RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18065
(149 letters)
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane,
glycoprotein, transport, membrane, postsynaptic cell
membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus
norvegicus}
Length = 823
Score = 115 bits (288), Expect = 9e-31
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 11/155 (7%)
Query: 2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPS 61
C Q GV A+FG D + S C L V + + F + + P
Sbjct: 49 VTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP-TDGTHPFVIQMRPD 107
Query: 62 QKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH-------AN 114
L A +I + W K A +Y+ D GL LQ ++ + K ++ +
Sbjct: 108 ---LKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKK 164
Query: 115 PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
TYR++ +++ K+ +I+D ++ V
Sbjct: 165 DETYRSLFQDLELKKERRVILDCERDKVNDIVDQV 199
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus
norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 110 bits (276), Expect = 7e-30
Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 4/153 (2%)
Query: 1 MAEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKE--FSVNL 58
A C QL GV A+FGPS + VQSIC AL VPH+++R +++ + F V+L
Sbjct: 59 EASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSL 118
Query: 59 YPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP--S 116
YP L+ A D+++F W V +VY++ GL +LQEL+K P + IR
Sbjct: 119 YPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTK 178
Query: 117 TYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
+ +L+E+++ + F++I D S + +
Sbjct: 179 DAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQA 211
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION
channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus}
PDB: 3om1_A* 3qlu_A* 3qlv_A
Length = 393
Score = 102 bits (254), Expect = 1e-26
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 5/154 (3%)
Query: 1 MAEATMCRQLQNGVQALFGPSD-ALLGPHVQSICEALDVPHMESRLDLELNSKE---FSV 56
TMC+ L GV ++ GPS V IC ++PH++ + + SV
Sbjct: 58 ETTDTMCQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPRLQYLRFASV 117
Query: 57 NLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPS 116
+LYPS + ++ A +++ N+ +++ + L +L+ELV+ K + +R + S
Sbjct: 118 SLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELVRGFLISKETLSVRMLDDS 177
Query: 117 T-YRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
+L+EIR ++ +IID + + R
Sbjct: 178 RDPTPLLKEIRDDKVSTIIIDANASISHLVLRKA 211
>3o21_A Glutamate receptor 3; periplasmatic binding protein,
oligomerization, membrane, TR protein; HET: NAG; 2.20A
{Rattus norvegicus} PDB: 3p3w_A
Length = 389
Score = 99.9 bits (248), Expect = 6e-26
Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 8/153 (5%)
Query: 1 MAEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYP 60
C Q GV A+FG D + + S C AL + +F + + P
Sbjct: 57 SVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFP-TDADVQFVIQMRP 115
Query: 61 SQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH----ANPS 116
+ A ++ + W K +Y+ + G LQ +++ ++ R +
Sbjct: 116 AL---KGAILSLLSYYKWEKFVYLYDTERGFSVLQAIMEAAVQNNWQVTARSVGNIKDVQ 172
Query: 117 TYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
+R ++ E+ +++ +ID I+ V
Sbjct: 173 EFRRIIEEMDRRQEKRYLIDCEVERINTILEQV 205
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL
membrane, endoplasmic reticulum, glycoprotein, ION TRA
ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus}
PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Length = 376
Score = 99.9 bits (248), Expect = 6e-26
Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 11/155 (7%)
Query: 2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPS 61
C Q GV A+FG D + S C L V + + F + + P
Sbjct: 49 VTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP-TDGTHPFVIQMRPD 107
Query: 62 QKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH-------AN 114
A +I + W K A +Y+ D GL LQ ++ + K ++ +
Sbjct: 108 L---KGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKK 164
Query: 115 PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
TYR++ +++ K+ +I+D ++ V
Sbjct: 165 DETYRSLFQDLELKKERRVILDCERDKVNDIVDQV 199
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 97.5 bits (242), Expect = 5e-25
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 7/149 (4%)
Query: 2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPS 61
C Q GV A+FG + + S C AL V + ++ S +F + L P
Sbjct: 56 MTYRFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVD-TSNQFVLQLRPE 114
Query: 62 QKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPST---Y 118
L A +I W +Y+ D GL LQ ++ T ++ + +T Y
Sbjct: 115 ---LQEALISIIDHYKWQTFVYIYDADRGLSVLQRVLDTAAEKNWQVTAVNILTTTEEGY 171
Query: 119 RNVLREIRQKEIFNLIIDTSTTHISQFFR 147
R + +++ +K+ +++D + ++
Sbjct: 172 RMLFQDLEKKKERLVVVDCESERLNAILG 200
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 74.1 bits (181), Expect = 1e-16
Identities = 12/164 (7%), Positives = 45/164 (27%), Gaps = 16/164 (9%)
Query: 2 AEATMCRQLQN-GVQALFGP---SDALLGPHVQSICEALDVPHME-----SRLDLELNSK 52
+C + + +Q + + + I P + S + + +
Sbjct: 51 IITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDES 110
Query: 53 EFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH 112
PS + + +++ +W +IV G +++ +
Sbjct: 111 SMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELE 170
Query: 113 A-------NPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
+ ++++ + +++ + + F
Sbjct: 171 EVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVA 214
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 73.2 bits (179), Expect = 3e-16
Identities = 24/183 (13%), Positives = 57/183 (31%), Gaps = 35/183 (19%)
Query: 2 AEATMCRQLQN-GVQALF-----GPSDALLGPHVQSICEALDVPHME--SRLDLELNSKE 53
++C L + V A+ P+D L + +P + +R+ + +
Sbjct: 53 MALSVCEDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSI 112
Query: 54 FS--VNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED----NGLFKLQELVK-------- 99
+ P + +++R NW V ++ +D KL+ L++
Sbjct: 113 HLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKK 172
Query: 100 -----TPPTLKTEMYIRHAN--------PSTYRNVLREIRQKEIFNLIIDTSTTHISQFF 146
A+ +L E ++ E +I+ S + +
Sbjct: 173 RNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVY 232
Query: 147 RAV 149
++
Sbjct: 233 KSA 235
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 45.5 bits (107), Expect = 1e-06
Identities = 23/155 (14%), Positives = 49/155 (31%), Gaps = 12/155 (7%)
Query: 6 MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSKE----FSVNLYP 60
+ + GP V + D+P + L K+ + P
Sbjct: 77 VAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAP 136
Query: 61 SQKLLNAAFKDVIRFLNWTKVAIVYEEDN-------GLFKLQELVKTPPTLKTEMYIRHA 113
+ + + R +W++ A+VY +D L + E+ + +
Sbjct: 137 AYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDET 196
Query: 114 NPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA 148
+++R I+ E ++ +S T S A
Sbjct: 197 KDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVA 231
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 44.1 bits (104), Expect = 4e-06
Identities = 14/156 (8%), Positives = 49/156 (31%), Gaps = 7/156 (4%)
Query: 1 MAEATMCRQLQNG--VQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSKEFSVN 57
++ G +FG + + + ++ + + L K+
Sbjct: 71 KGLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPY 130
Query: 58 LY---PSQKLLNAAFKDVIRFLNWTKVAIVYEEDN-GLFKLQELVKTPPTLKTEMYIRHA 113
+ PS +N A +++ W +V + ++ +L E+ +
Sbjct: 131 FFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTES 190
Query: 114 NPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
+ +++++ ++ ++ ++ F
Sbjct: 191 FSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCA 226
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 42.1 bits (98), Expect = 2e-05
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 4/83 (4%)
Query: 11 QNGVQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSKE---FSVNLYPSQKLLN 66
++ GP V VP + L + K+ + PS L
Sbjct: 75 EHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLG 134
Query: 67 AAFKDVIRFLNWTKVAIVYEEDN 89
+ R L W A+V D
Sbjct: 135 DFVTALHRRLGWEHQALVLYADR 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.002
Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 19/94 (20%)
Query: 58 LYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEM-------YI 110
LY + + A +DV W + +++ G F + ++V P T I
Sbjct: 1635 LYKT----SKAAQDV-----WNRADNHFKDTYG-FSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 111 RHA-NPSTYRNVL-REIRQKEIFNLIIDTSTTHI 142
R + + ++ +++ ++IF I + ST++
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Score = 35.8 bits (82), Expect = 0.004
Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 45/158 (28%)
Query: 10 LQNGVQA--LFGPSDAL--LGPHVQSIC--EALD---VPHMESRLDLELNSKEF---SVN 57
L NG + + GP +L L ++ LD +P E +L S F +
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF---SNRFLPVAS- 425
Query: 58 LYP--SQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMY------ 109
P S LL A + + L ++N F +++ + P +Y
Sbjct: 426 --PFHS-HLLVPASDLINKDL---------VKNNVSFNAKDI-QIP------VYDTFDGS 466
Query: 110 -IRHANPSTYRNVLREIRQKEI-FNLIIDTSTTHISQF 145
+R + S ++ I + + + THI F
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 31.2 bits (70), Expect = 0.13
Identities = 26/165 (15%), Positives = 45/165 (27%), Gaps = 58/165 (35%)
Query: 7 CRQLQNGVQA-LFGPSDAL----------------LGPHVQSICEALDVPHMESRLDLEL 49
QLQ L P++ LG +V S+ E V + L+L L
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG-YVSSLVEPSKVGQFDQVLNLCL 88
Query: 50 NSKE-----------FSVNLYPSQKLLNAAFKDVIRF----LNWTKVAIVYEEDNGLFK- 93
E + L K++I+ K + ++ LF+
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 94 ------------------------LQELVKTPPTLKTEMYIRHAN 114
L++L +T L ++ A
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.15
Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 45/138 (32%)
Query: 7 CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESR----LDLELNSKEFSVNLYPSQ 62
C+ +Q+ +++ + + I + S L+ +E V Q
Sbjct: 35 CKDVQDMPKSILSKEE------IDHI---IMSKDAVSGTLRLFWTLLSKQEEMV-----Q 80
Query: 63 KLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPS------ 116
K + + +FL + + E P++ T MYI +
Sbjct: 81 KFVEEVLRINYKFL-MSPIK---TEQRQ-----------PSMMTRMYIEQRDRLYNDNQV 125
Query: 117 -TYRNVLR-----EIRQK 128
NV R ++RQ
Sbjct: 126 FAKYNVSRLQPYLKLRQA 143
Score = 29.8 bits (66), Expect = 0.39
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 32 ICEALDVPHMESRL-DLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE 87
IC+ + P E + + +F + L+ + + D++R + ++EE
Sbjct: 534 ICD--NDPKYERLVNAIL----DFLPK--IEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 26.4 bits (57), Expect = 4.9
Identities = 30/188 (15%), Positives = 54/188 (28%), Gaps = 68/188 (36%)
Query: 9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYP---SQK-- 63
+L N Q +F + + +AL LEL + V + S K
Sbjct: 118 RLYNDNQ-VFAKYNVSRLQPYLKLRQAL----------LELRPAKN-VLIDGVLGSGKTW 165
Query: 64 LLNAAFKD--VIRFLN----WTKVAIVYEEDNGLFKLQELVK-------------TPPTL 104
+ V ++ W + + L LQ+L+ + L
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 105 KTE-------MYIRHANPSTYRN---VLREI-------------------RQKEIFNLII 135
+ ++ Y N VL + R K++ + +
Sbjct: 226 RIHSIQAELRRLLKSKP---YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 136 DTSTTHIS 143
+TTHIS
Sbjct: 283 AATTTHIS 290
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 30.5 bits (69), Expect = 0.17
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 60 PSQKLLNAAFKDVIRFLNWTKVAIVYEEDN-GLFKLQELVKTPPTLK-----TEMYIRHA 113
P A +++RF NWT V+ V E + G ++ + E R
Sbjct: 167 PPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSN 226
Query: 114 NPSTYRNVLREIRQKEIFN-LIIDTSTTHISQFFRAV 149
+Y +V+RE+ QK +++ + + A
Sbjct: 227 IRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAA 263
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 29.8 bits (67), Expect = 0.36
Identities = 13/100 (13%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 60 PSQKLLNAAFKDVIRFLNWTKVAIVYEEDN-GLFKLQELVKTPP---------TLKTEMY 109
P A D+++ L W V+ + E + G ++ + +++
Sbjct: 168 PPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQE 227
Query: 110 IRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
+ R + + + ++I + I Q A
Sbjct: 228 RKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAA 267
>2yim_A Probable alpha-methylacyl-COA racemase MCR (2-methylacyl-COA
racemase) (2-arylpropionyl-COA...; isomerase, methyl-COA
racemase; HET: MC4; 1.41A {Mycobacterium tuberculosis}
PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* 2gci_A*
Length = 360
Score = 28.3 bits (64), Expect = 1.1
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 16 ALFGPSDALLGPHVQSICEALDVPHMESR 44
A+F SDA + P V + E + PH+ R
Sbjct: 289 AVFANSDACVTP-VLAFGEVHNEPHIIER 316
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A
{Mycobacterium tuberculosis}
Length = 359
Score = 27.9 bits (63), Expect = 1.2
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 16 ALFGPSDALLGPHVQSICEALDVPHMESR 44
+F +DA + P V + EA + H+++R
Sbjct: 291 RVFAGTDACVTP-VLAWSEAANNDHLKAR 318
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 27.1 bits (60), Expect = 2.9
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 60 PSQKLLNAAFKDVIRFLNWTKVAIVYEEDN-GLFKLQELVKTPPTLK--------TEMYI 110
P A +++RF NWT V+ V E + G ++ + + E
Sbjct: 168 PPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQ---EARLRNICIATAEKVG 224
Query: 111 RHANPSTYRNVLREIRQKEIFN-LIIDTSTTHISQFFRAV 149
R +Y +V+RE+ QK +++ + + A
Sbjct: 225 RSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAA 264
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor
methylation; HET: SAH; 2.00A {Salmonella typhimurium}
SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Length = 274
Score = 26.4 bits (59), Expect = 4.3
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 116 STYRNVLREIRQKEIFNLIIDTSTTHISQFFR 147
Y ++L + + I+ TT+++ FFR
Sbjct: 57 GRYLSMLEANQNSAEWQAFINALTTNLTAFFR 88
>2odf_A AGR_C_3887P, hypothetical protein ATU2144; structural genomics,
unknown FUNC PSI-2, MCSG, protein structure initiative;
1.90A {Agrobacterium tumefaciens str} SCOP: c.56.5.9
Length = 257
Score = 25.9 bits (56), Expect = 5.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 111 RHANPSTYRNVLREIRQKEI 130
HA P NV+ EIR I
Sbjct: 212 LHALPDGLLNVMIEIRNDLI 231
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 5.9
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 95 QELVKTPPTLKTEMYIRHANPS 116
Q L K +LK +Y + P+
Sbjct: 20 QALKKLQASLK--LYADDSAPA 39
Score = 25.7 bits (55), Expect = 6.2
Identities = 8/23 (34%), Positives = 9/23 (39%), Gaps = 5/23 (21%)
Query: 87 EDNGLFKLQELVK--TP---PTL 104
E L KLQ +K P L
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL 40
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 25.7 bits (57), Expect = 7.1
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 109 YIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQF 145
+ + N + Y + E+ +LII+ + + F
Sbjct: 15 FKGNNNQNKYIERINELVAYRKKSLIIE--FSDVLSF 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.388
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,211,454
Number of extensions: 120205
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 37
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)