 E-DNGLFKLQELVKTPPTLKTEMYIR-HANP----STYRNVLREIRQ-KEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 87 ~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~~----~d~~~~l~~i~~-~~~~~iil~~~~~~~~~il~qA 149 (149)
+ ++|...++.+.+.+++.|+|+... .++. .|+..++++|++ +++++||+++....+..+++||
T Consensus 195 d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~~~~~~~~~~~~ 264 (555)
T 2e4u_A 195 EGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAA 264 (555)
T ss_dssp SSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHH
T ss_pred eChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEcCHHHHHHHHHHH
Confidence 7 688888899988888889998763 4432 478889999975 7899999999988888888764
No 12
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=99.91 E-value=4e-25 Score=165.73 Aligned_cols=144 Identities=22% Similarity=0.398 Sum_probs=126.5
Q ss_pred hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065 2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV 81 (149)
Q Consensus 2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v 81 (149)
+.+.+|++++++|.+|+||.+|..+.+++++++.+++|+|+++. +..+..+|.+|+.|+ ++.++++++++|||+||
T Consensus 56 a~~~~~~l~~~~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~~-~~~~~~~~~~~~~p~---~~~a~~~~~~~~g~~~v 131 (384)
T 3saj_A 56 MTYRFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSF-PVDTSNQFVLQLRPE---LQEALISIIDHYKWQTF 131 (384)
T ss_dssp HHHHHHHHHHTTCSCEEECCCHHHHHHHHHHHHHHTCCEEECSC-CCSSCCTTEEECSCC---CHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhcCeEEEECCCCHHHHHHHHHHhccCCCCeEeccc-cCcCccCceEEeccc---HHHHHHHHHHHCCCcEE
Confidence 56788999998999999999999999999999999999999863 223456788999998 78999999999999999
Q ss_pred EEEeecCcchhhHHHHHhCCCCCCceEEEEecC---CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN---PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~---~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
++||++++|...++.+.+.+++.|+|+...... ..|+..+|++|+++++++|++++....+..+++||
T Consensus 132 ~ii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa 202 (384)
T 3saj_A 132 VYIYDADRGLSVLQRVLDTAAEKNWQVTAVNILTTTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQI 202 (384)
T ss_dssp EEEECSTTCSHHHHHHHHHHHHHTCEEEEEEGGGCCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHH
T ss_pred EEEEeCchhHHHHHHHHHHhhhcCceEEEEEeccCCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHH
Confidence 999977899999999988888889998765542 25799999999999999999999999999999885
No 13
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.91 E-value=3e-24 Score=174.02 Aligned_cols=144 Identities=24% Similarity=0.478 Sum_probs=127.3
Q ss_pred hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065 2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV 81 (149)
Q Consensus 2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v 81 (149)
+.+..|++++++|.||+||.+|..+.+++++++.+++|+|+++.. .....+|+||+.|+ ++.++++++++|||+||
T Consensus 49 a~~~~~~l~~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~~~-~~~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v 124 (823)
T 3kg2_A 49 VTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP-TDGTHPFVIQMRPD---LKGALLSLIEYYQWDKF 124 (823)
T ss_dssp HHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCC-CSSCCSSEEECSCC---CHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHhcCcEEEEcCCChhHHHHHHHHhhcCCCceeecccC-CCCCCceEEEeCCC---HHHHHHHHHHHCCCCEE
Confidence 567789999989999999999999999999999999999998532 23466899999999 88999999999999999
Q ss_pred EEEeecCcchhhHHHHHhCCCCCCceEEEEec---C----CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIRHA---N----PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~---~----~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
++||++++|...++.+.+.+++.|+|+..... + ..|+..++++|+++++++||+++..+.+..+++||
T Consensus 125 ~ii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a 199 (823)
T 3kg2_A 125 AYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQV 199 (823)
T ss_dssp EEEECGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHH
T ss_pred EEEEeCChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHH
Confidence 99997788999999999988888999876532 2 35789999999999999999999999999999885
No 14
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=99.91 E-value=5.1e-24 Score=161.67 Aligned_cols=148 Identities=7% Similarity=0.104 Sum_probs=129.2
Q ss_pred hHHHHHHHhh--CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CC-CCcccEEEecCChhHHHHHHHHHHHh
Q psy18065 2 AEATMCRQLQ--NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--EL-NSKEFSVNLYPSQKLLNAAFKDVIRF 75 (149)
Q Consensus 2 ~~~~~c~~~~--~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~-~~~~~~~~~~p~~~~~~~ai~~ll~~ 75 (149)
+.+.+++++. ++|.+||||.+|..+.+++++++.+++|+|++++. + +. ..++|+||+.|++..++.++++++++
T Consensus 72 a~~~a~~li~~~~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~ 151 (433)
T 4f11_A 72 GLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKH 151 (433)
T ss_dssp HHHHHHHHHHHSCCCSEEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHH
Confidence 4566788886 38999999999999999999999999999998753 2 22 35789999999999999999999999
Q ss_pred cCCcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 76 LNWTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 76 ~~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
|||++|++||++ ++|....+.+.+.+++.|+|+......+.|+.+++++|+++++++|++++....+..+++||
T Consensus 152 ~g~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a 226 (433)
T 4f11_A 152 YQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCA 226 (433)
T ss_dssp TTCCEEEEEEESSHHHHHHHHHHHHHSSSSSCEEEEEEEESSCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHH
T ss_pred cCCcEEEEEEecchhhHHHHHHHHHHHHHcCceEEEEeccCcCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHH
Confidence 999999999998 47888888899889889999876443336899999999999999999999999999999875
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.90 E-value=2.2e-24 Score=166.28 Aligned_cols=138 Identities=14% Similarity=0.241 Sum_probs=109.3
Q ss_pred CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 12 NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 12 ~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
++|.|||||.+|..+.+++++++.+++|+|++++. + + ...+||+||+.|++..++.++++++++|||+||++|+++
T Consensus 116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d 195 (481)
T 3mq4_A 116 EKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASE 195 (481)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEEc
Confidence 67999999999999999999999999999999853 3 2 245789999999999999999999999999999999987
Q ss_pred -CcchhhHHHHHhCCCC-CCceEEEE-ecC----CC--chHHHHHHHH-hCCCceEEEecCchhHHHHHhhC
Q psy18065 88 -DNGLFKLQELVKTPPT-LKTEMYIR-HAN----PS--TYRNVLREIR-QKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 88 -~~~~~~l~~l~~~~~~-~~~~v~~~-~~~----~~--d~~~~l~~i~-~~~~~~iil~~~~~~~~~il~qA 149 (149)
++|...++.+.+.+.+ .|+|+.+. .++ .. |+...+.+|+ ++++++||+++..+.+..+++||
T Consensus 196 ~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vIi~~~~~~~~~~l~~~~ 267 (481)
T 3mq4_A 196 GSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAA 267 (481)
T ss_dssp CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CEEECCCSSHHHHHC---
T ss_pred chhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEEEEEEChHHHHHHHHHH
Confidence 5899999999988775 78998753 332 13 7889999998 57999999999999888888875
No 16
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=99.89 E-value=4.9e-23 Score=156.16 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=119.8
Q ss_pred HHHHHHHh-hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CC-CCcccEEEecCChhHHHHHHHHHHHhcC
Q psy18065 3 EATMCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--EL-NSKEFSVNLYPSQKLLNAAFKDVIRFLN 77 (149)
Q Consensus 3 ~~~~c~~~-~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~ 77 (149)
....++++ +++|.+||||.+|..+.+++++++.+++|+|++++. + ++ ..++|+||+.|++..++.++++++++||
T Consensus 66 ~~~a~~~l~~~~v~aviG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~ 145 (435)
T 1dp4_A 66 PLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLG 145 (435)
T ss_dssp HHHHHHHHHHHCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCceEEECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCC
Confidence 34556665 468999999999999999999999999999998753 2 22 3478999999999999999999999999
Q ss_pred CcEEEEE------eecC-cchhhHHHHHhCCCC-CCceEEEEecC---CCchHHHHHHHHhCCCceEEEecCchhHHHHH
Q psy18065 78 WTKVAIV------YEED-NGLFKLQELVKTPPT-LKTEMYIRHAN---PSTYRNVLREIRQKEIFNLIIDTSTTHISQFF 146 (149)
Q Consensus 78 W~~v~vi------~~~~-~~~~~l~~l~~~~~~-~~~~v~~~~~~---~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il 146 (149)
|+||++| ++++ +| ..++.+.+.+.+ .|+|+...... ..|+.+++++|++ ++++|++.+....+..++
T Consensus 146 w~~v~ii~~~d~~~~~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~ 223 (435)
T 1dp4_A 146 WEHQALVLYADRLGDDRPCF-FIVEGLYMRVRERLNITVNHQEFVEGDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLM 223 (435)
T ss_dssp CCSEEEEEEECCSSSCCHHH-HHHHHHHHHHHHHHCCEEEEEEECTTCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHH
T ss_pred CcEEEEEEEccCCCCcchHH-HHHHHHHHHHHhhcCeEEEEEEEecCchhhHHHHHHHHHh-hCceEEEecChHHHHHHH
Confidence 9999999 5543 45 667777776666 78998765443 2589999999999 899999999998888888
Q ss_pred hhC
Q psy18065 147 RAV 149 (149)
Q Consensus 147 ~qA 149 (149)
+||
T Consensus 224 ~~a 226 (435)
T 1dp4_A 224 LLA 226 (435)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 17
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=99.81 E-value=2.3e-19 Score=135.56 Aligned_cols=148 Identities=11% Similarity=0.112 Sum_probs=123.2
Q ss_pred hHHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC--------CCCcccEEEecCChhHHHHHHHHH
Q psy18065 2 AEATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE--------LNSKEFSVNLYPSQKLLNAAFKDV 72 (149)
Q Consensus 2 ~~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~--------~~~~~~~~~~~p~~~~~~~ai~~l 72 (149)
+.+..++++. ++|.+||||.+|..+.+++++++.++||+|+++..+. ...++|+||+.|++..++.+++++
T Consensus 71 a~~~a~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~ 150 (419)
T 3h5l_A 71 VIQSAQRLIDRDNASALIAGYNLENGTALHDVAADAGVIAMHANTVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKF 150 (419)
T ss_dssp HHHHHHHHHHTTCCSEEECSCCSSCSCHHHHHHHHHTCEEEECCCCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCeEEEccccchhHHHhHHHHHHcCCeEEEcCcchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHH
Confidence 3456778887 7999999999999999999999999999999764321 135688999999999999999999
Q ss_pred HHhc--------CCcEEEEEeecC-cchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecC-c
Q psy18065 73 IRFL--------NWTKVAIVYEED-NGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTS-T 139 (149)
Q Consensus 73 l~~~--------~W~~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~-~ 139 (149)
++++ +|++|++||+++ +|....+.+.+.+++.|+++... .++ ..|+..++++|++.++++|++.+. .
T Consensus 151 ~~~~~~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~ 230 (419)
T 3h5l_A 151 LKDIEDNGEFSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTHFYP 230 (419)
T ss_dssp HHHHHHTTSCCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECCCCH
T ss_pred HHHHHhhccccCCCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhcCCCEEEEccccC
Confidence 9886 999999999884 78888888888888889888654 344 368999999999999999998865 4
Q ss_pred hhHHHHHhhC
Q psy18065 140 THISQFFRAV 149 (149)
Q Consensus 140 ~~~~~il~qA 149 (149)
+.+..+++|+
T Consensus 231 ~~~~~~~~~~ 240 (419)
T 3h5l_A 231 QDQALFMNQF 240 (419)
T ss_dssp HHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 6777888763
No 18
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.80 E-value=2.1e-19 Score=134.42 Aligned_cols=147 Identities=16% Similarity=0.121 Sum_probs=123.0
Q ss_pred HHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcC
Q psy18065 3 EATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLN 77 (149)
Q Consensus 3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~ 77 (149)
.+..++++. ++|.+||||.++..+.+++++++..+||+|++++. + . ...++|+||+.|++..++.++++++.++|
T Consensus 62 ~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g 141 (387)
T 3i45_A 62 VTAAQELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLP 141 (387)
T ss_dssp HHHHHHHHHHHCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhcCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcC
Confidence 455678877 58999999999999999999999999999998642 2 1 24568999999999999999999999999
Q ss_pred CcEEEEEeec-CcchhhHHHHHhCCCCC--CceEEEEe-cC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 78 WTKVAIVYEE-DNGLFKLQELVKTPPTL--KTEMYIRH-AN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 78 W~~v~vi~~~-~~~~~~l~~l~~~~~~~--~~~v~~~~-~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
|++|++||++ ++|....+.+.+.+++. |+++.... ++ ..|+...+++|++.++++|++.+....+..+++|+
T Consensus 142 ~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~ 219 (387)
T 3i45_A 142 ITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREG 219 (387)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHH
T ss_pred CCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHH
Confidence 9999999987 47777777777776665 77775544 33 36899999999999999999999888888888874
No 19
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=99.78 E-value=2e-18 Score=128.53 Aligned_cols=147 Identities=7% Similarity=0.008 Sum_probs=123.0
Q ss_pred HHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcC
Q psy18065 3 EATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLN 77 (149)
Q Consensus 3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~ 77 (149)
.+..+++++ ++|.+||||.++..+.++++++..+++|+|+++.. + . ...++++||+.|++..++.++++++..+|
T Consensus 60 ~~~~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g 139 (375)
T 3i09_A 60 ASKAREWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQG 139 (375)
T ss_dssp HHHHHHHHHHSCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcC
Confidence 455677887 89999999999999999999999999999998642 2 1 23468899999999999999999999999
Q ss_pred CcEEEEEeecC-cchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 78 WTKVAIVYEED-NGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 78 W~~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
|++|++|++++ +|....+.+.+.+++.|+++... .++ ..|+...+.++++.++++|++.+....+..+++|+
T Consensus 140 ~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~ 215 (375)
T 3i09_A 140 GKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAA 215 (375)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHH
T ss_pred CceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHH
Confidence 99999999874 67778888888777788887543 333 36899999999999999999988887888888763
No 20
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=99.77 E-value=1.2e-18 Score=130.08 Aligned_cols=147 Identities=4% Similarity=0.021 Sum_probs=122.4
Q ss_pred HHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC--C-CCcccEEEecCChhHHHHHHHHHHHhcC
Q psy18065 3 EATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE--L-NSKEFSVNLYPSQKLLNAAFKDVIRFLN 77 (149)
Q Consensus 3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~--~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~ 77 (149)
.+..+++++ ++|.+||||.++..+.+++.++...++|+|+++.. +. . ..++|+||+.|++..++.++++++.++|
T Consensus 62 ~~~~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g 141 (379)
T 3n0w_A 62 LSIAREWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKG 141 (379)
T ss_dssp HHHHHHHHHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcC
Confidence 445677776 89999999999999999999999999999998642 21 1 3468899999999999999999998899
Q ss_pred CcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 78 WTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 78 W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
|+++++|+++ ++|....+.+.+.+++.|+++... .++ ..|+...+++|+++++++|++.+....+..+++|+
T Consensus 142 ~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~ 217 (379)
T 3n0w_A 142 YKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFETQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQA 217 (379)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHH
T ss_pred CcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHH
Confidence 9999999987 468778888888777778887643 333 36899999999999999999988877788888764
No 21
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.76 E-value=3.5e-18 Score=126.61 Aligned_cols=147 Identities=10% Similarity=0.033 Sum_probs=121.9
Q ss_pred HHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC--CCCcccEEEecCChhHHHHHHHHHHHhcCCc
Q psy18065 3 EATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE--LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWT 79 (149)
Q Consensus 3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~--~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~ 79 (149)
.+..++++. ++|.+||||.++..+.++..++...++|+|+++.... .+..+++||+.|++..++.++++++..+||+
T Consensus 61 ~~~~~~li~~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 140 (368)
T 4eyg_A 61 KRLAQELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITERSPYIVRTSFTLAQSSIIIGDWAAKNGIK 140 (368)
T ss_dssp HHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccCCCCEEEecCChHHHHHHHHHHHHHcCCC
Confidence 345667776 7899999999999999999999999999999875321 2336889999999999999999999999999
Q ss_pred EEEEEeecC-cchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 80 KVAIVYEED-NGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 80 ~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
++++|++++ +|..+.+.+.+.+++.|+++... .++ ..|+...+++|++.++++|++.++...+..+++|+
T Consensus 141 ~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 214 (368)
T 4eyg_A 141 KVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQF 214 (368)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHH
T ss_pred EEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHH
Confidence 999999874 67777888888777778887543 333 36899999999999999999988888888888763
No 22
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.76 E-value=5.8e-18 Score=125.56 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=120.8
Q ss_pred HHHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC-C-CCCcccEEEecCChhHHHHHHHHHH-HhcCC
Q psy18065 3 EATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-E-LNSKEFSVNLYPSQKLLNAAFKDVI-RFLNW 78 (149)
Q Consensus 3 ~~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~-~-~~~~~~~~~~~p~~~~~~~ai~~ll-~~~~W 78 (149)
.+..++++.+ +|.+||||.++..+.+++.++...++|+|+++... . ....+++||+.|++..++.++++++ +++||
T Consensus 70 ~~~~~~l~~~~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~ 149 (366)
T 3td9_A 70 ANAAARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQGRKFVSRVCFIDPFQGAAMAVFAYKNLGA 149 (366)
T ss_dssp HHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTTTCSSEEESSCCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHhccCCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccCCCCCEEEEeCCcHHHHHHHHHHHHHhcCC
Confidence 4556778875 59999999999999999999999999999987532 1 2456889999999999999999988 67899
Q ss_pred cEEEEEee-c-CcchhhHHHHHhCCCCCCceEEEEecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 79 TKVAIVYE-E-DNGLFKLQELVKTPPTLKTEMYIRHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 79 ~~v~vi~~-~-~~~~~~l~~l~~~~~~~~~~v~~~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
+++++||. + +++....+.+.+.+++.|+++....++ ..|+...++++++.++++|++.++...+..+++|+
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 224 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQA 224 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHH
Confidence 99999986 3 467777777777777778887654354 36899999999999999999988888888888763
No 23
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.74 E-value=7.7e-18 Score=124.40 Aligned_cols=147 Identities=9% Similarity=0.073 Sum_probs=120.1
Q ss_pred HHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CCCCcccEEEecCChhHHHHHHHHHH-HhcCC
Q psy18065 3 EATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--ELNSKEFSVNLYPSQKLLNAAFKDVI-RFLNW 78 (149)
Q Consensus 3 ~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~~~~~~~~~~~p~~~~~~~ai~~ll-~~~~W 78 (149)
.+..+++++++|.+||||.++..+.++..++...++|+|++... + ....++++||+.|++..++.++++.+ +++||
T Consensus 59 ~~~~~~l~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 138 (356)
T 3ipc_A 59 ISVANKFVADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKD 138 (356)
T ss_dssp HHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHCCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCC
Confidence 34567888889999999999999999999999999999997643 2 22345889999999999999999954 67899
Q ss_pred cEEEEEeec-CcchhhHHHHHhCCCCCCceEEE-EecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 79 TKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYI-RHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 79 ~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~-~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
+++++|+++ +++..+.+.+.+.+++.|+++.. ..++ ..|+...++++++.+++.|++.++...+..+++|+
T Consensus 139 ~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 213 (356)
T 3ipc_A 139 AKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQA 213 (356)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred CEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHH
Confidence 999999987 46777788888777777877643 2333 36899999999999999999999888888888763
No 24
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=99.74 E-value=1.2e-17 Score=124.59 Aligned_cols=143 Identities=14% Similarity=0.056 Sum_probs=117.0
Q ss_pred HHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC--CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEE
Q psy18065 6 MCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE--LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVA 82 (149)
Q Consensus 6 ~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~--~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~ 82 (149)
.-+++. ++|.+|+||.+|..+.++++++...++|+|+++.... ....+|+||+.|++..+..+++++++..+|++++
T Consensus 64 a~~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~k~va 143 (371)
T 4f06_A 64 AQELIVKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEKSPYIVRTSFTMFQNTVPAAKVAKQKGATKVA 143 (371)
T ss_dssp HHHHHHTSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHhcCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhcccCCcceecccchhhhhhhhhhhhhhcCceEEE
Confidence 346665 6899999999999999999999999999999875322 2445899999999999999999999999999999
Q ss_pred EEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCc-hhHHHHHhh
Q psy18065 83 IVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTST-THISQFFRA 148 (149)
Q Consensus 83 vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~-~~~~~il~q 148 (149)
++|++ ++|....+.+.+.+++.|.++... .++ ..|+.+++.+|+++++++|++.+.. .....+++|
T Consensus 144 ii~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~ 214 (371)
T 4f06_A 144 IAVSDYGPGIDAETAFKKTFEAEGGKVVEAVRMPLSTTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKA 214 (371)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHH
T ss_pred EEcCCcccchhHHHHHHHHHHhcCCceEEEEecCcccccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHH
Confidence 99998 578777777777777778776543 344 3699999999999999999887754 455556554
No 25
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=99.73 E-value=1.5e-17 Score=123.37 Aligned_cols=146 Identities=8% Similarity=0.091 Sum_probs=120.8
Q ss_pred HHHHHHHhh-CCcEEEEcCCCCCcHHHHHH--hhcccCCCceeeccCCC--CCCcccEEEecCChhHHHHHHHHHHHhcC
Q psy18065 3 EATMCRQLQ-NGVQALFGPSDALLGPHVQS--ICEALDVPHMESRLDLE--LNSKEFSVNLYPSQKLLNAAFKDVIRFLN 77 (149)
Q Consensus 3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~--~~~~~~iP~is~~~~~~--~~~~~~~~~~~p~~~~~~~ai~~ll~~~~ 77 (149)
.+..+++++ ++|.+||||.++..+.++.. ++...+||+|+++.... .+ .+++||+.|++..++.++++++..+|
T Consensus 62 ~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~l~~~g 140 (364)
T 3lop_A 62 VRNVRDMARVDNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTT-DPLVFPIKASYQQEIDKMITALVTIG 140 (364)
T ss_dssp HHHHHHHHHHSCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS-CTTEECCSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc-CCcEEEeCCChHHHHHHHHHHHHHcC
Confidence 345667777 58999999999999999999 99999999999864321 12 68899999999999999999999999
Q ss_pred CcEEEEEeec-CcchhhHHHHHhCCCCCCceEEE-EecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 78 WTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYI-RHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 78 W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~-~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
|++|++|+++ +++..+.+.+.+.+++.|+++.. ..++ ..|+...++++++.++++|++.++...+..+++|+
T Consensus 141 ~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 216 (364)
T 3lop_A 141 VTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQY 216 (364)
T ss_dssp CCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHH
T ss_pred CceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHH
Confidence 9999999987 46777888888877777877643 2333 36899999999999999999988888888888763
No 26
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=99.72 E-value=2.8e-17 Score=123.09 Aligned_cols=146 Identities=12% Similarity=0.075 Sum_probs=120.2
Q ss_pred HHHHHHHh-hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh-cCCcE
Q psy18065 3 EATMCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF-LNWTK 80 (149)
Q Consensus 3 ~~~~c~~~-~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~-~~W~~ 80 (149)
.+..++++ +++|.+||| .++..+.++..++...+||+|+++........+++||+.|++..++.++++++.. +||++
T Consensus 65 ~~~~~~li~~~~V~~iiG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~ 143 (391)
T 3eaf_A 65 EEYYREFRDRYGVIAIIG-WGTADTEKLSDQVDTDKITYISASYSAKLLVKPFNFYPAPDYSTQACSGLAFLASEFGQGK 143 (391)
T ss_dssp HHHHHHHHHTTCCSEEEE-CCHHHHHHHHHHHHHHTCEEEESCCCGGGTTSTTEECSSCCHHHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHhhcCcEEEEE-cCcHHHHHHHHHHhhcCCeEEecccchhhcCCCcEEEeCCCHHHHHHHHHHHHHHhcCCCE
Confidence 34566788 678999999 6788888999999999999999764322125688999999999999999998866 79999
Q ss_pred EEEEee-c-CcchhhHHHHHhCCCCCCceEEEEe-cC--CCchHHHHHH--HHhCCCceEEEecCchhHHHHHhhC
Q psy18065 81 VAIVYE-E-DNGLFKLQELVKTPPTLKTEMYIRH-AN--PSTYRNVLRE--IRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 81 v~vi~~-~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~--~~d~~~~l~~--i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
|++|++ + ++|..+.+.+.+.+++.|+++.... ++ ..|+...+.+ |++.++++|++.++...+..+++|+
T Consensus 144 iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~ 219 (391)
T 3eaf_A 144 LALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAM 219 (391)
T ss_dssp EEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHH
T ss_pred EEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHH
Confidence 999998 6 4678888888888888898876533 43 2589999999 9999999999998888888888763
No 27
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.70 E-value=8.9e-17 Score=119.55 Aligned_cols=146 Identities=15% Similarity=0.114 Sum_probs=120.1
Q ss_pred HHHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC---C--CCCcccEEEecCChhHHHHHHHHHHHhc
Q psy18065 3 EATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDL---E--LNSKEFSVNLYPSQKLLNAAFKDVIRFL 76 (149)
Q Consensus 3 ~~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~---~--~~~~~~~~~~~p~~~~~~~ai~~ll~~~ 76 (149)
.+..++++++ +|.+||||.++..+.++..++...++|+|+++... . ....+++||+.|++..++.++++++..+
T Consensus 78 ~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (386)
T 3sg0_A 78 AQNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKT 157 (386)
T ss_dssp HHHHHHHHHTSCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhc
Confidence 3456777775 79999999999999999999999999999987522 1 2456889999999999999999999999
Q ss_pred CCcEEEEEeec-CcchhhHHHHHhCCCCCCceEEE-EecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065 77 NWTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYI-RHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA 148 (149)
Q Consensus 77 ~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~-~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q 148 (149)
||++|++|+++ +++..+.+.+.+.+++.|+++.. ..++ ..|+...++++++.+++.|++.++...+..+++|
T Consensus 158 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~ 233 (386)
T 3sg0_A 158 GAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKA 233 (386)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHH
T ss_pred CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 99999999987 46777888888777777877642 2333 3689999999999999999998887777777776
No 28
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.70 E-value=1.2e-16 Score=117.74 Aligned_cols=145 Identities=10% Similarity=0.079 Sum_probs=120.2
Q ss_pred HHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065 4 ATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV 81 (149)
Q Consensus 4 ~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v 81 (149)
+..++++++ +|.+||||.++..+..+..++...++|+|+++..+. ....++++|+.|++...+..+++++..+||+++
T Consensus 59 ~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~i 138 (362)
T 3snr_A 59 TNARRFVTESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPLPITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTV 138 (362)
T ss_dssp HHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCCCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHhccCceEEEcCCCcHHHHHHHHHHHHcCccEEEecCCccccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEE
Confidence 456677776 899999999998888999999999999999875431 345678999999999999999999999999999
Q ss_pred EEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065 82 AIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA 148 (149)
Q Consensus 82 ~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q 148 (149)
++|+++ +++..+.+.+.+.+++.|+++... .++ ..|+...+.++++.+++.|++.+....+..+++|
T Consensus 139 a~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~ 209 (362)
T 3snr_A 139 GYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGTAAALPQTT 209 (362)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHH
T ss_pred EEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 999987 467788888888777788886543 333 3689999999999999999888877778888776
No 29
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.70 E-value=1.3e-16 Score=117.88 Aligned_cols=147 Identities=12% Similarity=0.137 Sum_probs=120.2
Q ss_pred HHHHHHHh-hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC-CCCcccEEEecCChhHHHHHHHHHHHhcCCc
Q psy18065 3 EATMCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWT 79 (149)
Q Consensus 3 ~~~~c~~~-~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~ 79 (149)
.+..++++ +++|.+||||.++..+..+..++...++|+|+++.. +. ....++++|+.|++..++.++++++...||+
T Consensus 61 ~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 140 (358)
T 3hut_A 61 RTIARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNNAAWMIGDGFT 140 (358)
T ss_dssp HHHHHHHHHCTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSCTTEEESSCCGGGHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhccCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCCCeEEEecCChHHHHHHHHHHHHHcCCC
Confidence 34567788 678999999999988899999999999999998642 21 2233889999999999999999998878999
Q ss_pred EEEEEeecC-cchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 80 KVAIVYEED-NGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 80 ~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
+|++|+.++ ++..+.+.+.+.+++.|+++... .++ ..|+...++++++.+++.|++.++...+..+++++
T Consensus 141 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~ 214 (358)
T 3hut_A 141 SVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRAL 214 (358)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHH
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHH
Confidence 999999774 67788888888877788887543 333 36899999999999999999988887788887763
No 30
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.70 E-value=7.1e-17 Score=119.88 Aligned_cols=146 Identities=12% Similarity=0.030 Sum_probs=120.1
Q ss_pred HHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC---CC-CCcccEEEecCChhHHHHHHHHHHHhcCC
Q psy18065 4 ATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL---EL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNW 78 (149)
Q Consensus 4 ~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~---~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W 78 (149)
+...++++ ++|.+||||.++..+..+..++...++|+|+++... .. ...+++||+.|++...+.++++++..+||
T Consensus 72 ~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 151 (375)
T 4evq_A 72 ELTTKLIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGL 151 (375)
T ss_dssp HHHHCCCCCSCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCC
Confidence 34556666 489999999999999999999999999999987432 11 23688999999999999999999999999
Q ss_pred cEEEEEeecC-cchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 79 TKVAIVYEED-NGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 79 ~~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
++|++|++++ ++..+.+.+.+.+++.|+++... .++ ..|+...++++++.+++.|++.++...+..+++|+
T Consensus 152 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~ 226 (375)
T 4evq_A 152 KKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDY 226 (375)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHH
T ss_pred cEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHH
Confidence 9999999874 67788888888877788887543 333 36899999999999999999988888888888763
No 31
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.69 E-value=2.1e-16 Score=116.05 Aligned_cols=145 Identities=8% Similarity=0.080 Sum_probs=115.7
Q ss_pred HHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CCCCcccEEEecCChhHHHHHHHHHH-HhcCCc
Q psy18065 4 ATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--ELNSKEFSVNLYPSQKLLNAAFKDVI-RFLNWT 79 (149)
Q Consensus 4 ~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~~~~~~~~~~~p~~~~~~~ai~~ll-~~~~W~ 79 (149)
+..+++++++|.+||||.++..+.++..++...++|+|+++.. + ....+++++|+.|++..++..+++++ +++||+
T Consensus 60 ~~~~~l~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 139 (346)
T 1usg_A 60 AVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQ 139 (346)
T ss_dssp HHHHHHHHTTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCCEEEcCCCcHHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCC
Confidence 4456777789999999998888888899999999999998642 2 12235789999999999999999988 568999
Q ss_pred EEEEEeecC-cchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065 80 KVAIVYEED-NGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA 148 (149)
Q Consensus 80 ~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q 148 (149)
++++|+.++ ++..+.+.+.+.+++.|+++... .++ ..|+.+.+++|++.++++|++.+....+..++++
T Consensus 140 ~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~ 212 (346)
T 1usg_A 140 RIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQ 212 (346)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHH
Confidence 999999874 56677777777777778887543 343 3588999999999999999988876777777766
No 32
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=99.68 E-value=1.2e-16 Score=119.62 Aligned_cols=146 Identities=10% Similarity=0.132 Sum_probs=118.5
Q ss_pred HHHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC--C-CCcccEEEecCChhHHHHHHHHHHHh-cC
Q psy18065 3 EATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE--L-NSKEFSVNLYPSQKLLNAAFKDVIRF-LN 77 (149)
Q Consensus 3 ~~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~--~-~~~~~~~~~~p~~~~~~~ai~~ll~~-~~ 77 (149)
.+..++++++ +|.+||| .++..+.++..++...+||+|+++.... . ...+++||+.|++..++.++++++.. +|
T Consensus 64 ~~~~~~li~~~~V~~iig-~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g 142 (392)
T 3lkb_A 64 QRFFEEAVDRFKIPVFLS-YATGANLQLKPLIQELRIPTIPASMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKK 142 (392)
T ss_dssp HHHHHHHHHTTCCSCEEE-CCHHHHHHHHHHHHHHTCCEEESCCCGGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhcCcEEEEe-CCcHHHHHHHHHHHhCCceEEecccChhhccCCCCCceEecCCChHHHHHHHHHHHHHhCC
Confidence 3456778875 8999999 5777788899999999999999764321 1 34678999999999999999998865 79
Q ss_pred CcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 78 WTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-AN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 78 W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
|++|++|+++ ++|..+.+.+.+.+++.|+++.... ++ ..|+...++++++.+++.|++.++...+..+++|+
T Consensus 143 ~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~ 218 (392)
T 3lkb_A 143 GAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDA 218 (392)
T ss_dssp TCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHH
Confidence 9999999987 4677778888777777788875533 43 36899999999999999999999888888888763
No 33
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.68 E-value=2e-16 Score=117.94 Aligned_cols=135 Identities=7% Similarity=-0.023 Sum_probs=111.9
Q ss_pred hHHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC---CCCcccEEEecCChhHHHHHHHHHHHhc
Q psy18065 2 AEATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE---LNSKEFSVNLYPSQKLLNAAFKDVIRFL 76 (149)
Q Consensus 2 ~~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~---~~~~~~~~~~~p~~~~~~~ai~~ll~~~ 76 (149)
+.+..++++. ++|.+||||.+|..+.+++++++.+++|+|++.+. +. ...++|+||+.|++..+..+++.+++++
T Consensus 61 a~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~ 140 (374)
T 3n0x_A 61 SKAALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQ 140 (374)
T ss_dssp HHHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhcc
Confidence 3456788886 68999999999999999999999999999986542 21 1246899999999999999999888899
Q ss_pred CCcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cC--CCchHHHHHHHHhCC-----CceEEEec
Q psy18065 77 NWTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-AN--PSTYRNVLREIRQKE-----IFNLIIDT 137 (149)
Q Consensus 77 ~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~--~~d~~~~l~~i~~~~-----~~~iil~~ 137 (149)
+| ++++|+++ ++|....+.+.+.+++.|+++.... ++ ..|+..++++|++++ +++|++.+
T Consensus 141 ~~-~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~l~~i~~~~~~~~~~d~v~~~~ 209 (374)
T 3n0x_A 141 GV-TIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIW 209 (374)
T ss_dssp TE-EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCCCCHHHHHHHHHHHTTCSSEEEEEECC
T ss_pred CC-EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCCCCccHHHHHHHHHhcCCCCCCCCEEEEEe
Confidence 99 79999987 5788888888888888898886543 43 368999999999998 88888863
No 34
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.58 E-value=2.8e-14 Score=105.28 Aligned_cols=144 Identities=9% Similarity=0.096 Sum_probs=110.3
Q ss_pred HHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC-CCCcccEEEecCChhHHHHHHHHHHHhc-CC
Q psy18065 3 EATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE-LNSKEFSVNLYPSQKLLNAAFKDVIRFL-NW 78 (149)
Q Consensus 3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~-~W 78 (149)
.+..-+++. +++.+++||.+|..+.++++++...++|+|+++.. +. ....+|+||+.|++..+..+++.++... ++
T Consensus 64 ~~~a~~li~~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 143 (353)
T 4gnr_A 64 ASVTTNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQDYLFIGTFQDSFQGKIISNYVSEKLNA 143 (353)
T ss_dssp HHHHHHHHHTSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTTTCTTEEECSCCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhhCCceEEeccccCcccceehhhhhccCcceEeecccccccccCCccccccCCCcHHHHHHHHHHHHHhcCC
Confidence 344556775 56899999999999999999999999999998753 22 3456789999999999999999988655 45
Q ss_pred cEEEEEeecC--cchhhHHHHHhCCCCCCceEEE-EecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 79 TKVAIVYEED--NGLFKLQELVKTPPTLKTEMYI-RHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 79 ~~v~vi~~~~--~~~~~l~~l~~~~~~~~~~v~~-~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
++++++++++ ++....+.+.+.. |..+.. ..++ ..|+...+.+|++++++.|++.+....+..+++|+
T Consensus 144 ~~~~~~~~~~~~yg~~~~~~~~~~~---g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~ 216 (353)
T 4gnr_A 144 KKVVLYTDNASDYAKGIAKSFRESY---KGEIVADETFVAGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQA 216 (353)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHC---CSEEEEEEEECTTCCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHH
T ss_pred cEEEEEEcCchHHHHHHHHHHHHHc---CCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHH
Confidence 5555555543 5665556665543 445443 3343 36899999999999999999999988888898874
No 35
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=99.57 E-value=1.8e-14 Score=107.64 Aligned_cols=145 Identities=11% Similarity=-0.026 Sum_probs=114.1
Q ss_pred HHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEE
Q psy18065 4 ATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVA 82 (149)
Q Consensus 4 ~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~ 82 (149)
+..+++++ ++|.+|||+.++..+..+..++...++|+|+++........++++|+.|++...+..+++++...+|++|+
T Consensus 65 ~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia 144 (385)
T 1pea_A 65 LCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVV 144 (385)
T ss_dssp HHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHHTTCEEEECSCCCCCCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHhhCCcEEEECCCchHHHHHHHHHHHhcCceEEECCcccCccCCCCEEEecCChHHhHHHHHHHHHHccCcEEE
Confidence 44567775 78999999988877788889999999999997643211234678999999999999999999888999999
Q ss_pred EEeecC-cchhhHHHHHhCCCCCCceEEEE-ecC---C-CchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065 83 IVYEED-NGLFKLQELVKTPPTLKTEMYIR-HAN---P-STYRNVLREIRQKEIFNLIIDTSTTHISQFFRA 148 (149)
Q Consensus 83 vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~---~-~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q 148 (149)
+|+.++ ++..+.+.+.+.+++.|+++... .++ . .|+.+.+++|++.+++.|++.++...+..++++
T Consensus 145 ~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~ 216 (385)
T 1pea_A 145 FIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRA 216 (385)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHH
T ss_pred EEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHH
Confidence 999864 56677777777777778876543 232 2 478889999998888998887766677777766
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.44 E-value=3.2e-13 Score=99.46 Aligned_cols=140 Identities=12% Similarity=-0.001 Sum_probs=106.9
Q ss_pred HHHHhhCCcEEEEcCCCCCcHHHHHHhh-cccCCCceeeccCCC--CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEE
Q psy18065 6 MCRQLQNGVQALFGPSDALLGPHVQSIC-EALDVPHMESRLDLE--LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVA 82 (149)
Q Consensus 6 ~c~~~~~~v~aiiGp~~s~~~~~v~~~~-~~~~iP~is~~~~~~--~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~ 82 (149)
.-+++++||.+||||..+..+.++..++ ...++|+|+++.... .....|.||+.|. .++..+++.+...|+++++
T Consensus 49 ~~~l~~~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~~~~~~~~~~~~f~~~~~--~~~~~~a~~a~~~g~k~va 126 (325)
T 2h4a_A 49 IAQAKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNSRAIPQLCYYGLSPE--DEAESAANKMWNDGVRNPL 126 (325)
T ss_dssp HHHHHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCSSCCCCTTEEECCCCHH--HHHHHHHHHHHHTTCCSCE
T ss_pred HHHHHHCCCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCCccccCCCCeEEEECCHH--HHHHHHHHHHHHcCCCeEE
Confidence 3455678999999999999999999998 778999999775322 1233466665554 5788999988778999999
Q ss_pred EEeec-CcchhhHHHHHhCCCCCCceEEE-EecC-CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065 83 IVYEE-DNGLFKLQELVKTPPTLKTEMYI-RHAN-PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA 148 (149)
Q Consensus 83 vi~~~-~~~~~~l~~l~~~~~~~~~~v~~-~~~~-~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q 148 (149)
+++++ ++|....+.+.+.+++.|..+.. +.++ ..|+...|+++ +.+++.|++.+....+..+.+|
T Consensus 127 il~~~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~~~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~ 194 (325)
T 2h4a_A 127 VAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQEN-NSNTTALYAVASPTELAEXKGY 194 (325)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHS-TTCCCEEEECCCHHHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHHHHHHHcCCCcceeEecCCHHHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhh
Confidence 99987 57888888888887776665543 3343 36899999998 5788999998887777666554
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.37 E-value=2.3e-12 Score=94.50 Aligned_cols=141 Identities=10% Similarity=-0.079 Sum_probs=109.3
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhh-cccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSIC-EALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~-~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
+.+++|.+||||.+++.+.++.... ....+|+++.+........++.||+.+++..++..+++++...|++++++++++
T Consensus 54 ~~~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~ 133 (327)
T 3ckm_A 54 AKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNSRAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQ 133 (327)
T ss_dssp HHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTTCCCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEES
T ss_pred HHHcCCeEEEEccccccchhhHHHHHhccCceEeccCcCcccccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecC
Confidence 3457899999999988777766654 445566665443322234577899999999999999999988899999999998
Q ss_pred -CcchhhHHHHHhCCCCCCceEEE-EecCCCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065 88 -DNGLFKLQELVKTPPTLKTEMYI-RHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149 (149)
Q Consensus 88 -~~~~~~l~~l~~~~~~~~~~v~~-~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA 149 (149)
++|....+.+.+.+++.|..+.. ..++..+....+..++.++++.|++.+....+..+.+|+
T Consensus 134 ~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~ 197 (327)
T 3ckm_A 134 NDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNSNTTALYAVASPTELAEMKGYL 197 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHSCTTCCEEEECCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCeEEEEEECCCCchhhHHHHHhccCCcEEEEEcCHHHHHHHHHHH
Confidence 57888778888877777766543 345556777778889999999999999888888887763
No 38
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=97.00 E-value=0.045 Score=39.06 Aligned_cols=136 Identities=12% Similarity=-0.005 Sum_probs=76.9
Q ss_pred HHhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEEE
Q psy18065 8 RQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAIV 84 (149)
Q Consensus 8 ~~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~vi 84 (149)
.++..++.+||. |..+.........+...++|+|......... +....+.+.+...+...++.+... |-++++++
T Consensus 52 ~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i 129 (313)
T 2h3h_A 52 SFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDS--GRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIG 129 (313)
T ss_dssp HHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTS--CCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEE
T ss_pred HHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCCCCCc--ceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 445667877774 4444332223334556799999976432211 122345677777777788877665 99999999
Q ss_pred eec-C--cchhhHHHHHhCCCCCCceEEEEecCC---CchHHHHHHHHhCC--CceEEEecCchhHHHHH
Q psy18065 85 YEE-D--NGLFKLQELVKTPPTLKTEMYIRHANP---STYRNVLREIRQKE--IFNLIIDTSTTHISQFF 146 (149)
Q Consensus 85 ~~~-~--~~~~~l~~l~~~~~~~~~~v~~~~~~~---~d~~~~l~~i~~~~--~~~iil~~~~~~~~~il 146 (149)
... + ....+.+.+.+.+++.|+.+....... .+..+.+.++.++. .+.|+. ++...+..++
T Consensus 130 ~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~ 198 (313)
T 2h3h_A 130 TGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQA 198 (313)
T ss_dssp ESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEECSSCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHH
T ss_pred ECCCCCccHHHHHHHHHHHhcCCCCEEEEeecCCCCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHH
Confidence 865 2 245667777777766777654222211 23345555555443 344443 3333443333
No 39
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=96.68 E-value=0.042 Score=38.91 Aligned_cols=121 Identities=6% Similarity=-0.057 Sum_probs=73.2
Q ss_pred HHhhCCcEEEE-cCCCCCcHHHHHHhhcccCCCceeeccCCCC-CCcccEEEecCChhHHHHHHHHHHHhcC--CcEEEE
Q psy18065 8 RQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLEL-NSKEFSVNLYPSQKLLNAAFKDVIRFLN--WTKVAI 83 (149)
Q Consensus 8 ~~~~~~v~aii-Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~--W~~v~v 83 (149)
.++..++.+|| .|............+...+||+|........ ........+.+.....+...++.+...+ -+++++
T Consensus 56 ~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~ 135 (297)
T 3rot_A 56 SALATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALV 135 (297)
T ss_dssp HHHHTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhcCCCceEEE
Confidence 45566777766 4555444344445566789999998754321 1112334567777778888888776667 899999
Q ss_pred Eeec-C--cchhhHHHHHhCCCCCCceEEEEecCC--CchHHHHHHHHhC
Q psy18065 84 VYEE-D--NGLFKLQELVKTPPTLKTEMYIRHANP--STYRNVLREIRQK 128 (149)
Q Consensus 84 i~~~-~--~~~~~l~~l~~~~~~~~~~v~~~~~~~--~d~~~~l~~i~~~ 128 (149)
+... + ....+.+.+.+.+++.|+.+....... .+..+.+.++.+.
T Consensus 136 i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (297)
T 3rot_A 136 LNPQPGHIGLEKRAYGIKTILQDKGIFFEELDVGTDPNQVQSRVKSYFKI 185 (297)
T ss_dssp EESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHHH
T ss_pred EeCCCCcHHHHHHHHHHHHHHHhcCCeEEEeecCCChHHHHHHHHHHHHh
Confidence 9754 2 234666777776666677664433221 2334555554433
No 40
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=96.63 E-value=0.071 Score=36.94 Aligned_cols=98 Identities=8% Similarity=-0.026 Sum_probs=63.4
Q ss_pred HhhCCcEEEEcCCCC-CcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 9 QLQNGVQALFGPSDA-LLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s-~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
+...++.++|-.... .....+ ..+...++|++..+....... .-.+...+...+...++.+...|-++++++...
T Consensus 54 l~~~~vdgiIi~~~~~~~~~~~-~~~~~~~iPvV~~~~~~~~~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~ 129 (272)
T 3o74_A 54 FRARRCDALFVASCLPPEDDSY-RELQDKGLPVIAIDRRLDPAH---FCSVISDDRDASRQLAASLLSSAPRSIALIGAR 129 (272)
T ss_dssp HHHTTCSEEEECCCCCSSCCHH-HHHHHTTCCEEEESSCCCTTT---CEEEEECHHHHHHHHHHHHHTTCCSEEEEEEEC
T ss_pred HHHcCCCEEEEecCccccHHHH-HHHHHcCCCEEEEccCCCccc---cCEEEEchHHHHHHHHHHHHHCCCcEEEEEecC
Confidence 345667776654332 222233 345567999998775432222 234566777777888888877899999999865
Q ss_pred -C--cchhhHHHHHhCCCCCCceEEE
Q psy18065 88 -D--NGLFKLQELVKTPPTLKTEMYI 110 (149)
Q Consensus 88 -~--~~~~~l~~l~~~~~~~~~~v~~ 110 (149)
+ ....+.+.+.+.+++.|+....
T Consensus 130 ~~~~~~~~R~~gf~~~l~~~~~~~~~ 155 (272)
T 3o74_A 130 PELSVSQARAGGFDEALQGYTGEVRR 155 (272)
T ss_dssp TTSHHHHHHHHHHHHHTTTCCSEEEE
T ss_pred CCCccHHHHHHHHHHHHHHcCCChhe
Confidence 3 2456778888888888876543
No 41
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=96.01 E-value=0.19 Score=34.81 Aligned_cols=100 Identities=11% Similarity=-0.012 Sum_probs=65.0
Q ss_pred HHhhCC-cEEEEcCC-CCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc----CCcEE
Q psy18065 8 RQLQNG-VQALFGPS-DALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL----NWTKV 81 (149)
Q Consensus 8 ~~~~~~-v~aiiGp~-~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~----~W~~v 81 (149)
.++..+ +.+||-.. .+.........+...++|++..+...... .+...+.+.+...+...++.+... |-+++
T Consensus 53 ~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i 130 (276)
T 3ksm_A 53 YHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAGD--AHQGLVATDNYAAGQLAARALLATLDLSKERNI 130 (276)
T ss_dssp HHHHHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSSS--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred HHHHhCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCCCCC--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceE
Confidence 445566 77777544 33334444455677799999987543211 222346677777888888877666 89999
Q ss_pred EEEeec-C--cchhhHHHHHhCCCCC-CceEE
Q psy18065 82 AIVYEE-D--NGLFKLQELVKTPPTL-KTEMY 109 (149)
Q Consensus 82 ~vi~~~-~--~~~~~l~~l~~~~~~~-~~~v~ 109 (149)
+++... + ....+.+.+.+.+++. |+.+.
T Consensus 131 ~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~ 162 (276)
T 3ksm_A 131 ALLRLRAGNASTDQREQGFLDVLRKHDKIRII 162 (276)
T ss_dssp EECBCCTTCHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred EEEEcCCCchhHHHHHHHHHHHHHhCCCcEEE
Confidence 999754 2 2456777777777666 76654
No 42
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=95.93 E-value=0.24 Score=34.63 Aligned_cols=137 Identities=9% Similarity=-0.014 Sum_probs=72.2
Q ss_pred HHhhCCcEEEEcCCC-CCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc------CCcE
Q psy18065 8 RQLQNGVQALFGPSD-ALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL------NWTK 80 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~-s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~------~W~~ 80 (149)
.+...++.++|.... ..........+...++|++.......... .+.+.+.+.+...+...++.+... |.++
T Consensus 53 ~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~-~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~ 131 (290)
T 2fn9_A 53 AIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINARG-LAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKE 131 (290)
T ss_dssp HHHHTTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSCCSCSS-SSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSC
T ss_pred HHHHcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCCCCCC-ceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccc
Confidence 344567888776433 22222223334567999998764322111 111226667766777777776555 8899
Q ss_pred --EEEEeec-C--cchhhHHHHHhCCCCC-CceEEEEecCC---CchHHHHHHHHhC--CCceEEEecCchhHHHHH
Q psy18065 81 --VAIVYEE-D--NGLFKLQELVKTPPTL-KTEMYIRHANP---STYRNVLREIRQK--EIFNLIIDTSTTHISQFF 146 (149)
Q Consensus 81 --v~vi~~~-~--~~~~~l~~l~~~~~~~-~~~v~~~~~~~---~d~~~~l~~i~~~--~~~~iil~~~~~~~~~il 146 (149)
++++... + ....+.+.+.+.+++. |+.+....... .+-.+.+.++.+. ..+.|+ .++...+..++
T Consensus 132 i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~~d~~a~g~~ 207 (290)
T 2fn9_A 132 IPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIW-CGNDAMALGAM 207 (290)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHH
T ss_pred eeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEeccCCCCHHHHHHHHHHHHHhCCCCcEEE-ECCchHHHHHH
Confidence 6666543 2 2356677777776666 76543211111 2233455554433 344444 33444444444
No 43
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=95.81 E-value=0.12 Score=36.14 Aligned_cols=98 Identities=10% Similarity=0.040 Sum_probs=58.3
Q ss_pred HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
.+.+.++.+||..........+..+....++|+|..+...... ++...+.+.+...+..+++.+...|-++++++...
T Consensus 58 ~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~ 135 (289)
T 1dbq_A 58 MMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKA--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGP 135 (289)
T ss_dssp HHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECSSCCS--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred HHHhCCCCEEEEEeccCCHHHHHHHHhccCCCEEEEccCCCcc--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 3445678887753332222233333333689999987533211 22235667777778888888877799999999764
Q ss_pred -C--cchhhHHHHHhCCCCCCce
Q psy18065 88 -D--NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 88 -~--~~~~~l~~l~~~~~~~~~~ 107 (149)
+ ....+.+.+.+.+++.|+.
T Consensus 136 ~~~~~~~~R~~g~~~~l~~~g~~ 158 (289)
T 1dbq_A 136 LERNTGAGRLAGFMKAMEEAMIK 158 (289)
T ss_dssp ------CHHHHHHHHHHHHTTCC
T ss_pred CccccHHHHHHHHHHHHHHCCCC
Confidence 2 3456666666655555544
No 44
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=95.61 E-value=0.3 Score=34.20 Aligned_cols=132 Identities=8% Similarity=-0.040 Sum_probs=73.2
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED 88 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~ 88 (149)
+.+.++.+||..........+..+ . .++|+|..+....... ...+.+.+...+...++.+...|-++++++....
T Consensus 60 l~~~~vdgiI~~~~~~~~~~~~~l-~-~~iPvV~~~~~~~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 134 (285)
T 3c3k_A 60 LSGKMVDGVITMDALSELPELQNI-I-GAFPWVQCAEYDPLST---VSSVSIDDVAASEYVVDQLVKSGKKRIALINHDL 134 (285)
T ss_dssp HHTTCCSEEEECCCGGGHHHHHHH-H-TTSSEEEESSCCTTSS---SCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCT
T ss_pred HHhCCCCEEEEeCCCCChHHHHHH-h-cCCCEEEEccccCCCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 345678888765433333344444 4 8999999864332112 2345666666777778877667999999998652
Q ss_pred ---cchhhHHHHHhCCCCCCceEEE--EecCCCchHHHHHH--HHhCC--CceEEEecCchhHHHHH
Q psy18065 89 ---NGLFKLQELVKTPPTLKTEMYI--RHANPSTYRNVLRE--IRQKE--IFNLIIDTSTTHISQFF 146 (149)
Q Consensus 89 ---~~~~~l~~l~~~~~~~~~~v~~--~~~~~~d~~~~l~~--i~~~~--~~~iil~~~~~~~~~il 146 (149)
....+.+.+.+.+++.|+.+.+ ...+..+-.+.+.+ +.+.. .+.|+ .++...+..++
T Consensus 135 ~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~ 200 (285)
T 3c3k_A 135 AYQYAQHRESGYLNRLKFHGLDYSRISYAENLDYMAGKLATFSLLKSAVKPDAIF-AISDVLAAGAI 200 (285)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCCCCEEEECSSSSHHHHHHHHHHHHSSSSCCSEEE-ESSHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCCceEeecCCChHHHHHHHHHHHHHcCCCCCeEEE-ECCHHHHHHHH
Confidence 2345556665554444443221 12223444556666 55543 44444 33444444333
No 45
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=95.60 E-value=0.11 Score=36.33 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=59.8
Q ss_pred HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
.+.+.++.+||..........+..+....++|++..+...... . ...+.+.+...+...++.+...|.++++++...
T Consensus 72 ~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~--~-~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~ 148 (296)
T 3brq_A 72 YLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKN--S-SHSVWCDHKQTSFNAVAELINAGHQEIAFLTGS 148 (296)
T ss_dssp HHHHTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESCCCSSS--G-GGEECCCHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred HHHhcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEccccCCC--C-CCEEEEchHHHHHHHHHHHHHCCCceEEEEcCC
Confidence 3445678888764443333444443332799999976433211 1 234566666667777887766799999999865
Q ss_pred -C--cchhhHHHHHhCCCCCCce
Q psy18065 88 -D--NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 88 -~--~~~~~l~~l~~~~~~~~~~ 107 (149)
+ .+..+.+.+.+.+++.|+.
T Consensus 149 ~~~~~~~~R~~gf~~~l~~~g~~ 171 (296)
T 3brq_A 149 MDSPTSIERLAGYKDALAQHGIA 171 (296)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCccHHHHHHHHHHHHHHcCCC
Confidence 2 2445666666665555654
No 46
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=95.44 E-value=0.2 Score=35.33 Aligned_cols=99 Identities=7% Similarity=-0.095 Sum_probs=59.9
Q ss_pred HHhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEEE
Q psy18065 8 RQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAIV 84 (149)
Q Consensus 8 ~~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~vi 84 (149)
.+...++.+||- |............+...++|+|......... +....+.+.+...+...++.+... |-++++++
T Consensus 56 ~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i 133 (305)
T 3g1w_A 56 QAIAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPDS--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVI 133 (305)
T ss_dssp HHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTS--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHhCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 344567777664 4333322333344556799999987533211 112345677777888888877766 99999999
Q ss_pred eecCc--chhhHHHHHhCCCCCCceE
Q psy18065 85 YEEDN--GLFKLQELVKTPPTLKTEM 108 (149)
Q Consensus 85 ~~~~~--~~~~l~~l~~~~~~~~~~v 108 (149)
...+. ...+.+.+.+.+++.|..+
T Consensus 134 ~~~~~~~~~~R~~gf~~~l~~~~~~~ 159 (305)
T 3g1w_A 134 TLPNQLNHQERTTGFKETLEAEFPAI 159 (305)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHHCTTE
T ss_pred eCCCcccHHHHHHHHHHHHHhhCCCC
Confidence 85432 3456666666655444433
No 47
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=95.35 E-value=0.45 Score=33.37 Aligned_cols=97 Identities=10% Similarity=-0.008 Sum_probs=60.2
Q ss_pred HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
.+...++.+||..........+...+...++|++......... . ...+...+...+...++.+...|.++++++...
T Consensus 71 ~l~~~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~-~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~ 147 (293)
T 2iks_A 71 HLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDRE--H-FTSVVGADQDDAEMLAEELRKFPAETVLYLGAL 147 (293)
T ss_dssp HHHHTTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEESCCCTT--T-CEEEEECHHHHHHHHHHHHHTSCCSSEEEEEEC
T ss_pred HHHHcCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEECCccCcC--C-CCEEEecCHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 3445678877754332222222233556789999876532211 1 234666776677778887777799999999865
Q ss_pred -C--cchhhHHHHHhCCCCCCce
Q psy18065 88 -D--NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 88 -~--~~~~~l~~l~~~~~~~~~~ 107 (149)
+ ....+.+.+.+.+++.|..
T Consensus 148 ~~~~~~~~R~~Gf~~~l~~~g~~ 170 (293)
T 2iks_A 148 PELSVSFLREQGFRTAWKDDPRE 170 (293)
T ss_dssp TTSHHHHHHHHHHHHHHTTCCCC
T ss_pred cccccHHHHHHHHHHHHHHcCCC
Confidence 3 2356677777776666653
No 48
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=95.31 E-value=0.18 Score=36.31 Aligned_cols=96 Identities=15% Similarity=0.078 Sum_probs=63.4
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE- 87 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~- 87 (149)
+...++.++|-.........+...+...++|++..+........+ .+...+..-+...++.+...|-++++++...
T Consensus 115 l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 191 (338)
T 3dbi_A 115 LLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSH---SVWCDHKQTSFNAVAELINAGHQEIAFLTGSM 191 (338)
T ss_dssp HHHTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSSSGGG---EECBCHHHHHHHHHHHHHHTTCCSEEEECCCT
T ss_pred HHhCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCCCCCC---EEEEChHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 445678887765444445566777888899999877543222222 3566766677777888877899999999764
Q ss_pred C--cchhhHHHHHhCCCCCCce
Q psy18065 88 D--NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 88 ~--~~~~~l~~l~~~~~~~~~~ 107 (149)
+ ....+.+.+.+.+++.|+.
T Consensus 192 ~~~~~~~R~~Gf~~al~~~g~~ 213 (338)
T 3dbi_A 192 DSPTSIERLAGYKDALAQHGIA 213 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCccHHHHHHHHHHHHHHCCCC
Confidence 2 2345666666665555654
No 49
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=95.28 E-value=0.21 Score=35.05 Aligned_cols=127 Identities=6% Similarity=-0.052 Sum_probs=71.5
Q ss_pred HhhCCcEEEEcCCC-CCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCC--cEEEEEe
Q psy18065 9 QLQNGVQALFGPSD-ALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNW--TKVAIVY 85 (149)
Q Consensus 9 ~~~~~v~aiiGp~~-s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W--~~v~vi~ 85 (149)
+...++.+||--.. ..........+...++|+|......... ...-.+.+.....+...++.+...|- ++++++.
T Consensus 65 l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~ 142 (304)
T 3gbv_A 65 VIEEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDA--PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFR 142 (304)
T ss_dssp HHTTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCCTTS--CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEE
T ss_pred HHhcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCCCCC--CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 44567777764433 3223333444566799999987533211 11245667777788888888877777 9999997
Q ss_pred ec-----C--cchhhHHHHHhCCCCCCceEEE--E---ecCCCchHHHHHHHHhC--CCceEEEec
Q psy18065 86 EE-----D--NGLFKLQELVKTPPTLKTEMYI--R---HANPSTYRNVLREIRQK--EIFNLIIDT 137 (149)
Q Consensus 86 ~~-----~--~~~~~l~~l~~~~~~~~~~v~~--~---~~~~~d~~~~l~~i~~~--~~~~iil~~ 137 (149)
.. + ....+.+.+.+.+++.|..+.. . ..+..+-.+.+.++.++ ..+.|+...
T Consensus 143 ~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 208 (304)
T 3gbv_A 143 KIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFN 208 (304)
T ss_dssp EEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESS
T ss_pred ecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 32 1 2345666666665554433222 1 12223445555555443 344554433
No 50
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=95.20 E-value=0.55 Score=33.55 Aligned_cols=99 Identities=6% Similarity=0.056 Sum_probs=59.9
Q ss_pred HHhhCCcEEEEcCCCCCcH-HHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEEE
Q psy18065 8 RQLQNGVQALFGPSDALLG-PHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAIV 84 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~-~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~vi 84 (149)
.+++.++.+||........ ......+...++|+|......... +....+.+.+...+...++.+... |.++++++
T Consensus 57 ~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i 134 (325)
T 2x7x_A 57 YFMDEGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILSD--KYTAYIGADNYEIGRSVGNYIASSLKGKGNIVEL 134 (325)
T ss_dssp HHHHTTCSEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCCSSS--CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred HHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEeCCCCCCc--ceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEE
Confidence 3456778888865443221 122333455789999876432211 122345667766777777766543 89999999
Q ss_pred eec-C--cchhhHHHHHhCCCCC-CceE
Q psy18065 85 YEE-D--NGLFKLQELVKTPPTL-KTEM 108 (149)
Q Consensus 85 ~~~-~--~~~~~l~~l~~~~~~~-~~~v 108 (149)
... + ....+.+.+.+.+++. |+.+
T Consensus 135 ~~~~~~~~~~~R~~Gf~~al~~~pg~~~ 162 (325)
T 2x7x_A 135 TGLSGSTPAMERHQGFMAAISKFPDIKL 162 (325)
T ss_dssp ESCTTSHHHHHHHHHHHHHHHTCTEEEE
T ss_pred ECCCCCccHHHHHHHHHHHHHhCCCCEE
Confidence 864 2 2346667777766566 6654
No 51
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=95.10 E-value=0.55 Score=33.01 Aligned_cols=99 Identities=9% Similarity=0.037 Sum_probs=60.5
Q ss_pred hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-C
Q psy18065 10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-D 88 (149)
Q Consensus 10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-~ 88 (149)
...++.++|--....... ....+...++|+|..+......... ...+...+..-+...++.+...|-++++++... +
T Consensus 65 ~~~~vdGiI~~~~~~~~~-~~~~l~~~~iPvV~i~~~~~~~~~~-~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~ 142 (295)
T 3hcw_A 65 KQRMVDAFILLYSKENDP-IKQMLIDESMPFIVIGKPTSDIDHQ-FTHIDNDNILASENLTRHVIEQGVDELIFITEKGN 142 (295)
T ss_dssp HTTCCSEEEESCCCTTCH-HHHHHHHTTCCEEEESCCCSSGGGG-SCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSC
T ss_pred HhCCcCEEEEcCcccChH-HHHHHHhCCCCEEEECCCCccccCC-ceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCcc
Confidence 346777766433322222 3334566799999987533211101 234556666667777887766799999999865 3
Q ss_pred --cchhhHHHHHhCCCCCCceEEE
Q psy18065 89 --NGLFKLQELVKTPPTLKTEMYI 110 (149)
Q Consensus 89 --~~~~~l~~l~~~~~~~~~~v~~ 110 (149)
....+.+.+.+.+++.|+.+..
T Consensus 143 ~~~~~~R~~Gf~~al~~~g~~~~~ 166 (295)
T 3hcw_A 143 FEVSKDRIQGFETVASQFNLDYQI 166 (295)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred chhHHHHHHHHHHHHHHcCCCeeE
Confidence 2456677777776667776543
No 52
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=95.03 E-value=0.48 Score=33.80 Aligned_cols=93 Identities=12% Similarity=-0.019 Sum_probs=54.2
Q ss_pred HHhhCCcEEEE-cCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh---cCCcEEEE
Q psy18065 8 RQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF---LNWTKVAI 83 (149)
Q Consensus 8 ~~~~~~v~aii-Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~---~~W~~v~v 83 (149)
.++.+++.+|| .|..+.....+...+...+||+|.+........ ...+-........+...++.+.. .|-+++++
T Consensus 55 ~li~~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~d~~~~~~~-~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~ 133 (316)
T 1tjy_A 55 NFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPEC-RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAF 133 (316)
T ss_dssp HHHHTTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCCGGG-CSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred HHHHcCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEecCCCCCCC-ceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEE
Confidence 45567887754 565554433444456678999999864332111 12222256666667777776644 46889999
Q ss_pred Eeec-C--cchhhHHHHHhCC
Q psy18065 84 VYEE-D--NGLFKLQELVKTP 101 (149)
Q Consensus 84 i~~~-~--~~~~~l~~l~~~~ 101 (149)
+... + ....+.+.+.+.+
T Consensus 134 i~g~~~~~~~~~r~~g~~~~l 154 (316)
T 1tjy_A 134 FYSSPTVTDQNQWVKEAKAKI 154 (316)
T ss_dssp EESCSSCHHHHHHHHHHHHHH
T ss_pred EEcCCCChhHHHHHHHHHHHH
Confidence 9754 2 2345555555544
No 53
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=94.93 E-value=0.6 Score=32.56 Aligned_cols=119 Identities=10% Similarity=0.106 Sum_probs=67.6
Q ss_pred HHhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh-c-CCc-----
Q psy18065 8 RQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF-L-NWT----- 79 (149)
Q Consensus 8 ~~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~-~-~W~----- 79 (149)
.+...++.+||- |............+...++|+|..+...... +....+.+.....+...++.+.. + |-+
T Consensus 59 ~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~ 136 (293)
T 3l6u_A 59 EFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRSD--AVVSSITSNNQMIGEQLASYIKNELIKQTGRSTG 136 (293)
T ss_dssp HHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCCT--TCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCE
T ss_pred HHHHcCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCCC--cceeEEecCHHHHHHHHHHHHHHHhccCCCCCCc
Confidence 344566666654 3333332233344556799999987533211 12345666776677777776654 4 545
Q ss_pred EEEEEeec-C--cchhhHHHHHhCCCCC-CceEEEEecCC---CchHHHHHHHHhC
Q psy18065 80 KVAIVYEE-D--NGLFKLQELVKTPPTL-KTEMYIRHANP---STYRNVLREIRQK 128 (149)
Q Consensus 80 ~v~vi~~~-~--~~~~~l~~l~~~~~~~-~~~v~~~~~~~---~d~~~~l~~i~~~ 128 (149)
+++++... + ....+.+.+.+.+++. |+.+....... .+-.+.+.++.+.
T Consensus 137 ~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (293)
T 3l6u_A 137 RIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQVIDS 192 (293)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHHHHHHHHHHHHh
Confidence 99999754 2 2456777787777776 77654332222 2334455555444
No 54
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=94.77 E-value=0.4 Score=33.24 Aligned_cols=94 Identities=9% Similarity=-0.014 Sum_probs=53.8
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE- 87 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~- 87 (149)
+...++.+||-.. .....+...+...++|+|..+...... . .+.+.+...+...++.+...|-++++++...
T Consensus 60 l~~~~~dgiIi~~--~~~~~~~~~l~~~~iPvV~~~~~~~~~--~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~ 132 (277)
T 3e61_A 60 FVSHNCTGMISTA--FNENIIENTLTDHHIPFVFIDRINNEH--N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENL 132 (277)
T ss_dssp HHHTTCSEEEECG--GGHHHHHHHHHHC-CCEEEGGGCC--------------HHHHHHHHHHHHHHTTCCSEEEEESCT
T ss_pred HHhCCCCEEEEec--CChHHHHHHHHcCCCCEEEEeccCCCC--C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCC
Confidence 3456777776543 223333314566799999987543211 1 5667777778888888877899999999865
Q ss_pred C--cchhhHHHHHhCCCCCCceEE
Q psy18065 88 D--NGLFKLQELVKTPPTLKTEMY 109 (149)
Q Consensus 88 ~--~~~~~l~~l~~~~~~~~~~v~ 109 (149)
+ ....+.+.+.+.+++.|+.+.
T Consensus 133 ~~~~~~~R~~gf~~~l~~~~~~~~ 156 (277)
T 3e61_A 133 LIDAFHQRVQGIKYILDQQRIDYK 156 (277)
T ss_dssp TSHHHHHHHHHHHHHHHC---CEE
T ss_pred CCccHHHHHHHHHHHHHHcCCCcc
Confidence 2 234667777777666676554
No 55
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=94.77 E-value=0.09 Score=36.88 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=57.9
Q ss_pred HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
.+...++.++|..........+..+ .++|+|..+...... ....+.+.+...+...++.+...|-++++++...
T Consensus 58 ~l~~~~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~~~~~---~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~ 131 (288)
T 2qu7_A 58 TFVSQNVSAIILVPVKSKFQMKREW---LKIPIMTLDRELEST---SLPSITVDNEEAAYIATKRVLESTCKEVGLLLAN 131 (288)
T ss_dssp HHHHTTEEEEEECCSSSCCCCCGGG---GGSCEEEESCCCSSC---CCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECC
T ss_pred HHHHcCccEEEEecCCCChHHHHHh---cCCCEEEEecccCCC---CCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecC
Confidence 3446778888865443222223333 789999876533211 1235566777778888888877799999999864
Q ss_pred -C--cchhhHHHHHhCCCCCCce
Q psy18065 88 -D--NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 88 -~--~~~~~l~~l~~~~~~~~~~ 107 (149)
+ ....+.+.+.+.+++.|+.
T Consensus 132 ~~~~~~~~R~~gf~~~l~~~g~~ 154 (288)
T 2qu7_A 132 PNISTTIGRKNGYNKAISEFDLN 154 (288)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC
Confidence 3 2345666666655445543
No 56
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=94.68 E-value=0.7 Score=32.15 Aligned_cols=98 Identities=3% Similarity=-0.032 Sum_probs=60.6
Q ss_pred HHhhCCcEEEEcCCCCCcH-HHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh-cC-CcEEEEE
Q psy18065 8 RQLQNGVQALFGPSDALLG-PHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF-LN-WTKVAIV 84 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~-~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~-~~-W~~v~vi 84 (149)
.+.+.++.++|........ ......+...++|+|..+..... .+....+.+.+...+...++.+.. .| -++++++
T Consensus 60 ~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~--~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i 137 (289)
T 3brs_A 60 EAIKRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQ--DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVI 137 (289)
T ss_dssp HHHHTCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEESSCCSS--CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred HHHHhCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEECCCCCC--CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEE
Confidence 3445678887764433222 12333455679999987643221 122345677777777878887755 46 9999999
Q ss_pred eec-C--cchhhHHHHHhCCCCCCce
Q psy18065 85 YEE-D--NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 85 ~~~-~--~~~~~l~~l~~~~~~~~~~ 107 (149)
... + ....+.+.+.+.+++.|..
T Consensus 138 ~~~~~~~~~~~R~~gf~~~l~~~g~~ 163 (289)
T 3brs_A 138 SFVKNSKTAMDREEGLKIGLSDDSNK 163 (289)
T ss_dssp ESCTTSHHHHHHHHHHHHHHGGGGGG
T ss_pred ECCCCCccHHHHHHHHHHHHHhCCCc
Confidence 864 3 2356677777766666654
No 57
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=94.57 E-value=0.73 Score=31.92 Aligned_cols=92 Identities=9% Similarity=0.029 Sum_probs=61.0
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED 88 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~ 88 (149)
+...++.+||-..... . .....+...++|+|..+........ -.+......-+...++.+...|-++++++....
T Consensus 59 l~~~~vdgiIi~~~~~-~-~~~~~l~~~~iPvV~i~~~~~~~~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 133 (276)
T 3jy6_A 59 IGSRGFDGLILQSFSN-P-QTVQEILHQQMPVVSVDREMDACPW---PQVVTDNFEAAKAATTAFRQQGYQHVVVLTSEL 133 (276)
T ss_dssp HHTTTCSEEEEESSCC-H-HHHHHHHTTSSCEEEESCCCTTCSS---CEEECCHHHHHHHHHHHHHTTTCCEEEEEEECS
T ss_pred HHhCCCCEEEEecCCc-H-HHHHHHHHCCCCEEEEecccCCCCC---CEEEEChHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 3455677766544433 3 3444466689999998753322222 245667777788888888878999999998753
Q ss_pred --c--chhhHHHHHhCCCCCC
Q psy18065 89 --N--GLFKLQELVKTPPTLK 105 (149)
Q Consensus 89 --~--~~~~l~~l~~~~~~~~ 105 (149)
. ...+.+.+.+.+++.+
T Consensus 134 ~~~~~~~~R~~gf~~~l~~~~ 154 (276)
T 3jy6_A 134 ELSRTRQERYRGILAAAQDVD 154 (276)
T ss_dssp TTCHHHHHHHHHHHTTCSEEE
T ss_pred CCCchHHHHHHHHHHHHHhCC
Confidence 2 2567788888877664
No 58
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=94.40 E-value=0.36 Score=34.24 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=69.4
Q ss_pred HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeecc-CCCC--------CCcccEEEecCChhHHHHHHHHHHHhc--
Q psy18065 8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRL-DLEL--------NSKEFSVNLYPSQKLLNAAFKDVIRFL-- 76 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~-~~~~--------~~~~~~~~~~p~~~~~~~ai~~ll~~~-- 76 (149)
.+.++++.+||..... ....+.. ...++|+|..+. .+.. ..........-.. .....++++...
T Consensus 64 ~l~~~~vDgII~~~~~-~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~~~--~~~~~~~~l~~~~P 138 (302)
T 2qh8_A 64 QFVGENPDVLVGIATP-TAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLS--PVEQHVELIKEILP 138 (302)
T ss_dssp HHHHTCCSEEEEESHH-HHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCC--CHHHHHHHHHHHST
T ss_pred HHHhCCCCEEEECChH-HHHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEECCc--CHHHHHHHHHHhCC
Confidence 3446678888864322 1222222 267899988753 2210 0112222222111 134455666555
Q ss_pred CCcEEEEEeecCc--chhhHHHHHhCCCCCCceEEEEecC-CCchHHHHHHHHhCCCceEEEe
Q psy18065 77 NWTKVAIVYEEDN--GLFKLQELVKTPPTLKTEMYIRHAN-PSTYRNVLREIRQKEIFNLIID 136 (149)
Q Consensus 77 ~W~~v~vi~~~~~--~~~~l~~l~~~~~~~~~~v~~~~~~-~~d~~~~l~~i~~~~~~~iil~ 136 (149)
|.+++++++.... +..+++.+.+.+++.|+.+...... .++..+.++++.. ..+.|++.
T Consensus 139 g~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~-~~dai~~~ 200 (302)
T 2qh8_A 139 NVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAE-KSDVIYAL 200 (302)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHGG-GCSEEEEC
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHHHhc-cCCEEEEC
Confidence 9999999997642 4566777777766778776544332 3567777887764 45555543
No 59
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=94.36 E-value=0.88 Score=31.93 Aligned_cols=93 Identities=12% Similarity=-0.033 Sum_probs=58.0
Q ss_pred hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC-c
Q psy18065 11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED-N 89 (149)
Q Consensus 11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~-~ 89 (149)
..++.+||--........+ ..+...++|+|..+....... .-.+...+..-+...++.+...|-++++++.... .
T Consensus 63 ~~~vdGiIi~~~~~~~~~~-~~l~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~ 138 (294)
T 3qk7_A 63 TRRVDALIVAHTQPEDFRL-QYLQKQNFPFLALGRSHLPKP---YAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARI 138 (294)
T ss_dssp HTCCSEEEECSCCSSCHHH-HHHHHTTCCEEEESCCCCSSC---CEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCC
T ss_pred cCCCCEEEEeCCCCChHHH-HHHHhCCCCEEEECCCCCCCC---CCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCccc
Confidence 4567776644332222333 345667999999875432222 2346667767777888888778999999998653 2
Q ss_pred --chhhHHHHHhCCCCCCce
Q psy18065 90 --GLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 90 --~~~~l~~l~~~~~~~~~~ 107 (149)
...+.+.+.+.+++.|+.
T Consensus 139 ~~~~~R~~Gf~~al~~~g~~ 158 (294)
T 3qk7_A 139 SYVDQRLQGYVQTMSEAGLM 158 (294)
T ss_dssp HHHHHHHHHHHHHHHTTTCC
T ss_pred chHHHHHHHHHHHHHHCCCC
Confidence 345666676666555543
No 60
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=94.36 E-value=0.48 Score=33.23 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=60.7
Q ss_pred HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
.+...++.+||-.........+..+ .. ++|+|..+....... .-.+...+..-+...++.+...|-++++++...
T Consensus 61 ~l~~~~vdgiIi~~~~~~~~~~~~~-~~-~iPvV~i~~~~~~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 135 (289)
T 3k9c_A 61 ALMRERCEAAILLGTRFDTDELGAL-AD-RVPALVVARASGLPG---VGAVRGDDVAGITLAVDHLTELGHRNIAHIDGA 135 (289)
T ss_dssp HHTTTTEEEEEEETCCCCHHHHHHH-HT-TSCEEEESSCCSSTT---SEEEEECHHHHHHHHHHHHHHTTCCSEEEECCT
T ss_pred HHHhCCCCEEEEECCCCCHHHHHHH-Hc-CCCEEEEcCCCCCCC---CCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 3445678887754443344455544 44 999999775332222 234666766677788888877899999999865
Q ss_pred C--cchhhHHHHHhCCCCCCce
Q psy18065 88 D--NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 88 ~--~~~~~l~~l~~~~~~~~~~ 107 (149)
. ....+.+.+.+.+++.|..
T Consensus 136 ~~~~~~~R~~Gf~~al~~~g~~ 157 (289)
T 3k9c_A 136 DAPGGADRRAGFLAAMDRHGLS 157 (289)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCG
T ss_pred CCccHHHHHHHHHHHHHHCCCC
Confidence 2 2345666677666666654
No 61
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=94.34 E-value=0.33 Score=33.62 Aligned_cols=93 Identities=12% Similarity=-0.016 Sum_probs=53.9
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED 88 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~ 88 (149)
+...++.++|..........+ ..+...++|++..+.... . ...+...+...+...++.+...|-++++++....
T Consensus 51 l~~~~vdgiI~~~~~~~~~~~-~~~~~~~iPvV~~~~~~~-~----~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~ 124 (276)
T 2h0a_A 51 TLAYLTDGLILASYDLTERFE-EGRLPTERPVVLVDAQNP-R----YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEE 124 (276)
T ss_dssp ---CCCSEEEEESCCCC-------CCSCSSCEEEESSCCT-T----SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCS
T ss_pred HHhCCCCEEEEecCCCCHHHH-HHHhhcCCCEEEEeccCC-C----CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 345667777653332222233 334567899998764332 1 3456666666777888888777999999997643
Q ss_pred -------cch-hhHHHHHhCCCCCCce
Q psy18065 89 -------NGL-FKLQELVKTPPTLKTE 107 (149)
Q Consensus 89 -------~~~-~~l~~l~~~~~~~~~~ 107 (149)
... .+.+.+.+.+++.|+.
T Consensus 125 ~~~~~~~~~~~~R~~gf~~~l~~~g~~ 151 (276)
T 2h0a_A 125 PDRAFRRTVFAERMAGFQEALKEAGRP 151 (276)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHTTCC
T ss_pred ccccccchhHHHHHHHHHHHHHHcCCC
Confidence 234 5666666665555543
No 62
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=94.33 E-value=0.42 Score=33.31 Aligned_cols=96 Identities=5% Similarity=-0.071 Sum_probs=61.0
Q ss_pred HHhhCCcEEEE-cCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh--cCCcEEEEE
Q psy18065 8 RQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF--LNWTKVAIV 84 (149)
Q Consensus 8 ~~~~~~v~aii-Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~--~~W~~v~vi 84 (149)
.+...++.+|| .|..+.........+...++|+|..+.... . ..-.+.......+...++.+.. -|-++++++
T Consensus 56 ~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~-~---~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i 131 (291)
T 3l49_A 56 TLIAQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATP-H---AINNTTSNNYSIGAELALQMVADLGGKGNVLVF 131 (291)
T ss_dssp HHHHHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCT-T---CSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCC-C---cCceEecChHHHHHHHHHHHHHHcCCCceEEEE
Confidence 34456777777 444433444445556677999999875332 1 1235667777778888887766 799999999
Q ss_pred eec-Cc--chhhHHHHHhCCCCC-Cce
Q psy18065 85 YEE-DN--GLFKLQELVKTPPTL-KTE 107 (149)
Q Consensus 85 ~~~-~~--~~~~l~~l~~~~~~~-~~~ 107 (149)
... +. ...+.+.+.+.+++. |+.
T Consensus 132 ~~~~~~~~~~~R~~gf~~~l~~~~~~~ 158 (291)
T 3l49_A 132 NGFYSVPVCKIRYDQMKYVLEAFPDVK 158 (291)
T ss_dssp CSCTTSHHHHHHHHHHHHHHHTCTTEE
T ss_pred eCCCCCchHHHHHHHHHHHHHHCCCCE
Confidence 754 22 345666677666555 454
No 63
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=94.29 E-value=0.66 Score=32.32 Aligned_cols=96 Identities=8% Similarity=0.028 Sum_probs=58.8
Q ss_pred HhhCCcEEEEcCCC-CC---cHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEE
Q psy18065 9 QLQNGVQALFGPSD-AL---LGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIV 84 (149)
Q Consensus 9 ~~~~~v~aiiGp~~-s~---~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi 84 (149)
+...++.++|-... +. ........+...++|+|..+........ -.+......-+...++.+...|-++++++
T Consensus 67 l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~---~~V~~d~~~~~~~a~~~L~~~G~~~i~~i 143 (298)
T 3tb6_A 67 LLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYAELAA---PSFTLDDVKGGMMAAEHLLSLGHTHMMGI 143 (298)
T ss_dssp HHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTTCSS---CEEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcCCCCC---CEEEeCcHHHHHHHHHHHHHCCCCcEEEE
Confidence 34567777664333 21 2333344456679999998754322222 23556666778888888877899999999
Q ss_pred eecCc--chhhHHHHHhCCCCCCce
Q psy18065 85 YEEDN--GLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 85 ~~~~~--~~~~l~~l~~~~~~~~~~ 107 (149)
...+. ...+.+.+.+.+++.|+.
T Consensus 144 ~~~~~~~~~~R~~gf~~~l~~~g~~ 168 (298)
T 3tb6_A 144 FKADDTQGVKRMNGFIQAHRERELF 168 (298)
T ss_dssp EESSSHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCccHHHHHHHHHHHHHHcCCC
Confidence 86532 345566666655555543
No 64
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=94.28 E-value=0.66 Score=32.49 Aligned_cols=96 Identities=14% Similarity=0.013 Sum_probs=58.7
Q ss_pred HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
.+.+.++.+||-.........+..+ ...++|+|..+....... ...+.+.+...+...++.+...|.++++++...
T Consensus 67 ~l~~~~vdgiIi~~~~~~~~~~~~l-~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 142 (289)
T 2fep_A 67 TMLGKQVDGIVFMGGNITDEHVAEF-KRSPVPIVLAASVEEQEE---TPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGP 142 (289)
T ss_dssp HHHHTTCSEEEECCSCCCHHHHHHH-HHSSSCEEEESCCCTTCC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEEESC
T ss_pred HHHhCCCCEEEEecCCCCHHHHHHH-HhcCCCEEEEccccCCCC---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 3445678877754433333444443 467899999865332112 234566776777788888777799999999864
Q ss_pred C-c---chhhHHHHHhCCCCCCce
Q psy18065 88 D-N---GLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 88 ~-~---~~~~l~~l~~~~~~~~~~ 107 (149)
. . ...+.+.+.+.+++.|+.
T Consensus 143 ~~~~~~~~~R~~Gf~~al~~~g~~ 166 (289)
T 2fep_A 143 MAEPINRSKKLQGYKRALEEANLP 166 (289)
T ss_dssp TTSHHHHTTHHHHHHHHHHHTTCC
T ss_pred ccccccHHHHHHHHHHHHHHcCCC
Confidence 3 2 345566666555444543
No 65
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=94.24 E-value=0.66 Score=33.22 Aligned_cols=95 Identities=9% Similarity=-0.077 Sum_probs=58.3
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED 88 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~ 88 (149)
+...++.++|..........+..+ ...++|++..+....... ...+.+.+..-+...++.+...|-++++++....
T Consensus 115 l~~~~vdgiI~~~~~~~~~~~~~l-~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 190 (332)
T 2o20_A 115 FLSKQVDGIVYMGSSLDEKIRTSL-KNSRTPVVLVGTIDGDKE---IPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSL 190 (332)
T ss_dssp HHHTTCSEEEECSSCCCHHHHHHH-HHHCCCEEEESCCCTTSC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCT
T ss_pred HHhCCCCEEEEeCCCCCHHHHHHH-HhCCCCEEEEccccCCCC---CCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 445678887764433333344443 467899998764322112 2245666666677778877777999999998652
Q ss_pred ---cchhhHHHHHhCCCCCCce
Q psy18065 89 ---NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 89 ---~~~~~l~~l~~~~~~~~~~ 107 (149)
....+.+.+.+.+++.|+.
T Consensus 191 ~~~~~~~R~~Gf~~al~~~g~~ 212 (332)
T 2o20_A 191 KDVENTERMVGYQEALLEANIE 212 (332)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccHHHHHHHHHHHHHHcCCC
Confidence 2345666666655555543
No 66
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=94.10 E-value=0.17 Score=35.18 Aligned_cols=93 Identities=11% Similarity=0.037 Sum_probs=56.1
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC-CCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~-~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
+...++.+|| -........+.. .++|+|..+... .....+ .+.+.....+...++.+...|-++++++...
T Consensus 56 l~~~~vdgiI-~~~~~~~~~~~~----~~iPvV~~~~~~~~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~ 127 (280)
T 3gyb_A 56 ALSMRPDGII-IAQDIPDFTVPD----SLPPFVIAGTRITQASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVG 127 (280)
T ss_dssp HHTTCCSEEE-EESCC------------CCCEEEESCCCSSSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred HHhCCCCEEE-ecCCCChhhHhh----cCCCEEEECCCCCCCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 4456788888 322222233322 899999987543 222223 3556666778888888877899999999875
Q ss_pred C-cchhhHHHHHhCCCCCCceEE
Q psy18065 88 D-NGLFKLQELVKTPPTLKTEMY 109 (149)
Q Consensus 88 ~-~~~~~l~~l~~~~~~~~~~v~ 109 (149)
. ....+.+.+.+.+++.|..+.
T Consensus 128 ~~~~~~R~~gf~~~l~~~~~~~~ 150 (280)
T 3gyb_A 128 SGAGLRRFESFEATMRAHGLEPL 150 (280)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCCE
T ss_pred CchHHHHHHHHHHHHHHcCcCCC
Confidence 3 245566667766666665543
No 67
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=94.00 E-value=1.1 Score=31.92 Aligned_cols=102 Identities=7% Similarity=-0.086 Sum_probs=63.6
Q ss_pred HHhhCC--cEEEEcCCCCCcH-HHHHHhhcccCCCceeeccCCCC----CCc-ccEEEecCChhHHHHHHHHHHHh--cC
Q psy18065 8 RQLQNG--VQALFGPSDALLG-PHVQSICEALDVPHMESRLDLEL----NSK-EFSVNLYPSQKLLNAAFKDVIRF--LN 77 (149)
Q Consensus 8 ~~~~~~--v~aiiGp~~s~~~-~~v~~~~~~~~iP~is~~~~~~~----~~~-~~~~~~~p~~~~~~~ai~~ll~~--~~ 77 (149)
.+.+.+ +.+||........ ......+...++|+|........ +.. +....+.+.+...+...++.+.. -|
T Consensus 56 ~l~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G 135 (332)
T 2rjo_A 56 ALLQKTGGNLVLNVDPNDSADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGG 135 (332)
T ss_dssp HHHHHTTTCEEEEECCSSHHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHCCCCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCC
Confidence 344567 8888764433222 12333455678999987643221 011 23456777877778888887755 69
Q ss_pred CcEEEEEeec-C--cchhhHHHHHhCCCCC-CceEE
Q psy18065 78 WTKVAIVYEE-D--NGLFKLQELVKTPPTL-KTEMY 109 (149)
Q Consensus 78 W~~v~vi~~~-~--~~~~~l~~l~~~~~~~-~~~v~ 109 (149)
-++++++... + ....+.+.+.+.+++. |+.+.
T Consensus 136 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~ 171 (332)
T 2rjo_A 136 KGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLL 171 (332)
T ss_dssp CEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 9999999864 3 2456677777766666 76553
No 68
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=93.94 E-value=1.1 Score=31.35 Aligned_cols=95 Identities=6% Similarity=0.028 Sum_probs=58.8
Q ss_pred HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
.+...++.++|..........+.. +...++|+|..+....... ...+.+.+...+...++.+...|-++++++...
T Consensus 62 ~l~~~~vdgiIi~~~~~~~~~~~~-l~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 137 (290)
T 2rgy_A 62 FLIGRDCDGVVVISHDLHDEDLDE-LHRMHPKMVFLNRAFDALP---DASFCPDHRRGGELAAATLIEHGHRKLAVISGP 137 (290)
T ss_dssp HHHHTTCSEEEECCSSSCHHHHHH-HHHHCSSEEEESSCCTTSG---GGEECCCHHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred HHHhcCccEEEEecCCCCHHHHHH-HhhcCCCEEEEccccCCCC---CCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCC
Confidence 344567888776443333334443 4457999999765332111 224566766677778887776799999999865
Q ss_pred -C--cchhhHHHHHhCCCCCCc
Q psy18065 88 -D--NGLFKLQELVKTPPTLKT 106 (149)
Q Consensus 88 -~--~~~~~l~~l~~~~~~~~~ 106 (149)
+ ....+.+.+.+.+++.|+
T Consensus 138 ~~~~~~~~R~~Gf~~al~~~g~ 159 (290)
T 2rgy_A 138 FTASDNVERLDGFFDELARHGI 159 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCccHHHHHHHHHHHHHHcCC
Confidence 2 234566666666555554
No 69
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=93.88 E-value=1.1 Score=31.31 Aligned_cols=135 Identities=13% Similarity=0.033 Sum_probs=77.1
Q ss_pred HHhhCCcEEEE-cCCCCCc-HHHHHHhhcccCCCceeeccCCC---CCCcccEEEecCChhHHHHHHHHHHHhcC-----
Q psy18065 8 RQLQNGVQALF-GPSDALL-GPHVQSICEALDVPHMESRLDLE---LNSKEFSVNLYPSQKLLNAAFKDVIRFLN----- 77 (149)
Q Consensus 8 ~~~~~~v~aii-Gp~~s~~-~~~v~~~~~~~~iP~is~~~~~~---~~~~~~~~~~~p~~~~~~~ai~~ll~~~~----- 77 (149)
.++..++.+|| .|..... ...+.. +. .++|+|....... .+.......+.+.....+...++.+...+
T Consensus 58 ~~~~~~vdgiii~~~~~~~~~~~~~~-~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~ 135 (304)
T 3o1i_D 58 LCTQWGANAIILGTVDPHAYEHNLKS-WV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSG 135 (304)
T ss_dssp HHHHHTCSEEEECCSSTTSSTTTHHH-HT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTC
T ss_pred HHHHcCCCEEEEeCCChhHHHHHHHH-Hc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCC
Confidence 34455676666 4444331 233444 44 8999999753221 11223456777887778888888887777
Q ss_pred CcEEEEEeec-C--cchhhHHHHHhCCCCCCceEEEEecCC---CchHHHHHHH-HhCCCceEEEecCchhHHHHH
Q psy18065 78 WTKVAIVYEE-D--NGLFKLQELVKTPPTLKTEMYIRHANP---STYRNVLREI-RQKEIFNLIIDTSTTHISQFF 146 (149)
Q Consensus 78 W~~v~vi~~~-~--~~~~~l~~l~~~~~~~~~~v~~~~~~~---~d~~~~l~~i-~~~~~~~iil~~~~~~~~~il 146 (149)
-++++++... + ....+.+.+.+.+++.|+.+....... ++..+.+.++ +....+. + .++...+..++
T Consensus 136 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~ 209 (304)
T 3o1i_D 136 KTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIHIVDSFWADNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAI 209 (304)
T ss_dssp CEEEEEECCCC-----CHHHHHHHHTTTTBTEEEEECCCCCSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHH
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHhcCCCEEEEeecCCCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHH
Confidence 8899999754 2 345778889988888887654322222 1223333333 3344556 3 34544444443
No 70
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=93.85 E-value=0.64 Score=32.47 Aligned_cols=95 Identities=6% Similarity=-0.031 Sum_probs=59.7
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED 88 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~ 88 (149)
+...++.+||-........ ....+...++|+|..+....... ...+.......+...++.+...|-++++++....
T Consensus 60 l~~~~vdgiIi~~~~~~~~-~~~~~~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~ 135 (291)
T 3egc_A 60 FFERRVDGLILAPSEGEHD-YLRTELPKTFPIVAVNRELRIPG---CGAVLSENVRGARTAVEYLIARGHTRIGAIVGSA 135 (291)
T ss_dssp HHHTTCSEEEECCCSSCCH-HHHHSSCTTSCEEEESSCCCCTT---CEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCT
T ss_pred HHHCCCCEEEEeCCCCChH-HHHHhhccCCCEEEEecccCCCC---CCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 3456777777544433333 33446677999999775432222 2456667777788888888778999999997653
Q ss_pred ---cchhhHHHHHhCCCCCCce
Q psy18065 89 ---NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 89 ---~~~~~l~~l~~~~~~~~~~ 107 (149)
....+.+.+.+.+++.|+.
T Consensus 136 ~~~~~~~R~~gf~~~l~~~g~~ 157 (291)
T 3egc_A 136 GLMTSRERLKGFRAAMSAAGLP 157 (291)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCC
T ss_pred CCcCHHHHHHHHHHHHHHcCCC
Confidence 2345566666655544543
No 71
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=93.80 E-value=0.77 Score=31.66 Aligned_cols=95 Identities=11% Similarity=-0.068 Sum_probs=57.3
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE- 87 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~- 87 (149)
+...++.++|-.........+.. +...++|++..+...... . ...+...+...+...++.+...|.++++++...
T Consensus 55 l~~~~vdgii~~~~~~~~~~~~~-l~~~~iPvV~~~~~~~~~--~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~ 130 (275)
T 3d8u_A 55 FLESRPAGVVLFGSEHSQRTHQL-LEASNTPVLEIAELSSKA--S-YLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARG 130 (275)
T ss_dssp HHTSCCCCEEEESSCCCHHHHHH-HHHHTCCEEEESSSCSSS--S-SEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSC
T ss_pred HHhcCCCEEEEeCCCCCHHHHHH-HHhCCCCEEEEeeccCCC--C-CCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence 44566766554222222333433 455799999876432211 2 245677777777888887776799999999865
Q ss_pred C--cchhhHHHHHhCCCCCCce
Q psy18065 88 D--NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 88 ~--~~~~~l~~l~~~~~~~~~~ 107 (149)
+ ....+.+.+.+.+++.|+.
T Consensus 131 ~~~~~~~R~~gf~~~l~~~g~~ 152 (275)
T 3d8u_A 131 NHSTLQRQLHGWQSAMIENYLT 152 (275)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCC
T ss_pred CCchHHHHHHHHHHHHHHcCCC
Confidence 2 2345666666655555543
No 72
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=93.77 E-value=1.2 Score=31.14 Aligned_cols=96 Identities=14% Similarity=-0.051 Sum_probs=57.5
Q ss_pred HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
.+.+.++.++|..........+.. +...++|+|..+....... ...+.+.+...+...++.+...|-++++++...
T Consensus 59 ~l~~~~vdgiIi~~~~~~~~~~~~-l~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 134 (287)
T 3bbl_A 59 LIRSGNVDGFVLSSINYNDPRVQF-LLKQKFPFVAFGRSNPDWD---FAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWP 134 (287)
T ss_dssp HHHTTCCSEEEECSCCTTCHHHHH-HHHTTCCEEEESCCSTTCC---CCEEEECHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred HHHcCCCCEEEEeecCCCcHHHHH-HHhcCCCEEEECCcCCCCC---CCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 344567887775433222233443 4457999999765332112 224556666677777787766799999999865
Q ss_pred -C--cchhhHHHHHhCCCCCCce
Q psy18065 88 -D--NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 88 -~--~~~~~l~~l~~~~~~~~~~ 107 (149)
+ ....+.+.+.+.+++.|+.
T Consensus 135 ~~~~~~~~R~~Gf~~~l~~~g~~ 157 (287)
T 3bbl_A 135 EDSRVGNDRLQGYLEAMQTAQLP 157 (287)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred cccccHHHHHHHHHHHHHHcCCC
Confidence 2 2345666666655555543
No 73
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=93.65 E-value=0.83 Score=32.21 Aligned_cols=93 Identities=8% Similarity=0.030 Sum_probs=58.6
Q ss_pred HhhCCcEEEEcCCCCCcHH-HHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 9 QLQNGVQALFGPSDALLGP-HVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~-~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
+...++.++|-........ .+..+.. ++|+|..+..... .. -.+......-+...++.+...|-++++++...
T Consensus 67 l~~~~vdgiI~~~~~~~~~~~~~~l~~--~iPvV~i~~~~~~-~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 140 (303)
T 3kke_A 67 VSEGRVDGVLLQRREDFDDDMLAAVLE--GVPAVTINSRVPG-RV---GSVILDDQKGGGIATEHLITLGHSRIAFISGT 140 (303)
T ss_dssp HHSCSSSEEEECCCTTCCHHHHHHHHT--TSCEEEESCCCTT-CC---CEEEECHHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred HHhCCCcEEEEecCCCCcHHHHHHHhC--CCCEEEECCcCCC-CC---CEEEECcHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 3356777776544333333 5555555 9999998754322 22 24556666677777887777899999999764
Q ss_pred -C--cchhhHHHHHhCCCCCCce
Q psy18065 88 -D--NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 88 -~--~~~~~l~~l~~~~~~~~~~ 107 (149)
+ ....+.+.+.+.+++.|+.
T Consensus 141 ~~~~~~~~R~~Gf~~al~~~g~~ 163 (303)
T 3kke_A 141 AIHDTAQRRKEGYLETLASAGLR 163 (303)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CcCccHHHHHHHHHHHHHHcCCC
Confidence 2 2345666666665555544
No 74
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=93.60 E-value=0.88 Score=32.69 Aligned_cols=97 Identities=10% Similarity=0.047 Sum_probs=57.2
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE- 87 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~- 87 (149)
+...++.++|-.........+..+....++|++..+...... ++...+...+..-+...++.+...|.++++++...
T Consensus 110 l~~~~vdgiI~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~ 187 (340)
T 1qpz_A 110 MAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKA--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPL 187 (340)
T ss_dssp HHHTTCSEEEECCSCCCHHHHHHHHTTTTSCEEEEEESSCCC--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCT
T ss_pred HHcCCCCEEEEeCCCCChHHHHHHHhhCCCCEEEEecccCCC--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 445678887753332222223333333689999876432211 22235666766667777787766799999999764
Q ss_pred C--cchhhHHHHHhCCCCCCce
Q psy18065 88 D--NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 88 ~--~~~~~l~~l~~~~~~~~~~ 107 (149)
+ ....+.+.+.+.+++.|+.
T Consensus 188 ~~~~~~~R~~Gf~~al~~~g~~ 209 (340)
T 1qpz_A 188 ERNTGAGRLAGFMKAMEEAMIK 209 (340)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccHHHHHHHHHHHHHHCCCC
Confidence 2 2345666666665555543
No 75
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=93.52 E-value=1.4 Score=31.51 Aligned_cols=95 Identities=12% Similarity=-0.027 Sum_probs=57.8
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED 88 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~ 88 (149)
+...++.++|..........+.. +...++|++..+....... ...+...+...+...++.+...|.++++++....
T Consensus 112 l~~~~vdgiI~~~~~~~~~~~~~-l~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 187 (332)
T 2hsg_A 112 MLGKQVDGIIFMSGNVTEEHVEE-LKKSPVPVVLAASIESTNQ---IPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTL 187 (332)
T ss_dssp TSCCSSCCEEECCSSCCHHHHHH-HTTSSSCEEEESCCCSCTT---SCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCT
T ss_pred HHhCCCcEEEEecCCCCHHHHHH-HHhCCCCEEEEccccCCCC---CCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 33467877775443333334443 4567899998764322112 2245566666677777877777999999997653
Q ss_pred -c---chhhHHHHHhCCCCCCce
Q psy18065 89 -N---GLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 89 -~---~~~~l~~l~~~~~~~~~~ 107 (149)
. ...+.+.+.+.+++.|+.
T Consensus 188 ~~~~~~~~R~~Gf~~al~~~g~~ 210 (332)
T 2hsg_A 188 EEPINHAKKVKGYKRALTESGLP 210 (332)
T ss_dssp TSHHHHTTHHHHHHHHHHTTTCC
T ss_pred ccCccHHHHHHHHHHHHHHcCCC
Confidence 2 345666666665555653
No 76
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=93.49 E-value=0.76 Score=32.36 Aligned_cols=123 Identities=10% Similarity=0.109 Sum_probs=68.3
Q ss_pred HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeecc-CCCC-------C-CcccEEEecCChhHHHHHHHHHHHhc--
Q psy18065 8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRL-DLEL-------N-SKEFSVNLYPSQKLLNAAFKDVIRFL-- 76 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~-~~~~-------~-~~~~~~~~~p~~~~~~~ai~~ll~~~-- 76 (149)
.+.++++.+||...+. ....+.. ...++|+|..+. ++.. . .......+.- ..-....++++...
T Consensus 57 ~l~~~~vDgII~~~~~-~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~--~~~~~~~~~~l~~~~p 131 (295)
T 3lft_A 57 QLVANGNDLVVGIATP-AAQGLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVSD--HNPAQQQVELIKALTP 131 (295)
T ss_dssp HHTTSSCSEEEEESHH-HHHHHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEEE--CCCHHHHHHHHHHHCT
T ss_pred HHHhcCCCEEEECCcH-HHHHHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEEC--CccHHHHHHHHHHhCC
Confidence 3445678888864321 1222222 246899988753 2210 0 0112222221 11234555666555
Q ss_pred CCcEEEEEeecCc--chhhHHHHHhCCCCCCceEEEEecC-CCchHHHHHHHHhCCCceEEEe
Q psy18065 77 NWTKVAIVYEEDN--GLFKLQELVKTPPTLKTEMYIRHAN-PSTYRNVLREIRQKEIFNLIID 136 (149)
Q Consensus 77 ~W~~v~vi~~~~~--~~~~l~~l~~~~~~~~~~v~~~~~~-~~d~~~~l~~i~~~~~~~iil~ 136 (149)
|-+++++++.... +..+++.+.+.+++.|+.+...... .++..+.++++.. ..+.|++.
T Consensus 132 g~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~-~~dai~~~ 193 (295)
T 3lft_A 132 NVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPSTNEIASTVTVMTS-KVDAIWVP 193 (295)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHTT-TCSEEEEC
T ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHHHh-cCCEEEEC
Confidence 8999999998743 4556777777766678776543332 3567777777764 45555553
No 77
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=93.38 E-value=0.59 Score=32.68 Aligned_cols=131 Identities=6% Similarity=-0.028 Sum_probs=72.9
Q ss_pred hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-Cc
Q psy18065 11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-DN 89 (149)
Q Consensus 11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-~~ 89 (149)
+.++.++|--........+ ..+...++|+|..+....... .-.+.......+...++.+...|-++++++... +.
T Consensus 64 ~~~vdgiIi~~~~~~~~~~-~~l~~~~iPvV~i~~~~~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~ 139 (288)
T 3gv0_A 64 TGSADGVIISKIEPNDPRV-RFMTERNMPFVTHGRSDMGIE---HAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRF 139 (288)
T ss_dssp HTCCSEEEEESCCTTCHHH-HHHHHTTCCEEEESCCCSSCC---CEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTS
T ss_pred cCCccEEEEecCCCCcHHH-HHHhhCCCCEEEECCcCCCCC---CcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCccc
Confidence 4566665532222222333 345567999998775332222 234566776778888888877799999999765 32
Q ss_pred --chhhHHHHHhCCCCCCceEEEEec-C-C---CchHHHHHHHHhCC--CceEEEecCchhHHHHH
Q psy18065 90 --GLFKLQELVKTPPTLKTEMYIRHA-N-P---STYRNVLREIRQKE--IFNLIIDTSTTHISQFF 146 (149)
Q Consensus 90 --~~~~l~~l~~~~~~~~~~v~~~~~-~-~---~d~~~~l~~i~~~~--~~~iil~~~~~~~~~il 146 (149)
...+.+.+.+.+++.|+.+....+ . . ++..+.+.++.+.. .+.|+ .++...+..++
T Consensus 140 ~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~ 204 (288)
T 3gv0_A 140 SFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALV 204 (288)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHH
Confidence 346677777766666665433211 1 1 22345566665543 33333 33444444333
No 78
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=93.16 E-value=0.27 Score=34.45 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=54.7
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE- 87 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~- 87 (149)
+...++.++|..........+. .+...++|++..+...... ...+.+.+...+...++.+...|-++++++...
T Consensus 61 l~~~~vdgiI~~~~~~~~~~~~-~l~~~~iPvV~~~~~~~~~----~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~ 135 (290)
T 3clk_A 61 AIERPVMGILLLSIALTDDNLQ-LLQSSDVPYCFLSMGFDDD----RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQ 135 (290)
T ss_dssp HHSSCCSEEEEESCC----CHH-HHHCC--CEEEESCC--CC----SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCC
T ss_pred HHhcCCCEEEEecccCCHHHHH-HHHhCCCCEEEEcCCCCCC----CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 4456777776533322222333 3456799999876433211 235667777777888888777799999999864
Q ss_pred C--cchhhHHHHHhCCCCCCce
Q psy18065 88 D--NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 88 ~--~~~~~l~~l~~~~~~~~~~ 107 (149)
+ ....+.+.+.+.+++.|+.
T Consensus 136 ~~~~~~~R~~gf~~~l~~~g~~ 157 (290)
T 3clk_A 136 YPYTGRKRLAGYKKALKEANIA 157 (290)
T ss_dssp CTTTHHHHHHHHHHHHHHTTCC
T ss_pred CCcchHHHHHHHHHHHHHcCCC
Confidence 2 2456666666665555543
No 79
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=93.15 E-value=1.9 Score=31.91 Aligned_cols=97 Identities=8% Similarity=-0.107 Sum_probs=61.3
Q ss_pred hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCC-CCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065 10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE- 87 (149)
Q Consensus 10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~- 87 (149)
...++.+||-.. . ...+...+...++|+|..+..... ...+..-.+...+..-+...++.+...|-++++++...
T Consensus 73 ~~~~vDGiIi~~--~-~~~~~~~l~~~~iPvV~i~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~ 149 (412)
T 4fe7_A 73 KDWLGDGVIADF--D-DKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPE 149 (412)
T ss_dssp --CCCSEEEEET--T-CHHHHHHHTTCCSCEEEEEECCSSGGGSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred hcCCCCEEEEec--C-ChHHHHHHhhCCCCEEEecCCccccccCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccc
Confidence 345677777522 2 233444566789999998743221 11122345667777778888888877899999999765
Q ss_pred Cc----chhhHHHHHhCCCCCCceEE
Q psy18065 88 DN----GLFKLQELVKTPPTLKTEMY 109 (149)
Q Consensus 88 ~~----~~~~l~~l~~~~~~~~~~v~ 109 (149)
+. ...+.+.+.+.+.+.|+...
T Consensus 150 ~~~~~~~~~R~~Gf~~al~~~g~~~~ 175 (412)
T 4fe7_A 150 SSGKRWATEREYAFRQLVAEEKYRGV 175 (412)
T ss_dssp TSCCHHHHHHHHHHHHHHTTSSSCCE
T ss_pred cccccHHHHHHHHHHHHHHHcCCCcc
Confidence 22 45677778877777776543
No 80
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=93.03 E-value=1 Score=31.54 Aligned_cols=93 Identities=13% Similarity=-0.018 Sum_probs=54.8
Q ss_pred HHhhCCcEEEE-cCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh-cCCc-EEEEE
Q psy18065 8 RQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF-LNWT-KVAIV 84 (149)
Q Consensus 8 ~~~~~~v~aii-Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~-~~W~-~v~vi 84 (149)
.++..++.+|| .|..+.........+...++|++....... .. +....+.+.+...+...++.+.. .|-+ +++++
T Consensus 56 ~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~-~~-~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i 133 (303)
T 3d02_A 56 DLIARKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESPGQ-PS-ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIY 133 (303)
T ss_dssp HHHHTTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEESCTTC-TT-CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCCC-CC-CceEEEecCHHHHHHHHHHHHHHHhCcCceEEEE
Confidence 34567788866 444322222233445567999999765311 11 22345667777777778887755 8887 89988
Q ss_pred eec-Cc--chhhHHHHHhCCC
Q psy18065 85 YEE-DN--GLFKLQELVKTPP 102 (149)
Q Consensus 85 ~~~-~~--~~~~l~~l~~~~~ 102 (149)
... +. ...+.+.+.+.++
T Consensus 134 ~g~~~~~~~~~R~~gf~~~l~ 154 (303)
T 3d02_A 134 VGSLTVPQHNLWADLLVKYQK 154 (303)
T ss_dssp CSCSSCHHHHHHHHHHHHHHH
T ss_pred ecCCCCccHHHHHHHHHHHHH
Confidence 754 22 3455565655544
No 81
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=92.89 E-value=1.7 Score=30.44 Aligned_cols=101 Identities=14% Similarity=-0.002 Sum_probs=61.3
Q ss_pred HHhhCCcEEEEcCCCCC-cHHHHHHhhcccCCCceeeccCCCCC---CcccEEEecCChhHHHHHHHHHHHh--------
Q psy18065 8 RQLQNGVQALFGPSDAL-LGPHVQSICEALDVPHMESRLDLELN---SKEFSVNLYPSQKLLNAAFKDVIRF-------- 75 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~-~~~~v~~~~~~~~iP~is~~~~~~~~---~~~~~~~~~p~~~~~~~ai~~ll~~-------- 75 (149)
.+...++.+||...... ........+...++|+|......... .++....+...+...+...++.+..
T Consensus 54 ~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~ 133 (309)
T 2fvy_A 54 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW 133 (309)
T ss_dssp HHHHTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHcCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccc
Confidence 34456788777644332 22333344556899999976532211 1123456777777777777776654
Q ss_pred ----cCCcEEEEEeec-C--cchhhHHHHHhCCCCCCceE
Q psy18065 76 ----LNWTKVAIVYEE-D--NGLFKLQELVKTPPTLKTEM 108 (149)
Q Consensus 76 ----~~W~~v~vi~~~-~--~~~~~l~~l~~~~~~~~~~v 108 (149)
.|-++++++... + ....+.+.+.+.+++.|..+
T Consensus 134 ~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 173 (309)
T 2fvy_A 134 DLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 173 (309)
T ss_dssp CTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCE
T ss_pred cccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCce
Confidence 678899998764 2 23566666776665566544
No 82
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=92.54 E-value=1.7 Score=30.10 Aligned_cols=94 Identities=5% Similarity=-0.048 Sum_probs=58.0
Q ss_pred hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-Cc
Q psy18065 11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-DN 89 (149)
Q Consensus 11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-~~ 89 (149)
..++.+||-....... .....+...++|+|..+...... +....+.......+...++.+...|-++++++... +.
T Consensus 67 ~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~ 143 (292)
T 3k4h_A 67 GRQIGGIILLYSREND-RIIQYLHEQNFPFVLIGKPYDRK--DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDL 143 (292)
T ss_dssp TTCCCEEEESCCBTTC-HHHHHHHHTTCCEEEESCCSSCT--TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTB
T ss_pred cCCCCEEEEeCCCCCh-HHHHHHHHCCCCEEEECCCCCCC--CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccc
Confidence 4677776643332222 23344566799999987543211 11234667777778888888877899999999865 32
Q ss_pred --chhhHHHHHhCCCCCCce
Q psy18065 90 --GLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 90 --~~~~l~~l~~~~~~~~~~ 107 (149)
...+.+.+.+.+++.|..
T Consensus 144 ~~~~~R~~gf~~~l~~~g~~ 163 (292)
T 3k4h_A 144 LVTRDRLAGMSDALKLADIV 163 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHcCCC
Confidence 345666666655555543
No 83
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=92.53 E-value=1.8 Score=30.01 Aligned_cols=98 Identities=8% Similarity=0.015 Sum_probs=57.7
Q ss_pred HHhhCCcEEEEc-CCCCCcH-HHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc-C-CcEEEE
Q psy18065 8 RQLQNGVQALFG-PSDALLG-PHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL-N-WTKVAI 83 (149)
Q Consensus 8 ~~~~~~v~aiiG-p~~s~~~-~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~-~-W~~v~v 83 (149)
.+++.++.+||- |...... ..+. .+...++|+|......... +....+.+.+...+...++.+... | -+++++
T Consensus 52 ~l~~~~vdgiIi~~~~~~~~~~~~~-~~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~ 128 (283)
T 2ioy_A 52 DLIQQKVDVLLINPVDSDAVVTAIK-EANSKNIPVITIDRSANGG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVE 128 (283)
T ss_dssp HHHHTTCSEEEECCSSTTTTHHHHH-HHHHTTCCEEEESSCCSSS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHcCCCEEEEeCCchhhhHHHHH-HHHHCCCeEEEecCCCCCc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEE
Confidence 344567877654 4433322 3333 3556799999876432211 112345566666677777766444 5 899999
Q ss_pred Eeec-Cc--chhhHHHHHhCCCCC-CceE
Q psy18065 84 VYEE-DN--GLFKLQELVKTPPTL-KTEM 108 (149)
Q Consensus 84 i~~~-~~--~~~~l~~l~~~~~~~-~~~v 108 (149)
+... +. ...+.+.+.+.+++. |+.+
T Consensus 129 i~g~~~~~~~~~R~~Gf~~al~~~~~~~~ 157 (283)
T 2ioy_A 129 LEGIPGASAARDRGKGFDEAIAKYPDIKI 157 (283)
T ss_dssp EECCTTCHHHHHHHHHHHHHHTTCTTEEE
T ss_pred EECCCCCccHHHHHHHHHHHHHhCCCCEE
Confidence 9864 22 346677777776666 7654
No 84
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=92.48 E-value=1.8 Score=29.87 Aligned_cols=112 Identities=6% Similarity=-0.068 Sum_probs=63.4
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC---c
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED---N 89 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~---~ 89 (149)
++.++|-.........+.. +...++|+|..+...... ....+...+...+...++.+...|-++++++.... .
T Consensus 57 ~vdgiI~~~~~~~~~~~~~-l~~~~iPvV~~~~~~~~~---~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~ 132 (277)
T 3cs3_A 57 MVDGAIILDWTFPTKEIEK-FAERGHSIVVLDRTTEHR---NIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYD 132 (277)
T ss_dssp TCSEEEEECTTSCHHHHHH-HHHTTCEEEESSSCCCST---TEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHH
T ss_pred cccEEEEecCCCCHHHHHH-HHhcCCCEEEEecCCCCC---CCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCcc
Confidence 4555553222222334443 445789999876432211 23456677766777778877767999999998652 2
Q ss_pred chhhHHHHHhCCCCCCceEEEEecC--CCchHHHHHHHHhC
Q psy18065 90 GLFKLQELVKTPPTLKTEMYIRHAN--PSTYRNVLREIRQK 128 (149)
Q Consensus 90 ~~~~l~~l~~~~~~~~~~v~~~~~~--~~d~~~~l~~i~~~ 128 (149)
...+.+.+.+.+++.|+.+.+...+ ..+-.+.+.++.+.
T Consensus 133 ~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (277)
T 3cs3_A 133 SQERLAVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQ 173 (277)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCSSHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCCeeEEeCCCChhHHHHHHHHHHhc
Confidence 3456666666655566654421111 12334555665554
No 85
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=92.11 E-value=1.6 Score=31.52 Aligned_cols=94 Identities=12% Similarity=0.078 Sum_probs=53.4
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCC-CCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
+...++.++|-.........+. .+...++|++..+..... ...+ .+...+..-+...++.+...|.++++++...
T Consensus 118 l~~~~vdgiI~~~~~~~~~~~~-~l~~~~iPvV~i~~~~~~~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 193 (348)
T 3bil_A 118 LTSHGVDGIICVPNEECANQLE-DLQKQGMPVVLVDRELPGDSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGP 193 (348)
T ss_dssp HHHTTCSCEEECCCGGGHHHHH-HHHHC-CCEEEESSCCSCC-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred HHhCCCCEEEEeCCCCChHHHH-HHHhCCCCEEEEcccCCCCCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 3456777776543332233333 344578999987643221 1222 3444554556777777766799999999765
Q ss_pred -C--cchhhHHHHHhCCCCCCc
Q psy18065 88 -D--NGLFKLQELVKTPPTLKT 106 (149)
Q Consensus 88 -~--~~~~~l~~l~~~~~~~~~ 106 (149)
+ ....+.+.+.+.+++.|+
T Consensus 194 ~~~~~~~~R~~Gf~~al~~~g~ 215 (348)
T 3bil_A 194 MDTSTGRERLEDFKAACANSKI 215 (348)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccHHHHHHHHHHHHHHcCc
Confidence 2 234566666665544454
No 86
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=92.06 E-value=2.2 Score=29.94 Aligned_cols=97 Identities=9% Similarity=0.067 Sum_probs=59.4
Q ss_pred HhhCCcEEEEcCCCC-Cc-HHHHHHhhcccCCCceeeccCCCC-CCcccEEEecCChhHHHHHHHHHHHhcC---CcEEE
Q psy18065 9 QLQNGVQALFGPSDA-LL-GPHVQSICEALDVPHMESRLDLEL-NSKEFSVNLYPSQKLLNAAFKDVIRFLN---WTKVA 82 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s-~~-~~~v~~~~~~~~iP~is~~~~~~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~---W~~v~ 82 (149)
+...++.+||..... .. ...+ ..+...++|+|........ ....+...+...+...+...++.+...| -++++
T Consensus 54 l~~~~vdgiIi~~~~~~~~~~~~-~~~~~~~iPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~ 132 (306)
T 2vk2_A 54 FVAQGVDAIFIAPVVATGWEPVL-KEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVV 132 (306)
T ss_dssp HHHHTCSEEEECCSSSSSCHHHH-HHHHHTTCCEEEESSCCCCSCGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHcCCCEEEEeCCChhhHHHHH-HHHHHCCCCEEEecCCCCCCCccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 445678777754433 22 2333 3345678999987643221 1111234566777667777777665555 78999
Q ss_pred EEeec-C--cchhhHHHHHhCCCCCCc
Q psy18065 83 IVYEE-D--NGLFKLQELVKTPPTLKT 106 (149)
Q Consensus 83 vi~~~-~--~~~~~l~~l~~~~~~~~~ 106 (149)
++... + ....+.+.+.+.+++.|.
T Consensus 133 ~i~~~~~~~~~~~R~~Gf~~al~~~g~ 159 (306)
T 2vk2_A 133 ELQGTVGASVAIDRKKGFAEAIKNAPN 159 (306)
T ss_dssp EEECSTTCHHHHHHHHHHHHHTTTCTT
T ss_pred EEEcCCCChhHHHHHHHHHHHHhhCCC
Confidence 99764 2 245677778887777774
No 87
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=91.60 E-value=1.5 Score=26.88 Aligned_cols=76 Identities=11% Similarity=0.016 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCcEEEE-EeecCcchhhHHHHHhCCCC-CCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhH
Q psy18065 67 AAFKDVIRFLNWTKVAI-VYEEDNGLFKLQELVKTPPT-LKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHI 142 (149)
Q Consensus 67 ~ai~~ll~~~~W~~v~v-i~~~~~~~~~l~~l~~~~~~-~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~ 142 (149)
+.+..=.+.-|.+++.+ +.++-.....++...++.-. -.+-+.+.-..+++...+++++.+.+.+.++++|+.+.-
T Consensus 22 Rk~fkD~R~~GskKvviNvis~~~y~e~v~~~REAiLDNIDlG~el~~WKp~eVdkm~~k~~q~~~dGl~iYCDdeNk 99 (126)
T 2rbg_A 22 RKIFLDVRSSGSKKTTINVFTEIQYQELVTLIREALLENIDIGYELFLWKKNEVDIFLKNLEKSEVDGLLVYCDDENK 99 (126)
T ss_dssp HHHHHHHHHHTCSEEEEEEECSSCHHHHHHHTHHHHHHTTTSEEEEEEECGGGHHHHHHHHTTCCCCEEEEEECGGGH
T ss_pred HHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHHHHHhccccceEEEEeCHHHHHHHHHHHHHhCCCceEEEeCCCch
Confidence 33333446679999988 55654445555554443211 122233334457899999999999999999999998743
No 88
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=91.08 E-value=2.9 Score=29.85 Aligned_cols=92 Identities=10% Similarity=-0.085 Sum_probs=55.6
Q ss_pred HhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 9 QLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 9 ~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
+...++.++|- |..... .....+...++|++..+..... +.. .+...+..-+...++.+...|-++++++...
T Consensus 114 l~~~~vdGiIi~~~~~~~--~~~~~l~~~~iPvV~~~~~~~~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 187 (339)
T 3h5o_A 114 YLQHRPDGVLITGLSHAE--PFERILSQHALPVVYMMDLADD---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQ 187 (339)
T ss_dssp HHTTCCSEEEEECSCCCT--THHHHHHHTTCCEEEEESCCSS---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred HHcCCCCEEEEeCCCCCH--HHHHHHhcCCCCEEEEeecCCC---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 34556666543 322222 2333456679999987532211 112 5667777777888888877799999999865
Q ss_pred C--cchhhHHHHHhCCCCCCc
Q psy18065 88 D--NGLFKLQELVKTPPTLKT 106 (149)
Q Consensus 88 ~--~~~~~l~~l~~~~~~~~~ 106 (149)
. ....+.+.+.+.+++.|+
T Consensus 188 ~~~~~~~R~~Gf~~al~~~g~ 208 (339)
T 3h5o_A 188 LDERVMKRLDGYRAALDAADC 208 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHHHHHHHHCCC
Confidence 3 234556666665554554
No 89
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=90.90 E-value=3.1 Score=29.28 Aligned_cols=94 Identities=6% Similarity=-0.011 Sum_probs=56.3
Q ss_pred HHhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHH-hcCCcEEEEEe
Q psy18065 8 RQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIR-FLNWTKVAIVY 85 (149)
Q Consensus 8 ~~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~-~~~W~~v~vi~ 85 (149)
.++..++.+||- |............+...++|+|..+........ ...+...+...+...++.+. ..|-++++++.
T Consensus 53 ~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~ 130 (313)
T 3m9w_A 53 NMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMG 130 (313)
T ss_dssp HHHHTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTTSCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred HHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCCCCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 344566766664 333333233344466779999998754322221 13455666667778888776 88999999997
Q ss_pred ec-Cc--chhhHHHHHhCCCC
Q psy18065 86 EE-DN--GLFKLQELVKTPPT 103 (149)
Q Consensus 86 ~~-~~--~~~~l~~l~~~~~~ 103 (149)
.. +. ...+.+.+.+.+++
T Consensus 131 g~~~~~~~~~R~~Gf~~~l~~ 151 (313)
T 3m9w_A 131 GSPVDNNAKLFRAGQMKVLKP 151 (313)
T ss_dssp SCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHh
Confidence 54 22 34556666655444
No 90
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=90.58 E-value=1.5 Score=30.45 Aligned_cols=91 Identities=8% Similarity=-0.045 Sum_probs=57.2
Q ss_pred hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC--
Q psy18065 11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED-- 88 (149)
Q Consensus 11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~-- 88 (149)
..++.++|-.........+.. ....++|+|..+.... . .-.+...+..-+...++.+...|-++++++....
T Consensus 66 ~~~vdgiIi~~~~~~~~~~~~-~~~~~iPvV~~~~~~~--~---~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~ 139 (289)
T 3g85_A 66 ENSFDAAIIANISNYDLEYLN-KASLTLPIILFNRLSN--K---YSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLN 139 (289)
T ss_dssp TTCCSEEEESSCCHHHHHHHH-HCCCSSCEEEESCCCS--S---SEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSS
T ss_pred ccCCCEEEEecCCcccHHHHH-hccCCCCEEEECCCCC--C---CCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 456777765444333333333 2357899999775321 1 2356667777788888888778999999998653
Q ss_pred -cchhhHHHHHhCCCCCCce
Q psy18065 89 -NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 89 -~~~~~l~~l~~~~~~~~~~ 107 (149)
....+.+.+.+.+++.|+.
T Consensus 140 ~~~~~R~~gf~~~l~~~~~~ 159 (289)
T 3g85_A 140 DAMDNRNKGFIETCHKNGIK 159 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTCB
T ss_pred ccHHHHHHHHHHHHHHcCCC
Confidence 2345666666665555544
No 91
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=90.03 E-value=4 Score=29.25 Aligned_cols=99 Identities=5% Similarity=0.002 Sum_probs=61.1
Q ss_pred HHhh--CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC-CC----------CcccEEEecCChhHHHHHHHHHHH
Q psy18065 8 RQLQ--NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE-LN----------SKEFSVNLYPSQKLLNAAFKDVIR 74 (149)
Q Consensus 8 ~~~~--~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~-~~----------~~~~~~~~~p~~~~~~~ai~~ll~ 74 (149)
+++. +++.+||-.........+...+...+||+|....... .. ...+...+.+.....+...++.+.
T Consensus 55 ~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~ 134 (350)
T 3h75_A 55 ELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELL 134 (350)
T ss_dssp HHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHH
Confidence 4455 4777766543444445555567788999999874322 11 111256677887778888888775
Q ss_pred hcC------C-cEEEEEeec-C--cchhhHHHHHhCCCCCCc
Q psy18065 75 FLN------W-TKVAIVYEE-D--NGLFKLQELVKTPPTLKT 106 (149)
Q Consensus 75 ~~~------W-~~v~vi~~~-~--~~~~~l~~l~~~~~~~~~ 106 (149)
..+ - ++++++... + ....+.+.+.+.+++.+.
T Consensus 135 ~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~ 176 (350)
T 3h75_A 135 HKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ 176 (350)
T ss_dssp HHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT
T ss_pred HHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 555 3 789988754 2 234566667666655554
No 92
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=89.36 E-value=1.3 Score=30.81 Aligned_cols=108 Identities=10% Similarity=0.051 Sum_probs=64.6
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
+...++.++|-.. .. + ..+...++|++..+.. .... . . .+.+.+..-+...++.+. .|-++++++...
T Consensus 63 l~~~~vdgiIi~~-~~----~-~~~~~~~iPvV~~~~~~~~~~--~-~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~ 131 (277)
T 3hs3_A 63 FENNNVDGIITSA-FT----I-PPNFHLNTPLVMYDSANINDD--I-V-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWP 131 (277)
T ss_dssp HHHTTCSEEEEEC-CC----C-CTTCCCSSCEEEESCCCCCSS--S-E-EEEECHHHHHHHHHHTSC-TTCCEEEEEESC
T ss_pred HHhCCCCEEEEcc-hH----H-HHHHhCCCCEEEEcccccCCC--C-E-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCC
Confidence 3345666655432 11 1 1245668999987754 3221 2 3 677777777777888777 899999999765
Q ss_pred -C--cchhhHHHHHhCCCCCCceEEEEecCCCch-HHHHHHHHhC
Q psy18065 88 -D--NGLFKLQELVKTPPTLKTEMYIRHANPSTY-RNVLREIRQK 128 (149)
Q Consensus 88 -~--~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~-~~~l~~i~~~ 128 (149)
+ ....+.+.+.+.+++.|+.+... +...++ .+.+.++.++
T Consensus 132 ~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~~~~~~~~~~~~l~~ 175 (277)
T 3hs3_A 132 LSLPTIRERIEAMTAEASKLKIDYLLE-ETPENNPYISAQSALNK 175 (277)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSSCHHHHHHHHHHT
T ss_pred CcCccHHHHHHHHHHHHHHCCCCCCCC-CccCCchHHHHHHHHcC
Confidence 2 23466777777766677766543 322221 4555555443
No 93
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.52 E-value=0.25 Score=33.58 Aligned_cols=66 Identities=11% Similarity=0.184 Sum_probs=47.0
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-------------------------CC-----------CCCcccEEE
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMESRLD-------------------------LE-----------LNSKEFSVN 57 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-------------------------~~-----------~~~~~~~~~ 57 (149)
+..++||+++.=......++..+++|+|+.+-- |. .....|++-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ilD 81 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIFD 81 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceEec
Confidence 567899999888888899999999999997520 00 011235666
Q ss_pred ecCChhHHHHHHHHHHHhcCCc
Q psy18065 58 LYPSQKLLNAAFKDVIRFLNWT 79 (149)
Q Consensus 58 ~~p~~~~~~~ai~~ll~~~~W~ 79 (149)
=.|....|+.++-.++...+..
T Consensus 82 GfPRt~~Qa~~l~~~l~~~~~~ 103 (206)
T 3sr0_A 82 GFPRTVKQAEALDEMLEKKGLK 103 (206)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCC
T ss_pred CCchhHHHHHHHHhhHHHhccc
Confidence 6788777888877777665543
No 94
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=88.36 E-value=5.4 Score=28.49 Aligned_cols=124 Identities=6% Similarity=-0.052 Sum_probs=68.5
Q ss_pred hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC-
Q psy18065 10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED- 88 (149)
Q Consensus 10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~- 88 (149)
...++.++|-... ...+...++|+|..+........+ .+...+..-+...++.+...|-++++++....
T Consensus 116 ~~~~vdGiIi~~~-------~~~~~~~~iPvV~~~~~~~~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~ 185 (333)
T 3jvd_A 116 ISIQAAGIIHVPV-------VGSIAPEGIPMVQLTRGELGPGFP---RVLCDDEAGFFQLTESVLGGSGMNIAALVGEES 185 (333)
T ss_dssp HHHTCSEEEECCC-------TTCCC-CCSCEEEECC----CCSC---EEEECHHHHHHHHHHHHCCSSSCEEEEEESCTT
T ss_pred HhCCCCEEEEcch-------HHHHhhCCCCEEEECccCCCCCCC---EEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCC
Confidence 3456766665433 223456789999876533222222 35566666777778888777999999998652
Q ss_pred c--chhhHHHHHhCCCCCCceEEEEecC---CCchHHHHHHHHhCC-CceEEEecCchhHHHH
Q psy18065 89 N--GLFKLQELVKTPPTLKTEMYIRHAN---PSTYRNVLREIRQKE-IFNLIIDTSTTHISQF 145 (149)
Q Consensus 89 ~--~~~~l~~l~~~~~~~~~~v~~~~~~---~~d~~~~l~~i~~~~-~~~iil~~~~~~~~~i 145 (149)
. ...+.+.+.+.+++.|+. .+.... .++-.+.+.++.+.. .+.|+ .++...+..+
T Consensus 186 ~~~~~~R~~Gf~~al~~~g~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~ 246 (333)
T 3jvd_A 186 LSTTQERMRGISHAASIYGAE-VTFHFGHYSVESGEEMAQVVFNNGLPDALI-VASPRLMAGV 246 (333)
T ss_dssp SHHHHHHHHHHHHHHHHTTCE-EEEEECCSSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCC-EEEecCCCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHH
Confidence 2 346677777766666765 222212 123345555554443 34443 3344444333
No 95
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=87.79 E-value=3.6 Score=29.44 Aligned_cols=95 Identities=7% Similarity=-0.003 Sum_probs=57.1
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED 88 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~ 88 (149)
+...++.+||-....... .....+...++|++..+...... ....+...+..-+...++.+...|-++++++....
T Consensus 120 l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 195 (344)
T 3kjx_A 120 MLSWRPSGVIIAGLEHSE-AARAMLDAAGIPVVEIMDSDGKP---VDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKM 195 (344)
T ss_dssp HHTTCCSEEEEECSCCCH-HHHHHHHHCSSCEEEEEECSSCC---SSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESST
T ss_pred HHhCCCCEEEEECCCCCH-HHHHHHHhCCCCEEEEeCCCCCC---CCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCc
Confidence 445567666543332232 33344567799999875222111 12345667766777888877777999999997652
Q ss_pred --c--chhhHHHHHhCCCCCCce
Q psy18065 89 --N--GLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 89 --~--~~~~l~~l~~~~~~~~~~ 107 (149)
. ...+.+.+.+.+++.|+.
T Consensus 196 ~~~~~~~~R~~Gf~~al~~~g~~ 218 (344)
T 3kjx_A 196 PLDYRARKRFEGFTEVLGKNGVE 218 (344)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCccHHHHHHHHHHHHHHcCCC
Confidence 1 345666666666555554
No 96
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=87.66 E-value=3.3 Score=28.99 Aligned_cols=94 Identities=9% Similarity=0.045 Sum_probs=57.6
Q ss_pred hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-C
Q psy18065 10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-D 88 (149)
Q Consensus 10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-~ 88 (149)
...++.+||--........ ...+...++|+|..+....... .-.+......-+...++.+...|-++++++... +
T Consensus 80 ~~~~vdgiIi~~~~~~~~~-~~~l~~~~iPvV~i~~~~~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~ 155 (305)
T 3huu_A 80 QSKSVDGFILLYSLKDDPI-EHLLNEFKVPYLIVGKSLNYEN---IIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGH 155 (305)
T ss_dssp HTTCCSEEEESSCBTTCHH-HHHHHHTTCCEEEESCCCSSTT---CCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSC
T ss_pred HhCCCCEEEEeCCcCCcHH-HHHHHHcCCCEEEECCCCcccC---CcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcc
Confidence 3466777664322222223 3345567999999875432112 234566776677788888877799999999865 3
Q ss_pred c--chhhHHHHHhCCCCCCce
Q psy18065 89 N--GLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 89 ~--~~~~l~~l~~~~~~~~~~ 107 (149)
. ...+.+.+.+.+++.|+.
T Consensus 156 ~~~~~~R~~Gf~~~l~~~g~~ 176 (305)
T 3huu_A 156 YAVTEDRSVGFKQYCDDVKIS 176 (305)
T ss_dssp BHHHHHHHHHHHHHHHHTTCC
T ss_pred cchhHHHHHHHHHHHHHcCCC
Confidence 2 345666666665555544
No 97
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=87.52 E-value=0.24 Score=34.02 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=29.0
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
++..++||.++.=+.....++..+++|+|+.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIstG 61 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSG 61 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcHH
Confidence 47889999999888888999999999999986
No 98
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=86.90 E-value=4.3 Score=27.48 Aligned_cols=90 Identities=4% Similarity=-0.067 Sum_probs=54.1
Q ss_pred HhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 9 QLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 9 ~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
+...++.++|- |...... ......++|++..+... . . .-.+...+..-+...++.+...|.++++++...
T Consensus 54 l~~~~vdgiI~~~~~~~~~----~~l~~~~~pvV~~~~~~--~--~-~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~ 124 (255)
T 1byk_A 54 LKRRNIDGVVLFGFTGITE----EMLAHWQSSLVLLARDA--K--G-FASVCYDDEGAIKILMQRLYDQGHRNISYLGVP 124 (255)
T ss_dssp HHTTTCCEEEEECCTTCCT----TTSGGGSSSEEEESSCC--S--S-CEEEEECHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred HHhcCCCEEEEecCccccH----HHHHhcCCCEEEEcccc--C--C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 33456776654 3222211 12345689998876422 1 1 235666766677778887777799999999853
Q ss_pred --C--cchhhHHHHHhCCCCCCce
Q psy18065 88 --D--NGLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 88 --~--~~~~~l~~l~~~~~~~~~~ 107 (149)
+ ....+.+.+.+.+++.|+.
T Consensus 125 ~~~~~~~~~R~~gf~~al~~~g~~ 148 (255)
T 1byk_A 125 HSDVTTGKRRHEAYLAFCKAHKLH 148 (255)
T ss_dssp TTSTTTTHHHHHHHHHHHHHTTCC
T ss_pred CCCcccHHHHHHHHHHHHHHcCCC
Confidence 2 2456666666665555554
No 99
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=86.57 E-value=1.7 Score=30.96 Aligned_cols=92 Identities=8% Similarity=0.027 Sum_probs=56.7
Q ss_pred HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
.+...++.+|| ....... ..+...++|++..+..... . ...+.+.+...+...++.+...|-++++++...
T Consensus 111 ~l~~~~vdgiI-~~~~~~~----~~l~~~~iPvV~~~~~~~~-~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 181 (330)
T 3ctp_A 111 VLQSHRVAGII-ASRSQCE----DEYANIDIPVVAFENHILD-N---IITISSDNYNGGRMAFDHLYEKGCRKILHIKGP 181 (330)
T ss_dssp HHHHTTCSEEE-EETCCCS----GGGTTCCSCEEEESSCCCT-T---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred HHHhCCCCEEE-ECCCCCH----HHHHhcCCCEEEEeccCCC-C---CCEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 34456788888 3322221 2245678999987643222 2 124556666667777887766799999999865
Q ss_pred C---cchhhHHHHHhCCCCCCceE
Q psy18065 88 D---NGLFKLQELVKTPPTLKTEM 108 (149)
Q Consensus 88 ~---~~~~~l~~l~~~~~~~~~~v 108 (149)
. ....+.+.+.+.+++.|+.+
T Consensus 182 ~~~~~~~~R~~Gf~~al~~~g~~~ 205 (330)
T 3ctp_A 182 EVFEATELRYKGFLDGARAKDLEI 205 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccCccHHHHHHHHHHHHHHcCCCc
Confidence 3 23456666666655556544
No 100
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=86.28 E-value=7.4 Score=27.90 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=52.1
Q ss_pred HhhCCcEEEE--cCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065 9 QLQNGVQALF--GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE 86 (149)
Q Consensus 9 ~~~~~v~aii--Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~ 86 (149)
+...++.++| +|... ...+...+...++|++..+.... ...+ .+...+..-+...++.+...|.++++++..
T Consensus 114 l~~~~vdGiIi~~~~~~--~~~~~~~~~~~~iPvV~i~~~~~-~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g 187 (349)
T 1jye_A 114 LLAQRVSGLIINYPLDD--QDAIAVEAACTNVPALFLDVSDQ-TPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAG 187 (349)
T ss_dssp HHTTTCSCEEEESCCCH--HHHHHHHHHTTTSCEEESSSCTT-SSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred HHHCCCCEEEEecCCCC--hhHHHHHHhhCCCCEEEEcccCC-CCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 3455666655 34322 12222334457899998753221 1122 344555556666677666679999999986
Q ss_pred c-Cc--chhhHHHHHhCCCCCCce
Q psy18065 87 E-DN--GLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 87 ~-~~--~~~~l~~l~~~~~~~~~~ 107 (149)
. +. ...+.+.+.+.+++.|+.
T Consensus 188 ~~~~~~~~~R~~Gf~~al~~~gi~ 211 (349)
T 1jye_A 188 PLSSVSARLRLAGWHKYLTRNQIQ 211 (349)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCccHHHHHHHHHHHHHHcCCC
Confidence 4 22 345666666655555553
No 101
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=85.53 E-value=8.3 Score=27.78 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=43.8
Q ss_pred hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEe
Q psy18065 10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVY 85 (149)
Q Consensus 10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~ 85 (149)
...++.+||--........+. .+...++|+|..+........+ .+...+..-+...++.|...|-++++++.
T Consensus 125 ~~~~vdGiIi~~~~~~~~~~~-~l~~~~iPvV~i~~~~~~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~ 196 (366)
T 3h5t_A 125 NNAAVDGVVIYSVAKGDPHID-AIRARGLPAVIADQPAREEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILS 196 (366)
T ss_dssp HTCCCSCEEEESCCTTCHHHH-HHHHHTCCEEEESSCCSCTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEE
T ss_pred HhCCCCEEEEecCCCChHHHH-HHHHCCCCEEEECCccCCCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEe
Confidence 345565555322222222333 3456699999876533222222 35566666778888888778999999998
No 102
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=85.37 E-value=8 Score=27.45 Aligned_cols=98 Identities=6% Similarity=-0.057 Sum_probs=57.5
Q ss_pred HHhhCCcEEEEcCCCCCc-HHHHHHhhcccCCCceee-ccC-CCC--CCcccEEEecCChhHHHHHHHHHHHh-cC-CcE
Q psy18065 8 RQLQNGVQALFGPSDALL-GPHVQSICEALDVPHMES-RLD-LEL--NSKEFSVNLYPSQKLLNAAFKDVIRF-LN-WTK 80 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~-~~~v~~~~~~~~iP~is~-~~~-~~~--~~~~~~~~~~p~~~~~~~ai~~ll~~-~~-W~~ 80 (149)
.+...++.+||-+..... ...+.. +...++|.+.. ... +.. +..+....+.+.+...+...++.+.. .| -++
T Consensus 99 ~l~~~~vdgiIi~~~~~~~~~~~~~-~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~ 177 (342)
T 1jx6_A 99 EALKSKSDYLIFTLDTTRHRKFVEH-VLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTY 177 (342)
T ss_dssp HHHHTTCSEEEECCSSSTTHHHHHH-HHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCE
T ss_pred HHHhcCCCEEEEeCChHhHHHHHHH-HHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCce
Confidence 344567888887554432 334443 44568999876 432 210 11122345667777777778887755 57 999
Q ss_pred EEEEeecC--cchhhHHHHHhCCCCCCc
Q psy18065 81 VAIVYEED--NGLFKLQELVKTPPTLKT 106 (149)
Q Consensus 81 v~vi~~~~--~~~~~l~~l~~~~~~~~~ 106 (149)
++++.... ....+.+.+.+.+++.|.
T Consensus 178 I~~i~~~~~~~~~~R~~Gf~~~l~~~~~ 205 (342)
T 1jx6_A 178 YSVLYFSEGYISDVRGDTFIHQVNRDNN 205 (342)
T ss_dssp EEEECCSTTHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCcchhhHHHHHHHHHHHhCCC
Confidence 99997553 233555666665555454
No 103
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=85.22 E-value=8.5 Score=27.63 Aligned_cols=95 Identities=11% Similarity=0.064 Sum_probs=58.4
Q ss_pred HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE- 87 (149)
Q Consensus 9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~- 87 (149)
+...++.++|-........ ....+...++|++..+..+... ....+...+..-+...++.|...|-++++++...
T Consensus 122 l~~~~vdGiI~~~~~~~~~-~~~~l~~~~iPvV~i~~~~~~~---~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~ 197 (355)
T 3e3m_A 122 MLRRRPEAMVLSYDGHTEQ-TIRLLQRASIPIVEIWEKPAHP---IGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKD 197 (355)
T ss_dssp HHHTCCSEEEEECSCCCHH-HHHHHHHCCSCEEEESSCCSSC---SSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred HHhCCCCEEEEeCCCCCHH-HHHHHHhCCCCEEEECCccCCC---CCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCc
Confidence 3455666665433322333 3344567799999875322111 1235667776677778888877899999999864
Q ss_pred C--c-chhhHHHHHhCCCCCCce
Q psy18065 88 D--N-GLFKLQELVKTPPTLKTE 107 (149)
Q Consensus 88 ~--~-~~~~l~~l~~~~~~~~~~ 107 (149)
+ . ...+.+.+.+.+++.|+.
T Consensus 198 ~~~~~~~~R~~Gf~~al~~~g~~ 220 (355)
T 3e3m_A 198 DDWTRGAARRAGFKRAMREAGLN 220 (355)
T ss_dssp CTTSHHHHHHHHHHHHHHHTTSC
T ss_pred ccChhHHHHHHHHHHHHHHCCcC
Confidence 2 2 346677777766655654
No 104
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=84.08 E-value=2.4 Score=29.42 Aligned_cols=71 Identities=10% Similarity=-0.039 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEE-ec-----------CCCchHHHHHH-H-HhCCCce
Q psy18065 67 AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIR-HA-----------NPSTYRNVLRE-I-RQKEIFN 132 (149)
Q Consensus 67 ~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~-~~-----------~~~d~~~~l~~-i-~~~~~~~ 132 (149)
.++++.++..|-++|+++.. +....-+.+.+.+...|+.+... .. ++..+.+.+++ + +..+++.
T Consensus 106 ~A~~~al~~~g~~rvglltp--y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ada 183 (240)
T 3ixl_A 106 TAVLNGLRALGVRRVALATA--YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDG 183 (240)
T ss_dssp HHHHHHHHHTTCSEEEEEES--SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSE
T ss_pred HHHHHHHHHhCCCEEEEEeC--ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCE
Confidence 35556666666677777754 22111111112222235544321 11 11346677777 7 7778999
Q ss_pred EEEecCc
Q psy18065 133 LIIDTST 139 (149)
Q Consensus 133 iil~~~~ 139 (149)
|++-|..
T Consensus 184 ivL~CT~ 190 (240)
T 3ixl_A 184 ILLSSGG 190 (240)
T ss_dssp EEEECTT
T ss_pred EEEeCCC
Confidence 9998854
No 105
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=80.58 E-value=13 Score=26.41 Aligned_cols=125 Identities=6% Similarity=-0.048 Sum_probs=62.5
Q ss_pred HHHhhCCcEEEEcCCCCCcHHHHHHhhccc-CCCceeeccCCC-CCCcccEEEecCChhHHHHHH----HHHHHhcCC-c
Q psy18065 7 CRQLQNGVQALFGPSDALLGPHVQSICEAL-DVPHMESRLDLE-LNSKEFSVNLYPSQKLLNAAF----KDVIRFLNW-T 79 (149)
Q Consensus 7 c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~-~iP~is~~~~~~-~~~~~~~~~~~p~~~~~~~ai----~~ll~~~~W-~ 79 (149)
-.+.++++.+||+..... ...+..++..+ ++|++....... ..+ ........ ..+..+ +..+..-|- +
T Consensus 56 ~~l~~~~~dgIi~~~~~~-~~~~~~~a~~~p~~p~v~id~~~~~~~~---~~~v~~d~-~~~~~lag~~a~~l~~~Gh~r 130 (318)
T 2fqx_A 56 SAFADENMGLVVACGSFL-VEAVIETSARFPKQKFLVIDAVVQDRDN---VVSAVFGQ-NEGSFLVGVAAALKAKEAGKS 130 (318)
T ss_dssp HHHHHTTCSEEEEESTTT-HHHHHHHHHHCTTSCEEEESSCCCSCTT---EEEEEECH-HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCCEEEECChhH-HHHHHHHHHHCCCCEEEEEcCccCCCCC---EEEEEech-HHHHHHHHHHHHHHhccCCCc
Confidence 345567788888744322 23355555544 799888653221 111 12222333 233233 455555576 8
Q ss_pred EEEEEeecC--cchhhHHHHHhCCCCCCc--eEEEEecCC-C---chHHHHHHHHhCCCceEEEe
Q psy18065 80 KVAIVYEED--NGLFKLQELVKTPPTLKT--EMYIRHANP-S---TYRNVLREIRQKEIFNLIID 136 (149)
Q Consensus 80 ~v~vi~~~~--~~~~~l~~l~~~~~~~~~--~v~~~~~~~-~---d~~~~l~~i~~~~~~~iil~ 136 (149)
+|++|...+ ....+...+.+.++..|. .+....... . .-.+..+.+.+.++++|+..
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~ 195 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQV 195 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEEC
Confidence 999997532 234555555555444343 332221111 1 23455566666677655443
No 106
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=79.29 E-value=1.1 Score=30.88 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=31.4
Q ss_pred HHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 4 ATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 4 ~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
+..|.......+++.||.++.=+.....++..+++|+++.+
T Consensus 21 ~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 21 RYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp HHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred HHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 34454333337899999999888888888899999999864
No 107
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=79.02 E-value=5.8 Score=29.56 Aligned_cols=69 Identities=7% Similarity=-0.072 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCC----CchHHHHHHHHhCCCceEEEecC
Q psy18065 68 AFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP----STYRNVLREIRQKEIFNLIIDTS 138 (149)
Q Consensus 68 ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~----~d~~~~l~~i~~~~~~~iil~~~ 138 (149)
.+-++++.+| +++.+|++..-.....+.+.+.+++ |+.+.+..+.+ ++..+....+++.+++.||-.+-
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 115 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFDALSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGG 115 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHHHHHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred HHHHHHHHcC-CEEEEEECchHHHHHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCC
Confidence 3556778889 9999998864322356667777777 87764444432 34667777788888888888774
No 108
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=78.78 E-value=14 Score=25.60 Aligned_cols=139 Identities=7% Similarity=0.079 Sum_probs=68.1
Q ss_pred HHhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccC-CCCCCc--ccEEEecCChhHHHHHHHHHH----HhcCC-
Q psy18065 8 RQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLD-LELNSK--EFSVNLYPSQKLLNAAFKDVI----RFLNW- 78 (149)
Q Consensus 8 ~~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~-~~~~~~--~~~~~~~p~~~~~~~ai~~ll----~~~~W- 78 (149)
.++..++.+||- |.+.......-..+...++|++..... +..... .....+.+.....+...++.+ .+-++
T Consensus 52 ~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~ 131 (306)
T 8abp_A 52 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWD 131 (306)
T ss_dssp HHHHTTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCC
Confidence 445567777654 333333344344566779999998742 221110 122345555555555555433 23332
Q ss_pred -cEEEEEe-ecC---cchhhHHHHHhCCCCCCc---eEEEEecCC---CchHHHHHHHHhCC--CceEEEecCc-hhHHH
Q psy18065 79 -TKVAIVY-EED---NGLFKLQELVKTPPTLKT---EMYIRHANP---STYRNVLREIRQKE--IFNLIIDTST-THISQ 144 (149)
Q Consensus 79 -~~v~vi~-~~~---~~~~~l~~l~~~~~~~~~---~v~~~~~~~---~d~~~~l~~i~~~~--~~~iil~~~~-~~~~~ 144 (149)
++++++. ... ....+.+.+.+.+++.|. .+....... ++-.+.+.++.++. .+.++++|.. ..+..
T Consensus 132 ~~~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g 211 (306)
T 8abp_A 132 VKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 211 (306)
T ss_dssp GGGEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHH
T ss_pred ccceEEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHH
Confidence 3888886 332 234556666665544332 232222221 23345555555443 4454556644 44444
Q ss_pred HH
Q psy18065 145 FF 146 (149)
Q Consensus 145 il 146 (149)
++
T Consensus 212 ~~ 213 (306)
T 8abp_A 212 GV 213 (306)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 109
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=78.73 E-value=5.4 Score=25.54 Aligned_cols=9 Identities=11% Similarity=0.582 Sum_probs=4.3
Q ss_pred EEEEEeecC
Q psy18065 80 KVAIVYEED 88 (149)
Q Consensus 80 ~v~vi~~~~ 88 (149)
++.++|...
T Consensus 6 kv~IvY~S~ 14 (159)
T 3fni_A 6 SIGVFYVSE 14 (159)
T ss_dssp EEEEEECTT
T ss_pred EEEEEEECC
Confidence 445555443
No 110
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=78.51 E-value=2.3 Score=29.79 Aligned_cols=92 Identities=5% Similarity=0.003 Sum_probs=54.1
Q ss_pred hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCC-CcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065 10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELN-SKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED 88 (149)
Q Consensus 10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~-~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~ 88 (149)
...++.+||-....... ....+...++|+|..+...... .. -.+...+..-+...++.+...|-++++++....
T Consensus 67 ~~~~vdGiIi~~~~~~~--~~~~~~~~~iPvV~~~~~~~~~~~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 141 (301)
T 3miz_A 67 QSHRIDGVLYVTMYRRI--VDPESGDVSIPTVMINCRPQTRELL---PSIEPDDYQGARDLTRYLLERGHRRIGYIRLNP 141 (301)
T ss_dssp HHTTCSEEEEEEEEEEE--CCCCCTTCCCCEEEEEEECSSTTSS---CEEEECHHHHHHHHHHHHHTTTCCSEEEEECCT
T ss_pred HhCCCCEEEEecCCccH--HHHHHHhCCCCEEEECCCCCCCCCC---CEEeeChHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 34566665532221111 2233556689999876433211 22 245666666778888888778999999998653
Q ss_pred -c--chhhHHHHHhCCCCCCc
Q psy18065 89 -N--GLFKLQELVKTPPTLKT 106 (149)
Q Consensus 89 -~--~~~~l~~l~~~~~~~~~ 106 (149)
. ...+.+.+.+.+++.|+
T Consensus 142 ~~~~~~~R~~Gf~~al~~~g~ 162 (301)
T 3miz_A 142 ILLGAELRLDAFRRTTSEFGL 162 (301)
T ss_dssp TSHHHHHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHHHHHHHHHHcCC
Confidence 2 34566666665554454
No 111
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=76.80 E-value=17 Score=25.59 Aligned_cols=123 Identities=11% Similarity=0.116 Sum_probs=67.1
Q ss_pred HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeecc-CCC------C-C-CcccEEEe--cCChhHHHHHHHHHHHh-
Q psy18065 8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRL-DLE------L-N-SKEFSVNL--YPSQKLLNAAFKDVIRF- 75 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~-~~~------~-~-~~~~~~~~--~p~~~~~~~ai~~ll~~- 75 (149)
++..+++.+|++-.+ ..+.++. ....++|.+..+. +|. + . ......-+ ..+ . ...+++++.
T Consensus 64 ~l~~~~~DlIiai~t-~aa~a~~--~~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~~~~~---~-~~~l~l~~~l 136 (302)
T 3lkv_A 64 QFVGENPDVLVGIAT-PTAQALV--SATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLSP---V-EQHVELIKEI 136 (302)
T ss_dssp HHHTTCCSEEEEESH-HHHHHHH--HHCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCCC---H-HHHHHHHHHH
T ss_pred HHHhcCCcEEEEcCC-HHHHHHH--hhcCCCCeEEEecCCcchhhhcccccCCCCcEEEEECCcC---H-HHHHHHHHHh
Confidence 455678888886322 2233333 3345799887652 221 1 1 11222222 222 2 234555543
Q ss_pred c-CCcEEEEEeecCc--chhhHHHHHhCCCCCCceEEEEecCC-CchHHHHHHHHhCCCceEEEecC
Q psy18065 76 L-NWTKVAIVYEEDN--GLFKLQELVKTPPTLKTEMYIRHANP-STYRNVLREIRQKEIFNLIIDTS 138 (149)
Q Consensus 76 ~-~W~~v~vi~~~~~--~~~~l~~l~~~~~~~~~~v~~~~~~~-~d~~~~l~~i~~~~~~~iil~~~ 138 (149)
+ +-++++++|+..+ .....+.+.+...+.|+.+....... .+....+..+... .+.+++..+
T Consensus 137 ~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~-~d~i~~~~d 202 (302)
T 3lkv_A 137 LPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEK-SDVIYALID 202 (302)
T ss_dssp STTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTT-CSEEEECSC
T ss_pred CCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCC-eeEEEEeCC
Confidence 3 7899999998743 33445556666666787765544433 5677777776554 455555443
No 112
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=76.14 E-value=16 Score=25.12 Aligned_cols=100 Identities=9% Similarity=0.002 Sum_probs=57.3
Q ss_pred HHhhCCcEEEEc-CCCCCc-HHHHHHhhcccCCCceeeccCCCCCC-----cccEEEecCChhHHHHHHHHHHHhc-C--
Q psy18065 8 RQLQNGVQALFG-PSDALL-GPHVQSICEALDVPHMESRLDLELNS-----KEFSVNLYPSQKLLNAAFKDVIRFL-N-- 77 (149)
Q Consensus 8 ~~~~~~v~aiiG-p~~s~~-~~~v~~~~~~~~iP~is~~~~~~~~~-----~~~~~~~~p~~~~~~~ai~~ll~~~-~-- 77 (149)
.++..++.++|- |..... ...+.. +...++|++.......... .++.-.+.+.+..-+...++.+... |
T Consensus 54 ~~~~~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~ 132 (288)
T 1gud_A 54 DLSNKNYKGIAFAPLSSVNLVMPVAR-AWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAE 132 (288)
T ss_dssp HHHTSSEEEEEECCSSSSTTHHHHHH-HHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHcCCCEEEEeCCChHHHHHHHHH-HHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCC
Confidence 344567887663 433322 233444 4457899998764321110 0111345667666677777766544 7
Q ss_pred CcEEEEEeec-Cc--chhhHHHHHhCCCCC-CceE
Q psy18065 78 WTKVAIVYEE-DN--GLFKLQELVKTPPTL-KTEM 108 (149)
Q Consensus 78 W~~v~vi~~~-~~--~~~~l~~l~~~~~~~-~~~v 108 (149)
-++++++... +. ...+.+.+.+.+++. |+.+
T Consensus 133 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~ 167 (288)
T 1gud_A 133 GGEVAIIEGKAGNASGEARRNGATEAFKKASQIKL 167 (288)
T ss_dssp CEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEE
T ss_pred CCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEE
Confidence 8999999754 22 345666677666555 6654
No 113
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=75.65 E-value=16 Score=24.84 Aligned_cols=97 Identities=14% Similarity=0.100 Sum_probs=54.6
Q ss_pred HhhCCcEEEEc-CCCCCc-HHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEEE
Q psy18065 9 QLQNGVQALFG-PSDALL-GPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAIV 84 (149)
Q Consensus 9 ~~~~~v~aiiG-p~~s~~-~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~vi 84 (149)
+...++.++|- |..... ...+. .+...++|++......... ...-.+...+..-+...++.+... |-++++++
T Consensus 53 l~~~~vdgiIi~~~~~~~~~~~~~-~~~~~~iPvV~i~~~~~~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i 129 (271)
T 2dri_A 53 LTVRGTKILLINPTDSDAVGNAVK-MANQANIPVITLDRQATKG--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 129 (271)
T ss_dssp HTTTTEEEEEECCSSTTTTHHHHH-HHHHTTCCEEEESSCCSSS--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHcCCCEEEEeCCChHHHHHHHH-HHHHCCCcEEEecCCCCCC--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 44567887664 333332 22333 3455789999876432211 111234556666666677766443 56899999
Q ss_pred eec-Cc--chhhHHHHHhCCCCCCceE
Q psy18065 85 YEE-DN--GLFKLQELVKTPPTLKTEM 108 (149)
Q Consensus 85 ~~~-~~--~~~~l~~l~~~~~~~~~~v 108 (149)
... +. ...+.+.+.+.+++.|+.+
T Consensus 130 ~g~~~~~~~~~R~~Gf~~al~~~g~~~ 156 (271)
T 2dri_A 130 QGIAGTSAARERGEGFQQAVAAHKFNV 156 (271)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHTCEE
T ss_pred ECCCCCccHhHHHHHHHHHHhcCCCEE
Confidence 754 22 3456666666655567654
No 114
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=75.07 E-value=16 Score=24.36 Aligned_cols=75 Identities=8% Similarity=0.093 Sum_probs=53.4
Q ss_pred EEEecCChhHHHHHHHHHHHhcCCcEEEEEee-c-CcchhhHHHHHhCCCCCCceEEEEecCC-CchHHHHHHHHhCCCc
Q psy18065 55 SVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE-E-DNGLFKLQELVKTPPTLKTEMYIRHANP-STYRNVLREIRQKEIF 131 (149)
Q Consensus 55 ~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~-~-~~~~~~l~~l~~~~~~~~~~v~~~~~~~-~d~~~~l~~i~~~~~~ 131 (149)
.+.+..+..+..+++....++. ++++++.- + -.+...+.+++.. .+....+.. +|..+.++++++.+.+
T Consensus 73 VV~I~~s~~Dil~al~~a~~~~--~kIavvg~~~~~~~~~~~~~ll~~------~i~~~~~~~~~e~~~~i~~l~~~G~~ 144 (196)
T 2q5c_A 73 SISIKVTRFDTMRAVYNAKRFG--NELALIAYKHSIVDKHEIEAMLGV------KIKEFLFSSEDEITTLISKVKTENIK 144 (196)
T ss_dssp EEEECCCHHHHHHHHHHHGGGC--SEEEEEEESSCSSCHHHHHHHHTC------EEEEEEECSGGGHHHHHHHHHHTTCC
T ss_pred EEEEcCCHhHHHHHHHHHHhhC--CcEEEEeCcchhhHHHHHHHHhCC------ceEEEEeCCHHHHHHHHHHHHHCCCe
Confidence 6778888877888887776654 48888754 4 3566666666644 455545543 6899999999999988
Q ss_pred eEEEec
Q psy18065 132 NLIIDT 137 (149)
Q Consensus 132 ~iil~~ 137 (149)
+||=..
T Consensus 145 vvVG~~ 150 (196)
T 2q5c_A 145 IVVSGK 150 (196)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 877543
No 115
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=74.88 E-value=9.3 Score=24.91 Aligned_cols=80 Identities=8% Similarity=0.009 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHHH
Q psy18065 66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQF 145 (149)
Q Consensus 66 ~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~i 145 (149)
+.......++++-+++.++-|.-..-...+.+++.+.-.|+.+.+..+ ++..+.+++-+..+.+.++++-++.++..+
T Consensus 15 GQV~t~W~k~~~~~~IiVvnD~vA~D~~~k~~lk~a~P~gvk~~i~sv--e~ai~~~~~~~~~~~~v~ll~k~p~d~~~l 92 (164)
T 1nrz_A 15 GQVTTVWSKVANAQRIIICNDDVFNDEVRRTLLRQAAPPGMKVNVVSL--EKAVAVYHNPQYQDETVFYLFTNPHDVLTM 92 (164)
T ss_dssp HHHHHHHHHHHTCSEEEEECHHHHTCHHHHHHHHHTCCTTCEEEEECH--HHHHHHHTCGGGTTCEEEEEESSHHHHHHH
T ss_pred hhheeeeccccCCCEEEEeCccccCCHHHHHHHHhcCCCCCeEEEEEH--HHHHHHHhcccCCCceEEEEECCHHHHHHH
Confidence 455667889999999988866533334556677776666877765433 344455554444566788888888888887
Q ss_pred Hh
Q psy18065 146 FR 147 (149)
Q Consensus 146 l~ 147 (149)
.+
T Consensus 93 ve 94 (164)
T 1nrz_A 93 VR 94 (164)
T ss_dssp HT
T ss_pred HH
Confidence 64
No 116
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=72.70 E-value=9.1 Score=24.92 Aligned_cols=80 Identities=8% Similarity=0.081 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHHH
Q psy18065 66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQF 145 (149)
Q Consensus 66 ~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~i 145 (149)
+.......++++-+++.++-|.-..-...+.+++.+.-.|+.+.+..+ ++..+.+++-+..+.+.++++-++.++..+
T Consensus 16 GQV~t~W~~~~~~~~IiVvnD~vA~D~~~k~~lk~a~P~gvk~~i~sv--e~ai~~~~~~~~~~~~v~ll~k~p~d~~~l 93 (163)
T 1ble_A 16 GQILTRWIKVHAADRIIVVSDDIAQDEMRKTLILSVAPSNVKASAVSV--SKMAKAFHSPRYEGVTAMLLFENPSDIVSL 93 (163)
T ss_dssp TTHHHHHHHHHTCSEEEEECHHHHHCHHHHHHHHTSSCTTSEEEEECH--HHHHHHHHCSTTTTCEEEEEESSSHHHHHH
T ss_pred hhheeeeccccCCCEEEEeCccccCCHHHHHHHHhhCCCCCeEEEEEH--HHHHHHHhcccCCCceEEEEECCHHHHHHH
Confidence 445566788899999988866433334566777777667877765433 344445544434566778888888888887
Q ss_pred Hh
Q psy18065 146 FR 147 (149)
Q Consensus 146 l~ 147 (149)
.+
T Consensus 94 ve 95 (163)
T 1ble_A 94 IE 95 (163)
T ss_dssp HT
T ss_pred HH
Confidence 64
No 117
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=72.51 E-value=20 Score=24.52 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=50.7
Q ss_pred EEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC--cchhhHHHHHhCCCCCCceEEEEecCC-CchHHHHHHHHhCCCc
Q psy18065 55 SVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED--NGLFKLQELVKTPPTLKTEMYIRHANP-STYRNVLREIRQKEIF 131 (149)
Q Consensus 55 ~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~--~~~~~l~~l~~~~~~~~~~v~~~~~~~-~d~~~~l~~i~~~~~~ 131 (149)
.+.+.++..+..+++....++. ++++++.-.+ .+...+.+++.. .+....+.. +|..+.++++++.+.+
T Consensus 85 VV~I~vs~~Dil~aL~~a~~~~--~kIavVg~~~~~~~~~~i~~ll~~------~i~~~~~~~~ee~~~~i~~l~~~G~~ 156 (225)
T 2pju_A 85 VILIKPSGYDVLQFLAKAGKLT--SSIGVVTYQETIPALVAFQKTFNL------RLDQRSYITEEDARGQINELKANGTE 156 (225)
T ss_dssp EEEECCCHHHHHHHHHHTTCTT--SCEEEEEESSCCHHHHHHHHHHTC------CEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred EEEecCCHHHHHHHHHHHHhhC--CcEEEEeCchhhhHHHHHHHHhCC------ceEEEEeCCHHHHHHHHHHHHHCCCC
Confidence 6777788777777777665543 5888875443 455555555543 455545543 6889999999999988
Q ss_pred eEEEec
Q psy18065 132 NLIIDT 137 (149)
Q Consensus 132 ~iil~~ 137 (149)
+||=..
T Consensus 157 vVVG~~ 162 (225)
T 2pju_A 157 AVVGAG 162 (225)
T ss_dssp EEEESH
T ss_pred EEECCH
Confidence 877543
No 118
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=71.23 E-value=10 Score=24.77 Aligned_cols=80 Identities=9% Similarity=0.041 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHHH
Q psy18065 66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQF 145 (149)
Q Consensus 66 ~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~i 145 (149)
+.......++++-+++.++-|.-..-...+.+++.+.-.|+.+.+..+ ++..+.+++-+..+.++++++-++.++..+
T Consensus 18 GQV~t~W~~~~~~~~IiVvnD~vA~D~~~k~~lk~a~P~gvk~~i~sv--e~ai~~~~~~~~~~~~v~ll~k~p~d~~~l 95 (165)
T 1vsq_C 18 GQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTAHVVDV--AKMIRVYNNPKYAGERVMLLFTNPTDVERL 95 (165)
T ss_dssp TTHHHHHHHHTTCSEEEEECHHHHTCHHHHHHHHHTCCTTCEEEEECH--HHHHHHHTCGGGTTCEEEEEESSHHHHHHH
T ss_pred hheeeeeccccCCCEEEEeCccccCCHHHHHHHHhcCCCCCeEEEEEH--HHHHHHHhccccCCcEEEEEECCHHHHHHH
Confidence 445567889999999988866533334556677776666877665433 344455554444566778888888888887
Q ss_pred Hh
Q psy18065 146 FR 147 (149)
Q Consensus 146 l~ 147 (149)
.+
T Consensus 96 ve 97 (165)
T 1vsq_C 96 VE 97 (165)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 119
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=70.26 E-value=11 Score=23.95 Aligned_cols=18 Identities=11% Similarity=-0.108 Sum_probs=9.0
Q ss_pred ChhHHHHHHHHHHHhcCC
Q psy18065 61 SQKLLNAAFKDVIRFLNW 78 (149)
Q Consensus 61 ~~~~~~~ai~~ll~~~~W 78 (149)
+....+..+++-+..-|-
T Consensus 13 nT~~~A~~ia~~l~~~g~ 30 (161)
T 3hly_A 13 YSDRLSQAIGRGLVKTGV 30 (161)
T ss_dssp THHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 344455555555544443
No 120
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=70.14 E-value=25 Score=24.58 Aligned_cols=94 Identities=12% Similarity=-0.002 Sum_probs=54.5
Q ss_pred HHhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh-------cCCc
Q psy18065 8 RQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF-------LNWT 79 (149)
Q Consensus 8 ~~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~-------~~W~ 79 (149)
.++..++.+||- |..+.........+...++|+|........ .......+.......+...++.+.. .|-+
T Consensus 54 ~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~-~~~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~ 132 (330)
T 3uug_A 54 NMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRN-SGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPF 132 (330)
T ss_dssp HHHHHTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCS-CTTCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCE
T ss_pred HHHHcCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCC-CCceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCce
Confidence 344556777664 444333344445566779999998754321 1122234555666677777776655 5888
Q ss_pred EEEEEeec-C--cchhhHHHHHhCCC
Q psy18065 80 KVAIVYEE-D--NGLFKLQELVKTPP 102 (149)
Q Consensus 80 ~v~vi~~~-~--~~~~~l~~l~~~~~ 102 (149)
+++++... + ....+.+.+.+.++
T Consensus 133 ~i~~i~g~~~~~~~~~R~~Gf~~al~ 158 (330)
T 3uug_A 133 NIELFGGSPDDNNAFFFYDGAMSVLK 158 (330)
T ss_dssp EEEECBCCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHHHHHHHHHHHHH
Confidence 99998654 2 23455555555443
No 121
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=68.35 E-value=9.8 Score=28.19 Aligned_cols=72 Identities=7% Similarity=-0.040 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCcEEEEEeecCcchh-hHHHHHhCCCCCCceEEE-EecC--C--CchHHHHHHHHhCCCceEEEecC
Q psy18065 67 AAFKDVIRFLNWTKVAIVYEEDNGLF-KLQELVKTPPTLKTEMYI-RHAN--P--STYRNVLREIRQKEIFNLIIDTS 138 (149)
Q Consensus 67 ~ai~~ll~~~~W~~v~vi~~~~~~~~-~l~~l~~~~~~~~~~v~~-~~~~--~--~d~~~~l~~i~~~~~~~iil~~~ 138 (149)
..+.++++.+|.+++.++++..-... ..+.+.+.+++.|+.+.. ..+. + ++..+.++.+++.+++.||-.+-
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 97 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGG 97 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 34566778889999999998632111 345555555556766543 3342 2 35677788888888898888763
No 122
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=67.50 E-value=11 Score=27.35 Aligned_cols=81 Identities=11% Similarity=0.009 Sum_probs=47.5
Q ss_pred ccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEe-cCC---CchHHHHHHHHhC
Q psy18065 53 EFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH-ANP---STYRNVLREIRQK 128 (149)
Q Consensus 53 ~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~-~~~---~d~~~~l~~i~~~ 128 (149)
|+-+...+... ..+.++++.++.+++.++++..-.....+.+.+.+++.|+.+.... .+. ++..+. +.+++.
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~ 87 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPA 87 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCT
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhc
Confidence 34445555421 2355677778889999999864222344556555555676654332 332 234555 666667
Q ss_pred CCceEEEec
Q psy18065 129 EIFNLIIDT 137 (149)
Q Consensus 129 ~~~~iil~~ 137 (149)
+.+.||-.+
T Consensus 88 ~~d~IIavG 96 (354)
T 3ce9_A 88 EVDALIGIG 96 (354)
T ss_dssp TCCEEEEEE
T ss_pred CCCEEEEEC
Confidence 778888665
No 123
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=67.17 E-value=3.5 Score=28.49 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=28.3
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
.-.+++||.++.=+.....++..+++|+|+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~g 40 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQISTG 40 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeech
Confidence 35799999999888888889999999999975
No 124
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=66.59 E-value=11 Score=27.89 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCcEEEEEeecCcchh---hHHHHHhCCCCCCceEEE-EecCC----CchHHHHHHHHhCCCceEEEec
Q psy18065 68 AFKDVIRFLNWTKVAIVYEEDNGLF---KLQELVKTPPTLKTEMYI-RHANP----STYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 68 ai~~ll~~~~W~~v~vi~~~~~~~~---~l~~l~~~~~~~~~~v~~-~~~~~----~d~~~~l~~i~~~~~~~iil~~ 137 (149)
.+.++++.+|.+++.++++..-... ..+.+.+.+++.|+.+.. ..+.+ +...+.++.+++.+++.||-.+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 100 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVG 100 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3556777789999999998642222 345555554445666533 23322 3467778888899999988765
No 125
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=63.98 E-value=19 Score=25.98 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=35.7
Q ss_pred EEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC--cchhhHHHHHhCCCCCCceEEEEecC-CCchHHHHHHHHhCCCc
Q psy18065 55 SVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED--NGLFKLQELVKTPPTLKTEMYIRHAN-PSTYRNVLREIRQKEIF 131 (149)
Q Consensus 55 ~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~--~~~~~l~~l~~~~~~~~~~v~~~~~~-~~d~~~~l~~i~~~~~~ 131 (149)
+|.+.++.+.....+.. + +++.+|+.-. .+ ...+.+.+.+.+.|+.+.+.... ..+..++..+....+.+
T Consensus 12 ~~~~~~~~~~~~~~m~~----~--~~~~vi~Np~sg~~-~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d 84 (332)
T 2bon_A 12 LYKKAGSETLYIQGMAE----F--PASLLILNGKSTDN-LPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVA 84 (332)
T ss_dssp ------------------------CCEEEEECSSSTTC-HHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCS
T ss_pred eeeeccCcchhhhhhhh----c--ceEEEEECCCCCCC-chHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCC
Confidence 45555555444444332 1 5678877642 23 44455555555567666554332 34555555555555566
Q ss_pred eEEEecCchhHHH
Q psy18065 132 NLIIDTSTTHISQ 144 (149)
Q Consensus 132 ~iil~~~~~~~~~ 144 (149)
.||+.+-.-.+..
T Consensus 85 ~vvv~GGDGTl~~ 97 (332)
T 2bon_A 85 TVIAGGGDGTINE 97 (332)
T ss_dssp EEEEEESHHHHHH
T ss_pred EEEEEccchHHHH
Confidence 7777664443333
No 126
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=63.63 E-value=14 Score=24.84 Aligned_cols=71 Identities=11% Similarity=0.003 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCcEEEEEeecCcc-hhhHHHHHhCCCCCCceEEEEe-cC-----------CCchHHHHHHHHhC--CC
Q psy18065 66 NAAFKDVIRFLNWTKVAIVYEEDNG-LFKLQELVKTPPTLKTEMYIRH-AN-----------PSTYRNVLREIRQK--EI 130 (149)
Q Consensus 66 ~~ai~~ll~~~~W~~v~vi~~~~~~-~~~l~~l~~~~~~~~~~v~~~~-~~-----------~~d~~~~l~~i~~~--~~ 130 (149)
..++++.++..|=++|+++...... ....++.++. .|+.+.... .+ +..+.+.++++.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt~~~~~~~~~~~~~l~~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGTPYIKERTLEEVEWWRN---KGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHHHT---TTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEeCCchHHHHHHHHHHHh---CCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 5677777777788999999633222 1233334433 466653321 11 12355566666667 89
Q ss_pred ceEEEecCc
Q psy18065 131 FNLIIDTST 139 (149)
Q Consensus 131 ~~iil~~~~ 139 (149)
+.||+.|..
T Consensus 173 daIvLgCT~ 181 (223)
T 2dgd_A 173 DAVYIACTA 181 (223)
T ss_dssp SEEEECCTT
T ss_pred CEEEEeCCc
Confidence 999999854
No 127
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=63.09 E-value=9 Score=24.97 Aligned_cols=80 Identities=11% Similarity=0.046 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHH
Q psy18065 65 LNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQ 144 (149)
Q Consensus 65 ~~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~ 144 (149)
.+. .....++++-+++.++-|.-..-...+.+++.+.-.|+.+.+..+ ++..+.+++-+ .+.+.++++-++.++..
T Consensus 18 HGQ-~~~W~k~~~~~~IiVvnD~vA~D~~~k~~lk~A~P~gvk~~i~sv--e~ai~~~~~~~-~~~~v~il~k~p~d~~~ 93 (163)
T 3p3v_A 18 HGQ-GQLWVKFLNCNTVIVANDAVSEDKIQQSLMKTVIPSSIAIRFFSI--QKVIDIIHKAS-PAQSIFIVVKDLQDAKL 93 (163)
T ss_dssp GST-HHHHHHHTTCSEEEEECHHHHHCHHHHHHHGGGSCTTSEEEEECH--HHHHHHGGGCC-TTCEEEEEESSHHHHHH
T ss_pred hhh-hhhhhhhcCCCEEEEEcccccCCHHHHHHHHhhCCCCceEEEEEH--HHHHHHHhccC-CCceEEEEECCHHHHHH
Confidence 355 677889999999988866533334556677766666877765433 33344443332 45567777778888888
Q ss_pred HHhh
Q psy18065 145 FFRA 148 (149)
Q Consensus 145 il~q 148 (149)
+.+.
T Consensus 94 lv~~ 97 (163)
T 3p3v_A 94 LVEG 97 (163)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7653
No 128
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=62.57 E-value=15 Score=25.88 Aligned_cols=71 Identities=17% Similarity=0.114 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCcEEEEEeecCcch-hhHHHHHhCCCCCCceEEEE-ecC-----------CCchHHHHHHHHhCCCce
Q psy18065 66 NAAFKDVIRFLNWTKVAIVYEEDNGL-FKLQELVKTPPTLKTEMYIR-HAN-----------PSTYRNVLREIRQKEIFN 132 (149)
Q Consensus 66 ~~ai~~ll~~~~W~~v~vi~~~~~~~-~~l~~l~~~~~~~~~~v~~~-~~~-----------~~d~~~~l~~i~~~~~~~ 132 (149)
..+.++.++..|-++|+++....... ...++.++. .|+.+... ..+ ...+.+.++++...+++.
T Consensus 134 ~~A~~~al~~~g~~rvgvltp~~~~~~~~~~~~l~~---~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gada 210 (273)
T 2xed_A 134 AGALVEGLRALDAQRVALVTPYMRPLAEKVVAYLEA---EGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDA 210 (273)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHHH---TTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSE
T ss_pred HHHHHHHHHHcCCCeEEEEcCChhhhHHHHHHHHHH---CCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCE
Confidence 34556666667778999995332211 233333332 36554322 111 123556666776778999
Q ss_pred EEEe-cCc
Q psy18065 133 LIID-TST 139 (149)
Q Consensus 133 iil~-~~~ 139 (149)
||+. |..
T Consensus 211 IvLg~CT~ 218 (273)
T 2xed_A 211 LVISCAVQ 218 (273)
T ss_dssp EEEESSSS
T ss_pred EEEcCCCC
Confidence 9999 854
No 129
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=62.03 E-value=9.3 Score=25.53 Aligned_cols=81 Identities=4% Similarity=-0.046 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHHH
Q psy18065 66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQF 145 (149)
Q Consensus 66 ~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~i 145 (149)
++......++++-+++.++-|.-..-...+.+++.+.-.|+.+.+..+ ++..+.+++-+..+.++++++-++.++..+
T Consensus 36 GQVat~W~k~~~~~~IiVvnD~vA~D~~~k~~lkmA~P~gvk~~i~sv--e~ai~~~~~~~~~~~~v~il~k~p~d~~~l 113 (187)
T 3lfj_A 36 GQVMTRWMKGFPEASIVIIDDELAVDEFMKNIYTMAAPPGVKVKVFGV--DAALKEWSQKTSVEEKVFLLFKNIDTCKRV 113 (187)
T ss_dssp TTHHHHHHTTCTTCEEEEECHHHHHCHHHHHHHHHTSCTTCCEEEECH--HHHHHHHHSBCSSCEEEEEEESSHHHHHHH
T ss_pred hhhhheeccccCCCEEEEECccccCCHHHHHHHHHhccCCCeEEEEEH--HHHHHHHhCCccCCceEEEEECCHHHHHHH
Confidence 556677889999999988866533334556666666556777665332 233344443333445677777788888887
Q ss_pred Hhh
Q psy18065 146 FRA 148 (149)
Q Consensus 146 l~q 148 (149)
++.
T Consensus 114 ve~ 116 (187)
T 3lfj_A 114 MDG 116 (187)
T ss_dssp HHT
T ss_pred HHc
Confidence 653
No 130
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=61.90 E-value=13 Score=25.37 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=6.9
Q ss_pred HHHHHHHHHhcCCcE
Q psy18065 66 NAAFKDVIRFLNWTK 80 (149)
Q Consensus 66 ~~ai~~ll~~~~W~~ 80 (149)
..++-+.++..||+-
T Consensus 27 ~~gi~~~~~~~g~~~ 41 (277)
T 3e61_A 27 ARGVEDVALAHGYQV 41 (277)
T ss_dssp HHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHCCCEE
Confidence 334444444555543
No 131
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=61.44 E-value=19 Score=24.52 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=12.2
Q ss_pred HHHHHHHHhCCCceEEEec
Q psy18065 119 RNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 119 ~~~l~~i~~~~~~~iil~~ 137 (149)
.+.++.+++.+.-+|+++.
T Consensus 75 ~~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 75 PQTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHCCCCEEEEec
Confidence 5666777766665666554
No 132
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=60.85 E-value=18 Score=26.42 Aligned_cols=81 Identities=7% Similarity=-0.106 Sum_probs=47.4
Q ss_pred ccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCC----CchHHHHHHHHhC
Q psy18065 53 EFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP----STYRNVLREIRQK 128 (149)
Q Consensus 53 ~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~----~d~~~~l~~i~~~ 128 (149)
|+.+...+.. ...+.++++.+| +++.++++..-.....+.+.+.++..|+.+.+..++. ++..+..+.+++.
T Consensus 10 p~~i~~G~g~---~~~l~~~l~~~g-~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~ 85 (370)
T 1jq5_A 10 PAKYVQGKNV---ITKIANYLEGIG-NKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKA 85 (370)
T ss_dssp CSEEEEETTG---GGGHHHHHTTTC-SEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHT
T ss_pred CCeEEECcCH---HHHHHHHHHHcC-CeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhc
Confidence 3334455542 123556677778 9999998753211234555555545566653323322 2456677778888
Q ss_pred CCceEEEec
Q psy18065 129 EIFNLIIDT 137 (149)
Q Consensus 129 ~~~~iil~~ 137 (149)
+.+.||-.+
T Consensus 86 ~~d~IIavG 94 (370)
T 1jq5_A 86 EAAIVIGVG 94 (370)
T ss_dssp TCSEEEEEE
T ss_pred CCCEEEEeC
Confidence 888888765
No 133
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=60.24 E-value=50 Score=24.51 Aligned_cols=144 Identities=8% Similarity=-0.013 Sum_probs=83.6
Q ss_pred HHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcc----cEEEecCChhHHHHHHHHHHHhcCCc
Q psy18065 5 TMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKE----FSVNLYPSQKLLNAAFKDVIRFLNWT 79 (149)
Q Consensus 5 ~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~----~~~~~~p~~~~~~~ai~~ll~~~~W~ 79 (149)
...++.. .++.+||.-.........-..+...+++.|-....+..+... .-+.+...+..-+...+..|...|-+
T Consensus 78 ~I~~~a~~~gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~di~V~~Dn~~Ggy~A~~~Li~~Ghk 157 (371)
T 3qi7_A 78 KIVKLADDKEVQAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVDVNLGVSAEERGKVLAERSKEMGAK 157 (371)
T ss_dssp HHHGGGGCTTEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSSEEEECCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHhhcCCCeEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCceEEEeChHHHHHHHHHHHHHCCCC
Confidence 3444444 567787765544333444556777888877654332211100 01246666666677777888899999
Q ss_pred EEEEEeecC---c--chhhHHHHHhCCCCCCceEEEEecC-C--CchHHHHHH-H--------HhCCCceEEEecCchhH
Q psy18065 80 KVAIVYEED---N--GLFKLQELVKTPPTLKTEMYIRHAN-P--STYRNVLRE-I--------RQKEIFNLIIDTSTTHI 142 (149)
Q Consensus 80 ~v~vi~~~~---~--~~~~l~~l~~~~~~~~~~v~~~~~~-~--~d~~~~l~~-i--------~~~~~~~iil~~~~~~~ 142 (149)
++++|.... . ...|++.+.+.+++.|+.+.....+ + ++-....++ | ++.+...-|+.++...+
T Consensus 158 ~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~t~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFatND~mA 237 (371)
T 3qi7_A 158 AFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQVNTPNINTEEDKNKVKQFLNEDIEKQVKKYGKDINVFGVNEYMD 237 (371)
T ss_dssp CEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSTHHHHHHHHHHHHHHHHHHHHHCSCCEEEESSHHHH
T ss_pred EEEEEeccccccchhHHHHHHHHHHHHHHcCCCceeecCCCCchHHHHHHHHHHHhccccchhhccCCCcEEEECCHHHH
Confidence 999997532 2 3347778888888888876543332 1 212222222 2 23333356667777777
Q ss_pred HHHHhh
Q psy18065 143 SQFFRA 148 (149)
Q Consensus 143 ~~il~q 148 (149)
..++++
T Consensus 238 iG~ika 243 (371)
T 3qi7_A 238 EVILTK 243 (371)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 134
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=58.98 E-value=19 Score=25.07 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeecCcc--hhhHHHHHhCCCCCCce-EEEEecCCCchHHHHHHHHhCCCceEEEecC
Q psy18065 64 LLNAAFKDVIRFLNWTKVAIVYEEDNG--LFKLQELVKTPPTLKTE-MYIRHANPSTYRNVLREIRQKEIFNLIIDTS 138 (149)
Q Consensus 64 ~~~~ai~~ll~~~~W~~v~vi~~~~~~--~~~l~~l~~~~~~~~~~-v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~ 138 (149)
....++-+.++..||+-+..-.+++.. ...++.+... ++. +.+...+.....+.++.+++.+.-+|.++..
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~----~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 92 (313)
T 3m9w_A 19 KDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINR----GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRM 92 (313)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHT----TCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHc----CCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCc
Confidence 355666666777777544322211211 1223333322 222 1122222334456777777776656655543
No 135
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=58.59 E-value=22 Score=23.98 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=10.7
Q ss_pred HHHHHHHHhCCCceEEEec
Q psy18065 119 RNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 119 ~~~l~~i~~~~~~~iil~~ 137 (149)
.+.++.+++.+.-+|.++.
T Consensus 72 ~~~~~~~~~~~iPvV~~~~ 90 (272)
T 3o74_A 72 DDSYRELQDKGLPVIAIDR 90 (272)
T ss_dssp CCHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHcCCCEEEEcc
Confidence 3455566666655555544
No 136
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=57.89 E-value=8.8 Score=25.54 Aligned_cols=32 Identities=9% Similarity=0.004 Sum_probs=28.2
Q ss_pred hCCcEEEEcCCCCCcHHHHHHhhcccCCCcee
Q psy18065 11 QNGVQALFGPSDALLGPHVQSICEALDVPHME 42 (149)
Q Consensus 11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 42 (149)
...+.+|.|+.++.-+.....++..+++|++.
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 44689999999999998888899999999986
No 137
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=57.10 E-value=6.4 Score=26.21 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=27.4
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
.+.+|+||.++.=+....-+++.+++|++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g 37 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSG 37 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCc
Confidence 47999999999888888888888999998754
No 138
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=56.58 E-value=21 Score=26.77 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=35.0
Q ss_pred cEEEEEeecCcch--hhHHHHHhCCCCCCceEEEEecC---CCchHHHHHHHHhCCCceEEEecC
Q psy18065 79 TKVAIVYEEDNGL--FKLQELVKTPPTLKTEMYIRHAN---PSTYRNVLREIRQKEIFNLIIDTS 138 (149)
Q Consensus 79 ~~v~vi~~~~~~~--~~l~~l~~~~~~~~~~v~~~~~~---~~d~~~~l~~i~~~~~~~iil~~~ 138 (149)
++|+++|...+|. ...+.+.+.+.+.|+...+.++. ..+..+++..+.+. +.|++-++
T Consensus 266 ~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~--~~ivlGsp 328 (410)
T 4dik_A 266 GKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDS--EALIFGVS 328 (410)
T ss_dssp TEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTC--SEEEEEEC
T ss_pred cceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhC--CeEEEEeC
Confidence 4688888887764 34555555555667665543332 24667777776665 35555444
No 139
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=55.95 E-value=17 Score=24.87 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=11.5
Q ss_pred hHHHHHHHHhCCCceEEEec
Q psy18065 118 YRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 118 ~~~~l~~i~~~~~~~iil~~ 137 (149)
..+.++.+++.+.-+|.++.
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 75 LNPWLQKINDAGIPLFTVDT 94 (291)
T ss_dssp HHHHHHHHHHTTCCEEEESC
T ss_pred hHHHHHHHHHCCCcEEEecC
Confidence 44556666666655555544
No 140
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=55.28 E-value=28 Score=25.86 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCcEEEEEeecC-cch-hhHHHHHhCCCCCCceEEE-EecC--C--CchHHHHHHHHhCCCceEEEec
Q psy18065 68 AFKDVIRFLNWTKVAIVYEED-NGL-FKLQELVKTPPTLKTEMYI-RHAN--P--STYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 68 ai~~ll~~~~W~~v~vi~~~~-~~~-~~l~~l~~~~~~~~~~v~~-~~~~--~--~d~~~~l~~i~~~~~~~iil~~ 137 (149)
.+.+.++.+|.+++.+|+++. ... ...+.+.+.+++.|+.+.. ..+. + +...+.++.+++.+++.||-.+
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG 109 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVG 109 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 355677778999999999743 111 1244444444445665543 2222 2 3467778888999999998765
No 141
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=53.53 E-value=23 Score=24.25 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCcEEEEEeecCcc--hhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecC
Q psy18065 65 LNAAFKDVIRFLNWTKVAIVYEEDNG--LFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTS 138 (149)
Q Consensus 65 ~~~ai~~ll~~~~W~~v~vi~~~~~~--~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~ 138 (149)
+..++-+.++..||+-+..-.+++.. ...++.+... .-.|+ .+......+..+.++.+++.+.-+|+++..
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~-~vdgi--I~~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 98 (293)
T 3l6u_A 26 LINAFKAEAKANKYEALVATSQNSRISEREQILEFVHL-KVDAI--FITTLDDVYIGSAIEEAKKAGIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHT-TCSEE--EEECSCTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHc-CCCEE--EEecCChHHHHHHHHHHHHcCCCEEEecCC
Confidence 45556666777787544332222211 1233333332 11222 122222344567778888777766666554
No 142
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=53.22 E-value=44 Score=24.47 Aligned_cols=82 Identities=10% Similarity=0.029 Sum_probs=47.9
Q ss_pred ccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC-cchh-hHHHHHhCCCCCCceEE-EEecCC----CchHHHHHHH
Q psy18065 53 EFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED-NGLF-KLQELVKTPPTLKTEMY-IRHANP----STYRNVLREI 125 (149)
Q Consensus 53 ~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~-~~~~-~l~~l~~~~~~~~~~v~-~~~~~~----~d~~~~l~~i 125 (149)
++-+...+.. ...+.++++.+| +++.+|++.. .... .++.+.+.+++.|+.+. +..+.+ ++..+..+.+
T Consensus 19 p~~i~~G~g~---~~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~ 94 (371)
T 1o2d_A 19 PTDVFFGEKI---LEKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERY 94 (371)
T ss_dssp CCEEEESTTH---HHHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHH
T ss_pred CceEEECcCH---HHHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH
Confidence 3445555542 234556666678 8999999863 2221 24444444444465543 333422 3567778888
Q ss_pred HhCCCceEEEecC
Q psy18065 126 RQKEIFNLIIDTS 138 (149)
Q Consensus 126 ~~~~~~~iil~~~ 138 (149)
++.+.+.||-.+-
T Consensus 95 ~~~~~d~IIavGG 107 (371)
T 1o2d_A 95 RNDSFDFVVGLGG 107 (371)
T ss_dssp TTSCCSEEEEEES
T ss_pred HhcCCCEEEEeCC
Confidence 8888888887653
No 143
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=52.76 E-value=40 Score=21.40 Aligned_cols=74 Identities=7% Similarity=0.133 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeecC-cc-----hhhHHHHHhCCCCCC--ce-EEEEecC---C--CchHHHHHHHHhCC
Q psy18065 64 LLNAAFKDVIRFLNWTKVAIVYEED-NG-----LFKLQELVKTPPTLK--TE-MYIRHAN---P--STYRNVLREIRQKE 129 (149)
Q Consensus 64 ~~~~ai~~ll~~~~W~~v~vi~~~~-~~-----~~~l~~l~~~~~~~~--~~-v~~~~~~---~--~d~~~~l~~i~~~~ 129 (149)
.|-..+-++....||.-+.++.|.+ .| ...++.+++..+... +. +.+..++ . .+...++..+++.+
T Consensus 26 ~Q~~~l~~~a~~~g~~i~~~~~D~g~Sg~~~~~Rp~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~~~~~~~~~~~l~~~g 105 (167)
T 3guv_A 26 AQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYG 105 (167)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCCSSSSSCCCHHHHHHHHHHHTCTTCCSEEEESCGGGTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEEEEeecCCCCCCcccCHHHHHHHHHHHcCCCCccEEEEEeCchhcCCHHHHHHHHHHHHHCC
Confidence 4566667777777998777665532 22 345677776654433 43 3344443 2 35667778888898
Q ss_pred CceEEEec
Q psy18065 130 IFNLIIDT 137 (149)
Q Consensus 130 ~~~iil~~ 137 (149)
++.+.+.-
T Consensus 106 v~l~~~~~ 113 (167)
T 3guv_A 106 VNLICVED 113 (167)
T ss_dssp CEEEETTT
T ss_pred CEEEEeeC
Confidence 77666644
No 144
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=51.99 E-value=19 Score=24.77 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=8.1
Q ss_pred HHHHHHHhCCCceEEEe
Q psy18065 120 NVLREIRQKEIFNLIID 136 (149)
Q Consensus 120 ~~l~~i~~~~~~~iil~ 136 (149)
+.++.+++.+.-+|+++
T Consensus 78 ~~~~~~~~~~iPvV~~~ 94 (291)
T 3egc_A 78 DYLRTELPKTFPIVAVN 94 (291)
T ss_dssp HHHHHSSCTTSCEEEES
T ss_pred HHHHHhhccCCCEEEEe
Confidence 44455555554444443
No 145
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=50.96 E-value=29 Score=24.65 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCcEEEEEeecCcc---hhhHHHHHhC-CCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCc
Q psy18065 65 LNAAFKDVIRFLNWTKVAIVYEEDNG---LFKLQELVKT-PPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTST 139 (149)
Q Consensus 65 ~~~ai~~ll~~~~W~~v~vi~~~~~~---~~~l~~l~~~-~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~ 139 (149)
...++-+.++..||+-+.. ..+... ...++.+... ..-.|+- +.. +.....+.++.+++.+..+|.++...
T Consensus 22 ~~~g~~~~a~~~g~~~~~~-~~~~~~~~~~~~i~~~i~~~~~vDgiI--i~~-~~~~~~~~~~~~~~~giPvV~~~~~~ 96 (350)
T 3h75_A 22 YSQFMQAAARDLGLDLRIL-YAERDPQNTLQQARELFQGRDKPDYLM--LVN-EQYVAPQILRLSQGSGIKLFIVNSPL 96 (350)
T ss_dssp HHHHHHHHHHHHTCEEEEE-ECTTCHHHHHHHHHHHHHSSSCCSEEE--EEC-CSSHHHHHHHHHTTSCCEEEEEESCC
T ss_pred HHHHHHHHHHHcCCeEEEE-ECCCCHHHHHHHHHHHHhcCCCCCEEE--EeC-chhhHHHHHHHHHhCCCcEEEEcCCC
Confidence 4556666667778864333 322211 2334444443 1122221 111 12345667788888887777776654
No 146
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=49.88 E-value=48 Score=22.63 Aligned_cols=18 Identities=6% Similarity=0.036 Sum_probs=9.3
Q ss_pred HHHHHHHhCCCceEEEec
Q psy18065 120 NVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 120 ~~l~~i~~~~~~~iil~~ 137 (149)
+.++.+++.+.-+|+++.
T Consensus 80 ~~~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 80 PRVRFMTERNMPFVTHGR 97 (288)
T ss_dssp HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHhhCCCCEEEECC
Confidence 445555555554555443
No 147
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=48.50 E-value=47 Score=22.57 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=12.0
Q ss_pred hHHHHHHHHhCCCceEEEec
Q psy18065 118 YRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 118 ~~~~l~~i~~~~~~~iil~~ 137 (149)
..+.++++++.+.-+|+++.
T Consensus 88 ~~~~~~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 88 NIGYYLNLEKNGIPFAMINA 107 (298)
T ss_dssp THHHHHHHHHTTCCEEEESS
T ss_pred cHHHHHHHHhcCCCEEEEec
Confidence 34566666666665665554
No 148
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=48.35 E-value=40 Score=19.80 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=21.7
Q ss_pred ccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065 53 EFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87 (149)
Q Consensus 53 ~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~ 87 (149)
.|-+|+.-++..+-..+-++++.|+-+-+.++.++
T Consensus 26 gfkvrtvrspqelkdsieelvkkynativvvvvdd 60 (134)
T 2l69_A 26 GFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDD 60 (134)
T ss_dssp TCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSS
T ss_pred CceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEcc
Confidence 45566666666666666666666666666655555
No 149
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=47.79 E-value=26 Score=24.53 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=14.8
Q ss_pred chHHHHHHHHhCCCceEEEecC
Q psy18065 117 TYRNVLREIRQKEIFNLIIDTS 138 (149)
Q Consensus 117 d~~~~l~~i~~~~~~~iil~~~ 138 (149)
...+.++.+++.+.-+|.++..
T Consensus 72 ~~~~~~~~~~~~giPvV~~~~~ 93 (330)
T 3uug_A 72 TLSDVLKQAGEQGIKVIAYDRL 93 (330)
T ss_dssp GGHHHHHHHHHTTCEEEEESSC
T ss_pred hHHHHHHHHHHCCCCEEEECCC
Confidence 4567777787777666666553
No 150
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=47.19 E-value=15 Score=24.21 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=25.1
Q ss_pred EEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 15 QALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 15 ~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
.++.||.++.=+.....++..++.|+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 67899999888878788889999999986
No 151
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=46.54 E-value=19 Score=22.98 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=26.6
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
.++++.|+.++.=+.....++..+++|++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 36889999998888777788888999998854
No 152
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=46.47 E-value=17 Score=23.33 Aligned_cols=34 Identities=6% Similarity=0.116 Sum_probs=21.7
Q ss_pred CCchHHHHHHHHhC-CCceEEEecCchhHHHHHhh
Q psy18065 115 PSTYRNVLREIRQK-EIFNLIIDTSTTHISQFFRA 148 (149)
Q Consensus 115 ~~d~~~~l~~i~~~-~~~~iil~~~~~~~~~il~q 148 (149)
.+||.+++.+++++ +.+++++.........+.++
T Consensus 118 D~DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ 152 (165)
T 2qip_A 118 DGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDC 152 (165)
T ss_dssp CGGGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHH
T ss_pred ChhHHHHHHHHHHHcCcEEEEEeCCCcChHHHHHh
Confidence 47999999999996 86665554332233444433
No 153
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=46.00 E-value=19 Score=22.58 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=26.8
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
++.++.|+.++.=+.....++..+++|++...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47899999998888777778888999998853
No 154
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=45.28 E-value=14 Score=23.67 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=26.5
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
.++++.|+.+|.=+.....++..++.|+++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 35 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAG 35 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence 36889999998888777888888999998754
No 155
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=44.97 E-value=34 Score=23.57 Aligned_cols=18 Identities=6% Similarity=0.150 Sum_probs=10.7
Q ss_pred HHHHHHHhCCCceEEEec
Q psy18065 120 NVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 120 ~~l~~i~~~~~~~iil~~ 137 (149)
+.++.+++.+.-+|+++.
T Consensus 82 ~~~~~l~~~~iPvV~i~~ 99 (295)
T 3hcw_A 82 PIKQMLIDESMPFIVIGK 99 (295)
T ss_dssp HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHhCCCCEEEECC
Confidence 455666666655565554
No 156
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=44.90 E-value=18 Score=23.49 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=26.5
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
+.+|.|+.++.=+.....++..+++|++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 7899999998888887888888999998854
No 157
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=44.39 E-value=16 Score=24.00 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=25.0
Q ss_pred EEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 15 QALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 15 ~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
.++.||.++.=+.....++..++.|+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 67899999888877788889999999976
No 158
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=44.29 E-value=61 Score=21.97 Aligned_cols=16 Identities=6% Similarity=-0.286 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhcCCc
Q psy18065 64 LLNAAFKDVIRFLNWT 79 (149)
Q Consensus 64 ~~~~ai~~ll~~~~W~ 79 (149)
....++-+.++..||+
T Consensus 38 ~~~~gi~~~~~~~g~~ 53 (296)
T 3brq_A 38 ELLFHAARMAEEKGRQ 53 (296)
T ss_dssp HHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHCCCE
Confidence 3455566666667775
No 159
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=44.16 E-value=21 Score=23.49 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
.+.++.|+.++.-+.....++..+++|++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 47899999998888887888888999998854
No 160
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=43.39 E-value=23 Score=26.07 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCcEEEEEeecCc-chhhHHHHHhCCCCCCceEEE-EecCC----CchHHHHHHHHhCCCceEEEec
Q psy18065 68 AFKDVIRFLNWTKVAIVYEEDN-GLFKLQELVKTPPTLKTEMYI-RHANP----STYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 68 ai~~ll~~~~W~~v~vi~~~~~-~~~~l~~l~~~~~~~~~~v~~-~~~~~----~d~~~~l~~i~~~~~~~iil~~ 137 (149)
.+.++++.+|.+++.++++..- .....+.+.+.++..|+.+.. ..+.+ +...+..+.+++.+++.||-.+
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 96 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIG 96 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeC
Confidence 3556677778899999987532 112344454444445665543 33322 3567778888888889888765
No 161
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=42.83 E-value=22 Score=23.13 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=28.0
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
...+++||+++.=+.....++..++.|++...
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 48999999999988888889999999998754
No 162
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=42.76 E-value=35 Score=23.45 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCcEEEEEeecCcc---hhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEec
Q psy18065 65 LNAAFKDVIRFLNWTKVAIVYEEDNG---LFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 65 ~~~ai~~ll~~~~W~~v~vi~~~~~~---~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~ 137 (149)
...++-+.++..||+-+ +++.... ...++.+... +-.|+ .+...+.....+.++.+++.+.-+|.++.
T Consensus 20 ~~~gi~~~a~~~g~~~~--~~~~~~~~~~~~~i~~l~~~-~vdgi--ii~~~~~~~~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 20 EWKFADKAGKDLGFEVI--KIAVPDGEKTLNAIDSLAAS-GAKGF--VICTPDPKLGSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHHTEEEE--EEECCSHHHHHHHHHHHHHT-TCCEE--EEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHcCCEEE--EeCCCCHHHHHHHHHHHHHc-CCCEE--EEeCCCchhhHHHHHHHHHCCCcEEEeCC
Confidence 45556666666776543 2222211 2233333332 11222 12122223456667788888776666664
No 163
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=42.44 E-value=65 Score=23.45 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCcEEEEEeecCc-chhhHHHHHhC---CCCCCceEEEEecCC-CchHHHHH
Q psy18065 66 NAAFKDVIRFLNWTKVAIVYEEDN-GLFKLQELVKT---PPTLKTEMYIRHANP-STYRNVLR 123 (149)
Q Consensus 66 ~~ai~~ll~~~~W~~v~vi~~~~~-~~~~l~~l~~~---~~~~~~~v~~~~~~~-~d~~~~l~ 123 (149)
....+.++..+. ++|.+.+|+|. |......+.+. +...|..+.+..++. .|..+.+.
T Consensus 195 t~~~~~~L~r~~-~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~lP~gkDpdd~l~ 256 (338)
T 1dd9_A 195 TADHIQLLFRAT-NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 256 (338)
T ss_dssp CHHHHHHHHHHC-SEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEECTTCCHHHHHH
T ss_pred CHHHHHHHHhcC-CeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCChHHHHH
Confidence 344556665443 78999999874 65555555443 344566665545543 45555553
No 164
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=42.19 E-value=15 Score=26.75 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCcEEEEEeecCc-chhhHHHHHhCCCCCCceEEEEecCC-CchHHHHH
Q psy18065 65 LNAAFKDVIRFLNWTKVAIVYEEDN-GLFKLQELVKTPPTLKTEMYIRHANP-STYRNVLR 123 (149)
Q Consensus 65 ~~~ai~~ll~~~~W~~v~vi~~~~~-~~~~l~~l~~~~~~~~~~v~~~~~~~-~d~~~~l~ 123 (149)
+....+.+++.+ .++|.+.+|+|. |........+.+...|..+.+..++. .|..+.+.
T Consensus 183 lt~~~~~~L~r~-~~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~~lP~gkDpdd~l~ 242 (329)
T 4edg_A 183 LSDEHITFIRKL-TSNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQLPSGMDPDEYIG 242 (329)
T ss_dssp CCHHHHHHHHHH-CSEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCTTCCHHHHHH
T ss_pred CCHHHHHHHHhc-CCeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHH
Confidence 334456666554 468888888874 55555544444444566665545543 45555543
No 165
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=42.02 E-value=37 Score=25.31 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCcEEEEEeecCc-chhhHHHHHhCCCCCCceEEEEecCC-CchHHHHH
Q psy18065 65 LNAAFKDVIRFLNWTKVAIVYEEDN-GLFKLQELVKTPPTLKTEMYIRHANP-STYRNVLR 123 (149)
Q Consensus 65 ~~~ai~~ll~~~~W~~v~vi~~~~~-~~~~l~~l~~~~~~~~~~v~~~~~~~-~d~~~~l~ 123 (149)
+....+.+++.+. ++|.+.+|+|. |......+.+.+...|..+.+..++. .|..+.+.
T Consensus 275 lt~~~~~~L~r~~-~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~~lP~gkDpdd~l~ 334 (407)
T 2au3_A 275 LTQNQANLLSKFT-KKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPVYLPEGYDPDEFIK 334 (407)
T ss_dssp CCHHHHHHHHTTC-SEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECCCTTCCHHHHHH
T ss_pred CCHHHHHHHHhcC-CeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEECCCCCChHHHHH
Confidence 3444566776554 78888888874 55555555544444566665545543 46655554
No 166
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=41.81 E-value=22 Score=22.17 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=26.1
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
++++.||.++.=+.....++..++.|++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 6789999998888888888888899988743
No 167
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=41.68 E-value=33 Score=20.11 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=31.0
Q ss_pred ChHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCC
Q psy18065 1 MAEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVP 39 (149)
Q Consensus 1 ~~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP 39 (149)
|+.+...+.+..+.+.+++......+..+..+....+++
T Consensus 7 ~~~~~~~~~i~~~~vv~f~~~~Cp~C~~~~~~L~~~~~~ 45 (114)
T 2hze_A 7 MAEEFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFK 45 (114)
T ss_dssp CHHHHHHTTCCTTCEEEEECTTCHHHHHHHHHHTTSCBC
T ss_pred HHHHHHHHHhccCCEEEEEeCCChhHHHHHHHHHHcCCC
Confidence 566777888877777888877777888888888888776
No 168
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=41.63 E-value=53 Score=23.15 Aligned_cols=12 Identities=8% Similarity=-0.125 Sum_probs=5.6
Q ss_pred HHHHHHHHhcCC
Q psy18065 67 AAFKDVIRFLNW 78 (149)
Q Consensus 67 ~ai~~ll~~~~W 78 (149)
.++-+..+.+|+
T Consensus 27 ~Gi~~~~~~~g~ 38 (318)
T 2fqx_A 27 EGISRFAQENNA 38 (318)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC
Confidence 344444455554
No 169
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=41.25 E-value=22 Score=22.51 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=26.6
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
..+|.|+.++.=+.....++..+++|++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 6889999998888888888999999998754
No 170
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=41.05 E-value=1e+02 Score=22.48 Aligned_cols=51 Identities=16% Similarity=0.083 Sum_probs=25.2
Q ss_pred CCcEEEEEeecCcc--hhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHh
Q psy18065 77 NWTKVAIVYEEDNG--LFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQ 127 (149)
Q Consensus 77 ~W~~v~vi~~~~~~--~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~ 127 (149)
.++++.++|....| ....+.+.+.+...|..+....+...+..++...+.+
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~ 307 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYD 307 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHT
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHh
Confidence 36789999877544 2334444444433454444433322233334444443
No 171
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=40.99 E-value=34 Score=18.70 Aligned_cols=31 Identities=16% Similarity=0.407 Sum_probs=23.7
Q ss_pred EEEecCChhHHHHHHHHHHHhcCCcEEE-EEeecC
Q psy18065 55 SVNLYPSQKLLNAAFKDVIRFLNWTKVA-IVYEED 88 (149)
Q Consensus 55 ~~~~~p~~~~~~~ai~~ll~~~~W~~v~-vi~~~~ 88 (149)
.+++.|. .+.+++.++.+.+|..+. .|..||
T Consensus 17 VikT~pG---~A~~va~~iD~~~~~eI~GTIAGDD 48 (71)
T 1b4b_A 17 VLRTLPG---NAHAIGVLLDNLDWDEIVGTICGDD 48 (71)
T ss_dssp EEEESTT---CHHHHHHHHHHHCCTTEEEEEECSS
T ss_pred EEEeCCC---cHHHHHHHHHhCCCCCeEEEEeeCC
Confidence 7899998 567899999999999854 344444
No 172
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=40.74 E-value=21 Score=24.46 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=27.3
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
.+++|+||.++.=+....-++..++++++..+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g 59 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSG 59 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCC
Confidence 48999999999988888888888898887754
No 173
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=40.58 E-value=44 Score=23.50 Aligned_cols=60 Identities=7% Similarity=-0.005 Sum_probs=29.3
Q ss_pred CcEEEEEeec--C---cchhhHHHHHhCCCCCCceEEEEecCC--CchHHHHHHHHhCCCceEEEec
Q psy18065 78 WTKVAIVYEE--D---NGLFKLQELVKTPPTLKTEMYIRHANP--STYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 78 W~~v~vi~~~--~---~~~~~l~~l~~~~~~~~~~v~~~~~~~--~d~~~~l~~i~~~~~~~iil~~ 137 (149)
=+.|+++..+ - +....++.+.+.+++.|+.+.+..... ....+.++.+...+.+.||+..
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 127 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYP 127 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeC
Confidence 3556666554 1 122334444444555566554433221 1233455666666666666654
No 174
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=40.52 E-value=9.8 Score=24.93 Aligned_cols=80 Identities=8% Similarity=-0.047 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCC-CceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHH
Q psy18065 66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTL-KTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQ 144 (149)
Q Consensus 66 ~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~-~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~ 144 (149)
+.......++++-+++.++-|.-..-...+.+++.+.-. |+.+.+..+ ++..+.+++-+ .+.+.++++-++.++..
T Consensus 20 GQVat~W~k~~~~~~IiVvnD~vA~D~~~k~~lkmA~P~~gvk~~i~sv--e~ai~~~~~~~-~~~~v~il~k~p~d~~~ 96 (168)
T 3eye_A 20 GQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITAETYGFGIRFFTI--EKTINVIGKAA-PHQKIFLICRTPQTVRK 96 (168)
T ss_dssp THHHHHHHHHHTCSEEEEECHHHHHSGGGGHHHHHHHHHHTCEEEEECH--HHHHHHGGGCC-TTCCEEEEESSHHHHHH
T ss_pred hhhhheeccccCCCEEEEEcccccCCHHHHHHHHhcCCCCCCeEEEEEH--HHHHHHHhccc-CCceEEEEECCHHHHHH
Confidence 556667889999999988866422223334444444334 666655332 33334443332 45667788888888888
Q ss_pred HHhh
Q psy18065 145 FFRA 148 (149)
Q Consensus 145 il~q 148 (149)
+++.
T Consensus 97 lve~ 100 (168)
T 3eye_A 97 LVEG 100 (168)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7653
No 175
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=40.09 E-value=69 Score=21.89 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=13.7
Q ss_pred hHHHHHHHHhCCCceEEEecC
Q psy18065 118 YRNVLREIRQKEIFNLIIDTS 138 (149)
Q Consensus 118 ~~~~l~~i~~~~~~~iil~~~ 138 (149)
..+.++.+++.+.-+|.++..
T Consensus 73 ~~~~~~~~~~~~iPvV~~~~~ 93 (309)
T 2fvy_A 73 AGTVIEKARGQNVPVVFFNKE 93 (309)
T ss_dssp HHHHHHHHHTTTCCEEEESSC
T ss_pred hHHHHHHHHHCCCcEEEecCC
Confidence 456677777777666666554
No 176
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=40.08 E-value=50 Score=23.31 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=17.6
Q ss_pred HHhcCCcEEEEEeec-CcchhhHHHHHhCCCCCCceEEE
Q psy18065 73 IRFLNWTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYI 110 (149)
Q Consensus 73 l~~~~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~ 110 (149)
.+.||.+.+++...+ +.+-..+.++.+..++.++...+
T Consensus 204 ~~~yGl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If 242 (291)
T 1pq4_A 204 ARDYNLVQIPIEVEGQEPSAQELKQLIDTAKENNLTMVF 242 (291)
T ss_dssp HHHTTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHCCCEEeecccCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 344555554443222 23444555555555555554433
No 177
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=40.08 E-value=41 Score=23.00 Aligned_cols=18 Identities=6% Similarity=0.041 Sum_probs=10.2
Q ss_pred HHHHHHHhCCCceEEEec
Q psy18065 120 NVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 120 ~~l~~i~~~~~~~iil~~ 137 (149)
+.++.+++.+.-+|+++.
T Consensus 91 ~~~~~~~~~~iPvV~~~~ 108 (293)
T 2iks_A 91 PFYQRWANDPFPIVALDR 108 (293)
T ss_dssp HHHHTTTTSSSCEEEEES
T ss_pred HHHHHHHhCCCCEEEECC
Confidence 355666666655555554
No 178
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=39.88 E-value=22 Score=24.05 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=27.3
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
.+.+|+||.++.=+.....++..++++.++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G 59 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSG 59 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 48999999999998888889988888877654
No 179
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=39.86 E-value=96 Score=21.80 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=8.0
Q ss_pred HHHHHHHhCCCceEEEe
Q psy18065 120 NVLREIRQKEIFNLIID 136 (149)
Q Consensus 120 ~~l~~i~~~~~~~iil~ 136 (149)
+.++.+...+.+.||+.
T Consensus 115 ~~i~~l~~~~vdGiIi~ 131 (344)
T 3kjx_A 115 KVLYEMLSWRPSGVIIA 131 (344)
T ss_dssp HHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHhCCCCEEEEE
Confidence 33444444455555554
No 180
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=39.82 E-value=24 Score=22.58 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 12 NGVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 12 ~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
..+.++.|+.++.=+.....++..++.|+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 348899999998888888888888999998754
No 181
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=39.80 E-value=34 Score=23.65 Aligned_cols=17 Identities=0% Similarity=-0.205 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhcCCcEE
Q psy18065 65 LNAAFKDVIRFLNWTKV 81 (149)
Q Consensus 65 ~~~ai~~ll~~~~W~~v 81 (149)
+..++-+.++..||+-+
T Consensus 33 ~~~gi~~~a~~~g~~~~ 49 (303)
T 3kke_A 33 MFSGVQMAASGHSTDVL 49 (303)
T ss_dssp HHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHCCCEEE
Confidence 44445555555565543
No 182
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=39.59 E-value=29 Score=21.76 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=25.9
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
.+.+++||.++.=+....-+++.++.|++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 4799999999888878788888888888764
No 183
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=39.41 E-value=80 Score=21.29 Aligned_cols=63 Identities=10% Similarity=-0.034 Sum_probs=37.5
Q ss_pred HHHHHhcCCc--------------EEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEE
Q psy18065 70 KDVIRFLNWT--------------KVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLII 135 (149)
Q Consensus 70 ~~ll~~~~W~--------------~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil 135 (149)
-++|..-||+ .+.+++.+.......+.+.+.+++.|+.+.++.+ +....+..+++...+.++.
T Consensus 106 k~LL~eaG~~~~~~g~~~~~G~~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~---~~~~~~~~~~~~~~d~~~~ 182 (259)
T 3pam_A 106 WKLLQEAGFTKKNNRLIAPNGLPFQFEIMTQSLEEEKVALAFQSNLSRLGIHAEIRTV---DDSQYQNRLGMFNYDMIIG 182 (259)
T ss_dssp HHHHHHTTCEEETTEEECTTSCBCEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEC---CHHHHHHHHHHTCCSEEEE
T ss_pred HHHHHHcCCccCCCcEECCCCcEEEEEEEeCCchHHHHHHHHHHHHHHcCCEEEEEec---CHHHHHHHHhcCCeeEEEe
Confidence 4577778886 3445554322334455566666677998887665 3445555666666565554
No 184
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=39.06 E-value=29 Score=22.04 Aligned_cols=32 Identities=13% Similarity=-0.088 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
....++||+++.=+.....++..++.|++...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46889999998888888888899999999853
No 185
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=39.06 E-value=66 Score=21.91 Aligned_cols=72 Identities=8% Similarity=0.045 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCC---CchHHHHHHHHhC--CCceEEE
Q psy18065 63 KLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP---STYRNVLREIRQK--EIFNLII 135 (149)
Q Consensus 63 ~~~~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~---~d~~~~l~~i~~~--~~~~iil 135 (149)
.-.+.+++..+-.-||+ |.+++..+.....++++.+.....+..+.....+. ++...+++++.+. ..+.+|-
T Consensus 21 ~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvn 97 (262)
T 3ksu_A 21 KNLGALTAKTFALESVN-LVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAIN 97 (262)
T ss_dssp SHHHHHHHHHHTTSSCE-EEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred chHHHHHHHHHHHCCCE-EEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 34888898888777885 44444433334445554444333354555545543 3456667766554 3444443
No 186
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Probab=38.90 E-value=48 Score=25.49 Aligned_cols=76 Identities=8% Similarity=0.068 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCC---chHHHHHHHHhCCCceEEEec
Q psy18065 62 QKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPS---TYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 62 ~~~~~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~---d~~~~l~~i~~~~~~~iil~~ 137 (149)
..-++.+++..+-..|++.+.++..++......+++.+.+...|..+.+...+.. +...++.++.+.+.-.+|+++
T Consensus 248 sgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g~ld~vVh~ 326 (496)
T 3mje_A 248 TGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDAPLTAVFHS 326 (496)
T ss_dssp SSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTSCEEEEEEC
T ss_pred CCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 3458888888777779988888776432222233333333334555655555533 455666666554333445544
No 187
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=38.86 E-value=24 Score=25.73 Aligned_cols=27 Identities=7% Similarity=0.171 Sum_probs=25.1
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCC
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVP 39 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP 39 (149)
.++.|+|+.+|+.+..+..+|...+.|
T Consensus 227 D~miVVGg~nSSNT~rL~eia~~~g~~ 253 (328)
T 3szu_A 227 EVVLVVGSKNSSNSNRLAELAQRMGKR 253 (328)
T ss_dssp SEEEEECCTTCHHHHHHHHHHHHTTCE
T ss_pred CEEEEeCCCCCchHHHHHHHHHHhCCC
Confidence 588999999999999999999999987
No 188
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=38.54 E-value=61 Score=22.24 Aligned_cols=59 Identities=7% Similarity=0.019 Sum_probs=28.3
Q ss_pred cEEEEEeec-C--cch-hhHHHHHhCCCCCCceEEEEecCC--CchHHHHHHHHhCCCceEEEec
Q psy18065 79 TKVAIVYEE-D--NGL-FKLQELVKTPPTLKTEMYIRHANP--STYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 79 ~~v~vi~~~-~--~~~-~~l~~l~~~~~~~~~~v~~~~~~~--~d~~~~l~~i~~~~~~~iil~~ 137 (149)
+.|+++..+ + +.. ..++.+.+.+++.|+.+.+..... ....+.+..+...+.+.||+..
T Consensus 14 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~ 78 (301)
T 3miz_A 14 NTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVT 78 (301)
T ss_dssp CEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 456665543 1 222 344445555555565554433221 1234455555566666666543
No 189
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=38.47 E-value=22 Score=22.01 Aligned_cols=31 Identities=6% Similarity=-0.032 Sum_probs=25.1
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
.+.++.||.++.=+.....+ ..++.|+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~ 32 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMS 32 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHh
Confidence 36889999998887776777 88899998864
No 190
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=37.97 E-value=25 Score=22.82 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=26.6
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
+.++.|+.++.=+.....++..++.|+++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 6889999998888787888889999999854
No 191
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=37.70 E-value=55 Score=22.22 Aligned_cols=60 Identities=8% Similarity=0.114 Sum_probs=30.4
Q ss_pred CcEEEEEeec-C--cchhhHHHHHhCCCCCCce-EEEEecCC--CchHHHHHHHHhCCCceEEEec
Q psy18065 78 WTKVAIVYEE-D--NGLFKLQELVKTPPTLKTE-MYIRHANP--STYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 78 W~~v~vi~~~-~--~~~~~l~~l~~~~~~~~~~-v~~~~~~~--~d~~~~l~~i~~~~~~~iil~~ 137 (149)
-+.|+++..+ + +....++.+.+.+++.|+. +.+..... ....+.++.+...+.+.||+..
T Consensus 10 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 10 SKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 3456666654 2 1223344455555555666 54433221 1234456666666677766654
No 192
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=37.23 E-value=42 Score=24.47 Aligned_cols=69 Identities=10% Similarity=0.081 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecC--C--CchHHHHHHHHhCCCceEEEecC
Q psy18065 68 AFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN--P--STYRNVLREIRQKEIFNLIIDTS 138 (149)
Q Consensus 68 ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~--~--~d~~~~l~~i~~~~~~~iil~~~ 138 (149)
.+.+.++.+|.+++.++++... ....+.+.+.+++.++.+ +..+. + +...+.++.+++.+++.||-.+-
T Consensus 24 ~l~~~l~~~g~~r~liVtd~~~-~~~~~~v~~~L~~~~~~v-~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 96 (353)
T 3hl0_A 24 DVAEEIRRLGLSRALVLSTPQQ-KGDAEALASRLGRLAAGV-FSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGG 96 (353)
T ss_dssp GHHHHHHHTTCCCEEEECCGGG-HHHHHHHHHHHGGGEEEE-ECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHhCCCEEEEEecCch-hhHHHHHHHHHhhCCcEE-ecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCC
Confidence 4567788899999999987632 112344444443333322 22232 2 34567778888889998887764
No 193
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=36.82 E-value=21 Score=24.52 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=27.6
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
.+.+|.||+++.=+.....++..++++++..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g 41 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTG 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCC
Confidence 47999999999888888888999999988754
No 194
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=36.74 E-value=21 Score=24.07 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=26.9
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
.+.+++|+.++.=+.....+++.+++|++..+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 37899999998888887888888999998854
No 195
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=36.49 E-value=1.1e+02 Score=21.45 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=30.4
Q ss_pred cEEEEEeec-C--cchhhHHHHHhCCCCCCceEEEEecCC--CchHHHHHHHHhCCCceEEEec
Q psy18065 79 TKVAIVYEE-D--NGLFKLQELVKTPPTLKTEMYIRHANP--STYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 79 ~~v~vi~~~-~--~~~~~l~~l~~~~~~~~~~v~~~~~~~--~d~~~~l~~i~~~~~~~iil~~ 137 (149)
+.|+++..+ + +....++.+.+.+.+.|+.+.+...+. ....+.+..+...+.+.||+..
T Consensus 63 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~ 126 (339)
T 3h5o_A 63 RTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITG 126 (339)
T ss_dssp CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeC
Confidence 456666653 2 233444455555555666654433221 2234555666666667766654
No 196
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=36.35 E-value=37 Score=22.05 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=23.1
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
+++++||.++.=|.....+++ ++.|++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 689999999887766666666 89998874
No 197
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=36.01 E-value=32 Score=22.01 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 12 NGVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 12 ~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
..++++.|+.++.=+.....++..++.++++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 358999999998888888888888899998753
No 198
>2zfz_A Arginine repressor; DNA binding protein, core, oligomeriza domain, alpha/beta topology, structural genomics; HET: ARG; 1.85A {Mycobacterium tuberculosis} PDB: 3bue_A 3cag_A*
Probab=35.98 E-value=39 Score=18.86 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=23.4
Q ss_pred EEEecCChhHHHHHHHHHHHhcCCcEEE-EEeecC
Q psy18065 55 SVNLYPSQKLLNAAFKDVIRFLNWTKVA-IVYEED 88 (149)
Q Consensus 55 ~~~~~p~~~~~~~ai~~ll~~~~W~~v~-vi~~~~ 88 (149)
.+++.|. .+.+++.++.+.+|..|. .|..||
T Consensus 25 VikT~PG---~A~~vA~~iD~~~~~eIlGTIAGDD 56 (79)
T 2zfz_A 25 VLRTPPG---AAHYLASAIDRAALPQVVGTIAGDD 56 (79)
T ss_dssp EEECSTT---CHHHHHHHHHHHCCTTEEEEEECSS
T ss_pred EEEeCCC---cHHHHHHHHHhCCCCCeEEEEecCC
Confidence 7889998 567899999999999854 344334
No 199
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=35.35 E-value=32 Score=21.49 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=26.3
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
.+.++.|+.++.=+.....++..++.|++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 36889999998888787888888899988743
No 200
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=35.32 E-value=1.3e+02 Score=21.91 Aligned_cols=131 Identities=8% Similarity=0.074 Sum_probs=67.3
Q ss_pred HHHHHhhCCcEEEEcCCCCCcHHHHHHhhccc-CCCceeeccCCC-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEE
Q psy18065 5 TMCRQLQNGVQALFGPSDALLGPHVQSICEAL-DVPHMESRLDLE-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVA 82 (149)
Q Consensus 5 ~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~-~iP~is~~~~~~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~ 82 (149)
.+-++.++|+..||+.. ......+..++..+ ++|++-...... .+-..+.++..-. ..++-.++.++. +=++|+
T Consensus 78 ~l~~l~~~g~d~Ii~~g-~~~~~~~~~vA~~~Pdv~fv~id~~~~~~Nv~sv~~~~~eg-~ylaG~~A~~~t--k~~kIG 153 (356)
T 3s99_A 78 SIKRIARAGNKLIFTTS-FGYMDPTVKVAKKFPDVKFEHATGYKTADNMSAYNARFYEG-RYVQGVIAAKMS--KKGIAG 153 (356)
T ss_dssp HHHHHHHTTCSEEEECS-GGGHHHHHHHHTTCTTSEEEEESCCCCBTTEEEEEECHHHH-HHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHCCCCEEEECC-HHHHHHHHHHHHHCCCCEEEEEeccccCCcEEEEEechhHH-HHHHHHHHHHhc--CCCEEE
Confidence 34456678899999864 33455677777766 678776542211 1222334443321 122223334442 237999
Q ss_pred EEeecC--cchhhHHHHHhCCCCC--CceEEEEecCC-Cc---hHHHHHHHHhCCCceEEEecCc
Q psy18065 83 IVYEED--NGLFKLQELVKTPPTL--KTEMYIRHANP-ST---YRNVLREIRQKEIFNLIIDTST 139 (149)
Q Consensus 83 vi~~~~--~~~~~l~~l~~~~~~~--~~~v~~~~~~~-~d---~~~~l~~i~~~~~~~iil~~~~ 139 (149)
+|...+ ....+...+..-++.. .+.+....... .| -.++.+.+-+.++++|.-..+.
T Consensus 154 fVgg~~~p~v~~~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~ 218 (356)
T 3s99_A 154 YIGSVPVPEVVQGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDS 218 (356)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred EECCCccHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCc
Confidence 997643 2223344444433332 34443332221 22 3566777777888766554443
No 201
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=34.81 E-value=54 Score=21.84 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=28.5
Q ss_pred CchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065 116 STYRNVLREIRQKEIFNLIIDTSTTHISQFFRA 148 (149)
Q Consensus 116 ~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q 148 (149)
.|..+++..+++.+.+.|.+.+...-+..++++
T Consensus 129 ~dl~~~l~~L~~~g~~~ilveGG~~l~~s~l~~ 161 (219)
T 2azn_A 129 VDLKKLMDILYDKGIKSILLEGGGTLNWGMFKE 161 (219)
T ss_dssp CCHHHHHHHHHHTTCCEEEEEECHHHHHHHHHT
T ss_pred cCHHHHHHHHHHcCCCEEEEeeCHHHHHHHHHC
Confidence 478999999999999999999988888888764
No 202
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=34.77 E-value=1.1e+02 Score=21.15 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=41.6
Q ss_pred EEEEEeecCcchhhHHHHHhCCCCCCceEEEEe---cC--CC---c----hHHHHHHHHhCCCceEEEecCchh--HHHH
Q psy18065 80 KVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH---AN--PS---T----YRNVLREIRQKEIFNLIIDTSTTH--ISQF 145 (149)
Q Consensus 80 ~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~---~~--~~---d----~~~~l~~i~~~~~~~iil~~~~~~--~~~i 145 (149)
.++++-++-.|+..+.++.+..-...+ +.+-. ++ .. + ..+..+.+.+.+++.|++-|+... +..-
T Consensus 5 ~IgvfDSGvGGltv~~~i~~~lP~~~~-iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~ 83 (267)
T 2gzm_A 5 AIGVIDSGVGGLTVAKELIRQLPKERI-IYLGDTARCPYGPRSREEVRQFTWEMTEHLLDLNIKMLVIACNTATAVVLEE 83 (267)
T ss_dssp CEEEEESSSTTHHHHHHHHHHCTTSCE-EEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHH
T ss_pred cEEEEeCCccHHHHHHHHHHHCCCCCE-EEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHH
Confidence 467766666688888888887544332 33321 22 11 1 234456677889999999998865 3444
Q ss_pred Hh
Q psy18065 146 FR 147 (149)
Q Consensus 146 l~ 147 (149)
++
T Consensus 84 lr 85 (267)
T 2gzm_A 84 MQ 85 (267)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 203
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=34.73 E-value=32 Score=23.57 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=25.8
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
+.+|.||+++.=+.....++...+.++++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence 678999999888888888888999998875
No 204
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=34.47 E-value=30 Score=22.74 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=25.7
Q ss_pred EEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 15 QALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 15 ~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
.++.|+.++.=+.....++..+++|+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d 32 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQISTG 32 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence 678899998888888888888999999873
No 205
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=34.38 E-value=20 Score=22.81 Aligned_cols=32 Identities=13% Similarity=-0.027 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccC-----CCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALD-----VPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~-----iP~is~~ 44 (149)
.+.++.|+.++.=+.....++..++ +|+++.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 4789999999888777777877777 8888754
No 206
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=34.08 E-value=25 Score=22.31 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=26.2
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
..++.|+.++.=+.....++..++.|+++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~d 36 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLSTG 36 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 6889999998888888888888899988754
No 207
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=33.74 E-value=35 Score=22.09 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=26.4
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
.+++.|+.++.=+.....++..++.|+++..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 6889999998888888888888999998863
No 208
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=33.67 E-value=24 Score=25.34 Aligned_cols=28 Identities=14% Similarity=0.142 Sum_probs=25.6
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCc
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPH 40 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~ 40 (149)
.++.|+|+.+|+.+..+..+|...+.|-
T Consensus 211 D~miVVGg~nSSNT~rL~eia~~~~~~t 238 (297)
T 3dnf_A 211 DVMIIIGGKNSGNTRRLYYISKELNPNT 238 (297)
T ss_dssp SEEEEESCTTCHHHHHHHHHHHHHCSSE
T ss_pred CEEEEECCCCCchhHHHHHHHHhcCCCE
Confidence 5889999999999999999999998873
No 209
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=33.64 E-value=37 Score=19.16 Aligned_cols=31 Identities=16% Similarity=0.416 Sum_probs=23.7
Q ss_pred EEEecCChhHHHHHHHHHHHhcCCcEEE-EEeecC
Q psy18065 55 SVNLYPSQKLLNAAFKDVIRFLNWTKVA-IVYEED 88 (149)
Q Consensus 55 ~~~~~p~~~~~~~ai~~ll~~~~W~~v~-vi~~~~ 88 (149)
.+++.|. .+.+++.++.+.+|..|. .|..||
T Consensus 29 VikT~PG---~A~~vA~~iD~~~~~eIlGTIAGDD 60 (83)
T 2p5m_A 29 VLKTMPG---NAQAIGALMDNLDWDEMMGTICGDD 60 (83)
T ss_dssp EEEESTT---CHHHHHHHHHTTTCTTCCEEEECSS
T ss_pred EEEeCCC---cHHHHHHHHHhCCCCCeEEEEecCC
Confidence 7899998 567899999999998854 454444
No 210
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=33.59 E-value=24 Score=25.65 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 12 NGVQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 12 ~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
..+++|.||+.+.=+.....++..++.+.|+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~ 34 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISG 34 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEEC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeec
Confidence 34789999999888888888888888777664
No 211
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=33.39 E-value=45 Score=21.78 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=29.4
Q ss_pred EEEEEeecCcchhhHHHHHhCCCCCCceEEEEecC----CCchHHHHHHHHhCCCceEEEec
Q psy18065 80 KVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN----PSTYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 80 ~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~----~~d~~~~l~~i~~~~~~~iil~~ 137 (149)
+|+++.-.+..+...++....++..|+...++-.. ++.+.+.+++.+..+.++||..+
T Consensus 7 ~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 68 (166)
T 3oow_A 7 QVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGA 68 (166)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred eEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 46666655444444444444444445544443221 13455555666666666766644
No 212
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=33.20 E-value=36 Score=24.90 Aligned_cols=68 Identities=7% Similarity=0.029 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCcEEEEEeecC-cchhhHHHHHhCCCCCCceEEEEecCC----CchHHHHHHHHhCCCceEEEecC
Q psy18065 68 AFKDVIRFLNWTKVAIVYEED-NGLFKLQELVKTPPTLKTEMYIRHANP----STYRNVLREIRQKEIFNLIIDTS 138 (149)
Q Consensus 68 ai~~ll~~~~W~~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~~~~~----~d~~~~l~~i~~~~~~~iil~~~ 138 (149)
.+-+.++.+|.+++.+|++.. .+ ..+.+.+.++..++. .+....+ +...+.++.+++.+++.||-.+-
T Consensus 26 ~l~~~l~~~g~~r~liVtd~~~~~--~~~~v~~~L~~~~~~-~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 98 (358)
T 3jzd_A 26 QVAAEVERLGAKRALVLCTPNQQA--EAERIADLLGPLSAG-VYAGAVMHVPIESARDATARAREAGADCAVAVGG 98 (358)
T ss_dssp GHHHHHHHTTCSCEEEECCGGGHH--HHHHHHHHHGGGEEE-EECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHHhccCCEE-EecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCC
Confidence 456778889999999998763 22 234444444333322 2222321 24566777888888888887764
No 213
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=32.19 E-value=30 Score=22.57 Aligned_cols=31 Identities=6% Similarity=0.135 Sum_probs=25.3
Q ss_pred cEEEEcCCCCCcHHHHHHhhccc-CCCceeec
Q psy18065 14 VQALFGPSDALLGPHVQSICEAL-DVPHMESR 44 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~-~iP~is~~ 44 (149)
+++|.|++++.=+.....+++.+ +++++...
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 78999999988887777788877 78877754
No 214
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=32.15 E-value=1.5e+02 Score=21.70 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCC----CchHHHHHHHHhCCCceEEEecC
Q psy18065 67 AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP----STYRNVLREIRQKEIFNLIIDTS 138 (149)
Q Consensus 67 ~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~----~d~~~~l~~i~~~~~~~iil~~~ 138 (149)
..+.+.++.+|.+++.++++... ....+.+.+.++. . ..+..+.+ +...+.++.+++.+++.||-.+-
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~-~~~~~~v~~~L~~--~-~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 97 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGERE-MSIAHKVASEIEV--A-IWHDEVVMHVPIEVAERARAVATDNEIDLLVCVGG 97 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGG-HHHHHHHTTTSCC--S-EEECCCCTTCBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCCH-HHHHHHHHHHcCC--C-EEEcceecCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44667888899999999988642 1224555555542 2 23333322 34667778888899998887764
No 215
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=32.05 E-value=27 Score=23.25 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=27.5
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
...++.|+.++.=+.....++..++.++++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 39 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSSG 39 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEech
Confidence 47899999998888888889999999999753
No 216
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=31.82 E-value=31 Score=22.84 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=26.3
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
..++.|+.++.=+.....++..+++|+++.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 578899999888888888899999999986
No 217
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=31.41 E-value=31 Score=21.89 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=25.8
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
+.++.|+.++.=+.....++..++.|+++.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 688999999888888888888889999875
No 218
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=31.13 E-value=35 Score=22.53 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=26.1
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
..++.|+.++.=+.....++..++.|+++.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 678899999888888888899999999886
No 219
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}
Probab=31.08 E-value=1.8e+02 Score=22.32 Aligned_cols=76 Identities=5% Similarity=-0.047 Sum_probs=39.5
Q ss_pred ChhHHHHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEec
Q psy18065 61 SQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 61 ~~~~~~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~ 137 (149)
...-++..++..+...|++.+.++..+......++++.+.+...|..+.+...+..|...+-.-++....+. |+++
T Consensus 267 gtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld~-VVh~ 342 (511)
T 2z5l_A 267 GMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPNA-VFHT 342 (511)
T ss_dssp TTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCSE-EEEC
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCcE-EEEC
Confidence 345688888888777788888777654322222333333333345555555555444433333333333444 4443
No 220
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=30.41 E-value=1.1e+02 Score=20.96 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=25.9
Q ss_pred EEEEEeecC--cchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhC
Q psy18065 80 KVAIVYEED--NGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQK 128 (149)
Q Consensus 80 ~v~vi~~~~--~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~ 128 (149)
++.++..|. .....+....+.++..|+.+...-+....-.++|+.|-..
T Consensus 127 ~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG~~~~~~~L~~iA~~ 177 (266)
T 4hqo_A 127 QLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQGINHQFNRLIAGC 177 (266)
T ss_dssp EEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECSSSCCHHHHHHHHTC
T ss_pred eEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecCcccCHHHHHHhhCC
Confidence 566655543 2222334444444456777665555543346667777654
No 221
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=30.27 E-value=45 Score=21.94 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=10.5
Q ss_pred chHHHHHHHHhCCCceEEEe
Q psy18065 117 TYRNVLREIRQKEIFNLIID 136 (149)
Q Consensus 117 d~~~~l~~i~~~~~~~iil~ 136 (149)
.+.+..++.+.++.++||..
T Consensus 55 ~l~~~~~~a~~~g~~ViIa~ 74 (173)
T 4grd_A 55 EMFDYAEKARERGLRAIIAG 74 (173)
T ss_dssp HHHHHHHHHTTTTCSEEEEE
T ss_pred HHHHHHHHHHhcCCeEEEEe
Confidence 34455555555555555543
No 222
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=30.23 E-value=45 Score=21.58 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=26.7
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
.++++.|+.++.=+.....++..++.+++...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 38999999998888888888888899988743
No 223
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=30.13 E-value=40 Score=21.29 Aligned_cols=33 Identities=6% Similarity=-0.101 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 12 NGVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 12 ~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
...+.+.|++++.=+.....++..++.+++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 347889999999888888888899999998764
No 224
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=30.03 E-value=48 Score=21.22 Aligned_cols=30 Identities=7% Similarity=0.026 Sum_probs=24.2
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
+++|.|+.+|.=+.....++.. ++|++...
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 7899999998887777777776 99988743
No 225
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=29.92 E-value=56 Score=21.37 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=31.7
Q ss_pred EEEEEeecCcchhhHHHHHhCCCCCCceEEEEecC----CCchHHHHHHHHhCCCceEEEec
Q psy18065 80 KVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN----PSTYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 80 ~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~----~~d~~~~l~~i~~~~~~~iil~~ 137 (149)
+|++|.-.+..+...++....+++.|+...++-.. ++.+.+..++....+.++||..+
T Consensus 8 ~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 69 (169)
T 3trh_A 8 FVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAA 69 (169)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 57777655444444454444444445554443221 23456666666777777777654
No 226
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=29.69 E-value=17 Score=15.29 Aligned_cols=11 Identities=18% Similarity=0.598 Sum_probs=5.8
Q ss_pred HHHHHHHhcCC
Q psy18065 68 AFKDVIRFLNW 78 (149)
Q Consensus 68 ai~~ll~~~~W 78 (149)
.+-.+.+.+||
T Consensus 16 qvkklfkkwgw 26 (26)
T 1ytr_A 16 QVKKLFKKWGW 26 (26)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHHHcCC
Confidence 33445565565
No 227
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=29.38 E-value=1.1e+02 Score=19.28 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHh-cCCcEEEEEeecC-cc-----hhhHHHHHhCCCCCCce-EEEEec---CC--CchHHHHHHHHh
Q psy18065 61 SQKLLNAAFKDVIRF-LNWTKVAIVYEED-NG-----LFKLQELVKTPPTLKTE-MYIRHA---NP--STYRNVLREIRQ 127 (149)
Q Consensus 61 ~~~~~~~ai~~ll~~-~~W~~v~vi~~~~-~~-----~~~l~~l~~~~~~~~~~-v~~~~~---~~--~d~~~~l~~i~~ 127 (149)
+-..|-..+-+++.. .||.-+.+..|.+ .| ...++.+++..+...+. +.+..+ .. .+...++..+++
T Consensus 24 sl~~Q~~~~~~~a~~~~g~~~~~~~~D~g~Sg~~~~~Rp~l~~ll~~~~~g~id~vvv~~ldRl~R~~~~~~~~~~~l~~ 103 (169)
T 3g13_A 24 SYKSQVQYYTDMIKKNKEWVLADIYADEAITGTQVTKREDFQRMINDCMNGEIDMVFTKSISRFARNTLDTLKYVRMLKE 103 (169)
T ss_dssp SHHHHHHHHHHHHHTCTTEEEEEEEEEEC------CCSHHHHHHHHHHHTTCCSEEEESCHHHHCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEEeeCCccCCCcCCCHHHHHHHHHHHcCCCcEEEEEeccccccChHHHHHHHHHHHH
Confidence 344566777777754 5998777665543 22 34567777765554443 334333 32 356777888888
Q ss_pred CCCceEEEec
Q psy18065 128 KEIFNLIIDT 137 (149)
Q Consensus 128 ~~~~~iil~~ 137 (149)
.++..+.+.-
T Consensus 104 ~gv~l~~~~~ 113 (169)
T 3g13_A 104 RNIAVYFEDE 113 (169)
T ss_dssp TTCEEEETTT
T ss_pred cCCEEEEecC
Confidence 8877666543
No 228
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=29.29 E-value=75 Score=19.88 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhc------CCcEEEEEeecC--cch--hhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEE
Q psy18065 65 LNAAFKDVIRFL------NWTKVAIVYEED--NGL--FKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLI 134 (149)
Q Consensus 65 ~~~ai~~ll~~~------~W~~v~vi~~~~--~~~--~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~ii 134 (149)
...++...++.+ +-+++.++..|. .+. .......+..+..|+.+...-+... -.+.|++|-..+-..+.
T Consensus 84 ~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~~-~~~~L~~ia~~~~~~~~ 162 (182)
T 1shu_X 84 IHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDF-EQAQLERIADSKEQVFP 162 (182)
T ss_dssp HHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSSC-CHHHHHHHSSSGGGEEE
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCcC-CHHHHHHHhCCCCceEE
Confidence 445554444333 334566655442 221 1223333344456777665555422 35667888666533333
Q ss_pred EecCchhHHHHHh
Q psy18065 135 IDTSTTHISQFFR 147 (149)
Q Consensus 135 l~~~~~~~~~il~ 147 (149)
+..+.+.+..+++
T Consensus 163 ~~~~~~~L~~~~~ 175 (182)
T 1shu_X 163 VKGGFQALKGIIN 175 (182)
T ss_dssp SSSTTHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 3325555555544
No 229
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=29.27 E-value=51 Score=20.39 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=24.8
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
..++.|+.++.=+.....++..+++|++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 468899999888877788888889999874
No 230
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=29.14 E-value=43 Score=21.63 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=24.4
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
+++|.|+.++.=+.....+++ +++|++...
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 689999999888877777777 889988753
No 231
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=28.98 E-value=40 Score=22.17 Aligned_cols=31 Identities=6% Similarity=-0.062 Sum_probs=24.4
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
-+.++.|+.+|.=|.....++..+++|+|..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 3789999999888766666666669999884
No 232
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=28.83 E-value=1.1e+02 Score=21.79 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=30.4
Q ss_pred cEEEEEeecCcc----hhhHHHHHhCCCCCCceEEEEecC-CCchHHHHHHHHhCCCceEEEecCch
Q psy18065 79 TKVAIVYEEDNG----LFKLQELVKTPPTLKTEMYIRHAN-PSTYRNVLREIRQKEIFNLIIDTSTT 140 (149)
Q Consensus 79 ~~v~vi~~~~~~----~~~l~~l~~~~~~~~~~v~~~~~~-~~d~~~~l~~i~~~~~~~iil~~~~~ 140 (149)
+++.+|+.-..| ....+.+.+.++..|+.+.+.... ..+..++..+....+.+.||+.+-.-
T Consensus 25 ~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDG 91 (337)
T 2qv7_A 25 KRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG 91 (337)
T ss_dssp EEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHH
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCch
Confidence 567777653222 223344444444456555443322 23455555555555556666655443
No 233
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=28.77 E-value=40 Score=21.16 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=25.2
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
.+.+++||.++.=+.....+++.++.+++..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 3889999999888877777887778887764
No 234
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=28.76 E-value=1.8e+02 Score=21.55 Aligned_cols=75 Identities=8% Similarity=0.090 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCc--------E----EEEE----eecCcchhh---HHHHHhCCCCCCceEEEEecCCCchHHHHHH
Q psy18065 64 LLNAAFKDVIRFLNWT--------K----VAIV----YEEDNGLFK---LQELVKTPPTLKTEMYIRHANPSTYRNVLRE 124 (149)
Q Consensus 64 ~~~~ai~~ll~~~~W~--------~----v~vi----~~~~~~~~~---l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~ 124 (149)
.--+++-++++.||-. . +++| |.+++-... ++.+...+...++.+.+.........+.++.
T Consensus 27 ~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gyk~II~n~~~~~~~~~i~~ 106 (371)
T 3qi7_A 27 VQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEVQAIVVSTDQAGLLPALQK 106 (371)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTEEEEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCCeEEEEECCCcchHHHHHH
Confidence 3456666777777651 1 2222 445543332 6777777777777665543322223666788
Q ss_pred HHhCCCceEEEecC
Q psy18065 125 IRQKEIFNLIIDTS 138 (149)
Q Consensus 125 i~~~~~~~iil~~~ 138 (149)
++.+..+.|++.+.
T Consensus 107 lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 107 VKEKRPEIITISAP 120 (371)
T ss_dssp HHHHCTTSEEEESS
T ss_pred HHhcCCCEEEEecc
Confidence 88777777776654
No 235
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=28.26 E-value=41 Score=22.34 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=25.5
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
..++.|+.++.=+.....++..+++|+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 367899999888888888888889999886
No 236
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=28.03 E-value=30 Score=22.85 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
...+++||.++.=+.....++..++.++++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 37 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHISAG 37 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 36889999999888888889999999988753
No 237
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=27.88 E-value=52 Score=21.78 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=8.8
Q ss_pred hHHHHHHHHhCCCceEEEe
Q psy18065 118 YRNVLREIRQKEIFNLIID 136 (149)
Q Consensus 118 ~~~~l~~i~~~~~~~iil~ 136 (149)
+.+..++.+..+.++||..
T Consensus 66 l~~~~~~a~~~g~~ViIa~ 84 (181)
T 4b4k_A 66 MFEYAETARERGLKVIIAG 84 (181)
T ss_dssp HHHHHHHTTTTTCCEEEEE
T ss_pred HHHHHHHHHhcCceEEEEe
Confidence 3344444444455555543
No 238
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=27.67 E-value=43 Score=22.36 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=26.6
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
...+.|+.++.=+.....++..+++++++.+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 6788999998888888889999999998863
No 239
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=27.24 E-value=55 Score=22.55 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=28.4
Q ss_pred CCcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065 12 NGVQALFGPSDALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 12 ~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~ 44 (149)
...++++|+.++.=+.....+++.++.|++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 458999999999888888888898999988754
No 240
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=27.24 E-value=50 Score=21.48 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=25.4
Q ss_pred EEEEEeecCcchhhHHHHHhCCCCCCceEEEEecC----CCchHHHHHHHHhCCCceEEEec
Q psy18065 80 KVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN----PSTYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 80 ~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~----~~d~~~~l~~i~~~~~~~iil~~ 137 (149)
+|+++.-.+..+...++....+++.|+...++-.. ++.+.+..++.+..+.++||..+
T Consensus 5 ~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 66 (163)
T 3ors_A 5 KVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGA 66 (163)
T ss_dssp CEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 35555544333333444333333334443332221 12344445555555666655543
No 241
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=27.06 E-value=1.1e+02 Score=21.90 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=28.0
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceeecc
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMESRL 45 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~ 45 (149)
+.+.+.||+++.=+..+..++...+.|++....
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~ 84 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADA 84 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence 468899999988888888899999999987653
No 242
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=26.94 E-value=27 Score=22.77 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=23.4
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccC--CCcee
Q psy18065 14 VQALFGPSDALLGPHVQSICEALD--VPHME 42 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~--iP~is 42 (149)
+++|+||.++.=|.....+++.++ ++++.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 899999999888877777888776 66554
No 243
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=26.94 E-value=51 Score=21.70 Aligned_cols=19 Identities=5% Similarity=0.085 Sum_probs=9.2
Q ss_pred hHHHHHHHHhCCCceEEEe
Q psy18065 118 YRNVLREIRQKEIFNLIID 136 (149)
Q Consensus 118 ~~~~l~~i~~~~~~~iil~ 136 (149)
+.+..++.+..+.++||..
T Consensus 56 ~~~~~~~a~~~g~~ViIa~ 74 (174)
T 3kuu_A 56 LFSFAEQAEANGLHVIIAG 74 (174)
T ss_dssp HHHHHHHTTTTTCSEEEEE
T ss_pred HHHHHHHHHhCCCcEEEEE
Confidence 3444444444555555543
No 244
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=26.82 E-value=1.5e+02 Score=20.68 Aligned_cols=69 Identities=12% Similarity=0.160 Sum_probs=41.7
Q ss_pred EEEEEeecCcchhhHHHHHhCCCCCCceEEEE--ecC--CCc-------hHHHHHHHHhCCCceEEEecCchhH--HHHH
Q psy18065 80 KVAIVYEEDNGLFKLQELVKTPPTLKTEMYIR--HAN--PST-------YRNVLREIRQKEIFNLIIDTSTTHI--SQFF 146 (149)
Q Consensus 80 ~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~--~~~--~~d-------~~~~l~~i~~~~~~~iil~~~~~~~--~~il 146 (149)
.++++=++-.|+..+..+.+.+-...+-..-. +++ ..+ ..+..+.+.+.+++.||+-|+...+ ..-+
T Consensus 9 pIgvfDSGvGGLtv~~~i~~~lp~~~~iy~~D~a~~PYG~~~~~~i~~~~~~~~~~L~~~g~~~iVIACNTa~~~al~~l 88 (268)
T 3out_A 9 PIGVFDSGIGGLTIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIV 88 (268)
T ss_dssp CEEEEESSSTTHHHHHHHHHHCTTCCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHH
T ss_pred cEEEEECCCChHHHHHHHHHHCCCCcEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChHHHHHHHH
Confidence 45655444567888888888765544322111 122 122 2344567788999999999988653 3444
Q ss_pred hh
Q psy18065 147 RA 148 (149)
Q Consensus 147 ~q 148 (149)
++
T Consensus 89 r~ 90 (268)
T 3out_A 89 QE 90 (268)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 245
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=26.68 E-value=69 Score=19.45 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=14.7
Q ss_pred CChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065 60 PSQKLLNAAFKDVIRFLNWTKVAIVYE 86 (149)
Q Consensus 60 p~~~~~~~ai~~ll~~~~W~~v~vi~~ 86 (149)
+.+...+..+.+.++.+|+ .|..+..
T Consensus 14 ~~~~~~g~~v~~~L~~~g~-~V~pVnP 39 (122)
T 3ff4_A 14 PETNRYAYLAAERLKSHGH-EFIPVGR 39 (122)
T ss_dssp SCTTSHHHHHHHHHHHHTC-CEEEESS
T ss_pred CCCCCHHHHHHHHHHHCCC-eEEEECC
Confidence 3344466677776666676 4444443
No 246
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=26.36 E-value=50 Score=20.94 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=25.5
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
++.+.|+.++.=+.....++..++.|+++.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 688999999888888888888889998874
No 247
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=25.94 E-value=1.2e+02 Score=18.46 Aligned_cols=75 Identities=8% Similarity=0.075 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEeecC-cc----hhhHHHHHhCCCCCCce-EEEEec---CC--Cc-hHHHHHHHHhCC
Q psy18065 62 QKLLNAAFKDVIRFLNWTKVAIVYEED-NG----LFKLQELVKTPPTLKTE-MYIRHA---NP--ST-YRNVLREIRQKE 129 (149)
Q Consensus 62 ~~~~~~ai~~ll~~~~W~~v~vi~~~~-~~----~~~l~~l~~~~~~~~~~-v~~~~~---~~--~d-~~~~l~~i~~~~ 129 (149)
...|-..+-++....||.-+.+..+.+ .| ...++.+++..+...+. +.+..+ .. .+ ...++..+++.+
T Consensus 23 l~~Q~~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d~lvv~~ldRl~R~~~~~~~~~~~~l~~~g 102 (138)
T 3bvp_A 23 IDEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFDTVLVYKLDRLSRSVRDTLYLVKDVFTKNK 102 (138)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCSEEEESSHHHHCSCHHHHHHHHHHTTGGGT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCCEEEEEeCCcccccHHHHHHHHHHHHHHCC
Confidence 345777888888888998777655543 23 45677788776654443 444333 32 23 334556677788
Q ss_pred CceEEEe
Q psy18065 130 IFNLIID 136 (149)
Q Consensus 130 ~~~iil~ 136 (149)
.+.+.+.
T Consensus 103 v~l~~~~ 109 (138)
T 3bvp_A 103 IDFISLN 109 (138)
T ss_dssp CEEEETT
T ss_pred CEEEEec
Confidence 7666553
No 248
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=25.69 E-value=1.1e+02 Score=21.50 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=26.4
Q ss_pred cEEEEEeecCc--c--hhhHHHHHhCCCCCCceEEEEecC-CCchHHHHHHHHhCCCceEEEecCc
Q psy18065 79 TKVAIVYEEDN--G--LFKLQELVKTPPTLKTEMYIRHAN-PSTYRNVLREIRQKEIFNLIIDTST 139 (149)
Q Consensus 79 ~~v~vi~~~~~--~--~~~l~~l~~~~~~~~~~v~~~~~~-~~d~~~~l~~i~~~~~~~iil~~~~ 139 (149)
+++.+|+.-.. + ....+.+...+...++.+.+.... ..+..++..++.+ +.+.||+.+-.
T Consensus 9 ~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GGD 73 (304)
T 3s40_A 9 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFGGD 73 (304)
T ss_dssp SSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEECH
T ss_pred CEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEccc
Confidence 45566655321 1 123334444333445444443322 2445555555543 44555554433
No 249
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}
Probab=25.50 E-value=96 Score=25.38 Aligned_cols=20 Identities=0% Similarity=-0.107 Sum_probs=9.5
Q ss_pred hHHHHHHHHhCCCceEEEec
Q psy18065 118 YRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 118 ~~~~l~~i~~~~~~~iil~~ 137 (149)
..+.+++++..+.++.++-|
T Consensus 572 ~~~~~~~l~~~G~~v~~~~~ 591 (795)
T 3slk_A 572 AAELVAQLTAYGAEVSLQAC 591 (795)
T ss_dssp HHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHhcCCcEEEEEe
Confidence 34444555554444444444
No 250
>1xxa_A ARGR, arginine repressor; complex (DNA binding protein/peptide); HET: ARG; 2.20A {Escherichia coli K12} SCOP: d.74.2.1 PDB: 1xxb_A* 1xxc_A
Probab=25.48 E-value=93 Score=17.23 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=23.7
Q ss_pred EEEecCChhHHHHHHHHHHHhc-CCc-EEEEEeecC
Q psy18065 55 SVNLYPSQKLLNAAFKDVIRFL-NWT-KVAIVYEED 88 (149)
Q Consensus 55 ~~~~~p~~~~~~~ai~~ll~~~-~W~-~v~vi~~~~ 88 (149)
.+++.|. .+.+++.++.+. .|. =++.|..||
T Consensus 19 VikT~PG---~A~~va~~iD~~~~~~~I~GTIAGDD 51 (78)
T 1xxa_A 19 VIHTSPG---AAQLIARLLDSLGKAEGILGTIAGDD 51 (78)
T ss_dssp EEEESTT---THHHHHHHHTTTTTTTTEEEEEECSS
T ss_pred EEEeCCC---cHHHHHHHHHhcCCCCCeEEEEecCC
Confidence 7899998 577899999865 788 566666555
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=25.39 E-value=54 Score=21.75 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCCCcHHHHHHhhccc
Q psy18065 12 NGVQALFGPSDALLGPHVQSICEAL 36 (149)
Q Consensus 12 ~~v~aiiGp~~s~~~~~v~~~~~~~ 36 (149)
..+.+|+||+++.=+..+.-+++.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4599999999988887888888766
No 252
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=25.36 E-value=70 Score=19.47 Aligned_cols=15 Identities=7% Similarity=0.131 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHhcC
Q psy18065 63 KLLNAAFKDVIRFLN 77 (149)
Q Consensus 63 ~~~~~ai~~ll~~~~ 77 (149)
...++.+.+-+...|
T Consensus 16 ~~~A~~ia~~l~~~g 30 (148)
T 3f6r_A 16 ESIAQKLEELIAAGG 30 (148)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCC
Confidence 344555555554444
No 253
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=24.98 E-value=1.1e+02 Score=19.55 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=26.8
Q ss_pred CchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065 116 STYRNVLREIRQKEIFNLIIDTSTTHISQFFRA 148 (149)
Q Consensus 116 ~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q 148 (149)
.|..++++.+++.+.+.|.+.+-......++++
T Consensus 96 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~~ 128 (178)
T 3jtw_A 96 QSPVELVKRIQKEKGKDVWIVGGAKIIDPLVQA 128 (178)
T ss_dssp SCHHHHHHHHHTSSCCEEEEEECHHHHHHHHHT
T ss_pred CCHHHHHHHHHhCCCCEEEEEChHHHHHHHHHC
Confidence 478899999998888888888888777777753
No 254
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=24.89 E-value=37 Score=24.91 Aligned_cols=78 Identities=3% Similarity=-0.110 Sum_probs=42.3
Q ss_pred ccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecCcchhh-HHHHHhCCCCCCceEEEEecCC----CchHHHHHHHHh
Q psy18065 53 EFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFK-LQELVKTPPTLKTEMYIRHANP----STYRNVLREIRQ 127 (149)
Q Consensus 53 ~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~~~~~~-l~~l~~~~~~~~~~v~~~~~~~----~d~~~~l~~i~~ 127 (149)
|.-+...+.. ...+.++++.+| +++.+|++..-.... .+.+.+.++..|+.+. .++. ++..+..+.+++
T Consensus 20 p~~i~~G~g~---l~~l~~~l~~~g-~~~liVtd~~~~~~~~~~~v~~~L~~~g~~~~--~~~ge~~~~~v~~~~~~~~~ 93 (376)
T 1kq3_A 20 PGRYVQGAGA---INILEEELSRFG-ERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQ--IFGGECSDEEIERLSGLVEE 93 (376)
T ss_dssp CSEEEEETTG---GGGHHHHHHTTC-SEEEEEECHHHHHHTTCTTGGGGCSSSEEEEE--ECCSSCBHHHHHHHHTTCCT
T ss_pred CceEEECCCH---HHHHHHHHHHcC-CeEEEEECccHHhhccHHHHHHHHHHcCCeEE--EeCCCCCHHHHHHHHHHHhc
Confidence 3344455542 123556777778 999999875321122 4555556655554332 2322 134455555556
Q ss_pred CCCceEEEec
Q psy18065 128 KEIFNLIIDT 137 (149)
Q Consensus 128 ~~~~~iil~~ 137 (149)
+.+.||-.+
T Consensus 94 -~~d~IIavG 102 (376)
T 1kq3_A 94 -ETDVVVGIG 102 (376)
T ss_dssp -TCCEEEEEE
T ss_pred -CCCEEEEeC
Confidence 777888665
No 255
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=24.77 E-value=54 Score=21.57 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=30.1
Q ss_pred EEEEEeecCcchhhHHHHHhCCCCCCceEEEEecC----CCchHHHHHHHHhCCCceEEEec
Q psy18065 80 KVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN----PSTYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 80 ~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~----~~d~~~~l~~i~~~~~~~iil~~ 137 (149)
+|+++.-.+..+...++....++..|+...++-.. ++.+.+.+++....+.++||..+
T Consensus 9 ~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 70 (174)
T 3lp6_A 9 RVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGA 70 (174)
T ss_dssp SEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred eEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 46666654444444444444333445544432221 23456666666667777766644
No 256
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=24.68 E-value=1.6e+02 Score=20.69 Aligned_cols=68 Identities=22% Similarity=0.153 Sum_probs=42.1
Q ss_pred EEEEEeecCcchhhHHHHHhCCCCCCceEEEE---ecC--CCc---h----HHHHHHHHhCCCceEEEecCchhH--HHH
Q psy18065 80 KVAIVYEEDNGLFKLQELVKTPPTLKTEMYIR---HAN--PST---Y----RNVLREIRQKEIFNLIIDTSTTHI--SQF 145 (149)
Q Consensus 80 ~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~---~~~--~~d---~----~~~l~~i~~~~~~~iil~~~~~~~--~~i 145 (149)
.++++=++-.|+..+..+.+.+-...+- .+- +++ ..+ . .+..+.+.+.+++.||+-|+...+ ..-
T Consensus 26 ~IgvfDSGvGGLtv~~~i~~~lP~e~~i-y~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~ 104 (274)
T 3uhf_A 26 KIGVFDSGVGGLSVLKSLYEARLFDEII-YYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDA 104 (274)
T ss_dssp EEEEEESSSTTHHHHHHHHHTTCCSEEE-EEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHH
T ss_pred eEEEEECCCChHHHHHHHHHHCCCCCEE-EEecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHH
Confidence 4555544556788888888887555432 232 222 222 2 344567778899999999988653 344
Q ss_pred Hhh
Q psy18065 146 FRA 148 (149)
Q Consensus 146 l~q 148 (149)
+++
T Consensus 105 lr~ 107 (274)
T 3uhf_A 105 LRA 107 (274)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 257
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=24.39 E-value=1e+02 Score=20.07 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=26.2
Q ss_pred HHHhh--CCcEEEEcCCCC--CcHHHHHHhhcccCCCceeec
Q psy18065 7 CRQLQ--NGVQALFGPSDA--LLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 7 c~~~~--~~v~aiiGp~~s--~~~~~v~~~~~~~~iP~is~~ 44 (149)
.+++. +..+.++|+ .. .....+..+++. ++|+++..
T Consensus 29 a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~ 68 (174)
T 1ytl_A 29 ANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATG 68 (174)
T ss_dssp HHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEET
T ss_pred HHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcc
Confidence 55554 567888888 64 334567789999 99999864
No 258
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=24.35 E-value=64 Score=21.09 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=23.6
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
+++|.|+.+|.=+.....++. +++|++..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 789999999888777677766 88998875
No 259
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=24.21 E-value=60 Score=21.00 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=25.2
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
.+.+++||.++.=+.....+++.++.+++..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~ 60 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAEA 60 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEEG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEcc
Confidence 4899999999888877788888887777763
No 260
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=24.07 E-value=1e+02 Score=19.86 Aligned_cols=32 Identities=6% Similarity=0.155 Sum_probs=26.2
Q ss_pred chHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065 117 TYRNVLREIRQKEIFNLIIDTSTTHISQFFRA 148 (149)
Q Consensus 117 d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q 148 (149)
|..+++..+++.+.+.|.+.+-......++++
T Consensus 106 ~l~~~l~~L~~~~~~~i~v~GG~~l~~~~l~~ 137 (189)
T 2gd9_A 106 NILEEVNKLKKNPGKDIWLYGGASLITTFINL 137 (189)
T ss_dssp HHHHHHHHHHHSCCSEEEEEECHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCeEEEEChHHHHHHHHHC
Confidence 67888999998888888888888877777764
No 261
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=23.98 E-value=69 Score=20.18 Aligned_cols=30 Identities=13% Similarity=-0.038 Sum_probs=23.6
Q ss_pred cEEEEcCCCCCcHHHHHHhhccc---CCCceee
Q psy18065 14 VQALFGPSDALLGPHVQSICEAL---DVPHMES 43 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~---~iP~is~ 43 (149)
+.++.|+.+|.=+.....++..+ ++|++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47889999987777777777766 8998875
No 262
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=23.96 E-value=89 Score=21.69 Aligned_cols=33 Identities=6% Similarity=0.164 Sum_probs=27.9
Q ss_pred CchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065 116 STYRNVLREIRQKEIFNLIIDTSTTHISQFFRA 148 (149)
Q Consensus 116 ~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q 148 (149)
.|..+++..+++.+.+.|.+.+-..-+..++++
T Consensus 174 ~dl~~~l~~L~~~g~~~vlvEGG~~l~~sfL~a 206 (270)
T 2p4g_A 174 NPLKIAFDALHARRLKKISIEGGPSVYRQALSL 206 (270)
T ss_dssp CHHHHHHHHHHTTTCCEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCEEEEecCHHHHHHHHHC
Confidence 378899999999999999998888877777764
No 263
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=23.71 E-value=1.7e+02 Score=19.62 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecC---CCchHHHHHHHHhC--CCceEEEe
Q psy18065 65 LNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN---PSTYRNVLREIRQK--EIFNLIID 136 (149)
Q Consensus 65 ~~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~---~~d~~~~l~~i~~~--~~~~iil~ 136 (149)
.+.+++..+..-||+ |.++..++.....++++.+.....+ +.+...+ .++..++++++.+. ..+.+|-.
T Consensus 21 IG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~ 94 (266)
T 3oig_A 21 IAWGIARSLHEAGAR-LIFTYAGERLEKSVHELAGTLDRND--SIILPCDVTNDAEIETCFASIKEQVGVIHGIAHC 94 (266)
T ss_dssp HHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHTSSSCC--CEEEECCCSSSHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHHHCCCE-EEEecCchHHHHHHHHHHHhcCCCC--ceEEeCCCCCHHHHHHHHHHHHHHhCCeeEEEEc
Confidence 788888877777986 5555444444555666665543322 2333333 24567777777654 44555543
No 264
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=23.54 E-value=46 Score=24.30 Aligned_cols=30 Identities=7% Similarity=0.140 Sum_probs=24.9
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
+++|.||+++.=+.....++..++.++|+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~ 38 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISG 38 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceecc
Confidence 789999999888877788888888777763
No 265
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=23.48 E-value=2.1e+02 Score=20.56 Aligned_cols=57 Identities=16% Similarity=0.015 Sum_probs=25.8
Q ss_pred HHHhcCCcEEEEEeecCcch--hhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhC
Q psy18065 72 VIRFLNWTKVAIVYEEDNGL--FKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQK 128 (149)
Q Consensus 72 ll~~~~W~~v~vi~~~~~~~--~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~ 128 (149)
........++.++|...+|. ..++.+.+.+...|..+.+..+...+..++...+.+.
T Consensus 245 ~~~~~~~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~ 303 (398)
T 1ycg_A 245 WAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDA 303 (398)
T ss_dssp HHHTCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHC
T ss_pred HhccCCcCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHC
Confidence 33333357788888765542 3344444433333444433333222333444444433
No 266
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=23.37 E-value=56 Score=23.87 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=26.0
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
+.+|+||+.+.=+.....++..++.++|+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~ 71 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINS 71 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEEC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcc
Confidence 789999999888888888999999888774
No 267
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=23.33 E-value=54 Score=20.92 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=26.2
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcc-cCCCceeec
Q psy18065 13 GVQALFGPSDALLGPHVQSICEA-LDVPHMESR 44 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~-~~iP~is~~ 44 (149)
...++.|+.++.=+.....++.. +++|++...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 47899999998888777778887 699999864
No 268
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Probab=23.28 E-value=1.2e+02 Score=23.07 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCC---chHHHHHHHHhCCCceEEEec
Q psy18065 62 QKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPS---TYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 62 ~~~~~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~---d~~~~l~~i~~~~~~~iil~~ 137 (149)
..-++..++..+-.-|+++|.++..+......++++.+.+...|..+.+...+.. ++..+++.+++.+.-.+|+++
T Consensus 235 tGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~~g~ld~VIh~ 313 (486)
T 2fr1_A 235 TGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDVPLSAVFHA 313 (486)
T ss_dssp TSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEC
Confidence 3457888888776668988887765432222223333222223445555455433 355566666333333455554
No 269
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=23.27 E-value=1e+02 Score=17.12 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=24.6
Q ss_pred HHHHHhhCC--cEEEEcCCC-CCcHHHHHHhhcccCCCceeec
Q psy18065 5 TMCRQLQNG--VQALFGPSD-ALLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 5 ~~c~~~~~~--v~aiiGp~~-s~~~~~v~~~~~~~~iP~is~~ 44 (149)
...+.+++| -..|+.... +.....+..+|..++||.+.+.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 18 QTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 445556543 233444433 3445566778999999998765
No 270
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=23.26 E-value=1.1e+02 Score=19.47 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=28.6
Q ss_pred HHHHHHhh--CCcEEEEcCCCC--CcHHHHHHhhcccCCCceeec
Q psy18065 4 ATMCRQLQ--NGVQALFGPSDA--LLGPHVQSICEALDVPHMESR 44 (149)
Q Consensus 4 ~~~c~~~~--~~v~aiiGp~~s--~~~~~v~~~~~~~~iP~is~~ 44 (149)
+.+.+++. ++.+.++|.... .....+..+++.+++|+++..
T Consensus 25 ~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~ 69 (170)
T 3cf4_G 25 EMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATG 69 (170)
T ss_dssp HHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECT
T ss_pred HHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECc
Confidence 34455554 467777777543 345678899999999998854
No 271
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=23.25 E-value=87 Score=20.75 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=30.7
Q ss_pred cCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecC----CCchHHHHHHHHhCCCceEEEec
Q psy18065 76 LNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN----PSTYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 76 ~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~----~~d~~~~l~~i~~~~~~~iil~~ 137 (149)
..-..|++|.-.+..+...++....++..|+...++-.. ++.+.+..++....+.++||..+
T Consensus 11 ~~~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~A 76 (183)
T 1o4v_A 11 HHVPRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGA 76 (183)
T ss_dssp ---CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred cCCCeEEEEeccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEec
Confidence 345567777655444444554444444456554443222 13445555555556667666644
No 272
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=22.47 E-value=1.9e+02 Score=19.69 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=39.5
Q ss_pred EEEEEeecCcchhhHHHHHhCCCCCCceEEEEe---cC--CC-------chHHHHHHHHhCCCceEEEecCchh--HHHH
Q psy18065 80 KVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH---AN--PS-------TYRNVLREIRQKEIFNLIIDTSTTH--ISQF 145 (149)
Q Consensus 80 ~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~---~~--~~-------d~~~~l~~i~~~~~~~iil~~~~~~--~~~i 145 (149)
.++++-++-.|+..+.++.+..-... -+.+-. ++ .. ...+..+.+.+.+++.|++-|+... ...-
T Consensus 2 ~IgvfDSG~Ggltv~~~l~~~~P~~~-~iy~~D~~~~pyG~~s~~~i~~~~~~~~~~L~~~g~d~iviaCnTa~~~~~~~ 80 (254)
T 1b73_A 2 KIGIFDSGVGGLTVLKAIRNRYRKVD-IVYLGDTARVPYGIRSKDTIIRYSLECAGFLKDKGVDIIVVACNTASAYALER 80 (254)
T ss_dssp EEEEEESSSGGGTHHHHHHHHSTTCE-EEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHTTSHHH
T ss_pred cEEEEECCccHHHHHHHHHHhCCCCc-EEEeecCCCCCCCcCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHH
Confidence 35666444457777888887654432 223221 22 11 1234566777889999999998764 3444
Q ss_pred Hh
Q psy18065 146 FR 147 (149)
Q Consensus 146 l~ 147 (149)
++
T Consensus 81 lr 82 (254)
T 1b73_A 81 LK 82 (254)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 273
>3no4_A Creatininase, creatinine amidohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.00A {Nostoc punctiforme pcc 73102}
Probab=22.27 E-value=2.1e+02 Score=20.06 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=29.5
Q ss_pred hcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHH---HhcCCcEEEEEeecC
Q psy18065 33 CEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVI---RFLNWTKVAIVYEED 88 (149)
Q Consensus 33 ~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll---~~~~W~~v~vi~~~~ 88 (149)
.+-+-.|.+.|+.+..-..+|-.+.+.|. .+...+.+++ ...|++++.++-...
T Consensus 74 ~~~~v~P~i~yG~s~~h~~fpGTisl~~~--t~~~~l~di~~sl~~~G~~~iv~vNgHG 130 (267)
T 3no4_A 74 TGAIVGPTINVGMALHHTAFPGTISLRPS--TLIQVVRDYVTCLAKAGFSKFYFINGHG 130 (267)
T ss_dssp HTCEECCCBCCCCCGGGTTSTTCBCCCHH--HHHHHHHHHHHHHHHHTCCEEEEEECCT
T ss_pred CCcEEeCCEeecccccccCCCCeEEeCHH--HHHHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 34445666777654322233433444443 3444555544 456999999986543
No 274
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=22.27 E-value=2e+02 Score=19.83 Aligned_cols=133 Identities=11% Similarity=0.111 Sum_probs=61.4
Q ss_pred HHhhCCcEEEEcCCCCCcHHHHHHhhccc-CCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh-cCCcEEEEEe
Q psy18065 8 RQLQNGVQALFGPSDALLGPHVQSICEAL-DVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF-LNWTKVAIVY 85 (149)
Q Consensus 8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~-~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~-~~W~~v~vi~ 85 (149)
.+.++++.+||+.... ....+..++..+ ++|++.........+ ...+......-+.....++.+ .+-++|++|.
T Consensus 58 ~l~~~~vdgIi~~~~~-~~~~~~~~~~~~p~~p~v~id~~~~~~~---~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~ 133 (296)
T 2hqb_A 58 ELVDGGVNLIFGHGHA-FAEYFSTIHNQYPDVHFVSFNGEVKGEN---ITSLHFEGYAMGYFGGMVAASMSETHKVGVIA 133 (296)
T ss_dssp HHHHTTCCEEEECSTH-HHHHHHTTTTSCTTSEEEEESCCCCSSS---EEEEEECCHHHHHHHHHHHHHTCSSSEEEEEE
T ss_pred HHHHCCCCEEEEcCHh-HHHHHHHHHHHCCCCEEEEEecCcCCCC---EEEEEechHHHHHHHHHHHHhhccCCeEEEEc
Confidence 4456788999875432 233355555544 788887653221111 112222322222222223333 2458999997
Q ss_pred ecCcchhhHHHHHhCCCCCCce-EEEEecCC-C---chHHHHHHHHhCCCceEEEecCchhHHHHH
Q psy18065 86 EEDNGLFKLQELVKTPPTLKTE-MYIRHANP-S---TYRNVLREIRQKEIFNLIIDTSTTHISQFF 146 (149)
Q Consensus 86 ~~~~~~~~l~~l~~~~~~~~~~-v~~~~~~~-~---d~~~~l~~i~~~~~~~iil~~~~~~~~~il 146 (149)
..+... +...+.+.++..|.. +....... . .-.+..+.+.+.++++|+ .++...+..++
T Consensus 134 g~~~~~-r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~-~~~D~~a~Gv~ 197 (296)
T 2hqb_A 134 AFPWQP-EVEGFVDGAKYMNESEAFVRYVGEWTDADKALELFQELQKEQVDVFY-PAGDGYHVPVV 197 (296)
T ss_dssp SCTTCH-HHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHHHHHHHHTTTCCEEE-CCCTTTHHHHH
T ss_pred CcCchh-hHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHHHCCCcEEE-ECCCCCCHHHH
Confidence 543222 656555544444432 22211111 1 234555666666665444 33333333343
No 275
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=22.25 E-value=2e+02 Score=21.24 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=40.0
Q ss_pred HHHHHHhcCCcEEEEEeecC-cchh-hHHHHHhCCCCCCceEEE-EecC--C--CchHHHHHHHHhCCCceEEEec
Q psy18065 69 FKDVIRFLNWTKVAIVYEED-NGLF-KLQELVKTPPTLKTEMYI-RHAN--P--STYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 69 i~~ll~~~~W~~v~vi~~~~-~~~~-~l~~l~~~~~~~~~~v~~-~~~~--~--~d~~~~l~~i~~~~~~~iil~~ 137 (149)
+.+.++ +| +++.+|+++. .... ..+.+.+.++ |+.+.. .... + +...+.++.+++.+++.||-.+
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG 114 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVG 114 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 445556 68 8999988754 2221 3455655554 655433 2232 2 3456777888888899988765
No 276
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=22.00 E-value=2.3e+02 Score=20.41 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=25.3
Q ss_pred CcEEEEEeecCcch--hhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhC
Q psy18065 78 WTKVAIVYEEDNGL--FKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQK 128 (149)
Q Consensus 78 W~~v~vi~~~~~~~--~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~ 128 (149)
-+++.++|...+|. ...+.+.+.+...|..+....+...+..++...+.+.
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~ 304 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDA 304 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTC
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHC
Confidence 47899998875553 3344444433334444444343333344444444443
No 277
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=21.99 E-value=1.4e+02 Score=18.87 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=25.8
Q ss_pred CchHHHHHHHHhCCCceEEEecCchhHHHHHh
Q psy18065 116 STYRNVLREIRQKEIFNLIIDTSTTHISQFFR 147 (149)
Q Consensus 116 ~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~ 147 (149)
.|..+++..+++.+.+.|.+.+-......+++
T Consensus 80 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~ 111 (168)
T 1cz3_A 80 GSPADVVKFLEGKGYERVAVIGGKTVFTEFLR 111 (168)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 47888999998888788888888777777765
No 278
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=21.76 E-value=81 Score=23.50 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=45.8
Q ss_pred ccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCC-------CchHHHHHHH
Q psy18065 53 EFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP-------STYRNVLREI 125 (149)
Q Consensus 53 ~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~-------~d~~~~l~~i 125 (149)
+|-+...+..... +- +++.++.+++.+|++..-.....+.+.+.++..|+.+....++. +...+.+..+
T Consensus 41 ~y~I~~G~g~l~~---l~-~l~~~~~~rvlIVtd~~v~~~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l 116 (390)
T 3okf_A 41 SYPISIGAGLFAN---PA-LLSLSAKQKVVIVTNHTVAPLYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFL 116 (390)
T ss_dssp CEEEEEETTGGGC---GG-GGCCCTTCEEEEEEETTTHHHHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHH
T ss_pred CCCEEEeCCHHHh---HH-HHHhcCCCEEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHH
Confidence 5556666653221 22 44555778999999875333345555555555566554333321 2456667777
Q ss_pred HhCCC---ceEEEec
Q psy18065 126 RQKEI---FNLIIDT 137 (149)
Q Consensus 126 ~~~~~---~~iil~~ 137 (149)
++.+. +.||-.+
T Consensus 117 ~~~~~~R~d~IIAvG 131 (390)
T 3okf_A 117 LEHNYSRDVVVIALG 131 (390)
T ss_dssp HHTTCCTTCEEEEEE
T ss_pred HhcCCCcCcEEEEEC
Confidence 77766 4666655
No 279
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=21.68 E-value=81 Score=20.64 Aligned_cols=58 Identities=9% Similarity=0.086 Sum_probs=25.7
Q ss_pred EEEEEeecCcchhhHHHHHhCCCCCCceEEEEecC----CCchHHHHHHHHhCCCceEEEec
Q psy18065 80 KVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN----PSTYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 80 ~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~----~~d~~~~l~~i~~~~~~~iil~~ 137 (149)
.|++|.-.+..+...++....+++.|+...++-.. ++.+.+..++.+..+.++||..+
T Consensus 13 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~A 74 (170)
T 1xmp_A 13 LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGA 74 (170)
T ss_dssp SEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred cEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 35555544434444444333333345544432221 12344444444455566666543
No 280
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=21.45 E-value=57 Score=23.64 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=26.4
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
.+.+|.||+.+.=+.....++..++.+.|+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~ 41 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISV 41 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEec
Confidence 3789999999888888888999998888874
No 281
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=21.43 E-value=1.3e+02 Score=19.43 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=30.2
Q ss_pred EEEEEeecCcchhhHHHHHhCCCCCCceEEEEecC----CCchHHHHHHHHhC-CCceEEEec
Q psy18065 80 KVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN----PSTYRNVLREIRQK-EIFNLIIDT 137 (149)
Q Consensus 80 ~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~----~~d~~~~l~~i~~~-~~~~iil~~ 137 (149)
+|+++.-++..+...++....+++.|+...++-.. ++.+.+..++.... +.++||..+
T Consensus 4 ~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~A 66 (159)
T 3rg8_A 4 LVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIA 66 (159)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEEC
T ss_pred eEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEEC
Confidence 46666655444444555444444456655443222 13455555555554 467777655
No 282
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=21.33 E-value=56 Score=23.64 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=26.4
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
+.+|+||+.+.=+.....++..++.++|+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~ 36 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISV 36 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence 789999999888888888899999888885
No 283
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=21.05 E-value=97 Score=19.64 Aligned_cols=31 Identities=16% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEecCChhHHHHHHHHHHHhcCCcEEE-EEeecC
Q psy18065 55 SVNLYPSQKLLNAAFKDVIRFLNWTKVA-IVYEED 88 (149)
Q Consensus 55 ~~~~~p~~~~~~~ai~~ll~~~~W~~v~-vi~~~~ 88 (149)
.+++.|. .+.+++.++.+.+|..|. .|..||
T Consensus 95 VikT~PG---~A~~va~~iD~~~~~eIlGTIAGDD 126 (149)
T 1b4a_A 95 VLRTLPG---NAHAIGVLLDNLDWDEIVGTICGDD 126 (149)
T ss_dssp EEEESTT---CHHHHHHHHHHHTCTTEEEEEECSS
T ss_pred EEEeCCC---cHHHHHHHHHhCCCCCeEEEEecCC
Confidence 6777787 466777788777887754 344334
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=20.96 E-value=62 Score=20.13 Aligned_cols=30 Identities=3% Similarity=-0.013 Sum_probs=23.6
Q ss_pred cEEEEcCCCCCcHHHHHHhhc-ccCCCceee
Q psy18065 14 VQALFGPSDALLGPHVQSICE-ALDVPHMES 43 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~-~~~iP~is~ 43 (149)
+..+.|+.++.=+.....++. ..+.++++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCcEEecH
Confidence 678899999888777777777 677777764
No 285
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=20.88 E-value=68 Score=20.41 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=24.0
Q ss_pred cEEEEcCCCCCcHHHHHHhhcccCCCcee
Q psy18065 14 VQALFGPSDALLGPHVQSICEALDVPHME 42 (149)
Q Consensus 14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is 42 (149)
..++.|+.++.=+.....++..++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999988888888888888887653
No 286
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=20.59 E-value=1.1e+02 Score=19.04 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCceee
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHMES 43 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 43 (149)
.++.+.|++++.=+.....++..++.|++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~ 34 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAF 34 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEe
Confidence 4788999999888888888888888887753
No 287
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=20.43 E-value=54 Score=24.86 Aligned_cols=69 Identities=3% Similarity=-0.108 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCC----CchHHHHHHHHhCCCceEEEec
Q psy18065 68 AFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP----STYRNVLREIRQKEIFNLIIDT 137 (149)
Q Consensus 68 ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~----~d~~~~l~~i~~~~~~~iil~~ 137 (149)
.+.++++.+|-+++.+|++..-.....+.+.+.++..|+.+.+..++. ++..+..+.+++ +.+.||-.+
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvG 153 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVG 153 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHHHTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEE
T ss_pred HHHHHHHhcCCCEEEEEECccHHHHHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeC
Confidence 355667777866899998753211234445544444566553322322 234455555566 778888665
No 288
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=20.35 E-value=59 Score=21.97 Aligned_cols=30 Identities=7% Similarity=-0.071 Sum_probs=26.5
Q ss_pred CcEEEEcCCCCCcHHHHHHhhcccCCCcee
Q psy18065 13 GVQALFGPSDALLGPHVQSICEALDVPHME 42 (149)
Q Consensus 13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 42 (149)
.+.+|-|+.++.-+.....++..+++|++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 488999999999888888899999999987
No 289
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=20.10 E-value=2.2e+02 Score=19.44 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=35.9
Q ss_pred EEEEeecCcchhhHHHHHhCCCCCCceEEEE---ecC--CCc-------hHHHHHHHHhCCCceEEEecCchh
Q psy18065 81 VAIVYEEDNGLFKLQELVKTPPTLKTEMYIR---HAN--PST-------YRNVLREIRQKEIFNLIIDTSTTH 141 (149)
Q Consensus 81 v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~---~~~--~~d-------~~~~l~~i~~~~~~~iil~~~~~~ 141 (149)
++++=++-.|+..+.++.+.+-...+ +.+- +.+ ..+ ..+..+.+.+.+++.|++-|+...
T Consensus 3 igvfDSG~GGltv~~~l~~~lP~~~~-iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTa~ 74 (255)
T 2jfz_A 3 IGVFDSGVGGFSVLKSLLKARLFDEI-IYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTAS 74 (255)
T ss_dssp EEEEESSSTTHHHHHHHHHTTCCSEE-EEEECTTTCCCTTSCHHHHHHHHHHHHHHHGGGCCSCEEECCHHHH
T ss_pred EEEEECCccHHHHHHHHHHHCCCCCE-EEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhh
Confidence 44443344677888888887644322 2221 222 111 234456677889999999998765
No 290
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=20.00 E-value=1.4e+02 Score=18.41 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=18.6
Q ss_pred ceEEEEecCCCchHHHHHHHHhCCCceEEEecC
Q psy18065 106 TEMYIRHANPSTYRNVLREIRQKEIFNLIIDTS 138 (149)
Q Consensus 106 ~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~ 138 (149)
+++.+.-+++....+++..+.+.+.+.|+++..
T Consensus 71 ~Dlvii~vp~~~v~~v~~~~~~~g~~~i~i~~~ 103 (145)
T 2duw_A 71 VDMVDVFRNSEAAWGVAQEAIAIGAKTLWLQLG 103 (145)
T ss_dssp CSEEECCSCSTHHHHHHHHHHHHTCCEEECCTT
T ss_pred CCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 344443344445566666666666677666653
Done!