RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18066
(375 letters)
>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 205
Score = 156 bits (394), Expect = 1e-46
Identities = 103/205 (50%), Positives = 132/205 (64%), Gaps = 7/205 (3%)
Query: 65 PPSLRSQFNFVADVLENVEKSVVNIELVIPY----YRQTMSNGSGFIATDDGLIITNAHV 120
P S RSQ+NF+ADV+E +VV IE++ + +SNGSGF+ DGLI+TNAHV
Sbjct: 2 PASPRSQYNFIADVVEKTAPAVVYIEILDRHPFLGREVPISNGSGFVVAADGLIVTNAHV 61
Query: 121 VSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFV 180
V+ + ++ + D + + I P L LG++AD+R GEFV
Sbjct: 62 VADRRRVRVRLLSGDTYEAVVTAVDPVADIATLRI--QTKEPLPTLPLGRSADVRQGEFV 119
Query: 181 IAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT-INYIQTDAAITFGNSGGPLVNLDGEV 239
+AMGSP L NT T GI+S+ QR + LGL +T + YIQTDAAI FGN+GGPLVNLDGEV
Sbjct: 120 VAMGSPFALQNTITSGIVSSAQRPARDLGLPQTNVEYIQTDAAIDFGNAGGPLVNLDGEV 179
Query: 240 IGINSMKVTAGISFAIPIDYAIEFL 264
IG+N+MKVTAGISFAIP D EFL
Sbjct: 180 IGVNTMKVTAGISFAIPSDRLREFL 204
>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 221
Score = 129 bits (323), Expect = 5e-36
Identities = 75/221 (33%), Positives = 105/221 (47%), Gaps = 26/221 (11%)
Query: 75 VADVLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSG-------KPGA 127
V V V SVV +E + GSG I + +GLI+TN HV++ P
Sbjct: 3 VEQVAAKVVPSVVMLE---TDLGRQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPP 59
Query: 128 QIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPL 187
+ VT DG V D D+A++R + + LG ++D+R G+ V+A+GSPL
Sbjct: 60 KTTVTFSDGRTAPFTVVGADPTSDIAVVRVQGVSGLTPISLGSSSDLRVGQPVLAIGSPL 119
Query: 188 TLNNTNTFGIISNKQRSSETLGLNKT----INYIQTDAAITFGNSGGPLVNLDGEVIGIN 243
L T T GI+S R T G ++ IQTDAAI GNSGG LVN++ +++G+N
Sbjct: 120 GLEGTVTTGIVSALNRPVSTTGEAGNQNTVLDAIQTDAAINPGNSGGALVNMNAQLVGVN 179
Query: 244 SMKVTA------------GISFAIPIDYAIEFLTNYKRKDK 272
S T G+ FAIP+D A K
Sbjct: 180 SAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTGK 220
>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus,
strain k1 [TaxId: 1911]}
Length = 185
Score = 111 bits (277), Expect = 8e-30
Identities = 31/171 (18%), Positives = 50/171 (29%), Gaps = 16/171 (9%)
Query: 101 SNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFP 160
S G + +T H G + + D I+R
Sbjct: 15 SLGFNVRSGSTYYFLTAGHCTDG--ATTWWANSARTTVLGTTSGSSFPNNDYGIVRYTNT 72
Query: 161 N-----NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTIN 215
+ AA+ G V GS G ++ + G +
Sbjct: 73 TIPKDGTVGGQDITSAANATVGMAVTRRGSTTG----THSGSVTALNATVNYGGGDVVYG 128
Query: 216 YIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIE 262
I+T+ G+SGGPL + IG+ S G +F P+ A+
Sbjct: 129 MIRTNVCAEPGDSGGPLYS-GTRAIGLTSGGSGNCSSGGTTFFQPVTEALS 178
>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain
{Thermotoga maritima [TaxId: 2336]}
Length = 228
Score = 107 bits (268), Expect = 5e-28
Identities = 81/222 (36%), Positives = 115/222 (51%), Gaps = 32/222 (14%)
Query: 73 NFVADVLENVEKSVVNI------------------------ELVIPYYRQTMSNGSGFIA 108
+ + +V+E +VV I EL + RQ S GSGFI
Sbjct: 4 SPIVNVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFIF 63
Query: 109 TDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFPN-NYPALK 167
+G I+TN HVV G I VT+ DGSK+ D E D+A+I+ + +P L+
Sbjct: 64 DPEGYILTNYHVVGGAD--NITVTMLDGSKYDAEYIGGDEELDIAVIKIKASDKKFPYLE 121
Query: 168 LGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNK-QRSSETLGLNKTINYIQTDAAITFG 226
G + ++ GE+ IA+G+PL +T T G++S +R + G + IQTDAAI G
Sbjct: 122 FGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYVGLIQTDAAINPG 181
Query: 227 NSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIEFL 264
NSGGPL+N+ GEVIGIN+ V + FAIPI+ +FL
Sbjct: 182 NSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFL 223
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic
domain {Escherichia coli [TaxId: 562]}
Length = 249
Score = 106 bits (264), Expect = 2e-27
Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 97 RQTMSNGSGFIAT-DDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAII 155
++ M+ GSG I D G ++TN HVV ++ ++ K + D D+A+I
Sbjct: 72 QKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGK--DPRSDIALI 129
Query: 156 RCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTIN 215
+ P N A+K+ + +R G++ +A+G+P L T T GI+S RS N
Sbjct: 130 QIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAE--NYEN 187
Query: 216 YIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRK 270
+IQTDAAI GN+GG LVNL+GE+IGIN+ + GI FAIP + +
Sbjct: 188 FIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEY 247
Query: 271 DK 272
+
Sbjct: 248 GQ 249
>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C)
{Foot-and-mouth disease virus FMDV [TaxId: 12110]}
Length = 199
Score = 104 bits (261), Expect = 3e-27
Identities = 24/192 (12%), Positives = 62/192 (32%), Gaps = 13/192 (6%)
Query: 77 DVLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGK-----PGAQIIV 131
D+ + V + +EL + +T++ ++ G +
Sbjct: 1 DLQKMVMGNTKPVELNLD--GKTVAICCATGVFGTAYLVPRHLFAEKYDKIMLDGRAMTD 58
Query: 132 TLPDGSKHKGAVEALDVECDLAIIRCNFPNNYP--ALKLGKAADIRNGEFVIAMGSPLTL 189
+ + + V+ D+ D A++ + N A ++ G V+ + + +
Sbjct: 59 SDYRVFEFEIKVKGQDMLSDAALMVLHRGNKVRDITKHFRDTARMKKGTPVVGVVNNADV 118
Query: 190 NNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLV---NLDGEVIGINSMK 246
G + ++ + AA G +GG ++ D ++G +S
Sbjct: 119 GRLIFSGEALTYKDIVVSMDGDTMPGLFAYKAATRAGYAGGAVLAKDGADTFIVGTHSA- 177
Query: 247 VTAGISFAIPID 258
G+ + +
Sbjct: 178 GGNGVGYCSCVS 189
>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1
[TaxId: 1911]}
Length = 181
Score = 103 bits (258), Expect = 5e-27
Identities = 30/167 (17%), Positives = 49/167 (29%), Gaps = 12/167 (7%)
Query: 101 SNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFP 160
S G +T H + A + G+ + + A
Sbjct: 15 SLGFNVSVNGVAHALTAGHCTNI--SASWSIGTRTGTSFPNNDYGIIRHSNPAAADGRVY 72
Query: 161 N-NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQT 219
N + A + G+ V GS L G ++ + IQT
Sbjct: 73 LYNGSYQDITTAGNAFVGQAVQRSGSTTGL----RSGSVTGLNATVNYGSSGIVYGMIQT 128
Query: 220 DAAITFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIPIDYAIE 262
+ G+SGG L +G+ S T G +F P+ A+
Sbjct: 129 NVCAQPGDSGGSLFA-GSTALGLTSGGSGNCRTGGTTFYQPVTEALS 174
>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus
[TaxId: 1280]}
Length = 246
Score = 105 bits (262), Expect = 5e-27
Identities = 39/235 (16%), Positives = 65/235 (27%), Gaps = 48/235 (20%)
Query: 65 PPSLRSQFNFVADVLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGK 124
PP+ + + + D + SV + + + + +G + I+TN HV
Sbjct: 18 PPTDKELYTHITDNARSPYNSVGTVFV------KGSTLATGVL-IGKNTIVTNYHVAREA 70
Query: 125 PGAQIIVTLPDGSKHKGAVE-----------------ALDVECDLAIIRCNFPNNY---- 163
+ DLAII+
Sbjct: 71 AKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLKPNEKGESAG 130
Query: 164 ---PALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTD 220
+ DI G+ +G P + + + + N Q
Sbjct: 131 DLIQPANIPDHIDIAKGDKYSLLGYPYNYSAYSLYQ------------SQIEMFNDSQYF 178
Query: 221 AAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRK 270
GNSG + NL GE+IGI+S K G+ F I +
Sbjct: 179 GYTEVGNSGSGIFNLKGELIGIHSGKGGQHNLPIGVFFNRKISSLYSVDNTFGDT 233
>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter
enzymogenes, 495 [TaxId: 69]}
Length = 198
Score = 95.3 bits (236), Expect = 9e-24
Identities = 26/170 (15%), Positives = 45/170 (26%), Gaps = 14/170 (8%)
Query: 101 SNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECDLAIIRCNFP 160
S G +T H + A + V D A +
Sbjct: 18 SVGFSVTRGATKGFVTAGHCGTV--NATARIGGAVVGTFAARV---FPGNDRAWVSLTSA 72
Query: 161 NN-YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTI--NYI 217
P + G + G A+G+ + + T + T +
Sbjct: 73 QTLLPRVANGSSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGAVRGLT 132
Query: 218 QTDAAITFGNSGGPLVNLDGEVIGINSMKVTA------GISFAIPIDYAI 261
Q +A + G+SGG + G+ G+ S GI +
Sbjct: 133 QGNACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGIPASQRSSLFE 182
>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A,
NIA) {Tobacco etch virus, TEV [TaxId: 12227]}
Length = 219
Score = 95.2 bits (236), Expect = 2e-23
Identities = 32/209 (15%), Positives = 68/209 (32%), Gaps = 21/209 (10%)
Query: 79 LENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTLPDGSK 138
+ ++ ++ S + IITN H+ G ++V G
Sbjct: 9 YNPISSTICHLT-----NESDGHTTSLYGIGFGPFIITNKHLFRRNNG-TLLVQSLHGVF 62
Query: 139 HKGAVEALDV----ECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNT 194
L D+ IIR + P + K + + E + + + T
Sbjct: 63 KVKNTTTLQQHLIDGRDMIIIRMP-KDFPPFPQKLKFREPQREERICLVTTN-----FQT 116
Query: 195 FGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNL-DGEVIGINSMKVTA-GIS 252
+ S +S T + + + G G PLV+ DG ++GI+S +
Sbjct: 117 KSMSSMVSDTSCTFPSSDG-IFWKHWIQTKDGQCGSPLVSTRDGFIVGIHSASNFTNTNN 175
Query: 253 FAIPIDYAIEFLTNYKRKDKDRTITHKKY 281
+ + F+ ++ + ++ +
Sbjct: 176 YFTSVP--KNFMELLTNQEAQQWVSGWRL 202
>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A
{Staphylococcus aureus [TaxId: 1280]}
Length = 242
Score = 88.9 bits (219), Expect = 5e-21
Identities = 37/228 (16%), Positives = 78/228 (34%), Gaps = 42/228 (18%)
Query: 69 RSQFNFVADVLENVEKSVVNI---ELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKP 125
+ FN ++ V++ + + + ++ +G + ++TN H+
Sbjct: 20 VNAFNLPKELFSKVDEKDRQKYPYNTIGNVFVKGQTSATGVL-IGKNTVLTNRHIAKFAN 78
Query: 126 GAQIIVTLPDGSKHKGAVEAL----------------DVECDLAIIR-------CNFPNN 162
G V+ DLA+IR + +
Sbjct: 79 GDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFGAGVDLALIRLKPDQNGVSLGDK 138
Query: 163 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAA 222
K+G + D+++G+ + +G P Q + L ++
Sbjct: 139 ISPAKIGTSNDLKDGDKLELIGYPFDHKVN---------QMHRSEIELTTLSRGLRYYGF 189
Query: 223 ITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPI-DYAIEFL 264
GNSG + N +GE++GI+S KV+ I++ + I +Y +
Sbjct: 190 TVPGNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIGNYVKRII 237
>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic
domain {Escherichia coli [TaxId: 562]}
Length = 210
Score = 86.8 bits (213), Expect = 2e-20
Identities = 68/209 (32%), Positives = 95/209 (45%), Gaps = 17/209 (8%)
Query: 75 VADVLENVEKSVVNIELVI-----PYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQI 129
+ +VVN+ + + GSG I G IITN HV++ QI
Sbjct: 5 YNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDAD--QI 62
Query: 130 IVTLPDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAADIRNGEFVIAMGSPLTL 189
IV L DG + + D DLA+++ N P + + G+ V+A+G+P L
Sbjct: 63 IVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNL 122
Query: 190 NNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVTA 249
T T GIIS R L N++QTDA+I GNSGG LVN GE++GIN++
Sbjct: 123 GQTITQGIISATGRI--GLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDK 180
Query: 250 --------GISFAIPIDYAIEFLTNYKRK 270
GI FAIP A + + R
Sbjct: 181 SNDGETPEGIGFAIPFQLATKIMDKLIRD 209
>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus
[TaxId: 1280]}
Length = 216
Score = 84.7 bits (208), Expect = 9e-20
Identities = 40/213 (18%), Positives = 67/213 (31%), Gaps = 19/213 (8%)
Query: 65 PPSLRSQFNFVADVLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGK 124
P + R Q + D V I++ P SG + ++TN HVV
Sbjct: 4 PNNDRHQ---ITDTTNGHYAPVTYIQVEAP---TGTFIASGVV-VGKDTLLTNKHVVDAT 56
Query: 125 PGAQIIVTLPDGSKHKGAVEALDVEC----------DLAIIRCNFPNNYPALKLGKAADI 174
G + + ++ DLAI++ + +
Sbjct: 57 HGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPAT 116
Query: 175 RNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVN 234
+ +T+ S+ +Q D + T GNSG P+ N
Sbjct: 117 MSNNAETQTNQNITVTG-YPGDKPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFN 175
Query: 235 LDGEVIGINSMKVTAGISFAIPIDYAI-EFLTN 266
EVIGI+ V + A+ I+ + FL
Sbjct: 176 EKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQ 208
>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces
griseus [TaxId: 1911]}
Length = 187
Score = 77.3 bits (189), Expect = 2e-17
Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 14/178 (7%)
Query: 94 PYYRQTMSNGSGFIATDDG--LIITNAHVVSGKPGAQIIVTLPDGSKHKGAVEALDVECD 151
Y + F T G +T H + + GS D
Sbjct: 6 AIYGGGSRCSAAFNVTKGGARYFVTAGHCTNI---SANWSASSGGSVVGVREGTSFPTND 62
Query: 152 LAIIRCNFPNNYP--ALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLG 209
I+R ++ + + +G + + + T + T+
Sbjct: 63 YGIVRYTDGSSPAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNVTVN 122
Query: 210 LNKTI--NYIQTDAAITFGNSGGPLVNLDGEVIGINSMKV----TAGISFAIPIDYAI 261
N ++T A G+SGG +GI+S TAG + P+ A+
Sbjct: 123 YGDGPVYNMVRTTACSAGGDSGGAHFA-GSVALGIHSGSSGCSGTAGSAIHQPVTEAL 179
>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 63.4 bits (154), Expect = 2e-13
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 279 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNK 338
++YIG+ MLTL+ ++ +L+ D+ HGVLI +V+ SPA+ AGL D+I+ + +
Sbjct: 1 RRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGE 60
Query: 339 KPCHSAKDIYAALEVVRLVNFQ 360
+ +A+D+Y A+ + Q
Sbjct: 61 QMVQNAEDVYEAVRTQSQLAVQ 82
>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius
[TaxId: 1400]}
Length = 215
Score = 55.5 bits (132), Expect = 1e-09
Identities = 26/188 (13%), Positives = 51/188 (27%), Gaps = 24/188 (12%)
Query: 92 VIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKPGAQIIVTL------------------ 133
I Y S+ +G + + I+TN H V
Sbjct: 21 SIAYITFGGSSCTGTLIAPN-KILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANM 79
Query: 134 PDGSKHKGAVEALDVECDLAIIRCNFPNNYPALKLGKAAD-IRNGEFVIAMGSPLTLNNT 192
+ G + + D A+I+ + G + G P +
Sbjct: 80 TEFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRS 139
Query: 193 NTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVTAGIS 252
Q + N GNSG +++ + +++G+++ + G
Sbjct: 140 TG----KVSQWEMSGSVTREDTNLAYYTIDTFSGNSGSAMLDQNQQIVGVHNAGYSNGTI 195
Query: 253 FAIPIDYA 260
P A
Sbjct: 196 NGGPKATA 203
>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human
rhinovirus 2 [TaxId: 12130]}
Length = 180
Score = 45.3 bits (107), Expect = 2e-06
Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 10/151 (6%)
Query: 99 TMSNGSGF-IATDDGLIITNAHVVSGKPGAQIIVTLPD--GSKHKGAVEALDVECDLAII 155
T NG + D ++ H PG +I V ++ ++ ++
Sbjct: 19 TTENGKFTGLGVYDRFVVVPTHAD---PGKEIQVDGITTKVIDSYDLYNKNGIKLEITVL 75
Query: 156 RCNFPNNYPALKLGKAADIRN-GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTI 214
+ + + ++ + + +A+ + G + + L N+T
Sbjct: 76 KLDRNEKFRDIRRYIPNNEDDYPNCNLALLANQPEPTIINVGDVVSYGNI--LLSGNQTA 133
Query: 215 NYIQTDAAITFGNSGGPLVNLDGEVIGINSM 245
++ G GG L G+V+GI+
Sbjct: 134 RMLKYSYPTKSGYCGGVLYK-IGQVLGIHVG 163
>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 88
Score = 41.8 bits (98), Expect = 6e-06
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 308 THGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAAL 351
T G I V+ A AG+ + ++ +++ +P +SA + AA+
Sbjct: 15 TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAV 58
>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal
domains {Escherichia coli [TaxId: 562]}
Length = 88
Score = 41.4 bits (97), Expect = 1e-05
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALE 352
GV++ V +PA GL + D+II N++ + ++ L+
Sbjct: 22 GKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLD 68
>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C,
EpsC {Vibrio cholerae [TaxId: 666]}
Length = 87
Score = 38.0 bits (88), Expect = 2e-04
Identities = 8/62 (12%), Positives = 19/62 (30%)
Query: 291 EKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAA 350
+++ + +R + D G + GL D+ + LN +
Sbjct: 1 QEIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTL 60
Query: 351 LE 352
+
Sbjct: 61 FQ 62
>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 36.7 bits (85), Expect = 4e-04
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAA-----------LEVVRLV 357
V + V PA AGL Q D +++LN++P K + A L V R+V
Sbjct: 18 SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMV 77
>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 103
Score = 34.6 bits (79), Expect = 0.003
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAAL 351
GV I V+ SPA L +I +N P + AAL
Sbjct: 4 GVQIDSVVPGSPAS-KVLTPGLVIESINGMPTSNLTTYSAAL 44
>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 33.6 bits (77), Expect = 0.006
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 308 THGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRLV 357
G I V SPA AGL D ++E+N + +VV +
Sbjct: 26 KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETH----QQVVSRI 71
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 32.9 bits (75), Expect = 0.008
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
G+ + V NSPA L GL D ++++N + C
Sbjct: 26 GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 60
>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 128
Score = 33.4 bits (76), Expect = 0.013
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
+ G+ I V S A +GL D I+E+N + +
Sbjct: 43 EYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNI 81
>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 32.7 bits (74), Expect = 0.017
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
G+ + +V S A+ AGL D ++E N SA
Sbjct: 42 GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSA 77
>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 91
Score = 32.2 bits (73), Expect = 0.020
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 309 HGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKD------IYAALEVVRLV 357
GV + + P L GL D ++++N I + + LV
Sbjct: 32 KGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV 86
>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor
protein-binding family A member 1 (APBA1, X11) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 30.9 bits (70), Expect = 0.035
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAA 350
+I +M A G+ IIE+N + +
Sbjct: 21 NGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIV 61
>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 104
Score = 31.5 bits (71), Expect = 0.046
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 310 GVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
+ V A+ AGL D +IE+N +
Sbjct: 44 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKV 78
>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 30.6 bits (69), Expect = 0.069
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
+ G+ + V S A GL D I+ +N K
Sbjct: 32 EHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARV 70
>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 30.3 bits (68), Expect = 0.083
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 299 RDRHIPYDLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSAKDIYAALEVVRL 356
+ G+ I RV PA AG+ D ++E+N A+ E V
Sbjct: 29 KGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEH----HEAVEA 82
>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 30.3 bits (68), Expect = 0.090
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
G+ I +V+ +S A+ AGL + D ++ +N
Sbjct: 38 ASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDI 76
>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 27.9 bits (62), Expect = 0.61
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 306 DLTHGVLIWRVMYNSPAYLAGLHQEDIIIELNKKPCHSA 344
D + I R+ S A + L Q D+++ ++ +
Sbjct: 22 DFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2
[TaxId: 11060]}
Length = 150
Score = 28.5 bits (64), Expect = 0.78
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 226 GNSGGPLVNLDGEVIGI--NSMKVTAGI 251
G SG P+V+ G+V+G+ N + +G
Sbjct: 116 GTSGSPIVDKKGKVVGLYGNGVVTRSGA 143
>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 91
Score = 27.7 bits (61), Expect = 0.80
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 313 IWRVMYNSPAYLAGLHQE-DIIIELNKKPCHSAKDIY 348
SP + G+ +I +++ + + +IY
Sbjct: 24 YSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSNIY 60
>d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId:
11082]}
Length = 152
Score = 28.1 bits (63), Expect = 0.98
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 226 GNSGGPLVNLDGEVIGI 242
G SG P+V+ +G+VIG+
Sbjct: 115 GTSGSPIVDKNGDVIGL 131
>d1z8ma1 d.298.1.2 (A:1-88) Hypothetical protein HP0894
{Helicobacter pylori [TaxId: 210]}
Length = 88
Score = 25.1 bits (55), Expect = 6.0
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 14/71 (19%)
Query: 257 IDYAIEFLTNYKRKDKDRTITHKKYIGITMLTLNEKLIEQLR-----------RDRHIPY 305
++ F ++ + + I L E L Q + R+ HI
Sbjct: 4 LNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECHIKP 63
Query: 306 DLTHGVLIWRV 316
D+ +L++ V
Sbjct: 64 DV---LLVYLV 71
>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum)
[TaxId: 5507]}
Length = 224
Score = 25.8 bits (55), Expect = 7.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 225 FGNSGGPLVNLDGEVIGINS 244
G+SGGP+V+ +IG S
Sbjct: 177 QGDSGGPIVDSSNTLIGAVS 196
>d1n7va_ b.126.1.1 (A:) Adsorption protein p2 {Bacteriophage prd1
[TaxId: 10658]}
Length = 555
Score = 25.8 bits (56), Expect = 9.7
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 66 PSLRSQFNFVADVLENVEKSVVNIELVIPYYRQTMSNGSGFIATDDGLIITNAHVVSGKP 125
P LR N+ AD + V+++ V I Y T+S+ + DG + SG
Sbjct: 321 PPLRITNNYFAD--DEVKENTVTIG----NYTTTLSSAYYAVYKTDGYGGATCFIASGGA 374
Query: 126 GAQIIVTLPDGS 137
G +V L D S
Sbjct: 375 GISALVQLQDNS 386
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.401
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,391,746
Number of extensions: 66393
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 39
Length of query: 375
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,213,086
Effective search space: 349368768
Effective search space used: 349368768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)