RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18066
(375 letters)
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 327 bits (840), Expect = e-111
Identities = 138/296 (46%), Positives = 195/296 (65%), Gaps = 9/296 (3%)
Query: 65 PPSLRSQFNFVADVLENVEKSVVNIELVI--PYYRQ--TMSNGSGFIATDDGLIITNAHV 120
P S RSQ+NF+ADV+E +VV IE++ P+ + +SNGSGF+ DGLI+TNAHV
Sbjct: 7 PASPRSQYNFIADVVEKTAPAVVYIEILDRHPFLGREVPISNGSGFVVAADGLIVTNAHV 66
Query: 121 VSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFV 180
V+ + ++ V L G ++ V A+D D+A +R P L LG++AD+R GEFV
Sbjct: 67 VADRR--RVRVRLLSGDTYEAVVTAVDPVADIATLRIQTKEPLPTLPLGRSADVRQGEFV 124
Query: 181 IAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQTDAAITFGNSGGPLVNLDGEV 239
+AMGSP L NT T GI+S+ QR + LGL + YIQTDAAI FGN+GGPLVNLDGEV
Sbjct: 125 VAMGSPFALQNTITSGIVSSAQRPARDLGLPQTNVEYIQTDAAIDFGNAGGPLVNLDGEV 184
Query: 240 IGINSMKVTAGISFAIPIDYAIEFLTNYKRKDK--DRTITHKKYIGITMLTLNEKLIEQL 297
IG+N+MKVTAGISFAIP D EFL ++K+ + + ++YIG+ MLTL+ ++ +L
Sbjct: 185 IGVNTMKVTAGISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYIGVMMLTLSPSILAEL 244
Query: 298 RRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALEV 353
+ D+ HGVLI +V+ SPA+ AGL D+I+ + ++ +A+D+Y A+
Sbjct: 245 QLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT 300
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 321 bits (826), Expect = e-109
Identities = 131/294 (44%), Positives = 198/294 (67%), Gaps = 8/294 (2%)
Query: 65 PPSLRSQFNFVADVLENVEKSVVNIELV--IPYYRQ--TMSNGSGFIATDDGLIITNAHV 120
P SLR ++NF+ADV+E + +VV+IEL +P+ ++ +++GSGFI ++DGLI+TNAHV
Sbjct: 6 PNSLRHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 65
Query: 121 VSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFV 180
V+ K ++ V L +G+ ++ ++ +D + D+A+I+ + P L LG+++++R GEFV
Sbjct: 66 VTNKH--RVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFV 123
Query: 181 IAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQTDAAITFGNSGGPLVNLDGEV 239
+A+GSP +L NT T GI+S QR + LGL N ++YIQTDA I +GN+GGPLVNLDGEV
Sbjct: 124 VAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEV 183
Query: 240 IGINSMKVTAGISFAIPIDYAIEFLTNYKRKD-KDRTITHKKYIGITMLTLNEKLIEQLR 298
IGIN++KVTAGISFAIP D +FLT + K + IT KKYIGI M++L ++L+
Sbjct: 184 IGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELK 243
Query: 299 RDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALE 352
D+ G I V+ ++PA GL + D+II +N + SA D+ ++
Sbjct: 244 DRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIK 297
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo
sapiens} PDB: 3tjn_A 3nwu_A
Length = 231
Score = 246 bits (630), Expect = 6e-81
Identities = 103/211 (48%), Positives = 149/211 (70%), Gaps = 7/211 (3%)
Query: 65 PPSLRSQFNFVADVLENVEKSVVNIELV----IPYYRQTMSNGSGFIATDDGLIITNAHV 120
P SLR ++NF+ADV+E + +VV+IEL +++GSGFI ++DGLI+TNAHV
Sbjct: 23 PNSLRHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 82
Query: 121 VSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFV 180
V+ K ++ V L +G+ ++ ++ +D + D+A+I+ + P L LG+++++R GEFV
Sbjct: 83 VTNKH--RVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFV 140
Query: 181 IAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQTDAAITFGNSGGPLVNLDGEV 239
+A+GSP +L NT T GI+S QR + LGL N ++YIQTDA I +GN+GGPLVNLDGEV
Sbjct: 141 VAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEV 200
Query: 240 IGINSMKVTAGISFAIPIDYAIEFLTNYKRK 270
IGIN++KVTAGISFAIP D +FLT +
Sbjct: 201 IGINTLKVTAGISFAIPSDKIKKFLTESHDR 231
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 229 bits (585), Expect = 6e-73
Identities = 89/300 (29%), Positives = 137/300 (45%), Gaps = 46/300 (15%)
Query: 75 VADVLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSG-------KPGA 127
V V V SVV +E + + GSG I + +GLI+TN HV++ P
Sbjct: 8 VEQVAAKVVPSVVMLETDL---GRQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPP 64
Query: 128 QIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPL 187
+ VT DG V D D+A++R + + LG ++D+R G+ V+A+GSPL
Sbjct: 65 KTTVTFSDGRTAPFTVVGADPTSDIAVVRVQGVSGLTPISLGSSSDLRVGQPVLAIGSPL 124
Query: 188 TLNNTNTFGIISNKQRS----SETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGIN 243
L T T GI+S R E N ++ IQTDAAI GNSGG LVN++ +++G+N
Sbjct: 125 GLEGTVTTGIVSALNRPVSTTGEAGNQNTVLDAIQTDAAINPGNSGGALVNMNAQLVGVN 184
Query: 244 SMKVTA------------GISFAIPIDYAIEFLTNYKRKDKDRTITHKKYIGITMLTLNE 291
S T G+ FAIP+D A K +H +G+ + +
Sbjct: 185 SAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTGK---ASH-ASLGVQVTNDKD 240
Query: 292 KLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAAL 351
T G I V+ A AG+ + ++ +++ +P +SA + AA+
Sbjct: 241 ----------------TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAV 284
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 220 bits (564), Expect = 8e-70
Identities = 85/284 (29%), Positives = 126/284 (44%), Gaps = 27/284 (9%)
Query: 76 ADVLENVEKSVVNI-----ELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQII 130
+ +VVN+ + + GSG I G IITN HV++ QII
Sbjct: 12 NLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--ADQII 69
Query: 131 VTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLN 190
V L DG + + D DLA++ P + + G+ V+A+G+P L
Sbjct: 70 VALQDGRVFEALLVGSDSLTDLAVLIIKATGGLPTIPINARRVPHIGDVVLAIGNPYNLG 129
Query: 191 NTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSM----- 245
T T GIIS R L N++QTDA+I GNSGG LVN GE++GIN++
Sbjct: 130 QTITQGIISATGRIG--LNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKS 187
Query: 246 ---KVTAGISFAIPIDYAIEFLTNYKRKDKDRTITHKKYIGITMLTLNEKLIEQLRRDRH 302
+ GI FAIP A + + R + + YIGI + + D+
Sbjct: 188 NDGETPEGIGFAIPFQLATKIMDKLIRDGR----VIRGYIGIGGREIAPLHAQGGGIDQ- 242
Query: 303 IPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKD 346
G+++ V + PA AG+ D+II ++ KP SA +
Sbjct: 243 -----LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALE 281
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 220 bits (562), Expect = 3e-69
Identities = 90/314 (28%), Positives = 143/314 (45%), Gaps = 43/314 (13%)
Query: 65 PPSLRSQFNFVADVLENVEKSVVNIELV--------IPYYRQTMSNGSGFIATDDGLIIT 116
P L++ + + SVV I + + +GSGF+ G I+T
Sbjct: 9 PKKLQTDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDKQGHIVT 68
Query: 117 NAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFP-NNYPALKLGKAADIR 175
N HV+ G + + VTL D + V D + D+A++R + P N + +G +AD+
Sbjct: 69 NYHVIRG--ASDLRVTLADQTTFDAKVVGFDQDKDVAVLRIDAPKNKLRPIPVGVSADLL 126
Query: 176 NGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTI-NYIQTDAAITFGNSGGPLVN 234
G+ V A+G+P L++T T G+IS +R + + I + IQTDAAI GNSGGPL++
Sbjct: 127 VGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLD 186
Query: 235 LDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDKDRTITHKKYIGITMLTL 289
G +IGIN+ + +G+ F+IP+D + R K + +GI
Sbjct: 187 SSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGK----VTRPILGIKFAP- 241
Query: 290 NEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQE-----------DIIIELNK 338
++ +EQL GVL+ + PA AGL DII +N
Sbjct: 242 -DQSVEQLGVS---------GVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNG 291
Query: 339 KPCHSAKDIYAALE 352
+ D+Y L+
Sbjct: 292 TKVSNGSDLYRILD 305
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 214 bits (548), Expect = 5e-66
Identities = 88/325 (27%), Positives = 140/325 (43%), Gaps = 54/325 (16%)
Query: 50 LPSIDAAQRIDIDYKPPSLRSQFNFVADVLENVEKSVVNIELVI---------------- 93
+P A Q PSL A +LE V +VV++ +
Sbjct: 2 IPGQVADQA-----PLPSL-------APMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFF 49
Query: 94 ------PYYRQTMSNGSGFI-ATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEAL 146
+ GSG I G ++TN HV++ +I + L DG + +
Sbjct: 50 GDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQ--AQKISIQLNDGREFDAKLIGS 107
Query: 147 DVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSE 206
D + D+A+++ P+ + + + +R G+F +A+G+P L T T GI+S RS
Sbjct: 108 DDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSG- 166
Query: 207 TLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAI 261
L L N+IQTDA+I GN+GG L+NL+GE+IGIN+ + GI FAIP + A
Sbjct: 167 -LNLEGLENFIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMAR 225
Query: 262 EFLTNYKRKDKDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSP 321
+ + +GI ++ + + D G + V+ S
Sbjct: 226 TLAQQLIDFGE----IKRGLLGIKGTEMSADIAKAFNLDV------QRGAFVSEVLPGSG 275
Query: 322 AYLAGLHQEDIIIELNKKPCHSAKD 346
+ AG+ DII LN KP +S +
Sbjct: 276 SAKAGVKAGDIITSLNGKPLNSFAE 300
Score = 49.6 bits (119), Expect = 9e-07
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 269 RKDKDRTIT--------HKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNS 320
R K + + L + + D G+ I V+ S
Sbjct: 320 RNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLK-----DGGKGIKIDEVVKGS 374
Query: 321 PAYLAGLHQEDIIIELNKKPCHSAKDIYAALE 352
PA AGL ++D+II +N+ +S ++ L
Sbjct: 375 PAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLA 406
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 211 bits (539), Expect = 8e-66
Identities = 90/325 (27%), Positives = 141/325 (43%), Gaps = 54/325 (16%)
Query: 50 LPSIDAAQRIDIDYKPPSLRSQFNFVADVLENVEKSVVNI-------------------- 89
+P A Q PSL A +LE V +VV++
Sbjct: 2 IPGQVADQA-----PLPSL-------APMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFF 49
Query: 90 --ELVIPYYRQTMSNGSGFI-ATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEAL 146
+L + GSG I G ++TN HV++ +I + L DG + +
Sbjct: 50 GDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQ--AQKISIQLNDGREFDAKLIGS 107
Query: 147 DVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSE 206
D + D+A+++ P+ + + + +R G+F +A+G+P L T T GI+S RS
Sbjct: 108 DDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRS-- 165
Query: 207 TLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAI 261
L L N+IQTDA+I GNSGG L+NL+GE+IGIN+ + GI FAIP + A
Sbjct: 166 GLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMAR 225
Query: 262 EFLTNYKRKDKDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSP 321
+ + +GI ++ + + D G + V+ S
Sbjct: 226 TLAQQLIDFGE----IKRGLLGIKGTEMSADIAKAFNLDV------QRGAFVSEVLPGSG 275
Query: 322 AYLAGLHQEDIIIELNKKPCHSAKD 346
+ AG+ DII LN KP +S +
Sbjct: 276 SAKAGVKAGDIITSLNGKPLNSFAE 300
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 209 bits (533), Expect = 1e-63
Identities = 88/259 (33%), Positives = 127/259 (49%), Gaps = 20/259 (7%)
Query: 94 PYYRQTMSNGSGFI-ATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDL 152
++ M+ GSG I D G ++TN HVV I V L DG K + D D+
Sbjct: 79 GQQQKFMALGSGVIIDADKGYVVTNNHVVDN--ATVIKVQLSDGRKFDAKMVGKDPRSDI 136
Query: 153 AIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNK 212
A+I+ P N A+K+ + +R G++ +A+G+P L T T GI+S RS L
Sbjct: 137 ALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAEN 194
Query: 213 TINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNY 267
N+IQTDAAI GN+GG LVNL+GE+IGIN+ + GI FAIP + +
Sbjct: 195 YENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQM 254
Query: 268 KRKDKDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGL 327
+ + +GI LN +L + ++ D G + +V+ NS A AG+
Sbjct: 255 VEYGQ----VKRGELGIMGTELNSELAKAMKVDA------QRGAFVSQVLPNSSAAKAGI 304
Query: 328 HQEDIIIELNKKPCHSAKD 346
D+I LN KP S
Sbjct: 305 KAGDVITSLNGKPISSFAA 323
Score = 46.6 bits (111), Expect = 8e-06
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 304 PYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALE 352
GV++ V +PA GL + D+II N++ + ++ L+
Sbjct: 378 NKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLD 426
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 204 bits (521), Expect = 6e-62
Identities = 100/312 (32%), Positives = 149/312 (47%), Gaps = 55/312 (17%)
Query: 76 ADVLENVEKSVVNI------------------------------ELVIPYYRQTMSNGSG 105
A VL+N+ ++VN+ + R+ S GSG
Sbjct: 22 APVLKNIMPAIVNVAVQGYLPNDVTPPGSAGNDEENQPNNRPPQSRMPEKGRKFESIGSG 81
Query: 106 FI-ATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYP 164
I ++G+IITN HV+ + I VTL DG + K + D E DLA+++ + N
Sbjct: 82 VIIDPNNGVIITNDHVIRN--ASLITVTLQDGRRLKARLIGGDSETDLAVLKID-AKNLK 138
Query: 165 ALKLGKAADIRNGEFVIAMGSPLTLNN-----TNTFGIISNKQRSSETLGLNKTINYIQT 219
+L +G + + G+FV+A+G+P LN+ + TFGI+S +RS L + N+IQT
Sbjct: 139 SLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSD--LNIEGVENFIQT 196
Query: 220 DAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDKDR 274
DAAI GNSGG LVN GE+IGIN+ ++ GI FAIPI+ + +
Sbjct: 197 DAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKFGS-- 254
Query: 275 TITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIII 334
H+ +GI + L +L + + G L+ +V NSPA LAGL DII
Sbjct: 255 --IHRGLMGIFVQHLTPELAQAMGYPED-----FQGALVSQVNPNSPAELAGLKAGDIIT 307
Query: 335 ELNKKPCHSAKD 346
++N A
Sbjct: 308 QINDTKITQATQ 319
Score = 46.5 bits (111), Expect = 9e-06
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 264 LTNYKRKDKDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAY 323
+T+ K ++ + G+ + ++ GV + NS +
Sbjct: 350 VTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGN---------VIGVQVVGASENSAGW 400
Query: 324 LAGLHQEDIIIELNKKPCHSAKDIYAALE 352
AG+ DIII NKKP K + +
Sbjct: 401 RAGIRPGDIIISANKKPVTDVKSLQTIAQ 429
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A
{Thermotoga maritima} SCOP: b.47.1.1
Length = 239
Score = 195 bits (498), Expect = 6e-61
Identities = 79/218 (36%), Positives = 111/218 (50%), Gaps = 32/218 (14%)
Query: 73 NFVADVLENVEKSVVNI------------------------ELVIPYYRQTMSNGSGFIA 108
+ + +V+E +VV I EL + RQ S GSGFI
Sbjct: 4 SPIVNVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFIF 63
Query: 109 TDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPN-NYPALK 167
+G I+TN HVV G I VT+ DGSK+ D E D+A+I+ + +P L+
Sbjct: 64 DPEGYILTNYHVVGG--ADNITVTMLDGSKYDAEYIGGDEELDIAVIKIKASDKKFPYLE 121
Query: 168 LGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRS-SETLGLNKTINYIQTDAAITFG 226
G + ++ GE+ IA+G+PL +T T G++S R + G + IQTDAAI G
Sbjct: 122 FGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYVGLIQTDAAINPG 181
Query: 227 NSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYA 260
NSGGPL+N+ GEVIGIN+ V + FAIPI+
Sbjct: 182 NSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTV 219
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR;
1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A*
3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A
3lgt_A 2r3u_A
Length = 237
Score = 181 bits (461), Expect = 1e-55
Identities = 67/198 (33%), Positives = 93/198 (46%), Gaps = 17/198 (8%)
Query: 76 ADVLENVEKSVVNI-----ELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQII 130
+ +VVN+ + + GSG I G IITN HV++ QII
Sbjct: 23 NLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--ADQII 80
Query: 131 VTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLN 190
V L DG + + D DLA+++ N P + + G+ V+A+G+P L
Sbjct: 81 VALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLG 140
Query: 191 NTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSM----- 245
T T GIIS R L N++QTDA+I GNSGG LVN GE++GIN++
Sbjct: 141 QTITQGIISATGRIG--LNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKS 198
Query: 246 ---KVTAGISFAIPIDYA 260
+ GI FAIP A
Sbjct: 199 NDGETPEGIGFAIPFQLA 216
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase;
2.60A {Escherichia coli}
Length = 245
Score = 179 bits (456), Expect = 1e-54
Identities = 74/239 (30%), Positives = 112/239 (46%), Gaps = 44/239 (18%)
Query: 50 LPSIDAAQRIDIDYKPPSLRSQFNFVADVLENVEKSVVNI-------------------- 89
+P A Q PSL A +LE V +VV++
Sbjct: 2 IPGQVADQA-----PLPSL-------APMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFF 49
Query: 90 --ELVIPYYRQTMSNGSGFI-ATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEAL 146
+L + GSG I G ++TN HV++ +I + L DG + +
Sbjct: 50 GDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQ--AQKISIQLNDGREFDAKLIGS 107
Query: 147 DVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSE 206
D + D+A+++ P+ + + + +R G+F +A+G+P L T T GI+S RS
Sbjct: 108 DDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRS-- 165
Query: 207 TLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYA 260
L L N+IQTDA+I GNSGG L+NL+GE+IGIN+ + GI FAIP + A
Sbjct: 166 GLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMA 224
>3k6y_A Serine protease, possible membrane-associated serine protease;
oxidative stress, disulfide, BENT helix, HY protease;
1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Length = 237
Score = 162 bits (413), Expect = 2e-48
Identities = 53/206 (25%), Positives = 80/206 (38%), Gaps = 13/206 (6%)
Query: 73 NFVADVLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVT 132
V+ E SVV I + Q + G+GF+ + D ++TNAHVV+G + V
Sbjct: 31 LVNNPVVAATEPSVVKIR-SLAPRCQKVLEGTGFVISPDR-VMTNAHVVAG--SNNVTVY 86
Query: 133 LPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNT 192
D + V + D D+AI+ P L A + G V+ +G P N T
Sbjct: 87 AGDKP-FEATVVSYDPSVDVAILAVP-HLPPPPLVFA-AEPAKTGADVVVLGYPGGGNFT 143
Query: 193 NTFGIISNKQRSS----ETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT 248
T I R S T + A + G+SGGPL++L+G+V+G+
Sbjct: 144 ATPARIREAIRLSGPDIYGDPEPVTRDVYTIRADVEQGDSGGPLIDLNGQVLGVVFGAAI 203
Query: 249 --AGISFAIPIDYAIEFLTNYKRKDK 272
A F + L
Sbjct: 204 DDAETGFVLTAGEVAGQLAKIGATQP 229
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A
{Staphylococcus aureus}
Length = 210
Score = 150 bits (381), Expect = 4e-44
Identities = 41/214 (19%), Positives = 74/214 (34%), Gaps = 31/214 (14%)
Query: 82 VEKSVVNIE--LVIPY-YRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSK 138
+EK+V ++ PY + + +GF+ IITN HV I P+G K
Sbjct: 1 MEKNVTQVKDTNNFPYNGVVSFKDATGFV-IGKNTIITNKHVSKDYKVGDRITAHPNGDK 59
Query: 139 HKGA------VEALDVECDLAIIRCNFPNNYPALK----------LGKAADIRNGEFVIA 182
G + + D++++ K A D + + +
Sbjct: 60 GNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKV 119
Query: 183 MGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGI 242
+G PL N+ + + + N + DA I GNSG P++N + EVIG+
Sbjct: 120 IGYPLPAQNSFKQFESTGTIKRIKD-------NILNFDAYIEPGNSGSPVLNSNNEVIGV 172
Query: 243 NSMKVTA----GISFAIPIDYAIEFLTNYKRKDK 272
+ +F+ + +
Sbjct: 173 VYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQHH 206
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 136 bits (343), Expect = 1e-38
Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 32/212 (15%)
Query: 83 EKSVVNIE--LVIPYY-RQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIV------TL 133
E +V ++ + PY + +GF+ I+TN HV I
Sbjct: 1 ENNVTKVKDTNIFPYTGVVAFKSATGFVV-GKNTILTNKHVSKNYKVGDRITAHPNSDKG 59
Query: 134 PDGSKHKGAVEALDVECDLAIIRCNFPNNYPALK----------LGKAADIRNGEFVIAM 183
G + + D+++I+ K AA + GE + +
Sbjct: 60 NGGIYSIKKIINYPGKEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVI 119
Query: 184 GSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGIN 243
G P N + S E + I A GNSG P++N + E++GI+
Sbjct: 120 GYPHPYKNKYVLYESTGPVMSVE-------GSSIVYSAHTESGNSGSPVLNSNNELVGIH 172
Query: 244 SMKV-----TAGISFAIPIDYAIEFLTNYKRK 270
+F+ K
Sbjct: 173 FASDVKNDDNRNAYGVYFTPEIKKFIAENIDK 204
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 134 bits (339), Expect = 5e-38
Identities = 36/211 (17%), Positives = 60/211 (28%), Gaps = 34/211 (16%)
Query: 83 EKSVVNIE--LVIPYYRQT-MSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTL------ 133
EK+V I PY G+G + I+TN H+ +
Sbjct: 1 EKNVKEITDATKEPYNSVVAFVGGTGVV-VGKNTIVTNKHIAKS--NDIFKNRVSAHHSS 57
Query: 134 ---PDGSKHKGAVEALDVECDLAIIRCNFPNNYP------ALKLGKAADIRNGEFVIAMG 184
G+ + + DLAI+ + + A + + + +G
Sbjct: 58 KGKGGGNYDVKDIVEYPGKEDLAIVHVHETSTEGLNFNKNVSYTKFADGAKVKDRISVIG 117
Query: 185 SPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINS 244
P + +++ DA GNSG P++N E+IGI
Sbjct: 118 YPKGAQTKYKMFESTGTINHISG-------TFMEFDAYAQPGNSGSPVLNSKHELIGILY 170
Query: 245 MKVT-----AGISFAIPIDYAIEFLTNYKRK 270
EF+ N K
Sbjct: 171 AGSGKDESEKNFGVYFTPQLK-EFIQNNIEK 200
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A
{Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A
1exf_A 1due_A
Length = 242
Score = 133 bits (335), Expect = 6e-37
Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 38/195 (19%)
Query: 92 VIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEA------ 145
+ + + ++ +G + ++TN H+ G V+
Sbjct: 46 IGNVFVKGQTSATGVL-IGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGE 104
Query: 146 ----------LDVECDLAIIR-------CNFPNNYPALKLGKAADIRNGEFVIAMGSPLT 188
DLA+IR + + K+G + D+++G+ + +G P
Sbjct: 105 YEVKEILQEPFGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPF- 163
Query: 189 LNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT 248
++ S + L ++ GNSG + N +GE++GI+S KV+
Sbjct: 164 -DHKVNQMHRSE-------IELTTLSRGLRYYGFTVPGNSGSGIFNSNGELVGIHSSKVS 215
Query: 249 -----AGISFAIPID 258
I++ + I
Sbjct: 216 HLDREHQINYGVGIG 230
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol
protease, RNA replication, ribosomal frameshifting,
catalytic triad, membrane; 2.00A {Human astrovirus 1}
Length = 163
Score = 117 bits (295), Expect = 6e-32
Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 32/179 (17%)
Query: 85 SVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVE 144
++ I+ G+GF + +D I+T AHVV + V +G ++ V
Sbjct: 12 ALCVID-------TPEGKGTGFFSGND--IVTAAHVVGN--NTFVNVCY-EGLMYEAKVR 59
Query: 145 ALDVECDLAIIRCNFPN-NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQR 203
+ E D+A I C LKL K + + L + ++
Sbjct: 60 YMP-EKDIAFITCPGDLHPTARLKLSK--NPDYSCVTVMAYVNEDLVVSTAAAMVYG--- 113
Query: 204 SSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMK--VTAGISFAIPIDYA 260
N + G SG P+ + V+ ++ T G P D+
Sbjct: 114 -----------NTLSYAVRTQDGMSGAPVCDKYCRVLAVHQTNTGYTGGAVIIDPTDFH 161
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 116 bits (292), Expect = 1e-30
Identities = 41/241 (17%), Positives = 72/241 (29%), Gaps = 44/241 (18%)
Query: 65 PPSLRSQFNFVADVLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGK 124
PP+ + + + D + SV + + + +G + I+TN HV
Sbjct: 18 PPTDKELYTHITDNARSPYNSVGTVF------VKGSTLATGVL-IGKNTIVTNYHVAREA 70
Query: 125 PGAQIIVTLPDGSKHKGAVE-----------------ALDVECDLAIIR-------CNFP 160
+ DLAII+ +
Sbjct: 71 AKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLKPNEKGESAG 130
Query: 161 NNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTD 220
+ + DI G+ +G P N + + + ++ + N Q
Sbjct: 131 DLIQPANIPDHIDIAKGDKYSLLGYPY---NYSAYSLYQSQ---------IEMFNDSQYF 178
Query: 221 AAITFGNSGGPLVNLDGEVIGINSMKVTA-GISFAIPIDYAIEFLTNYKRKDKDRTITHK 279
GNSG + NL GE+IGI+S K + + + I L + D
Sbjct: 179 GYTEVGNSGSGIFNLKGELIGIHSGKGGQHNLPIGVFFNRKISSLYSVDNTFGDTLGNDL 238
Query: 280 K 280
K
Sbjct: 239 K 239
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 102 bits (254), Expect = 3e-25
Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 29/195 (14%)
Query: 84 KSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIV----------TL 133
V I++ P SG + D ++TN HVV G +
Sbjct: 20 APVTYIQVEAP---TGTFIASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNY 75
Query: 134 PDGSKHKGAVEALDVECDLAIIR-------CNFPNNYPALKLGKAADIRNGEFVIAMGSP 186
P+G + E DLAI++ + + A+ + + + G P
Sbjct: 76 PNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYP 135
Query: 187 LTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMK 246
+ + +K + + G +Q D + T GNSG P+ N EVIGI+
Sbjct: 136 G---DKPVATMWESKGKITYLKG-----EAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGG 187
Query: 247 VTAGISFAIPIDYAI 261
V + A+ I+ +
Sbjct: 188 VPNEFNGAVFINENV 202
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 94.5 bits (235), Expect = 3e-23
Identities = 34/178 (19%), Positives = 52/178 (29%), Gaps = 18/178 (10%)
Query: 94 PYYRQTMSNGSGFIATDDG--LIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECD 151
Y T GF +T H G + + D
Sbjct: 6 AIYSSTGRCSLGFNVRSGSTYYFLTAGHCTDG--ATTWWANSARTTVLGTTSGSSFPNND 63
Query: 152 LAIIRCNFPNNYPALKLG-----KAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSE 206
I+R +G AA+ G V GS G ++ +
Sbjct: 64 YGIVRYTNTTIPKDGTVGGQDITSAANATVGMAVTRRGSTTGT----HSGSVTALNATVN 119
Query: 207 TLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIPIDYA 260
G + I+T+ G+SGGPL + IG+ S + G +F P+ A
Sbjct: 120 YGGGDVVYGMIRTNVCAEPGDSGGPLYS-GTRAIGLTSGGSGNCSSGGTTFFQPVTEA 176
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 78.9 bits (195), Expect = 3e-18
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 279 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNK 338
++YIG+ MLTL+ ++ +L+ D+ HGVLI +V+ SPA+ AGL D+I+ + +
Sbjct: 5 RRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGE 64
Query: 339 KPCHSAKDIYAALEV 353
+ +A+D+Y A+
Sbjct: 65 QMVQNAEDVYEAVRT 79
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels,
C-terminal alpha-beta extra domain; 1.90A {Porcine
respiratory and reproductivesyndrome virus} PDB: 3fao_A
Length = 213
Score = 78.3 bits (192), Expect = 4e-17
Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 33/167 (19%)
Query: 98 QTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRC 157
+M +G F +T AHV++G + + + DV+ D AI C
Sbjct: 27 SSMGSGGVFTIDGKIKCVTAAHVLTG--NSARVSGVGFNQMLDF-----DVKGDFAIADC 79
Query: 158 -NFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINY 216
N+ P + + ++ + G G+I N +
Sbjct: 80 PNWQGVAPKAQFCEDGWTGRAYWLTSSG--------VEPGVIGN------------GFAF 119
Query: 217 IQTDAAITFGNSGGPLVNLDGEVIGINSMKVTAGI-SFAIPIDYAIE 262
T G+SG P++ GE++G+++ G P
Sbjct: 120 CFTAC----GDSGSPVITEAGELVGVHTGSNKQGGGIVTRPSGQFCN 162
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 74.6 bits (184), Expect = 9e-17
Identities = 20/84 (23%), Positives = 44/84 (52%)
Query: 277 THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIEL 336
K++IGI M T+ L+++L+ +++ G+ + V NSP+ G+ DII+++
Sbjct: 3 HMKRFIGIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKV 62
Query: 337 NKKPCHSAKDIYAALEVVRLVNFQ 360
N +P + ++ A+ + +
Sbjct: 63 NGRPLVDSSELQEAVLTESPLLLE 86
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 68.7 bits (167), Expect = 2e-13
Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 26/176 (14%)
Query: 103 GSGFIATDDGLIITNAHVVSGKPGAQIIV----------TLPDGSKHKGAVEALDVECDL 152
SG + D ++TN HVV G + P+G + E DL
Sbjct: 36 ASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDL 94
Query: 153 AIIR-------CNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSS 205
AI++ + + A+ + + + G P + + +K + +
Sbjct: 95 AIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYP---GDKPVATMWESKGKIT 151
Query: 206 ETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAI 261
G +Q D + T GNSG P+ N EVIGI+ V + A+ I+ +
Sbjct: 152 YLKG-----EAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENV 202
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 65.7 bits (161), Expect = 2e-13
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 250 GISFAIPIDYAIEFLTNYKRKDKDRTITHKK----YIGITMLTLNEKLIEQLRRDRHIPY 305
G+ FAIP + AI + ++ + K +GI M+ L+ +RR +IP
Sbjct: 3 GLGFAIPANDAINII--------EQLEKNGKVTRPALGIQMVNLSNVSTSDIRR-LNIPS 53
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKD 346
++T GV++ V N PA L + D+I +++ K S+ D
Sbjct: 54 NVTSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIASSTD 93
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 63.5 bits (154), Expect = 6e-12
Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 26/191 (13%)
Query: 101 SNGSGFIATDDGLIITNAHVV----SGKPGAQIIV-------TLPDGS-------KHKGA 142
S+ +G + + I+TN H V S A+ V T +GS G
Sbjct: 30 SSCTGTLIAPN-KILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMTEFYVPSGY 88
Query: 143 VEALDVECDLAIIRCNFPNNYPALKLG-KAADIRNGEFVIAMGSPLTLNNTNTFGIISNK 201
+ + D A+I+ + + G + G P
Sbjct: 89 INTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYP----GDKMRSTGKVS 144
Query: 202 QRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVTAG-ISFAIPIDYA 260
Q + N GNSG +++ + +++G+++ + G I+ A
Sbjct: 145 QWEMSGSVTREDTNLAYYTIDTFSGNSGSAMLDQNQQIVGVHNAGYSNGTINGGPKATAA 204
Query: 261 I-EFLTNYKRK 270
EF+ K +
Sbjct: 205 FVEFINYAKAQ 215
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 62.6 bits (152), Expect = 7e-12
Identities = 36/176 (20%), Positives = 55/176 (31%), Gaps = 26/176 (14%)
Query: 105 GFIATDDG--LIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDV-ECDLAIIRCNFPN 161
F T G +T H A + G G E D I+R +
Sbjct: 17 AFNVTKGGARYFVTAGHC--TNISAN--WSASSGGSVVGVREGTSFPTNDYGIVRYTDGS 72
Query: 162 ---------NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNK 212
N + AA+ G+ + GS T G ++ + G
Sbjct: 73 SPAGTVDLYNGSTQDISSAANAVVGQAIKKSGS----TTKVTSGTVTAVNVTV-NYGDGP 127
Query: 213 TINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKV----TAGISFAIPIDYAIEFL 264
N ++T A G+SGG +GI+S TAG + P+ A+
Sbjct: 128 VYNMVRTTACSAGGDSGGAHFA-GSVALGIHSGSSGCSGTAGSAIHQPVTEALSAY 182
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase;
2.40A {Sesbania mosaic virus}
Length = 191
Score = 62.5 bits (151), Expect = 1e-11
Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 26/173 (15%)
Query: 103 GSGFIATDDG--LIITNAHVVSGKPGAQIIVTLPDGSKHKGA-----VEALDVECDLAII 155
G G DG ++T HV + G + + + D D AI+
Sbjct: 29 GFGCRTKIDGEDCLLTAHHVWCN--SMRPTGLAKAGKQVSVEDWEISMSSSDKMLDFAIV 86
Query: 156 RCNFPNNYPA---LKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNK 212
R P + + +K + + + G + + G S + +
Sbjct: 87 RV--PTHVWSKLGVKSTPLVCPSSKDVITCYGGSSSDCLMSGVGSSSTSEFT-------- 136
Query: 213 TINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVTAG-ISFAIPIDYAIEFL 264
+ G SG PL + V+G++ G ++ + + Y +L
Sbjct: 137 --WKLTHTCPTAAGWSGTPLYS-SRGVVGMHVGFEEIGKLNRGVNMFYVANYL 186
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 55.7 bits (134), Expect = 2e-09
Identities = 35/164 (21%), Positives = 50/164 (30%), Gaps = 25/164 (15%)
Query: 94 PYYRQTMSNGS-GFIATDDGL--IITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDV-E 149
Y S S GF T +T H G A T G G A
Sbjct: 8 EYSINNASLCSVGFSVTRGATKGFVTAGHC--GTVNA----TARIGGAVVGTFAARVFPG 61
Query: 150 CDLAIIRCNFPNN-YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETL 208
D A + P + G + G A+G+ + G + +
Sbjct: 62 NDRAWVSLTSAQTLLPRVANGSSFVTVRGSTEAAVGAAVC-----RSGR-TTGYQCGTIT 115
Query: 209 GLNKTINY--------IQTDAAITFGNSGGPLVNLDGEVIGINS 244
N T NY Q +A + G+SGG + G+ G+ S
Sbjct: 116 AKNVTANYAEGAVRGLTQGNACMGRGDSGGSWITSAGQAQGVMS 159
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 52.2 bits (125), Expect = 2e-08
Identities = 33/176 (18%), Positives = 54/176 (30%), Gaps = 30/176 (17%)
Query: 104 SGFIATDDGL--IITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPN 161
GF + +G+ +T H A + G+ D IIR + P
Sbjct: 16 LGFNVSVNGVAHALTAGHC--TNISASWSIGTRTGTSFPNN--------DYGIIRHSNPA 65
Query: 162 ---------NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNK 212
N + A + G+ V GS G ++ +
Sbjct: 66 AADGRVYLYNGSYQDITTAGNAFVGQAVQRSGS----TTGLRSGSVTGLNATVNYGSSGI 121
Query: 213 TINYIQTDAAITFGNSGGPLVNLDGEVIGI----NSMKVTAGISFAIPIDYAIEFL 264
IQT+ G+SGG L +G+ + T G +F P+ A+
Sbjct: 122 VYGMIQTNVCAQPGDSGGSLFA-GSTALGLTSGGSGNCRTGGTTFYQPVTEALSAY 176
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 48.3 bits (115), Expect = 6e-07
Identities = 34/179 (18%), Positives = 55/179 (30%), Gaps = 45/179 (25%)
Query: 105 GFIATDDG--LIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPN- 161
GF T H G G + V+ P G+ D+ +R +
Sbjct: 19 GFSVRQGSQTGFATAGHC--GSTGTR--VSSPSGTVAGSYFPGRDM----GWVRITSADT 70
Query: 162 --------NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT 213
N + + + + G V G+ G I N+T
Sbjct: 71 VTPLVNRYNGGTVTVTGSQEAATGSSVCRSGA----TTGWRCGTIQ---------SKNQT 117
Query: 214 INY--------IQTDAAITFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIPIDYA 260
+ Y +T A G+SGGP + + G+ S + GI+F PI+
Sbjct: 118 VRYAEGTVTGLTRTTACAEGGDSGGPWLT-GSQAQGVTSGGTGDCRSGGITFFQPINPL 175
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 47.2 bits (112), Expect = 2e-06
Identities = 37/182 (20%), Positives = 57/182 (31%), Gaps = 45/182 (24%)
Query: 104 SGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNY 163
GF IT H G+ GA P G+ + D A +R N
Sbjct: 19 IGFAVNGG--FITAGHC--GRTGAT--TANPTGTFAGSSFPGNDY----AFVRTGAGVNL 68
Query: 164 PA---------LKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTI 214
A +++ G V GS G I+ LN ++
Sbjct: 69 LAQVNNYSGGRVQVAGHTAAPVGSAVCRSGS----TTGWHCGTIT---------ALNSSV 115
Query: 215 NY--------IQTDAAITFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIPIDYAIE 262
Y I+T G+SGG L+ + G+ S T G +F P++ ++
Sbjct: 116 TYPEGTVRGLIRTTVCAEPGDSGGSLLA-GNQAQGVTSGGSGNCRTGGTTFFQPVNPILQ 174
Query: 263 FL 264
Sbjct: 175 AY 176
>2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like
cysteine protease, capsid protein, core protein; 1.9A
{Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB:
2j92_A 2wv4_A 2wv5_A
Length = 209
Score = 46.6 bits (110), Expect = 3e-06
Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 20/162 (12%)
Query: 111 DGLIITNAHVVSGKPGAQIIVTLPDGSKHKGA----------VEALDVECDLAIIRCNFP 160
+ H+ + + +I++ DG + V+ D+ D A++ +
Sbjct: 39 GTAYLVPRHLFA-EKYDKIML---DGRAMTDSDYRVFEFEIKVKGQDMLSDAALMVLHRG 94
Query: 161 NNYPAL--KLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQ 218
N + A ++ G V+ + + + G + ++ +
Sbjct: 95 NKVRDITKHFRDTARMKKGTPVVGVVNNADVGRLIFSGEALTYKDIVVSMDGDTMPGLFA 154
Query: 219 TDAAITFGNSGGPLVNLDGE---VIGINSMKVTAGISFAIPI 257
AA G +GG ++ DG ++G +S G+ + +
Sbjct: 155 YKAATRAGYAGGAVLAKDGADTFIVGTHSAGG-NGVGYCSCV 195
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 45.3 bits (107), Expect = 6e-06
Identities = 33/177 (18%), Positives = 51/177 (28%), Gaps = 37/177 (20%)
Query: 105 GFIATDDG---LIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPN 161
GF AT+ +T H G G Q+ + G + D N
Sbjct: 18 GFAATNASGQPGFVTAGHC--GSVGTQVSIGNGRGVFERSVFPGNDAAFVRGTSNFTLTN 75
Query: 162 NYPALKLGKAADIRN------GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTIN 215
G A + G V GS T G N+T++
Sbjct: 76 LVSRYNSGGYATVSGSSTAPIGSQVCRSGS--------TTGW-----YCGTIQARNQTVS 122
Query: 216 Y--------IQTDAAITFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIPIDYA 260
Y +T G+SGG ++ + G+ S T G +F ++
Sbjct: 123 YPQGTVHSLTRTSVCAEPGDSGGSFIS-GTQAQGVTSGGSGNCRTGGTTFYQEVNPM 178
>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral
protein, hydrolase; 1.70A {Tobacco vein mottling virus}
Length = 241
Score = 46.1 bits (109), Expect = 6e-06
Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 31/205 (15%)
Query: 82 VEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKG 141
+ V +E + + + G GF II N H+ G I T+ G
Sbjct: 14 ISACVCLLENSSDGHSERL-FGIGF----GPYIIANQHLFRRNNGELTIKTMH-GEFAVA 67
Query: 142 AVEALDV----ECDLAIIRC--NFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTF 195
L + D+ +I+ +FP P + K + V + + N
Sbjct: 68 NSTQLQMKPVEGRDIIVIKMAKDFP---PFPQKLKFRQPTIKDRVCMVST-----NFQQK 119
Query: 196 GIISNKQRSSETLGLNKT---INYIQTDAAITFGNSGGPLVNL-DGEVIGINSMKVTAGI 251
+ S SS + T ++I T G +G PLV++ DG ++GI+S+ T
Sbjct: 120 SVSSLVSESSHIVHKEDTSFWQHWITTKD----GQAGSPLVSIIDGNILGIHSLTHTTNG 175
Query: 252 S--FA-IPIDYAIEFLTNYKRKDKD 273
S F P + +L K+
Sbjct: 176 SNYFVEFPEKFVATYLDAADGWCKN 200
>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine
proteinase, chymotrypsin-like proteinase, collapsed O
HOLE, transferase; 2.00A {Equine arteritis virus} SCOP:
b.47.1.3
Length = 198
Score = 44.0 bits (103), Expect = 2e-05
Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 35/156 (22%)
Query: 92 VIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECD 151
V + GS + ++ +++T +HVV A + + D D
Sbjct: 6 VGFVAGSSYGTGSVWTRNNEVVVLTASHVVGRANMA--TLKIGDAMLTLT----FKKNGD 59
Query: 152 LAIIRC---NFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETL 208
A P N+P L + + E
Sbjct: 60 FAEAVTTQSELPGNWPQLHFAQPTTGP------------------ASWCTAT---GDEEG 98
Query: 209 GLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINS 244
L+ + T + G+SG +V V+G+++
Sbjct: 99 LLSGEVCLAWTTS----GDSGSAVVQ-GDAVVGVHT 129
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta
barrel, chymotrypsin-type cystein protease, enzyme-
peptide complex; 1.80A {Tobacco etch virus} SCOP:
b.47.1.3 PDB: 1lvb_A 1q31_A
Length = 229
Score = 44.1 bits (104), Expect = 2e-05
Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 30/197 (15%)
Query: 82 VEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKG 141
+ ++ ++ + ++ G GF IITN H+ G ++ +L G
Sbjct: 22 ISSTICHLTNESDGHTTSL-YGIGF----GPFIITNKHLFRRNNGTLLVQSLH-GVFKVK 75
Query: 142 AVEALDV----ECDLAIIRC--NFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTF 195
L D+ IIR +FP P + K + + E + + + N T
Sbjct: 76 NTTTLQQHLIDGRDMIIIRMPKDFP---PFPQKLKFREPQREERICLVTT-----NFQTK 127
Query: 196 GIISNKQRSSETLGLNKTINY---IQTDAAITFGNSGGPLVNL-DGEVIGINSMKVTAGI 251
+ S +S T + I + IQT G G PLV+ DG ++GI+S
Sbjct: 128 SMSSMVSDTSCTFPSSDGIFWKHWIQTKD----GQCGSPLVSTRDGFIVGIHSASNFTNT 183
Query: 252 S--FAIPIDYAIEFLTN 266
+ F +E LTN
Sbjct: 184 NNYFTSVPKNFMELLTN 200
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 41.5 bits (98), Expect = 2e-05
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRLV 357
VL+ V A AG+ + D II++N ++ LEVV+L+
Sbjct: 30 IVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSS----HLEVVKLI 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 4e-05
Identities = 65/407 (15%), Positives = 121/407 (29%), Gaps = 103/407 (25%)
Query: 4 TFARYVKILSIKNPVLTKTFVSASVGGVLFGVYLHNRHQ--WPLINVILPSIDAAQRIDI 61
+ L N V K VS R Q L +L + A+ + I
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVS--------------RLQPYLKLRQALL-ELRPAKNVLI 155
Query: 62 D--------------YKPPSLRSQFNF------------VADVLENVEKSVVNIELVIPY 95
D ++ + +F VLE ++K + I+ P
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID---PN 212
Query: 96 YRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECD-LAI 154
+ + S + ++ KP ++ L ++ A A ++ C L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNAFNLSCKILLT 271
Query: 155 IRCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTI 214
R F L I + LT E L +
Sbjct: 272 TR--FKQVTDFLSAATTTHIS----LDHHSMTLT---------------PDEVKSL--LL 308
Query: 215 NYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDKDR 274
Y+ +L EV+ N ++ + I+ D + N+K + D+
Sbjct: 309 KYLDCRPQ-----------DLPREVLTTNPRRL-SIIA-ESIRDGLATW-DNWKHVNCDK 354
Query: 275 TITHKKYIGITMLTLNEKLIEQL-------RRDRHIPYDLTHGVLIWRVM--YNSPAYLA 325
I ++ L ++ HIP L LIW + + +
Sbjct: 355 ---LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL--SLIWFDVIKSDVMVVVN 409
Query: 326 GLHQEDIIIELNKKPCHSAKDIYAALEVVRLVNFQFSHFKHSFLVES 372
LH+ ++ + K+ S IY LE+ + +++ H +V+
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIY--LELKVKLENEYAL--HRSIVDH 452
Score = 36.0 bits (82), Expect = 0.020
Identities = 23/166 (13%), Positives = 52/166 (31%), Gaps = 51/166 (30%)
Query: 254 AIPIDYAIEFL-TNYKRKDKDRTITHKKYIG----------------ITMLTLNEKLIEQ 296
+ I+Y +FL + K + + ++ + YI ++ L KL +
Sbjct: 86 VLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 297 LRRDRHIPYDLTHG-------VLIWRV--------MYNSPAY---LAGLHQEDIIIELNK 338
L R L G + V + + L + + ++E+ +
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 339 KPCH-----------SAKDIYAALEVV--RLVNFQFSH-FKHSFLV 370
K + + +I + + L S +++ LV
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 40.5 bits (95), Expect = 6e-05
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRLV 357
V + V PA AGL Q D +++LN++P K +E+ +
Sbjct: 36 SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK----CVELAHEI 80
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 40.3 bits (95), Expect = 7e-05
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRLV 357
G I V PA LAGL ED+IIE+N Y +VV +
Sbjct: 28 GSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEP--YE--KVVDRI 71
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 8e-05
Identities = 31/180 (17%), Positives = 50/180 (27%), Gaps = 72/180 (40%)
Query: 206 ETLGLNKTINYIQTDA----AITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAI 261
+T G +I I + I FG G G+ I N + F +D +
Sbjct: 1655 DTYGF--SILDIVINNPVNLTIHFG---GE----KGKRIRENYSAMI----FETIVDGKL 1701
Query: 262 EFLTNYKRKDKDRTITHKKYI-----GITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRV 316
+ +K ++ T Y G+ T Q P +
Sbjct: 1702 KTEKIFKEINEHST----SYTFRSEKGLLSATQFT----Q-------PALTLMEKAAFED 1746
Query: 317 M-----YNSPAYLAGLHQEDIIIELNKKPCHSAKDI--YAAL----------EVVRLVNF 359
+ + A AG HS + YAAL +V +V +
Sbjct: 1747 LKSKGLIPADATFAG---------------HS---LGEYAALASLADVMSIESLVEVVFY 1788
Score = 42.0 bits (98), Expect = 4e-04
Identities = 50/270 (18%), Positives = 92/270 (34%), Gaps = 68/270 (25%)
Query: 21 KTFVSASVGGV--LFGVYLHNRHQWPLINVILPSIDAAQRIDIDYKPPS--LRSQFNFVA 76
++F + + LF + + +P + LP ++ + PS L ++
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTS--LPPSILEDSLENNEGVPSPMLS-----IS 342
Query: 77 DV-LENVEKSV--VNIELVIPYYRQTMSNGSGFIATDDGLIIT-NAHVVSGKPGA--QII 130
++ E V+ V N L P +Q I+ L+ VVSG P + +
Sbjct: 343 NLTQEQVQDYVNKTNSHL--PAGKQV------EIS----LVNGAKNLVVSGPPQSLYGLN 390
Query: 131 VTL-----PDG---SKHKGAVEALDVECDLAIIRCNFPNNY--PALKLGKAADIRNGEFV 180
+TL P G S+ + L + F ++ PA L D+
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN-KDLVKNNVS 449
Query: 181 IAMGSPL--TLNNTNTFGIISNKQRSSETLG-------LNKTINYIQTDAA-----ITFG 226
+ + +T G S+ + S ++ + + + T + FG
Sbjct: 450 FN-AKDIQIPVYDTFD-G--SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 227 ---NSG-GPLV--NLDGEVIGINSMKVTAG 250
SG G L N DG + + + AG
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRV----IVAG 531
Score = 31.9 bits (72), Expect = 0.36
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 47/106 (44%)
Query: 75 VADVL--ENVEKSVVNIELVIPYYR-QTMSN----------GSGFIATDDGLIITN---- 117
+ADV+ E++ +E+V +YR TM G IA + G + +
Sbjct: 1773 LADVMSIESL------VEVV--FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 118 --AHVV------SGK---------PGAQIIVTLPDGSKHKGAVEAL 146
+VV +G Q + + A++ +
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQYVA-----AGDLRALDTV 1865
Score = 28.5 bits (63), Expect = 4.3
Identities = 57/311 (18%), Positives = 90/311 (28%), Gaps = 118/311 (37%)
Query: 68 LRSQFNFVADVLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGA 127
L DV + +++ T GF D +V P
Sbjct: 1635 LYKTSKAAQDVWNRADN----------HFKDTY----GFSILD---------IVINNPVN 1671
Query: 128 QIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPL 187
I G K K IR NY A+ D + I +
Sbjct: 1672 LTI--HFGGEKGKR-------------IR----ENYSAMIFETIVDGKLKTEKIF--KEI 1710
Query: 188 TLNNTN-TFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNL-DGEVI----G 241
++T+ TF RS + L L+ T T A+T L+ E +
Sbjct: 1711 NEHSTSYTF-------RSEKGL-LSATQF---TQPALT-------LMEKAAFEDLKSKGL 1752
Query: 242 INSMKVTAG---------ISFA--IPIDYAIEFLTNYKRKDKDRTITHKKYIGITMLTLN 290
I + AG S A + I+ +E + + R G+TM
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSIESLVEVV--FYR-------------GMTMQVAV 1797
Query: 291 EKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDI--IIELNKKPCHSAKDIY 348
+ E R + Y + + RV A QE + ++E K
Sbjct: 1798 PR-DELGRSN----YGMI-AINPGRVA-------ASFSQEALQYVVERVGK--------- 1835
Query: 349 AALEVVRLVNF 359
+V +VN+
Sbjct: 1836 RTGWLVEIVNY 1846
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 39.9 bits (94), Expect = 9e-05
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRLV 357
++ VM SPA GL D I+ +N+ A +VV+L+
Sbjct: 24 PCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKAS----HEDVVKLI 67
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 39.2 bits (92), Expect = 2e-04
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
G +I + SPA AGL D+++ +N K +
Sbjct: 30 GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEAL 64
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 38.9 bits (91), Expect = 2e-04
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRLV 357
V + V PA AGL Q D +++LN++P K +E+ +
Sbjct: 24 SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK----CVELAHEI 68
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 40.9 bits (95), Expect = 2e-04
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
G I V +SPA +GL +D I+E+N
Sbjct: 33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 39.0 bits (91), Expect = 3e-04
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRLV 357
V + + + A LAG + D I+ + C EV++L+
Sbjct: 37 PVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLT----VSEVMKLL 80
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 39.1 bits (91), Expect = 3e-04
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
G I V +SPA +GL +D I+E+N
Sbjct: 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 38.5 bits (90), Expect = 4e-04
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
G +I + SPA AGL D+++ +N K +
Sbjct: 31 GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEAL 65
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 38.0 bits (89), Expect = 4e-04
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKD 346
+G+ V+ N PA + D II + K SA+
Sbjct: 1 NGIYASSVVENMPAK-GKIEVGDKIISADGKNYQSAEK 37
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 37.7 bits (88), Expect = 6e-04
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAAL 351
+ GV + V+ N PA L D I ++ +P ++++ I + +
Sbjct: 2 NEAKGVYVMSVLPNMPAA-GRLEAGDRIAAIDGQPINTSEQIVSYV 46
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 37.3 bits (87), Expect = 9e-04
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
G I V +SPA +GL +D I+E+N
Sbjct: 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 36.9 bits (86), Expect = 0.001
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 297 LRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRL 356
L D+ P G I V SPA +GL +D +IE+N + + +A EVV
Sbjct: 21 LHSDKSRP-----GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLR--HA--EVVAS 71
Query: 357 V 357
+
Sbjct: 72 I 72
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 37.4 bits (87), Expect = 0.001
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRLV 357
GV + + A AG+ +D +IE+N + A EVV V
Sbjct: 32 KGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDAS----HEEVVEKV 76
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 37.0 bits (86), Expect = 0.001
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 308 THGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
T G LI + SPA AGL D ++ +N
Sbjct: 25 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKE 61
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 38.9 bits (90), Expect = 0.001
Identities = 26/158 (16%), Positives = 41/158 (25%), Gaps = 30/158 (18%)
Query: 113 LIITNAHVVSGKPGAQIIVTL-----------PDGS-------KHKGAVEALDVECDLAI 154
+ T H + G Q G D E D A
Sbjct: 35 TVATAGHCLHDGNGGQFARNFVFAPAYDYGESEHGVWAAEELVTSAEWANRGDFEHDYAF 94
Query: 155 IR-CNFPNNYPALKLGKAADIRN----GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLG 209
++G A+ I G++ A G P + +++ +G
Sbjct: 95 AVLETKGGTTVQQQVGTASPIAFNQPRGQYYSAYGYPAAAPFNGQELHSCHGTATNDPMG 154
Query: 210 LNKTINYIQTDAAITFGNSGGPLV---NLDGEVIGINS 244
+ +T G+SGGP G NS
Sbjct: 155 ----SSTQGIPCNMTGGSSGGPWFLGNGTGGAQNSTNS 188
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 36.5 bits (85), Expect = 0.001
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 297 LRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
LR ++ + G +W V PA AG+ D ++ + +
Sbjct: 20 LREEKGLDGR--PGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGL 65
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 37.1 bits (86), Expect = 0.002
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 308 THGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
T G LI + SPA AGL D ++ +N
Sbjct: 37 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKE 73
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 37.1 bits (86), Expect = 0.002
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 298 RRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALE 352
R + + GV I V+ SPA L +I +N P + AAL+
Sbjct: 14 RENLYFQGHQPDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLTTYSAALK 67
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 36.8 bits (85), Expect = 0.002
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELN 337
+ + +V PA+ AGL D II++N
Sbjct: 61 DTIFVKQVKEGGPAFEAGLCTGDRIIKVN 89
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 35.8 bits (83), Expect = 0.003
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELN 337
+ + RV +SPA LAGL D I +N
Sbjct: 34 RVEMVTFVARVHESSPAQLAGLTPGDTIASVN 65
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 35.1 bits (81), Expect = 0.005
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 290 NEKLIEQLRRDRHIPYDLT-HGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIY 348
N + R D + +I +M A G+ IIE+N + +
Sbjct: 11 NVTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPH-- 68
Query: 349 AALEVVRLV 357
++V ++
Sbjct: 69 --EKIVHIL 75
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 35.3 bits (81), Expect = 0.005
Identities = 8/65 (12%), Positives = 20/65 (30%)
Query: 291 EKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAA 350
+++ + +R + D G + GL D+ + LN +
Sbjct: 19 QEIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTL 78
Query: 351 LEVVR 355
+ +
Sbjct: 79 FQSMN 83
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 34.7 bits (80), Expect = 0.007
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 308 THGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
T ++W V SPA AGL D+I +N +
Sbjct: 33 TVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGL 69
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 34.8 bits (80), Expect = 0.008
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELN 337
+ V A+ AGL D +IE+N
Sbjct: 46 LQYLESVDEGGVAWRAGLRMGDFLIEVN 73
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 35.3 bits (81), Expect = 0.008
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELN 337
+ V A+ AGL D +IE+N
Sbjct: 66 LQYLESVDEGGVAWRAGLRMGDFLIEVN 93
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 34.8 bits (80), Expect = 0.009
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
LI ++ +SPA+ AGL D++ +N
Sbjct: 49 FTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGF 83
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 34.8 bits (80), Expect = 0.009
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRLV 357
V + + A +AG + D I+ + C EV++L+
Sbjct: 45 PVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLT----LSEVMKLL 88
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 34.2 bits (79), Expect = 0.010
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAAL 351
GV + V + PA LH D+I E++ S+++ +
Sbjct: 8 GVYVMSVKDDVPAA-DVLHAGDLITEIDGNAFKSSQEFIDYI 48
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 33.8 bits (78), Expect = 0.012
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
G I V SPA AGL D ++E+N +
Sbjct: 28 GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKE 62
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 33.9 bits (78), Expect = 0.013
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELN 337
G+ + V SPA + L +D II +N
Sbjct: 29 GIFVASVEAGSPAEFSQLQVDDEIIAIN 56
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 35.6 bits (81), Expect = 0.023
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELN 337
G+ + V+ +SPA GL + D I+ +N
Sbjct: 31 VGIFVAGVLEDSPAAKEGLEEGDQILRVN 59
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 32.9 bits (75), Expect = 0.024
Identities = 8/65 (12%), Positives = 20/65 (30%)
Query: 291 EKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAA 350
+++ + +R + D G + GL D+ + LN +
Sbjct: 1 QEIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTL 60
Query: 351 LEVVR 355
+ +
Sbjct: 61 FQSMN 65
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 33.1 bits (76), Expect = 0.025
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
D + I R+ A AG+ D ++ ++ + S
Sbjct: 24 DFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSL 62
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 33.5 bits (77), Expect = 0.025
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELN 337
+ V+ A AG+ + D I+E+N
Sbjct: 44 LQHVSAVLPGGAADRAGVRKGDRILEVN 71
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 33.1 bits (76), Expect = 0.030
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
D ++I R+ S A A L D+I+ ++ S
Sbjct: 26 DFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 64
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 33.1 bits (76), Expect = 0.034
Identities = 5/39 (12%), Positives = 13/39 (33%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
D + I + A A + D+++ ++
Sbjct: 26 DFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGM 64
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 32.8 bits (75), Expect = 0.034
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 316 VMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALE 352
V NS A AGL D I+ ++ +P +
Sbjct: 11 VQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVMLVR 47
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 35.0 bits (79), Expect = 0.038
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALE 352
G+ + V ++ AY AGL D II ++ + + + LE
Sbjct: 496 QGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQA-TEQSVKRILE 538
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 32.2 bits (73), Expect = 0.049
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 316 VMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAAL 351
+ NS A A + + ++ + L
Sbjct: 9 IAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQL 44
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 31.8 bits (73), Expect = 0.054
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
D + I R+ S A + L Q D+++ ++ +
Sbjct: 22 DFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 31.9 bits (73), Expect = 0.058
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
D +++ +V A A L DII+ +N + +
Sbjct: 27 DFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENM 65
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 33.5 bits (76), Expect = 0.061
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 309 HGVLIWRVMYNSPAYLAGLH-QEDIIIELNKKPCHSAKDIYAALE 352
+ + V NSPA LAGL D II + + ++D+++ +E
Sbjct: 112 NVWHVLEVESNSPAALAGLRPHSDYIIGAD-TVMNESEDLFSLIE 155
Score = 33.5 bits (76), Expect = 0.072
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 303 IPYDLTHGVLIWRVMYNSPAYLAGLHQE-DIIIELNKKPCHSAKDIYAAL 351
IP T G + RV NSP + AGL D I+ +N + D L
Sbjct: 10 IPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDL 59
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 31.9 bits (73), Expect = 0.064
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
GV + + P L GL D ++++N
Sbjct: 33 GVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDF 67
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 31.6 bits (72), Expect = 0.072
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
D + I RV S A LA L D+I ++ + +
Sbjct: 24 DFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNM 62
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 31.5 bits (72), Expect = 0.083
Identities = 5/39 (12%), Positives = 13/39 (33%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
D + I + A A + D+++ ++
Sbjct: 24 DFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGM 62
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 31.5 bits (72), Expect = 0.086
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
D +++ +V A A L DII+ +N +
Sbjct: 23 DFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM 61
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 33.7 bits (76), Expect = 0.094
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELN 337
G+ + V+ +SPA GL + D I+ +N
Sbjct: 23 VGIFVAGVLEDSPAAKEGLEEGDQILRVN 51
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 31.5 bits (72), Expect = 0.10
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
D + + I RV S A LA L D+I +N +
Sbjct: 29 DFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM 67
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 31.6 bits (72), Expect = 0.11
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
G+ I +V+ +S A+ AGL + D ++ +N
Sbjct: 38 ASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDI 76
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 31.5 bits (71), Expect = 0.12
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 308 THGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
+ + V A GL D I+E+N + +
Sbjct: 43 IRRLYVNSVKETGLASKKGLKAGDEILEINNRAADAL 79
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 31.2 bits (71), Expect = 0.13
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
G+ + V S A GL D I+ +N K
Sbjct: 36 GIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARV 70
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 31.7 bits (72), Expect = 0.14
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
G+ I V S A +GL D I+E+N + +
Sbjct: 47 GIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNI 81
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 31.7 bits (72), Expect = 0.19
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELN 337
G+ + V NSPA L GL D ++++N
Sbjct: 28 GIFVQLVQANSPASLVGLRFGDQVLQIN 55
Score = 29.0 bits (65), Expect = 1.4
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 315 RVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAA 350
++ +S A GL E I E+N + KD A
Sbjct: 113 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIA 148
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 30.8 bits (70), Expect = 0.20
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
G+ + +V S A AGL D I E+N S
Sbjct: 37 GIFVSKVEEGSSAERAGLCVGDKITEVNGLSLEST 71
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 32.3 bits (72), Expect = 0.23
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 8/127 (6%)
Query: 122 SGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVI 181
SG G + GS K D L + + G +N I
Sbjct: 88 SGANGDGSMSQTQSGSTVKATYATSDFT--LLELNNAANPAFNLFWAGWDRRDQNYPGAI 145
Query: 182 AM----GSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLDG 237
A+ + ++N+ + + + + + G+SG P+ + +
Sbjct: 146 AIHHPNVAEKRISNSTSPTSFVA--WGGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSPEK 203
Query: 238 EVIGINS 244
V+G
Sbjct: 204 RVLGQLH 210
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 30.9 bits (70), Expect = 0.24
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELN 337
G+ + +V S A+ AGL D ++E N
Sbjct: 42 GGIYVSKVTVGSIAHQAGLEYGDQLLEFN 70
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 31.4 bits (72), Expect = 0.31
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 226 GNSGGPLVNLDGEVIGINS 244
G+SGGP+V+ +IG S
Sbjct: 178 GDSGGPIVDSSNTLIGAVS 196
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 29.6 bits (67), Expect = 0.36
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 313 IWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKD 346
I ++ +S A GL E I E+N + KD
Sbjct: 27 ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKD 60
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 30.1 bits (68), Expect = 0.38
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELN 337
G+ I V S + GL D I+E+N
Sbjct: 42 GIFISHVKPGSLSAEVGLEIGDQIVEVN 69
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 30.0 bits (68), Expect = 0.41
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 299 RDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELN 337
+ G+ I RV PA AG+ D ++E+N
Sbjct: 36 KGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 74
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 29.6 bits (67), Expect = 0.42
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 299 RDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELN 337
+ G+ I RV PA AG+ D ++E+N
Sbjct: 24 KGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 62
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 31.1 bits (70), Expect = 0.44
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
G+ I ++ A GL D I+ +N S
Sbjct: 111 GLFISHLIKGGQADSVGLQVGDEIVRINGYSISSC 145
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 30.2 bits (68), Expect = 0.45
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELN 337
G+ + V+ +SPA GL + D I+ +N
Sbjct: 51 VGIFVAGVLEDSPAAKEGLEEGDQILRVN 79
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 30.4 bits (68), Expect = 0.46
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA--KDIYAAL-----EVVRLV 357
G+ + RV PA +AGL D I+++N L EVVRL+
Sbjct: 65 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 119
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 30.1 bits (68), Expect = 0.46
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 294 IEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAG-LHQEDIIIELNKKPCHSA 344
I +T I R++ SPA L D I+ +N + +
Sbjct: 28 IISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINM 79
>2fp7_B Serine protease NS3; flavivirus, NS3 protease, NS2B cofactor; HET:
OAR; 1.68A {West nile virus} SCOP: b.47.1.3
Length = 172
Score = 29.9 bits (67), Expect = 0.73
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 225 FGNSGGPLVNLDGEVIGI--NSMKVTAG 250
G SG P+V+ +G+VIG+ N + + G
Sbjct: 117 TGTSGSPIVDKNGDVIGLYGNGVIMPNG 144
>1ze3_H FIMH protein; soluble domain, ternary complex with chaperone and
pilus subunit; 1.84A {Escherichia coli} SCOP: b.2.3.2
Length = 122
Score = 29.3 bits (66), Expect = 0.77
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 184 GSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGN 227
G+ + NNT + G + S+ +LGL T NY +T +T GN
Sbjct: 72 GTIIPANNTVSLGAVGT---SAVSLGL--TANYARTGGQVTAGN 110
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 30.9 bits (69), Expect = 0.92
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 313 IWRVMYNSPAYLAGLHQE-DIIIELNKKPCHSAKDIYAALE 352
SP + G+ +I +++ + + +IY L
Sbjct: 760 YSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSNIYRVLS 800
>3u1j_B Serine protease NS3; serine protease, ER MEM hydrolase-hydrolase
inhibitor complex; 1.80A {Dengue virus 3} PDB: 3u1i_B
Length = 191
Score = 29.9 bits (67), Expect = 1.0
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 225 FGNSGGPLVNLDGEVIGI 242
G SG P++N +G+V+G+
Sbjct: 141 PGTSGSPIINREGKVVGL 158
>2ggv_B NS3, non-structural protein 3; beta barrel, serine protease, viral
protease, flavivirus, hydrolase; 1.80A {West nile virus}
PDB: 2ijo_B
Length = 185
Score = 29.9 bits (67), Expect = 1.0
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 196 GIISNKQRSSETLGL-NKTINYIQTDAAITFGNSGGPLVNLDGEVIGI 242
+ N Q I + D G SG P+V+ +G+VIG+
Sbjct: 103 RNVKNVQTKPGVFKTPEGEIGAVTLD--FPTGTSGSPIVDKNGDVIGL 148
>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral
protein-prote complex; 1.50A {Dengue virus 2} SCOP:
b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A
Length = 185
Score = 29.5 bits (66), Expect = 1.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 225 FGNSGGPLVNLDGEVIGI 242
G SG P+V+ G+V+G+
Sbjct: 132 PGTSGSPIVDKKGKVVGL 149
>3lkw_A Fusion protein of nonstructural protein 2B and nonstructural
protein 3; viral protease, serine protease, NS3
protease, NS2B cofactor; 2.00A {Dengue virus 1} PDB:
3l6p_A
Length = 236
Score = 30.0 bits (67), Expect = 1.2
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 196 GIISNKQRSSETLGL-NKTINYIQTDAAITFGNSGGPLVNLDGEVIGI 242
N Q + T + I D G +G P+VN +G+++G+
Sbjct: 154 KNPKNVQTAPGTFKTPEGEVGAIALDFK--PGTAGSPIVNREGKIVGL 199
>3e90_B NS3 protease; trypsin-like serine protease, protease inhibitor,
catalytic histidine, induced FIT, ATP-binding, capsid
protein, helicase; HET: NKK; 2.45A {West nile virus}
Length = 198
Score = 29.6 bits (66), Expect = 1.2
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 211 NKTINYIQTDAAITFGNSGGPLVNLDGEVIGI--NSMKVTAG 250
I + D G SG P+V+ +G+VIG+ N + + G
Sbjct: 124 EGEIGAVTLD--FPTGTSGSPIVDKNGDVIGLYGNGVIMPNG 163
>3jwn_H FIMH protein; fimbria, cell adhesion, FIMC, FIMF,FIMG, chaperone,
FI immunoglobulin domain, fimbrium, periplasm, disulfide
bond; 2.69A {Escherichia coli} PDB: 1klf_B* 1qun_B
1kiu_B* 3rfz_A 3mcy_A*
Length = 279
Score = 29.8 bits (66), Expect = 1.3
Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 23/147 (15%)
Query: 95 YYRQTMSNGSGFIATDDGLIITNAHVVSGKP----GAQIIVTLPDGSKHKGAVE-ALDVE 149
RQT + S + N VV + VTLPD + G+V L V
Sbjct: 130 ILRQTNNYNSDDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPD---YPGSVPIPLTVY 186
Query: 150 CD------LAIIRCNFPNNYPALKLGKAADIRNGEFVIAM---GSPLTLNNTNTFGIISN 200
C + + G + + G+ + NNT + G +
Sbjct: 187 CAKSQNLGYYLSGTTADAGNSIFTNTASFSPAQG-VGVQLTRNGTIIPANNTVSLGAVGT 245
Query: 201 KQRSSETLGLNKTINYIQTDAAITFGN 227
S+ +LGL T NY +T +T GN
Sbjct: 246 ---SAVSLGL--TANYARTGGQVTAGN 267
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.5
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 140 KGAVEALDVECDLAIIRCNFPNNYPALKLGKAA 172
K A++ L + L + ++ PAL + KA
Sbjct: 19 KQALKKL--QASLKLYA---DDSAPALAI-KAT 45
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 29.1 bits (66), Expect = 2.0
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 226 GNSGGPLVNLDG--EVIGINSMKVTAGISFAIP 256
G+SGGPL DG V+G+ S V++G+ +P
Sbjct: 189 GDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLP 221
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 29.2 bits (66), Expect = 2.4
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 319 NSPAYLAGLHQEDIIIELNKKP 340
PA AG D+I+ ++
Sbjct: 109 GGPAEKAGARAGDVIVTVDGTA 130
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 29.0 bits (65), Expect = 3.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 311 VLIWRVMYNSPAYLAGLHQEDIIIELNKKP 340
LI V+ SPA AGL + I+ +N
Sbjct: 92 ALISYVVPGSPAEEAGLQRGHWIMMMNGDY 121
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 28.3 bits (64), Expect = 3.1
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 226 GNSGGPLVNLDGEVIGINS 244
G+SGGPLV +G IGI S
Sbjct: 176 GDSGGPLV-ANGAQIGIVS 193
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 28.3 bits (64), Expect = 4.0
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 226 GNSGGPLVNLDGEVIGINS 244
G+SGGPL +G GI S
Sbjct: 176 GDSGGPLN-YNGLTYGITS 193
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 27.9 bits (63), Expect = 4.6
Identities = 5/17 (29%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 226 GNSGGPLVNLDGEVIGI 242
G++G P V ++G+
Sbjct: 181 GDAGDPTVQ-QDTLVGV 196
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 26.5 bits (58), Expect = 5.0
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCH 342
+ + V A GL D I+E+N +
Sbjct: 35 RRLYVNSVKETGLASKKGLKAGDEILEINNRAAD 68
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, ligase; NMR {Homo sapiens}
Length = 88
Score = 26.0 bits (58), Expect = 6.6
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 124 KPGAQIIVTLPDGSKHKG 141
I VTLPDG +
Sbjct: 7 GDSKPIKVTLPDGKQVDA 24
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 27.2 bits (61), Expect = 8.0
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 226 GNSGGPLV-NLDGEVIGINS 244
G+SGGP V + +IG+ S
Sbjct: 178 GDSGGPFVLSDKNLLIGVVS 197
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 27.6 bits (60), Expect = 8.0
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 308 THGVLIWRVMYNSPAYLAGLHQE-DIIIELN 337
G+ I ++ PA L+G ++ D I+ +N
Sbjct: 330 GEGIFISFILAGGPADLSGELRKGDQILSVN 360
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 26.3 bits (58), Expect = 8.0
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 308 THGVLIWRVMYNSPAYLAG-LHQEDIIIELN 337
G+ I R++ A G L D ++E+N
Sbjct: 64 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVN 94
>2otr_A Hypothetical protein HP0892; anti-parallel beta sheet, structural
genomics, unknown funct; NMR {Helicobacter pylori}
Length = 98
Score = 26.0 bits (57), Expect = 8.4
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 257 IDYAIEFLTNYKRKDKDRTITHKKYIGITMLTLNEKLIEQLR-----------RDRHIPY 305
I+ + +F + K K+ Y + L + L + + R+ H+
Sbjct: 4 IETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECHLKP 63
Query: 306 DLTHGVLIWRV 316
DL +L++++
Sbjct: 64 DL---LLVYQI 71
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 27.2 bits (61), Expect = 8.7
Identities = 6/17 (35%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 226 GNSGGPLVNLDGEVIGI 242
G++G P V +G ++G+
Sbjct: 184 GDAGDPAVQ-NGTLVGV 199
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.401
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,823,674
Number of extensions: 367277
Number of successful extensions: 1152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1043
Number of HSP's successfully gapped: 146
Length of query: 375
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 280
Effective length of database: 4,049,298
Effective search space: 1133803440
Effective search space used: 1133803440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)