BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18066
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 136/290 (46%), Positives = 203/290 (70%), Gaps = 10/290 (3%)
Query: 65 PPSLRSQFNFVADVLENVEKSVVNIELV--IPYYRQTM--SNGSGFIATDDGLIITNAHV 120
P SLR ++NF+ADV+E + +VV+IEL +P+ ++ + ++GSGFI ++DGLI+TNAHV
Sbjct: 6 PNSLRHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 65
Query: 121 VSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFV 180
V+ K ++ V L +G+ ++ ++ +D + D+A+I+ + P L LG+++++R GEFV
Sbjct: 66 VTNK--HRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFV 123
Query: 181 IAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQTDAAITFGNSGGPLVNLDGEV 239
+A+GSP +L NT T GI+S QR + LGL N ++YIQTDA I +GNSGGPLVNLDGEV
Sbjct: 124 VAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEV 183
Query: 240 IGINSMKVTAGISFAIPIDYAIEFLT-NYKRKDKDRTITHKKYIGITMLTLNEKLIEQLR 298
IGIN++KVTAGISFAIP D +FLT ++ R+ K + IT KKYIGI M++L ++L
Sbjct: 184 IGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKEL- 242
Query: 299 RDRHIPY-DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDI 347
+DRH + D+ G I V+ ++PA GL + D+II +N + SA D+
Sbjct: 243 KDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDV 292
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 254 bits (648), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 135/290 (46%), Positives = 203/290 (70%), Gaps = 10/290 (3%)
Query: 65 PPSLRSQFNFVADVLENVEKSVVNIELV--IPYYRQTM--SNGSGFIATDDGLIITNAHV 120
P SLR ++NF+ADV+E + +VV+IEL +P+ ++ + ++GSGFI ++DGLI+TNAHV
Sbjct: 6 PNSLRHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 65
Query: 121 VSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFV 180
V+ K ++ V L +G+ ++ ++ +D + D+A+I+ + P L LG+++++R GEFV
Sbjct: 66 VTNK--HRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFV 123
Query: 181 IAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQTDAAITFGNSGGPLVNLDGEV 239
+A+GSP +L NT T GI+S QR + LGL N ++YIQTDA I +GN+GGPLVNLDGEV
Sbjct: 124 VAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEV 183
Query: 240 IGINSMKVTAGISFAIPIDYAIEFLT-NYKRKDKDRTITHKKYIGITMLTLNEKLIEQLR 298
IGIN++KVTAGISFAIP D +FLT ++ R+ K + IT KKYIGI M++L ++L
Sbjct: 184 IGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKEL- 242
Query: 299 RDRHIPY-DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDI 347
+DRH + D+ G I V+ ++PA GL + D+II +N + SA D+
Sbjct: 243 KDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDV 292
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 249 bits (637), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 200/306 (65%), Gaps = 11/306 (3%)
Query: 71 QFNFVADVLENVEKSVVNIELVI--PYYRQT--MSNGSGFIATDDGLIITNAHVVSGKPG 126
Q+NF+ADV+E +VV IE++ P+ + +SNGSGF+ DGLI+TNAHVV+ +
Sbjct: 13 QYNFIADVVEKTAPAVVYIEILDRHPFLGREVPISNGSGFVVAADGLIVTNAHVVADR-- 70
Query: 127 AQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSP 186
++ V L G ++ V A+D D+A +R P L LG++AD+R GEFV+AMGSP
Sbjct: 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRIQTKEPLPTLPLGRSADVRQGEFVVAMGSP 130
Query: 187 LTLNNTNTFGIISNKQRSSETLGLNKT-INYIQTDAAITFGNSGGPLVNLDGEVIGINSM 245
L NT T GI+S+ QR + LGL +T + YIQTDAAI FGN+GGPLVNLDGEVIG+N+M
Sbjct: 131 FALQNTITSGIVSSAQRPARDLGLPQTNVEYIQTDAAIDFGNAGGPLVNLDGEVIGVNTM 190
Query: 246 KVTAGISFAIPIDYAIEFLTNYKRKDKDRTI--THKKYIGITMLTLNEKLIEQLR-RDRH 302
KVTAGISFAIP D EFL ++K+ I + ++YIG+ MLTL+ ++ +L+ R+
Sbjct: 191 KVTAGISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYIGVMMLTLSPSILAELQLREPS 250
Query: 303 IPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRLVNFQFS 362
P D+ HGVLI +V+ SPA+ AGL D+I+ + ++ +A+D+Y A+ + Q
Sbjct: 251 FP-DVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRTQSQLAVQIR 309
Query: 363 HFKHSF 368
+ +
Sbjct: 310 RGRETL 315
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 159/216 (73%), Gaps = 8/216 (3%)
Query: 65 PPSLRSQFNFVADVLENVEKSVVNIELV--IPYYRQTM--SNGSGFIATDDGLIITNAHV 120
P SLR ++NF+ADV+E + +VV+IEL +P+ ++ + ++GSGFI ++DGLI+TNAHV
Sbjct: 6 PNSLRHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 65
Query: 121 VSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFV 180
V+ K ++ V L +G+ ++ ++ +D + D+A+I+ + P L LG+++++R GEFV
Sbjct: 66 VTNK--HRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFV 123
Query: 181 IAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQTDAAITFGNSGGPLVNLDGEV 239
+A+GSP +L NT T GI+S QR + LGL N ++YIQTDA I +GNSGGPLVNLDGEV
Sbjct: 124 VAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEV 183
Query: 240 IGINSMKVTAGISFAIPIDYAIEFLT-NYKRKDKDR 274
IGIN++KVTAGISFAIP D +FLT ++ R+ K +
Sbjct: 184 IGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGK 219
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 204 bits (520), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 153/206 (74%), Gaps = 7/206 (3%)
Query: 65 PPSLRSQFNFVADVLENVEKSVVNIELV--IPYYRQTM--SNGSGFIATDDGLIITNAHV 120
P SLR ++NF+ADV+E + +VV+IEL +P+ ++ + ++GSGFI ++DGLI+TNAHV
Sbjct: 23 PNSLRHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 82
Query: 121 VSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFV 180
V+ K ++ V L +G+ ++ ++ +D + D+A+I+ + P L LG+++++R GEFV
Sbjct: 83 VTNK--HRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFV 140
Query: 181 IAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQTDAAITFGNSGGPLVNLDGEV 239
+A+GSP +L NT T GI+S QR + LGL N ++YIQTDA I +GNSGGPLVNLDGEV
Sbjct: 141 VAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEV 200
Query: 240 IGINSMKVTAGISFAIPIDYAIEFLT 265
IGIN++KVTAGISFAIP D +FLT
Sbjct: 201 IGINTLKVTAGISFAIPSDKIKKFLT 226
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 204 bits (518), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 153/206 (74%), Gaps = 7/206 (3%)
Query: 65 PPSLRSQFNFVADVLENVEKSVVNIELV--IPYYRQTM--SNGSGFIATDDGLIITNAHV 120
P SLR ++NF+ADV+E + +VV+IEL +P+ ++ + ++GSGFI ++DGLI+TNAHV
Sbjct: 23 PNSLRHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 82
Query: 121 VSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFV 180
V+ K ++ V L +G+ ++ ++ +D + D+A+I+ + P L LG+++++R GEFV
Sbjct: 83 VTNK--HRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFV 140
Query: 181 IAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQTDAAITFGNSGGPLVNLDGEV 239
+A+GSP +L NT T GI+S QR + LGL N ++YIQTDA I +GN+GGPLVNLDGEV
Sbjct: 141 VAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEV 200
Query: 240 IGINSMKVTAGISFAIPIDYAIEFLT 265
IGIN++KVTAGISFAIP D +FLT
Sbjct: 201 IGINTLKVTAGISFAIPSDKIKKFLT 226
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 148/276 (53%), Gaps = 35/276 (12%)
Query: 97 RQTMSNGSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAII 155
R+ S GSG I ++G+IITN HV+ + + I VTL DG + K + D E DLA++
Sbjct: 73 RKFESIGSGVIIDPNNGVIITNDHVI--RNASLITVTLQDGRRLKARLIGGDSETDLAVL 130
Query: 156 RCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNN-----TNTFGIISNKQRSSETLGL 210
+ + N +L +G + + G+FV+A+G+P LN+ + TFGI+S +RS L +
Sbjct: 131 KIDA-KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSD--LNI 187
Query: 211 NKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLT 265
N+IQTDAAI GNSGG LVN GE+IGIN+ ++ GI FAIPI+
Sbjct: 188 EGVENFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV----- 242
Query: 266 NYKRKDKDRTI-----THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNS 320
KD + I H+ +GI + + L +L + P D G L+ +V NS
Sbjct: 243 ----KDVAQQIIKFGSIHRGLMGIFV----QHLTPELAQAMGYPEDF-QGALVSQVNPNS 293
Query: 321 PAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRL 356
PA LAGL DII ++N A + + ++R+
Sbjct: 294 PAELAGLKAGDIITQINDTKITQATQVKTTISLLRV 329
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 304 PYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDI 347
P+ GV + NS + AG+ DIII NKKP K +
Sbjct: 381 PHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSL 424
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 148/276 (53%), Gaps = 35/276 (12%)
Query: 97 RQTMSNGSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAII 155
R+ S GSG I ++G+IITN HV+ + + I VTL DG + K + D E DLA++
Sbjct: 73 RKFESIGSGVIIDPNNGVIITNDHVI--RNASLITVTLQDGRRLKARLIGGDSETDLAVL 130
Query: 156 RCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNN-----TNTFGIISNKQRSSETLGL 210
+ + N +L +G + + G+FV+A+G+P LN+ + TFGI+S +RS L +
Sbjct: 131 KIDA-KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSD--LNI 187
Query: 211 NKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLT 265
N+IQTDAAI GNSGG LVN GE+IGIN+ ++ GI FAIPI+
Sbjct: 188 EGVENFIQTDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV----- 242
Query: 266 NYKRKDKDRTI-----THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNS 320
KD + I H+ +GI + + L +L + P D G L+ +V NS
Sbjct: 243 ----KDVAQQIIKFGSIHRGLMGIFV----QHLTPELAQAMGYPEDF-QGALVSQVNPNS 293
Query: 321 PAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRL 356
PA LAGL DII ++N A + + ++R+
Sbjct: 294 PAELAGLKAGDIITQINDTKITQATQVKTTISLLRV 329
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 304 PYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDI 347
P+ GV + NS + AG+ DIII NKKP K +
Sbjct: 381 PHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSL 424
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 148/276 (53%), Gaps = 35/276 (12%)
Query: 97 RQTMSNGSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAII 155
R+ S GSG I ++G+IITN HV+ + + I VTL DG + K + D E DLA++
Sbjct: 73 RKFESIGSGVIIDPNNGVIITNDHVI--RNASLITVTLQDGRRLKARLIGGDSETDLAVL 130
Query: 156 RCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNN-----TNTFGIISNKQRSSETLGL 210
+ + N +L +G + + G+FV+A+G+P LN+ + TFGI+S +RS L +
Sbjct: 131 KIDA-KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSD--LNI 187
Query: 211 NKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLT 265
N+IQTDAAI GNSGG LVN GE+IGIN+ ++ GI FAIPI+
Sbjct: 188 EGVENFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV----- 242
Query: 266 NYKRKDKDRTI-----THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNS 320
KD + I H+ +GI + + L +L + P D G L+ +V NS
Sbjct: 243 ----KDVAQQIIKFGSIHRGLMGIFV----QHLTPELAQAMGYPEDF-QGALVSQVNPNS 293
Query: 321 PAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRL 356
PA LAGL DII ++N A + + ++R+
Sbjct: 294 PAELAGLKAGDIITQINDTKITQATQVKTTISLLRV 329
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 133/262 (50%), Gaps = 28/262 (10%)
Query: 100 MSNGSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCN 158
M+ GSG I D G ++TN HVV I V L DG K + D D+A+I+
Sbjct: 85 MALGSGVIIDADKGYVVTNNHVVDN--ATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQ 142
Query: 159 FPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INY 216
P N A+K+ + +R G++ +A+G+P L T T GI+S RS GLN N+
Sbjct: 143 NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENF 198
Query: 217 IQTDAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKD 271
IQTDAAI GNSGG LVNL+GE+IGIN+ + GI FAIP + + N +
Sbjct: 199 IQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQM 254
Query: 272 KDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQED 331
+ + +GI LN +L + ++ D G + +V+ NS A AG+ D
Sbjct: 255 VEYGQVKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGD 308
Query: 332 IIIELNKKPCHSAKDIYAALEV 353
+I LN KP S +AAL
Sbjct: 309 VITSLNGKPISS----FAALRA 326
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 148/276 (53%), Gaps = 35/276 (12%)
Query: 97 RQTMSNGSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAII 155
R+ S GSG I ++G+IITN HV+ + + I VTL DG + K + D E DLA++
Sbjct: 73 RKFESIGSGVIIDPNNGVIITNDHVI--RNASLITVTLQDGRRLKARLIGGDSETDLAVL 130
Query: 156 RCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNN-----TNTFGIISNKQRSSETLGL 210
+ + N +L +G + + G+FV+A+G+P LN+ + TFGI+S +RS L +
Sbjct: 131 KIDA-KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSD--LNI 187
Query: 211 NKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLT 265
N+IQTDAAI GN+GG LVN GE+IGIN+ ++ GI FAIPI+
Sbjct: 188 EGVENFIQTDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV----- 242
Query: 266 NYKRKDKDRTI-----THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNS 320
KD + I H+ +GI + + L +L + P D G L+ +V NS
Sbjct: 243 ----KDVAQQIIKFGSIHRGLMGIFV----QHLTPELAQAMGYPEDF-QGALVSQVNPNS 293
Query: 321 PAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRL 356
PA LAGL DII ++N A + + ++R+
Sbjct: 294 PAELAGLKAGDIITQINDTKITQATQVKTTISLLRV 329
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 304 PYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDI 347
P+ GV + NS + AG+ DIII NKKP K +
Sbjct: 381 PHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSL 424
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 133/260 (51%), Gaps = 28/260 (10%)
Query: 100 MSNGSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCN 158
M+ GSG I D G ++TN HVV I V L DG K + D D+A+I+
Sbjct: 85 MALGSGVIIDADKGYVVTNNHVVDN--ATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQ 142
Query: 159 FPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INY 216
P N A+K+ + +R G++ +A+G+P L T T GI+S RS GLN N+
Sbjct: 143 NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENF 198
Query: 217 IQTDAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKD 271
IQTDAAI GNSGG LVNL+GE+IGIN+ + GI FAIP + + N +
Sbjct: 199 IQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQM 254
Query: 272 KDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQED 331
+ + +GI LN +L + ++ D G + +V+ NS A AG+ D
Sbjct: 255 VEYGQVKRGELGIMGTELNSELAKAMKVDAQ------RGAFVSQVLPNSSAAKAGIKAGD 308
Query: 332 IIIELNKKPCHSAKDIYAAL 351
+I LN KP S +AAL
Sbjct: 309 VITSLNGKPISS----FAAL 324
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 133/260 (51%), Gaps = 28/260 (10%)
Query: 100 MSNGSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCN 158
M+ GSG I D G ++TN HVV I V L DG K + D D+A+I+
Sbjct: 85 MALGSGVIIDADKGYVVTNNHVVDN--ATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQ 142
Query: 159 FPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INY 216
P N A+K+ + +R G++ +A+G+P L T T GI+S RS GLN N+
Sbjct: 143 NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENF 198
Query: 217 IQTDAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKD 271
IQTDAAI GN+GG LVNL+GE+IGIN+ + GI FAIP + + N +
Sbjct: 199 IQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQM 254
Query: 272 KDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQED 331
+ + +GI LN +L + ++ D G + +V+ NS A AG+ D
Sbjct: 255 VEYGQVKRGELGIMGTELNSELAKAMKVDAQ------RGAFVSQVLPNSSAAKAGIKAGD 308
Query: 332 IIIELNKKPCHSAKDIYAAL 351
+I LN KP S +AAL
Sbjct: 309 VITSLNGKPISS----FAAL 324
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 133/260 (51%), Gaps = 28/260 (10%)
Query: 100 MSNGSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCN 158
M+ GSG I D G ++TN HVV I V L DG K + D D+A+I+
Sbjct: 85 MALGSGVIIDADKGYVVTNNHVVDN--ATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQ 142
Query: 159 FPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INY 216
P N A+K+ + +R G++ +A+G+P L T T GI+S RS GLN N+
Sbjct: 143 NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENF 198
Query: 217 IQTDAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKD 271
IQTDAAI GN+GG LVNL+GE+IGIN+ + GI FAIP + + N +
Sbjct: 199 IQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQM 254
Query: 272 KDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQED 331
+ + +GI LN +L + ++ D G + +V+ NS A AG+ D
Sbjct: 255 VEYGQVKRGELGIMGTELNSELAKAMKVDAQ------RGAFVSQVLPNSSAAKAGIKAGD 308
Query: 332 IIIELNKKPCHSAKDIYAAL 351
+I LN KP S +AAL
Sbjct: 309 VITSLNGKPISS----FAAL 324
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 133/262 (50%), Gaps = 28/262 (10%)
Query: 100 MSNGSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCN 158
M+ GSG I D G ++TN HVV I V L DG K + D D+A+I+
Sbjct: 85 MALGSGVIIDADKGYVVTNNHVVDN--ATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQ 142
Query: 159 FPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INY 216
P N A+K+ + +R G++ +A+G+P L T T GI+S RS GLN N+
Sbjct: 143 NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENF 198
Query: 217 IQTDAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKD 271
IQTDAAI GN+GG LVNL+GE+IGIN+ + GI FAIP + + N +
Sbjct: 199 IQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQM 254
Query: 272 KDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQED 331
+ + +GI LN +L + ++ D G + +V+ NS A AG+ D
Sbjct: 255 VEYGQVKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGD 308
Query: 332 IIIELNKKPCHSAKDIYAALEV 353
+I LN KP S +AAL
Sbjct: 309 VITSLNGKPISS----FAALRA 326
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 128/259 (49%), Gaps = 28/259 (10%)
Query: 103 GSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPN 161
GSG I D G ++TN HVV I V L DG K D D+A+I+ P
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNA--TVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPK 145
Query: 162 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQT 219
N A+K + +R G++ +A+G+P L T T GI+S RS GLN N+IQT
Sbjct: 146 NLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFIQT 201
Query: 220 DAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDKDR 274
DAAI GNSGG LVNL+GE+IGIN+ + GI FAIP + + N + +
Sbjct: 202 DAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNX----VKNLTSQXVEY 257
Query: 275 TITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIII 334
+ +GI LN +L + + D G + +V+ NS A AG+ D+I
Sbjct: 258 GQVKRGELGIXGTELNSELAKAXK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVIT 311
Query: 335 ELNKKPCHSAKDIYAALEV 353
LN KP S +AAL
Sbjct: 312 SLNGKPISS----FAALRA 326
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 128/259 (49%), Gaps = 28/259 (10%)
Query: 103 GSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPN 161
GSG I D G ++TN HVV I V L DG K D D+A+I+ P
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNA--TVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPK 145
Query: 162 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQT 219
N A+K + +R G++ +A+G+P L T T GI+S RS GLN N+IQT
Sbjct: 146 NLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFIQT 201
Query: 220 DAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDKDR 274
DAAI GN+GG LVNL+GE+IGIN+ + GI FAIP + + N + +
Sbjct: 202 DAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNX----VKNLTSQXVEY 257
Query: 275 TITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIII 334
+ +GI LN +L + + D G + +V+ NS A AG+ D+I
Sbjct: 258 GQVKRGELGIXGTELNSELAKAXK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVIT 311
Query: 335 ELNKKPCHSAKDIYAALEV 353
LN KP S +AAL
Sbjct: 312 SLNGKPISS----FAALRA 326
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 130/250 (52%), Gaps = 18/250 (7%)
Query: 41 HQWPLINVILPSIDAAQRIDIDYKPPSLRSQFNFVADVLENVEKSVVNIELVIPYYRQTM 100
++ P++NV+ A +ID+ + +F E K EL + RQ
Sbjct: 2 YESPIVNVVEACAPAVVKIDV-----VKTVKTSFFDPYFEQFFKKWFG-ELPPGFERQVA 55
Query: 101 SNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFP 160
S GSGFI +G I+TN HVV G I VT+ DGSK+ D E D+A+I+
Sbjct: 56 SLGSGFIFDPEGYILTNYHVVGG--ADNITVTMLDGSKYDAEYIGGDEELDIAVIKIKAS 113
Query: 161 NN-YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIIS-NKQRSSETLGLNKTINYIQ 218
+ +P L+ G + ++ GE+ IA+G+PL +T T G++S +R + G + IQ
Sbjct: 114 DKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYVGLIQ 173
Query: 219 TDAAITFGNSGGPLVNLDGEVIGINSMKV----TAGISFAIPIDYAIEFLTNYKRKDKDR 274
TDAAI GNSGGPL+N+ GEVIGIN+ V + FAIPI+ +FL + K
Sbjct: 174 TDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTILTQKK-- 231
Query: 275 TITHKKYIGI 284
K Y+G+
Sbjct: 232 --VEKAYLGV 239
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 128/259 (49%), Gaps = 28/259 (10%)
Query: 103 GSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPN 161
GSG I D G ++TN HVV I V L DG K D D+A+I+ P
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNA--TVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPK 145
Query: 162 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQT 219
N A+K + +R G++ +A+G+P L T T GI+S RS GLN N+IQT
Sbjct: 146 NLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFIQT 201
Query: 220 DAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDKDR 274
DAAI GN+GG LVNL+GE+IGIN+ + GI FAIP + + N + +
Sbjct: 202 DAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNX----VKNLTSQXVEY 257
Query: 275 TITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIII 334
+ +GI LN +L + + D G + +V+ NS A AG+ D+I
Sbjct: 258 GQVKRGELGIXGTELNSELAKAXK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVIT 311
Query: 335 ELNKKPCHSAKDIYAALEV 353
LN KP S +AAL
Sbjct: 312 SLNGKPISS----FAALRA 326
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 127/263 (48%), Gaps = 26/263 (9%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 39 GSGVIMDQRGYIITNKHVINDA--DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 96
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++QTD
Sbjct: 97 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTD 152
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GNSGG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 153 ASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 212
Query: 273 DRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDI 332
+ YIGI + I L D G+++ V + PA AG+ D+
Sbjct: 213 ----VIRGYIGI-----GGREIAPLHAQGG-GIDQLQGIVVNEVSPDGPAANAGIQVNDL 262
Query: 333 IIELNKKPCHSAKDIYAALEVVR 355
II ++ KP SA + + +R
Sbjct: 263 IISVDNKPAISALETMDQVAEIR 285
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 128/268 (47%), Gaps = 36/268 (13%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 65 GSGVIMDQRGYIITNKHVINDA--DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 122
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++QTD
Sbjct: 123 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTD 178
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GN GG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 179 ASINPGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
Query: 273 DRTITHKKYIG-----ITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGL 327
+ YIG I L I+QL G+++ V + PA AG+
Sbjct: 239 ----VIRGYIGIGGREIAPLHAQGGGIDQL-----------QGIVVNEVSPDGPAANAGI 283
Query: 328 HQEDIIIELNKKPCHSAKDIYAALEVVR 355
D+II ++ KP SA + A + +R
Sbjct: 284 QVNDLIISVDNKPAISALETMAQVAEIR 311
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 132/273 (48%), Gaps = 42/273 (15%)
Query: 75 VADVLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVS-------GKPGA 127
V V V SVV +E + RQ+ GSG I + +GLI+TN HV++ G P
Sbjct: 8 VEQVAAKVVPSVVXLETDL--GRQS-EEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPP 64
Query: 128 QIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPL 187
+ VT DG V D D+A++R + + LG ++D+R G+ V+A+GSPL
Sbjct: 65 KTTVTFSDGRTAPFTVVGADPTSDIAVVRVQGVSGLTPISLGSSSDLRVGQPVLAIGSPL 124
Query: 188 TLNNTNTFGIISNKQRSSETLG----LNKTINYIQTDAAITFGNSGGPLVNLDGEVIGIN 243
L T T GI+S R T G N ++ IQTDAAI GNSGG LVN + +++G+N
Sbjct: 125 GLEGTVTTGIVSALNRPVSTTGEAGNQNTVLDAIQTDAAINPGNSGGALVNXNAQLVGVN 184
Query: 244 SMKVTA------------GISFAIPIDYAIEFLTNYKRKDKDRTITHKKY----IGITML 287
S T G+ FAIP+D A ++ D I+ K +G+ +
Sbjct: 185 SAIATLGADSADAQSGSIGLGFAIPVDQA--------KRIADELISTGKASHASLGVQVT 236
Query: 288 ----TLNEKLIEQLRRDRHIPYDLTHGVLIWRV 316
TL K++E + + GV++ +V
Sbjct: 237 NDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKV 269
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 127/268 (47%), Gaps = 36/268 (13%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 39 GSGVIXDQRGYIITNKHVINDA--DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 96
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++QTD
Sbjct: 97 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTD 152
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GNSGG LVN GE+ GIN++ + GI FAIP A + R +
Sbjct: 153 ASINHGNSGGALVNSLGELXGINTLSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRDGR 212
Query: 273 DRTITHKKYIG-----ITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGL 327
+ YIG I L I+QL+ G+++ V + PA AG+
Sbjct: 213 ----VIRGYIGIGGREIAPLHAQGGGIDQLQ-----------GIVVNEVSPDGPAANAGI 257
Query: 328 HQEDIIIELNKKPCHSAKDIYAALEVVR 355
D+II ++ KP SA + + +R
Sbjct: 258 QVNDLIISVDNKPAISALETXDQVAEIR 285
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 133/275 (48%), Gaps = 35/275 (12%)
Query: 100 MSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNF 159
+GSGF+ G I+TN HV+ G + + VTL D + V D + D+A++R +
Sbjct: 52 QGSGSGFVWDKQGHIVTNYHVIRGA--SDLRVTLADQTTFDAKVVGFDQDKDVAVLRIDA 109
Query: 160 PNN-YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTI-NYI 217
P N + +G +AD+ G+ V A+G+P L++T T G+IS +R + + I + I
Sbjct: 110 PKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVI 169
Query: 218 QTDAAITFGNSGGPLVNLDGEVIGINSM-----KVTAGISFAIPIDYAIEFLTNYKRKDK 272
QTDAAI GNSGGPL++ G +IGIN+ ++G+ F+IP+D + R K
Sbjct: 170 QTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGK 229
Query: 273 DRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQE-- 330
+ +GI ++ +EQL GVL+ + PA AGL
Sbjct: 230 ----VTRPILGIKFAP--DQSVEQLG---------VSGVLVLDAPPSGPAGKAGLQSTKR 274
Query: 331 ---------DIIIELNKKPCHSAKDIYAALEVVRL 356
DII +N + D+Y L+ ++
Sbjct: 275 DGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKV 309
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 124/247 (50%), Gaps = 20/247 (8%)
Query: 103 GSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPN 161
GSG I G ++TN HV++ +I + L DG + + D + D+A+++ P+
Sbjct: 65 GSGVIINASKGYVLTNNHVIN--QAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPS 122
Query: 162 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDA 221
+ + + +R G+F +A+G+P L T T GI+S RS L L N+IQTDA
Sbjct: 123 KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSG--LNLEGLENFIQTDA 180
Query: 222 AITFGNSGGPLVNLDGEVIGINSMKV-----TAGISFAIPIDYAIEFLTNYKRKDKDRTI 276
+I GNSGG L+NL+GE+IGIN+ + + GI FAIP + A ++ D
Sbjct: 181 SINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMA----RTLAQQLIDFGE 236
Query: 277 THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIEL 336
+ +GI ++ + + D+ G + V+ S + AG+ DII L
Sbjct: 237 IKRGLLGIKGTEMSADIAKAFN------LDVQRGAFVSEVLPGSGSAKAGVKAGDIITSL 290
Query: 337 NKKPCHS 343
N KP +S
Sbjct: 291 NGKPLNS 297
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 127/268 (47%), Gaps = 36/268 (13%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA++
Sbjct: 44 GSGVIMDQRGYIITNKHVINDAD--QIIVALQDGRVFEALLVGSDSLTDLAVLIIKATGG 101
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++QTD
Sbjct: 102 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTD 157
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GNSGG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 158 ASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 217
Query: 273 DRTITHKKYIG-----ITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGL 327
+ YIG I L I+QL+ G+++ V + PA AG+
Sbjct: 218 ----VIRGYIGIGGREIAPLHAQGGGIDQLQ-----------GIVVNEVSPDGPAANAGI 262
Query: 328 HQEDIIIELNKKPCHSAKDIYAALEVVR 355
D+II ++ KP SA + + +R
Sbjct: 263 QVNDLIISVDNKPAISALETMDQVAEIR 290
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 124/247 (50%), Gaps = 20/247 (8%)
Query: 103 GSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPN 161
GSG I G ++TN HV++ +I + L DG + + D + D+A+++ P+
Sbjct: 65 GSGVIINASKGYVLTNNHVIN--QAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPS 122
Query: 162 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDA 221
+ + + +R G+F +A+G+P L T T GI+S RS L L N+IQTDA
Sbjct: 123 KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSG--LNLEGLENFIQTDA 180
Query: 222 AITFGNSGGPLVNLDGEVIGINSMKV-----TAGISFAIPIDYAIEFLTNYKRKDKDRTI 276
+I GN+GG L+NL+GE+IGIN+ + + GI FAIP + A ++ D
Sbjct: 181 SINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMA----RTLAQQLIDFGE 236
Query: 277 THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIEL 336
+ +GI ++ + + D+ G + V+ S + AG+ DII L
Sbjct: 237 IKRGLLGIKGTEMSADIAKAFN------LDVQRGAFVSEVLPGSGSAKAGVKAGDIITSL 290
Query: 337 NKKPCHS 343
N KP +S
Sbjct: 291 NGKPLNS 297
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHS---------AKDIYAALEVVR 355
D G+ I V+ SPA AGL ++D+II +N+ +S AK AL++VR
Sbjct: 360 DGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKPAIIALQIVR 418
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 55 GSGVIMDQRGYIITNKHVIN--DADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 112
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++QTD
Sbjct: 113 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTD 168
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GNSGG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 169 ASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 228
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 67 GSGVIMDQRGYIITNKHVIN--DADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 124
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++QTD
Sbjct: 125 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTD 180
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GNSGG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 181 ASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 240
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 65 GSGVIMDQRGYIITNKHVIN--DADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 122
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++QTD
Sbjct: 123 LPTIPINARRVPHIGDVVLAIGNPANLGQTITQGIISATGR----IGLNPTGRQNFLQTD 178
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GNSGG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 179 ASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 94/180 (52%), Gaps = 16/180 (8%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 67 GSGVIMDQRGYIITNKHVINDAD--QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 124
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS ++ +GLN T N++QTD
Sbjct: 125 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS----ATGAIGLNPTGRQNFLQTD 180
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GNSGG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 181 ASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 240
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 94/180 (52%), Gaps = 16/180 (8%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 65 GSGVIMDQRGYIITNKHVINDAD--QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 122
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS ++ +GLN T N++QTD
Sbjct: 123 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS----ATGAIGLNPTGRQNFLQTD 178
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GNSGG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 179 ASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 92/177 (51%), Gaps = 16/177 (9%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 39 GSGVIMDQRGYIITNKHVINDAD--QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 96
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++QTD
Sbjct: 97 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTD 152
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKR 269
A+I GNSGG LVN GE++GIN++ + GI FAIP A + + R
Sbjct: 153 ASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIR 209
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 65 GSGVIMDQRGYIITNKHVINDA--DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 122
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++QTD
Sbjct: 123 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTD 178
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GNSGG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 179 ASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 65 GSGVIMDQRGYIITNKHVINDA--DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 122
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++QTD
Sbjct: 123 LPTIPINARRVPHIGDVVLAIGNPANLGQTITQGIISATGR----IGLNPTGRQNFLQTD 178
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GNSGG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 179 ASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 67 GSGVIMDQRGYIITNKHVIN--DADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 124
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++QTD
Sbjct: 125 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTD 180
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GN GG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 181 ASINHGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 240
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 65 GSGVIMDQRGYIITNKHVIN--DADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 122
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++QTD
Sbjct: 123 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTD 178
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GN GG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 179 ASINHGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 10/164 (6%)
Query: 103 GSG-FIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPN 161
GSG I G ++TN HV++ +I + L DG + + D + D+A+++ P+
Sbjct: 65 GSGVIINASKGYVLTNNHVIN--QAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPS 122
Query: 162 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDA 221
+ + + +R G+F +A+G+P L T T GI+S RS L L N+IQTDA
Sbjct: 123 KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSG--LNLEGLENFIQTDA 180
Query: 222 AITFGNSGGPLVNLDGEVIGINSMKV-----TAGISFAIPIDYA 260
+I GNSGG L+NL+GE+IGIN+ + + GI FAIP + A
Sbjct: 181 SINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMA 224
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 91/180 (50%), Gaps = 16/180 (8%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 67 GSGVIXDQRGYIITNKHVIN--DADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 124
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++QTD
Sbjct: 125 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTD 180
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GNSGG LVN GE+ GIN++ + GI FAIP A + R +
Sbjct: 181 ASINHGNSGGALVNSLGELXGINTLSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRDGR 240
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 67 GSGVIMDQRGYIITNKHVINDAD--QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 124
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++ TD
Sbjct: 125 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLATD 180
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GNSGG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 181 ASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 240
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 65 GSGVIMDQRGYIITNKHVIN--DADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 122
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T T GIIS R +GLN T N++ TD
Sbjct: 123 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLATD 178
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GNSGG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 179 ASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNN 162
GSG I G IITN HV++ QIIV L DG + + D DLA+++ N
Sbjct: 65 GSGVIMDQRGYIITNKHVINDA--DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 122
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTD 220
P + + G+ V+A+G+P L T GIIS R +GLN T N++QTD
Sbjct: 123 LPTIPINARRVPHIGDVVLAIGNPYNLGQVITQGIISATGR----IGLNPTGRQNFLQTD 178
Query: 221 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDK 272
A+I GNSGG LVN GE++GIN++ + GI FAIP A + + R +
Sbjct: 179 ASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 26/251 (10%)
Query: 97 RQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIR 156
RQ S GS F+ DG ++TNAH V ++ D K+ V V+CD+A++
Sbjct: 70 RQFTSTGSAFM-IGDGKLLTNAHCVEHDTQVKV-KRRGDDRKYVAKVLVRGVDCDIALLS 127
Query: 157 C---NFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTN-TFGIISNKQRSSETLGLNK 212
+F L+LG +++ V +G PL + + T G++S + +S G +
Sbjct: 128 VESEDFWKGAEPLRLGHLPRLQDS--VTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSSD 185
Query: 213 TINYIQTDAAITFGNSGGPLVNLDGEVIGIN----SMKVTAGISFAIPIDYAIEFLTNYK 268
+ IQ DAAI GNSGGP N GE IG+ + T I + IP FLT+Y+
Sbjct: 186 LLG-IQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYE 244
Query: 269 RKDKDRTITHKKYIGITMLTLNEKLIEQ--LRRDRHIPYDLTHGVLIWRVMYNSPAYLAG 326
R + KY G L + + +E LR +P + GVL+ RV S A
Sbjct: 245 R--------NGKYTGYPCLGVLLQKLENPALRECLKVPTN--EGVLVRRVEPTSDASKV- 293
Query: 327 LHQEDIIIELN 337
L + D+I+ +
Sbjct: 294 LKEGDVIVSFD 304
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 279 KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELN 337
++YIG+ MLTL+ ++ +L+ R+ P D+ HGVLI +V+ SPA+ AGL D+I+ +
Sbjct: 5 RRYIGVMMLTLSPSILAELQLREPSFP-DVQHGVLIHKVILGSPAHRAGLRPGDVILAIG 63
Query: 338 KKPCHSAKDIYAAL 351
++ +A+D+Y A+
Sbjct: 64 EQMVQNAEDVYEAV 77
>pdb|2YTW|A Chain A, Solution Structure Of The Pdz-Domain Of Human Protease
Htra 1 Precursor
Length = 118
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 269 RKDKDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPY-DLTHGVLIWRVMYNSPAYLAGL 327
R+ K + IT KKYIGI M++L ++L +DRH + D+ G I V+ ++PA GL
Sbjct: 8 RQAKGKAITKKKYIGIRMMSLTSSKAKEL-KDRHRDFPDVISGAYIIEVIPDTPAEAGGL 66
Query: 328 HQEDIIIELNKKPCHSAKDIYAALEVVRLVNFQFSHFKHSFLV 370
+ D+II +N + SA D+ ++ +N ++
Sbjct: 67 KENDVIISINGQSVVSANDVSDVIKRESTLNMVVRRGNEDIMI 109
>pdb|2JOA|A Chain A, Htra1 Bound To An Optimized Peptide: Nmr Assignment Of Pdz
Domain And Ligand Resonances
Length = 105
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 279 KKYIGITMLTLNEKLIEQLRRDRHIPY-DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELN 337
KKYIGI M++L ++L +DRH + D+ G I V+ ++PA GL + D+II +N
Sbjct: 5 KKYIGIRMMSLTSSKAKEL-KDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISIN 63
Query: 338 KKPCHSAKDIYAALEVVRLVNFQFSHFKHSFLV 370
+ SA D+ ++ +N ++
Sbjct: 64 GQSVVSANDVSDVIKRESTLNMVVRRGNEDIMI 96
>pdb|2L97|A Chain A, Solution Structure Of Htra Pdz Domain From Streptococcus
Pneumoniae
Length = 134
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 250 GISFAIPIDYAIEFLTNYKRKDKDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTH 309
G+ FAIP + AI + ++ K + +GI M+ L+ +RR +IP ++T
Sbjct: 3 GLGFAIPANDAINIIEQLEKNGK----VTRPALGIQMVNLSNVSTSDIRR-LNIPSNVTS 57
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAAL 351
GV++ V N PA L + D+I +++ K S+ D+ +AL
Sbjct: 58 GVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIASSTDLQSAL 98
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 17/172 (9%)
Query: 78 VLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGS 137
V+ E SVV I + P ++ + G+GF+ + D ++TNAHVV+G VT+ G
Sbjct: 36 VVAATEPSVVKIRSLAPRCQKVL-EGTGFVISPD-RVMTNAHVVAGSNN----VTVYAGD 89
Query: 138 KH-KGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFG 196
K + V + D D+AI+ P + + A + G V+ +G P N T T
Sbjct: 90 KPFEATVVSYDPSVDVAILAVPHLPPPPLVFAAEPA--KTGADVVVLGYPGGGNFTATPA 147
Query: 197 IISNKQRSS------ETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGI 242
I R S + + + + I+ D + G+SGGPL++L+G+V+G+
Sbjct: 148 RIREAIRLSGPDIYGDPEPVTRDVYTIRAD--VEQGDSGGPLIDLNGQVLGV 197
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 17/172 (9%)
Query: 78 VLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGS 137
V+ E SVV I + P ++ + G+GF+ + D ++TNAHVV+G VT+ G
Sbjct: 18 VVAATEPSVVKIRSLAPRCQKVL-EGTGFVISPD-RVMTNAHVVAGSNN----VTVYAGD 71
Query: 138 KH-KGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFG 196
K + V + D D+AI+ P + + A + G V+ +G P N T T
Sbjct: 72 KPFEATVVSYDPSVDVAILAVPHLPPPPLVFAAEPA--KTGADVVVLGYPGGGNFTATPA 129
Query: 197 IISNKQRSS------ETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGI 242
I R S + + + + I+ D + G+SGGPL++L+G+V+G+
Sbjct: 130 RIREAIRLSGPDIYGDPEPVTRDVYTIRAD--VEQGDSGGPLIDLNGQVLGV 179
>pdb|3LT3|A Chain A, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
pdb|3LT3|B Chain B, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
Length = 217
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 17/172 (9%)
Query: 78 VLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGS 137
V+ E SVV I + P ++ + G+GF+ + D ++TNAHVV+G VT+ G
Sbjct: 16 VVAATEPSVVKIRSLAPRCQKVL-EGTGFVISPD-RVMTNAHVVAGSNN----VTVYAGD 69
Query: 138 KH-KGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFG 196
K + V + D D+AI+ P + + A + G V+ +G P N T T
Sbjct: 70 KPFEATVVSYDPSVDVAILAVPHLPPPPLVFAAEPA--KTGADVVVLGYPGGGNFTATPA 127
Query: 197 IISNKQRSS------ETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGI 242
I R S + + + + I+ D + G++GGPL++L+G+V+G+
Sbjct: 128 RIREAIRLSGPDIYGDPEPVTRDVYTIRAD--VEQGDAGGPLIDLNGQVLGV 177
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 42/73 (57%)
Query: 279 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNK 338
K++IGI M T+ L+++L+ +++ G+ + V NSP+ G+ DII+++N
Sbjct: 5 KRFIGIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNG 64
Query: 339 KPCHSAKDIYAAL 351
+P + ++ A+
Sbjct: 65 RPLVDSSELQEAV 77
>pdb|2AS9|A Chain A, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
pdb|2AS9|B Chain B, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
Length = 210
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 32/164 (19%)
Query: 99 TMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDV------ECDL 152
+ + +GF+ + IITN HV I P+G K G + + + D+
Sbjct: 21 SFKDATGFVIGKN-TIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDI 79
Query: 153 AIIRC------------NFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISN 200
+++ NF N A K A + + + +G PL N+
Sbjct: 80 SVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVD--DKIKVIGYPLPAQNS-------- 129
Query: 201 KQRSSETLGLNKTI--NYIQTDAAITFGNSGGPLVNLDGEVIGI 242
+ E+ G K I N + DA I GNSG P++N + EVIG+
Sbjct: 130 -FKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGV 172
>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1EXF|A Chain A, Exfoliative Toxin A
pdb|1DUA|A Chain A, Crystal Structure Of Exfoliative Toxin A
Length = 242
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 144 EALDVECDLAIIRCNFPNNYPAL-------KLGKAADIRNGEFVIAMGSPLTLNNTNTFG 196
E DLA+IR N +L K+G + D+++G+ + +G P
Sbjct: 113 EPFGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHK------ 166
Query: 197 IISNKQRSS-ETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT 248
++ RS E L++ + Y GNSG + N +GE++GI+S KV+
Sbjct: 167 -VNQMHRSEIELTTLSRGLRYY---GFTVPGNSGSGIFNSNGELVGIHSSKVS 215
>pdb|1DUE|A Chain A, Crystal Structure Of Exfoliative Toxin A S195a Mutant
Length = 242
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 144 EALDVECDLAIIRCNFPNNYPAL-------KLGKAADIRNGEFVIAMGSPLTLNNTNTFG 196
E DLA+IR N +L K+G + D+++G+ + +G P
Sbjct: 113 EPFGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHK------ 166
Query: 197 IISNKQRSS-ETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT 248
++ RS E L++ + Y GN+G + N +GE++GI+S KV+
Sbjct: 167 -VNQMHRSEIELTTLSRGLRYY---GFTVPGNAGSGIFNSNGELVGIHSSKVS 215
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 312 LIWRVMYNSPAYLAGLHQEDIIIELNKKPCH 342
++W V SPA AGL D+I +N +P H
Sbjct: 36 IVWNVEEGSPACQAGLKAGDLITHINGEPVH 66
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 32.0 bits (71), Expect = 0.60, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 312 LIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRLV 357
++W V PA AGL Q D+I +N +P H EVV L+
Sbjct: 39 MVWHVEDGGPASEAGLRQGDLITHVNGEPVHG----LVHTEVVELI 80
>pdb|3HTV|A Chain A, Crystal Structure Of D-allose Kinase (np_418508.1) From
Escherichia Coli K12 At 1.95 A Resolution
Length = 310
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 36/155 (23%)
Query: 77 DVLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDG 136
DV+EN + +LV+ Y + G GF +G T AH V+G+ G + L D
Sbjct: 124 DVVENR----LTQQLVLAAY---LGTGXGFAVWXNGAPWTGAHGVAGELGH---IPLGDX 173
Query: 137 SKH--KGAVEALDVECDLAIIRCNF---PNNYPALKLGKAADIRNGEFVIAMGSPLTLNN 191
++H G L+ C +R + P NYP L FV A +P +
Sbjct: 174 TQHCACGNPGCLETNCSGXALRRWYEQQPRNYPLRDL----------FVHAENAPFVQS- 222
Query: 192 TNTFGIISNKQRSSETLGLNKTINYIQTDAAITFG 226
++ N R+ T +IN DA I G
Sbjct: 223 -----LLENAARAIAT-----SINLFDPDAVILGG 247
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 31.2 bits (69), Expect = 0.92, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELN 337
G I V PA LAGL ED+IIE+N
Sbjct: 32 GSFIKEVQKGGPADLAGLEDEDVIIEVN 59
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 31.2 bits (69), Expect = 0.96, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELN 337
G I V PA LAGL ED+IIE+N
Sbjct: 28 GSFIKEVQKGGPADLAGLEDEDVIIEVN 55
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 31.2 bits (69), Expect = 0.99, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELN 337
G I V PA LAGL ED+IIE+N
Sbjct: 28 GSFIKEVQKGGPADLAGLEDEDVIIEVN 55
>pdb|3HVN|A Chain A, Crystal Structure Of Cytotoxin Protein Suilysin From
Streptococcus Suis
Length = 508
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 150 CDLAIIRCNFPNNYPALKLGKAAD----------IRNGEFVIAMGSPLTLNNTNTFGIIS 199
D+A+I N YP L + I G+ +++ P L N ++ +++
Sbjct: 89 ADIAVIDAKAANIYPGALLRADQNLLDNNPTLISIARGDLTLSLNLP-GLANGDSHTVVN 147
Query: 200 NKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISF---AIP 256
+ RS+ G+N ++ A +GN+ L + ++ +K G SF A+P
Sbjct: 148 SPTRSTVRTGVNNLLSKWNNTYAGEYGNTQAELQYDETMAYSMSQLKTKFGTSFEKIAVP 207
Query: 257 ID 258
+D
Sbjct: 208 LD 209
>pdb|3AYF|A Chain A, Crystal Structure Of Nitric Oxide Reductase
pdb|3AYG|A Chain A, Crystal Structure Of Nitric Oxide Reductase Complex With
Hqno
Length = 800
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 69 RSQFNFVADVLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLI 114
++++N V DVL + V +E V YYR +NG G+ GLI
Sbjct: 144 KNRYNPVTDVLVLTDAQVYGLEKVRDYYRDVFTNGDGW-GLKKGLI 188
>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin)
pdb|1FUJ|B Chain B, Pr3 (Myeloblastin)
pdb|1FUJ|C Chain C, Pr3 (Myeloblastin)
pdb|1FUJ|D Chain D, Pr3 (Myeloblastin)
Length = 221
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 221 AAITFGNSGGPLVNLDGEVIGINSMKV 247
A I FG+SGGPL+ DG + GI+S +
Sbjct: 169 AGICFGDSGGPLI-CDGIIQGIDSFVI 194
>pdb|2Z0V|A Chain A, Crystal Structure Of Bar Domain Of Endophilin-Iii
pdb|2Z0V|B Chain B, Crystal Structure Of Bar Domain Of Endophilin-Iii
Length = 240
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 69 RSQFNFVADVLENVEKSVVNIELVIPYYRQT 99
RS FNF+ + +E V + V IE + Y+RQ+
Sbjct: 183 RSXFNFLENDVEQVSQLAVFIEAALDYHRQS 213
>pdb|1QY6|A Chain A, Structue Of V8 Protease From Staphylococcus Aureus
pdb|2O8L|A Chain A, Structure Of V8 Protease From Staphylococcus Aureus
Length = 274
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 217 IQTDAAITFGNSGGPLVNLDGEVIGI 242
+Q D + T GNSG P+ N EVIGI
Sbjct: 158 MQYDLSTTGGNSGSPVFNEKNEVIGI 183
>pdb|1WCZ|A Chain A, Crystal Structure Of An Alkaline Form Of V8 Protease From
Staphylococcus Aureus
Length = 268
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 217 IQTDAAITFGNSGGPLVNLDGEVIGI 242
+Q D + T GNSG P+ N EVIGI
Sbjct: 158 MQYDLSTTGGNSGSPVFNEKNEVIGI 183
>pdb|3CNQ|P Chain P, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|P Chain P, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|P Chain P, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 80
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 280 KYIGITMLTLNEKLIEQLRRDRHIPY 305
KY+ TLNEK +E+L++D + Y
Sbjct: 41 KYVDAASATLNEKAVEELKKDPSVAY 66
>pdb|1WHD|A Chain A, Solution Structure Of The Pdz Domain Of Rgs3
Length = 100
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 321 PAYLAGLHQEDIIIELNKKPCHSAKDIYAALEV 353
PA AGL Q D +++LN++P K + A E+
Sbjct: 48 PAERAGLQQLDTVLQLNERPVEHWKCVELAHEI 80
>pdb|2F5Y|A Chain A, Crystal Structure Of The Pdz Domain From Human Rgs-3
pdb|2F5Y|B Chain B, Crystal Structure Of The Pdz Domain From Human Rgs-3
Length = 91
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 321 PAYLAGLHQEDIIIELNKKPCHSAKDIYAALEV 353
PA AGL Q D +++LN++P K + A E+
Sbjct: 36 PAERAGLQQLDTVLQLNERPVEHWKCVELAHEI 68
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 305 YDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCH 342
Y + H ++W V PA AGL D+I +N +P H
Sbjct: 35 YSVHH--IVWHVEEGGPAQEAGLCAGDLITHVNGEPVH 70
>pdb|2W7S|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7U|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|3UFA|A Chain A, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
pdb|3UFA|B Chain B, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
Length = 200
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 34/149 (22%)
Query: 114 IITNAHVVSGKPGAQIIVTLPDGSKHKGA--VEALDV-----ECDLAIIRC--------N 158
I+TN H+ + V+ SK KG + D+ + DLAI+ N
Sbjct: 34 IVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDLAIVHVHETSTEGLN 93
Query: 159 FPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYI- 217
F N K A ++ + + +G P K + E+ G TIN+I
Sbjct: 94 FNKNVSYTKFADGAKVK--DRISVIGYPKGA---------QTKYKMFESTG---TINHIS 139
Query: 218 ----QTDAAITFGNSGGPLVNLDGEVIGI 242
+ DA GNSG P++N E+IGI
Sbjct: 140 GTFMEFDAYAQPGNSGSPVLNSKHELIGI 168
>pdb|2VID|A Chain A, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
pdb|2VID|B Chain B, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
Length = 204
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
Query: 104 SGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDV------ECDLAIIRC 157
+GF+ + I+TN HV I P+ K G + ++ + D+++I+
Sbjct: 25 TGFVVGKN-TILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQV 83
Query: 158 ------------NFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNT----NTFGIISNK 201
NF +N K AA + GE + +G P N + G + +
Sbjct: 84 EERAIERGPKGFNFNDNVTPFKY--AAGAKAGERIKVIGYPHPYKNKYVLYESTGPVMSV 141
Query: 202 QRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGI 242
+ SS I A GNSG P++N + E++GI
Sbjct: 142 EGSS-----------IVYSAHTESGNSGSPVLNSNNELVGI 171
>pdb|1DT2|A Chain A, Crystal Structure Of Exfoliative Toxin B
Length = 245
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 48/163 (29%)
Query: 114 IITNAHVV--SGKPGAQIIVTLP---DGSKHK-----GAVEALDVE-------CDLAIIR 156
I+TN HV + K + II T D K++ G EA +++ DLAII+
Sbjct: 59 IVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIK 118
Query: 157 CNFPNNYPALKLGKAA-------------DIRNGEFVIAMGSPLTLNNTNTFGIISNKQR 203
PN + G++A DI+ G+ +G P + S Q
Sbjct: 119 LK-PN-----EKGESAGDLIQPANIPDHIDIQKGDKYSLLGYPYN------YSAYSLYQS 166
Query: 204 SSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMK 246
E ++ Y + GNSG + NL GE+IGI+S K
Sbjct: 167 QIEMFNDSQYFGYTEV------GNSGSGIFNLKGELIGIHSGK 203
>pdb|1QTF|A Chain A, Crystal Structure Of Exfoliative Toxin B
Length = 246
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 226 GNSGGPLVNLDGEVIGINSMK 246
GNSG + NL GE+IGI+S K
Sbjct: 184 GNSGSGIFNLKGELIGIHSGK 204
>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin
Length = 223
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 97 RQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVEC------ 150
R +M G A D +++T AH VSG G +T G + A+ V
Sbjct: 17 RLSMGCGGALYAQD--IVLTAAHCVSGS-GNNTSITATGGVVDLQSSSAVKVRSTKVLQA 73
Query: 151 --------DLAIIRCNFPNNYPALKLGKAADIRNGEFVIA 182
D A+I+ P N P LK+ G F +A
Sbjct: 74 PGYNGTGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVA 113
>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With
Benzamidine
Length = 223
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 97 RQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVEC------ 150
R +M G A D +++T AH VSG G +T G + A+ V
Sbjct: 17 RLSMGCGGALYAQD--IVLTAAHCVSGS-GNNTSITATGGVVDLQSSSAVKVRSTKVLQA 73
Query: 151 --------DLAIIRCNFPNNYPALKLGKAADIRNGEFVIA 182
D A+I+ P N P LK+ G F +A
Sbjct: 74 PGYNGTGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVA 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,857,882
Number of Sequences: 62578
Number of extensions: 458543
Number of successful extensions: 1409
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 96
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)