BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1807
(618 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q7Z|A Chain A, Solution Structure Of The 30 Scr Domains Of Human Complement
Receptor 1
Length = 1931
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 134/305 (43%), Gaps = 24/305 (7%)
Query: 219 NCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQ 274
+CG P N +T+ GST++Y+C EG L+GS + TC W AP C+
Sbjct: 1415 SCGPPPEPFNGMVHINTDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICE 1474
Query: 275 YVDCGKLEHIEHGTVTLETTRTTH-GAVAIYACH------ENYTLIGETRRVCGDG---- 323
+ C I +G + H G V Y CH + + L+GE C
Sbjct: 1475 IISCEPPPTISNGDFYSNNRTSFHNGTVVTYQCHTGPDGEQLFELVGERSIYCTSKDDQV 1534
Query: 324 GKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRTGS---VATYSCEPGFILFGSNELKCGL 380
G W+ P+C+ P++ I R S + + C+PGF++ GS+ ++C
Sbjct: 1535 GVWSSPPPRCISTNKCTAPEVENAIRVPGNRSFFSLTEIIRFRCQPGFVMVGSHTVQCQT 1594
Query: 381 GGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQV 439
G W K P C V C P I +G ++L + + G Y+C+ Y L A
Sbjct: 1595 NGRWGPKLPHCSRV-CQPPPEILHGEHTLSHQDNFSPGQEVFYSCEPSYDLRGAASLH-- 1651
Query: 440 CMRDGKWSGDTPSCELITCPE--PEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLK 497
C G WS + P C + +C + ++P G ++ +L + + + F C+ G L G+++
Sbjct: 1652 CTPQGDWSPEAPRCTVKSCDDFLGQLPHGRVLLPLNLQLGAKVSFVCDEGFRLKGRSASH 1711
Query: 498 CTRQG 502
C G
Sbjct: 1712 CVLAG 1716
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 144/346 (41%), Gaps = 34/346 (9%)
Query: 206 LDYLHW-----ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRT 260
LD L W +C+ +C +P +N + ++GS I+Y+C G+ L+G ++
Sbjct: 946 LDNLVWSSPKDVCKRK--SCKTPPDPVNGMVHVITDIQVGSRINYSCTTGHRLIGHSSAE 1003
Query: 261 C----KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTTH-GAVAIYACH------EN 309
C W+ P CQ + CG I +G H G+V Y C+ +
Sbjct: 1004 CILSGNTAHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKV 1063
Query: 310 YTLIGETRRVCGDG----GKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRTGS---VATY 362
+ L+GE C G W+G PQC+ PP + GI+ + R S V +
Sbjct: 1064 FELVGEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEF 1123
Query: 363 SCEPGFILFGSNELKCGLGGDWSGKAPTCKYVDCGSPANIDNG-HYSLLNGTTTHGSVAE 421
C+PGF++ G +KC W + P+C V C P I +G H + G
Sbjct: 1124 RCQPGFVMKGPRRVKCQALNKWEPELPSCSRV-CQPPPEILHGEHTPSHQDNFSPGQEVF 1182
Query: 422 YTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPE--PEVPKGGYVVGYDLNVHST 479
Y+C+ Y L A C G WS + P C + +C + ++P G + +L + +
Sbjct: 1183 YSCEPGYDLRGAASLH--CTPQGDWSPEAPRCAVKSCDDFLGQLPHGRVLFPLNLQLGAK 1240
Query: 480 LEFHCEPGHLLVGQASLKCTRQGD---WDNMSPQFISFYFPPSETI 522
+ F C+ G L G + C G W+N P + P I
Sbjct: 1241 VSFVCDEGFRLKGSSVSHCVLVGMRSLWNNSVPVCEHIFCPNPPAI 1286
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 147/346 (42%), Gaps = 34/346 (9%)
Query: 206 LDYLHW-----ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRT 260
LD L W +C+ +C +P +N + ++GS I+Y+C G+ L+G ++
Sbjct: 496 LDNLVWSSPKDVCKRK--SCKTPPDPVNGMVHVITDIQVGSRINYSCTTGHRLIGHSSAE 553
Query: 261 C----KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTTH-GAVAIYACHEN------ 309
C W+ P CQ + CG I +G H G+V Y C+
Sbjct: 554 CILSGNAAHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNPGSGGRKV 613
Query: 310 YTLIGETRRVCGDG----GKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRTGS---VATY 362
+ L+GE C G W+G PQC+ PP + GI+ + R S V +
Sbjct: 614 FELVGEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEF 673
Query: 363 SCEPGFILFGSNELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAE 421
C+PGF++ G +KC W + P+C V C P ++ + + + + G
Sbjct: 674 RCQPGFVMKGPRRVKCQALNKWEPELPSCSRV-CQPPPDVLHAERTQRDKDNFSPGQEVF 732
Query: 422 YTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPE--PEVPKGGYVVGYDLNVHST 479
Y+C+ Y L A R C G WS P+CE+ +C + ++ G + +L + +
Sbjct: 733 YSCEPGYDLRGAASMR--CTPQGDWSPAAPTCEVKSCDDFMGQLLNGRVLFPVNLQLGAK 790
Query: 480 LEFHCEPGHLLVGQASLKCTRQGD---WDNMSPQFISFYFPPSETI 522
++F C+ G L G ++ C G W++ P + P I
Sbjct: 791 VDFVCDEGFQLKGSSASYCVLAGMESLWNSSVPVCEQIFCPSPPVI 836
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 137/328 (41%), Gaps = 27/328 (8%)
Query: 219 NCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQ 274
+C +P +N + GS I Y+C +G L+GS++ TC W P C
Sbjct: 62 SCRNPPDPVNGMVHVIKGIQFGSQIKYSCTKGYRLIGSSSATCIISGDTVIWDNETPICD 121
Query: 275 YVDCGKLEHIEHGTVTLETTRTTH-GAVAIYACHEN------YTLIGETRRVCGDG---- 323
+ CG I +G H G+V Y C+ + L+GE C
Sbjct: 122 RIPCGLPPTITNGDFISTNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSIYCTSNDDQV 181
Query: 324 GKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRTGS---VATYSCEPGFILFGSNELKCGL 380
G W+G PQC+ PP + GI+ + R S V + C+PGF++ G +KC
Sbjct: 182 GIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQA 241
Query: 381 GGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQV 439
W + P+C V C P ++ + + + + G Y+C+ Y L A R
Sbjct: 242 LNKWEPELPSCSRV-CQPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLRGAASMR-- 298
Query: 440 CMRDGKWSGDTPSCELITCPE--PEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLK 497
C G WS P+CE+ +C + ++ G + +L + + ++F C+ G L G ++
Sbjct: 299 CTPQGDWSPAAPTCEVKSCDDFMGQLLNGRVLFPVNLQLGAKVDFVCDEGFQLKGSSASY 358
Query: 498 CTRQGD---WDNMSPQFISFYFPPSETI 522
C G W++ P + P I
Sbjct: 359 CVLAGMESLWNSSVPVCEQIFCPSPPVI 386
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 141/343 (41%), Gaps = 51/343 (14%)
Query: 210 HW-----ICQHNPANCGSPDRHLNTTFVGT--VNTKLGSTISYACPEGN------MLVGS 256
HW ICQ P CG P N F+ T N GS ++Y C G+ LVG
Sbjct: 562 HWSTKPPICQRIP--CGLPPTIANGDFISTNRENFHYGSVVTYRCNPGSGGRKVFELVGE 619
Query: 257 ATRTC-----KEGFWTGVAPTCQYVDCGKLEHIEHGT-VTLETTRTTHGAVAIYACHENY 310
+ C + G W+G AP C + ++E+G V+ + + V + C +
Sbjct: 620 PSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGF 679
Query: 311 TLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR---RTGSVATYSCEPG 367
+ G R C KW P C C PP + T + G YSCEPG
Sbjct: 680 VMKGPRRVKCQALNKWEPELPSCS-RVCQPPPDVLHAERTQRDKDNFSPGQEVFYSCEPG 738
Query: 368 FILFGSNELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTH------GSVAE 421
+ L G+ ++C GDWS APTC+ C D+ LLNG G+ +
Sbjct: 739 YDLRGAASMRCTPQGDWSPAAPTCEVKSC------DDFMGQLLNGRVLFPVNLQLGAKVD 792
Query: 422 YTCDDDYWLEAGAMRRQVCM-RDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVH--- 477
+ CD+ + L+ + V + W+ P CE I CP P V G G L V
Sbjct: 793 FVCDEGFQLKGSSASYCVLAGMESLWNSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFPFG 852
Query: 478 STLEFHCEP------GHLLVGQASLKCTR----QGDWDNMSPQ 510
+ + C+P L+G+++++CT G W + +P+
Sbjct: 853 KAVNYTCDPHPDRGTSFDLIGESTIRCTSDPQGNGVWSSPAPR 895
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 138/347 (39%), Gaps = 40/347 (11%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKL--GSTISYAC---PEGNM---LVGSATRTCKE 263
+C+H C +P LN GT + + G ISY C P+ M L+G +T C
Sbjct: 1274 VCEH--IFCPNPPAILNGRHTGTPSGDIPYGKEISYTCDPHPDRGMTFNLIGESTIRCTS 1331
Query: 264 -----GFWTGVAPTCQY-VDCGKLEHIEH-----GTVTLETTRTTHGAVAIYACHENYTL 312
G W+ AP C+ V G + E T+ + G Y C Y
Sbjct: 1332 DPHGNGVWSSPAPRCELSVRAGHCKTPEQFPFASPTIPINDFEFPVGTSLNYECRPGY-- 1389
Query: 313 IGETRRV-CGDGGKWNGTEPQCLFDWCAEPPQISGGIV-TTSGRRTGSVATYSCEPGFIL 370
G+ + C + W+ E C C PP+ G+V + + GS YSC GF L
Sbjct: 1390 FGKMFSISCLENLVWSSVEDNCRRKSCGPPPEPFNGMVHINTDTQFGSTVNYSCNEGFRL 1449
Query: 371 FGSNELKCGLGGD---WSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTH-GSVAEYTC-- 424
GS C + G+ W KAP C+ + C P I NG + N T+ H G+V Y C
Sbjct: 1450 IGSPSTTCLVSGNNVTWDKKAPICEIISCEPPPTISNGDFYSNNRTSFHNGTVVTYQCHT 1509
Query: 425 --DDDYWLEAGAMRRQVCMRD----GKWSGDTPSC-ELITCPEPEVPKGGYVVGYD--LN 475
D + E R C G WS P C C PEV V G +
Sbjct: 1510 GPDGEQLFELVGERSIYCTSKDDQVGVWSSPPPRCISTNKCTAPEVENAIRVPGNRSFFS 1569
Query: 476 VHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQFISFYFPPSETI 522
+ + F C+PG ++VG +++C G W P PP E +
Sbjct: 1570 LTEIIRFRCQPGFVMVGSHTVQCQTNGRWGPKLPHCSRVCQPPPEIL 1616
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 125/293 (42%), Gaps = 27/293 (9%)
Query: 239 LGSTISYACPEGNMLVGSATRTCK-EGFWTGVAPTCQYVDCGKLEHIEHGTVTL-ETTRT 296
L I + C G ++VGS T C+ G W P C V C I HG TL
Sbjct: 1570 LTEIIRFRCQPGFVMVGSHTVQCQTNGRWGPKLPHCSRV-CQPPPEILHGEHTLSHQDNF 1628
Query: 297 THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLF----DWCAEPPQISGGIVTTS 352
+ G Y+C +Y L G C G W+ P+C D+ + P G ++
Sbjct: 1629 SPGQEVFYSCEPSYDLRGAASLHCTPQGDWSPEAPRCTVKSCDDFLGQLPH--GRVLLPL 1686
Query: 353 GRRTGSVATYSCEPGFILFGSNELKCGLGGD---WSGKAPTCKYVDCGSPANIDNG-HYS 408
+ G+ ++ C+ GF L G + C L G W+ P C+ + C +P I NG H
Sbjct: 1687 NLQLGAKVSFVCDEGFRLKGRSASHCVLAGMKALWNSSVPVCEQIFCPNPPAILNGRHTG 1746
Query: 409 LLNGTTTHGSVAEYTCD--DDYWLEAGAMRRQV--CMRD----GKWSGDTPSCEL---IT 457
G +G Y CD D + + C D G WS P CEL
Sbjct: 1747 TPFGDIPYGKEISYACDTHPDRGMTFNLIGESSIRCTSDPQGNGVWSSPAPRCELSVPAA 1806
Query: 458 CPEPEVPKGGYVVGYDLNVH---STLEFHCEPGHLLVGQASLKCTRQGDWDNM 507
CP P + G+ +G ++++ T+ + C+PG+LLVG+ + CT QG W +
Sbjct: 1807 CPHPPKIQNGHYIGGHVSLYLPGMTISYICDPGYLLVGKGFIFCTDQGIWSQL 1859
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 138/336 (41%), Gaps = 46/336 (13%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGT--VNTKLGSTISYACPEGN------MLVGSATRTC-- 261
IC P CG P N F+ T N GS ++Y C G+ LVG + C
Sbjct: 119 ICDRIP--CGLPPTITNGDFISTNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSIYCTS 176
Query: 262 ---KEGFWTGVAPTCQYVDCGKLEHIEHGT-VTLETTRTTHGAVAIYACHENYTLIGETR 317
+ G W+G AP C + ++E+G V+ + + V + C + + G R
Sbjct: 177 NDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRR 236
Query: 318 RVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR---RTGSVATYSCEPGFILFGSN 374
C KW P C C PP + T + G YSCEPG+ L G+
Sbjct: 237 VKCQALNKWEPELPSCS-RVCQPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLRGAA 295
Query: 375 ELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTH------GSVAEYTCDDDY 428
++C GDWS APTC+ C D+ LLNG G+ ++ CD+ +
Sbjct: 296 SMRCTPQGDWSPAAPTCEVKSC------DDFMGQLLNGRVLFPVNLQLGAKVDFVCDEGF 349
Query: 429 WLEAGAMRRQVCM-RDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVH---STLEFHC 484
L+ + V + W+ P CE I CP P V G G L V + + C
Sbjct: 350 QLKGSSASYCVLAGMESLWNSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFPFGKAVNYTC 409
Query: 485 EP------GHLLVGQASLKCTR----QGDWDNMSPQ 510
+P L+G+++++CT G W + +P+
Sbjct: 410 DPHPDRGTSFDLIGESTIRCTSDPQGNGVWSSPAPR 445
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 137/338 (40%), Gaps = 41/338 (12%)
Query: 210 HW-----ICQHNPANCGSPDRHLNTTFVGT--VNTKLGSTISYACPEGNM------LVGS 256
HW ICQ P CG P N F+ T N GS ++Y C G+ LVG
Sbjct: 1012 HWSTKPPICQRIP--CGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGE 1069
Query: 257 ATRTC-----KEGFWTGVAPTCQYVDCGKLEHIEHGT-VTLETTRTTHGAVAIYACHENY 310
+ C + G W+G AP C + ++E+G V+ + + V + C +
Sbjct: 1070 PSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGF 1129
Query: 311 TLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR---RTGSVATYSCEPG 367
+ G R C KW P C C PP+I G T S + G YSCEPG
Sbjct: 1130 VMKGPRRVKCQALNKWEPELPSCS-RVCQPPPEILHGEHTPSHQDNFSPGQEVFYSCEPG 1188
Query: 368 FILFGSNELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDD 427
+ L G+ L C GDWS +AP C C L G+ + CD+
Sbjct: 1189 YDLRGAASLHCTPQGDWSPEAPRCAVKSCDDFLGQLPHGRVLFPLNLQLGAKVSFVCDEG 1248
Query: 428 YWLEAGAMRRQVC--MRDGKWSGDTPSCELITCPEPEVPKGGYVVGY---DLNVHSTLEF 482
+ L+ ++ V MR W+ P CE I CP P G G D+ + +
Sbjct: 1249 FRLKGSSVSHCVLVGMRS-LWNNSVPVCEHIFCPNPPAILNGRHTGTPSGDIPYGKEISY 1307
Query: 483 HCEPG------HLLVGQASLKCTR----QGDWDNMSPQ 510
C+P L+G+++++CT G W + +P+
Sbjct: 1308 TCDPHPDRGMTFNLIGESTIRCTSDPHGNGVWSSPAPR 1345
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 125/321 (38%), Gaps = 45/321 (14%)
Query: 239 LGSTISYAC-PEGNM-----LVGSATRTCKE-----GFWTGVAPTCQYV-DCGKLEHIEH 286
G ++Y C P + L+G +T C G W+ AP C + C +H
Sbjct: 851 FGKAVNYTCDPHPDRGTSFDLIGESTIRCTSDPQGNGVWSSPAPRCGILGHCQAPDHFLF 910
Query: 287 GTVTLETTRTTH--GAVAIYACHENYTLIGETRRV-CGDGGKWNGTEPQCLFDWCAEPPQ 343
+ +T + G Y C Y G + C D W+ + C C PP
Sbjct: 911 AKLKTQTNASDFPIGTSLKYECRPEY--YGRPFSITCLDNLVWSSPKDVCKRKSCKTPPD 968
Query: 344 ISGGIV-TTSGRRTGSVATYSCEPGFILFGSNELKCGLGGD---WSGKAPTCKYVDCGSP 399
G+V + + GS YSC G L G + +C L G+ WS K P C+ + CG P
Sbjct: 969 PVNGMVHVITDIQVGSRINYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQRIPCGLP 1028
Query: 400 ANIDNGHYSLLNGTTTH-GSVAEYTCDDDYWLEAGAMRRQV----------CMRD----G 444
I NG + N H GSV Y C+ G+ R+V C + G
Sbjct: 1029 PTIANGDFISTNRENFHYGSVVTYRCN------LGSRGRKVFELVGEPSIYCTSNDDQVG 1082
Query: 445 KWSGDTPSCELIT-CPEPEVPKGGYVVGYD--LNVHSTLEFHCEPGHLLVGQASLKCTRQ 501
WSG P C + C P V G V +++ +EF C+PG ++ G +KC
Sbjct: 1083 IWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQAL 1142
Query: 502 GDWDNMSPQFISFYFPPSETI 522
W+ P PP E +
Sbjct: 1143 NKWEPELPSCSRVCQPPPEIL 1163
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 126/323 (39%), Gaps = 45/323 (13%)
Query: 239 LGSTISYAC-PEGNM-----LVGSATRTCKE-----GFWTGVAPTCQYV-DCGKLEHIEH 286
G ++Y C P + L+G +T C G W+ AP C + C +H
Sbjct: 401 FGKAVNYTCDPHPDRGTSFDLIGESTIRCTSDPQGNGVWSSPAPRCGILGHCQAPDHFLF 460
Query: 287 GTVTLETTRTTH--GAVAIYACHENYTLIGETRRV-CGDGGKWNGTEPQCLFDWCAEPPQ 343
+ +T + G Y C Y G + C D W+ + C C PP
Sbjct: 461 AKLKTQTNASDFPIGTSLKYECRPEY--YGRPFSITCLDNLVWSSPKDVCKRKSCKTPPD 518
Query: 344 ISGGIV-TTSGRRTGSVATYSCEPGFILFGSNELKCGLGGD---WSGKAPTCKYVDCGSP 399
G+V + + GS YSC G L G + +C L G+ WS K P C+ + CG P
Sbjct: 519 PVNGMVHVITDIQVGSRINYSCTTGHRLIGHSSAECILSGNAAHWSTKPPICQRIPCGLP 578
Query: 400 ANIDNGHYSLLNGTTTH-GSVAEYTCDDDYWLEAGAMRRQV----------CMRD----G 444
I NG + N H GSV Y C+ G+ R+V C + G
Sbjct: 579 PTIANGDFISTNRENFHYGSVVTYRCN------PGSGGRKVFELVGEPSIYCTSNDDQVG 632
Query: 445 KWSGDTPSCELIT-CPEPEVPKGGYVVGYD--LNVHSTLEFHCEPGHLLVGQASLKCTRQ 501
WSG P C + C P V G V +++ +EF C+PG ++ G +KC
Sbjct: 633 IWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQAL 692
Query: 502 GDWDNMSPQFISFYFPPSETISA 524
W+ P PP + + A
Sbjct: 693 NKWEPELPSCSRVCQPPPDVLHA 715
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 93/228 (40%), Gaps = 28/228 (12%)
Query: 319 VCGDGGKWNGTEPQCLFDWCAEPPQISGGIV-TTSGRRTGSVATYSCEPGFILFGSNELK 377
+C W G + +C C PP G+V G + GS YSC G+ L GS+
Sbjct: 44 ICLKNSVWTGAKDRCRRKSCRNPPDPVNGMVHVIKGIQFGSQIKYSCTKGYRLIGSSSAT 103
Query: 378 CGLGGD---WSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTH-GSVAEYTCDDDYWLEAG 433
C + GD W + P C + CG P I NG + N H GSV Y C+ G
Sbjct: 104 CIISGDTVIWDNETPICDRIPCGLPPTITNGDFISTNRENFHYGSVVTYRCN------PG 157
Query: 434 AMRRQV----------CMRD----GKWSGDTPSCELIT-CPEPEVPKGGYVVGYD--LNV 476
+ R+V C + G WSG P C + C P V G V ++
Sbjct: 158 SGGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSL 217
Query: 477 HSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQFISFYFPPSETISA 524
+ +EF C+PG ++ G +KC W+ P PP + + A
Sbjct: 218 NEVVEFRCQPGFVMKGPRRVKCQALNKWEPELPSCSRVCQPPPDVLHA 265
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 123/339 (36%), Gaps = 55/339 (16%)
Query: 203 GCKLDYLHWICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC- 261
G KL + +CQ P H T N G + Y+C L G+A+ C
Sbjct: 1599 GPKLPHCSRVCQPPPE-----ILHGEHTLSHQDNFSPGQEVFYSCEPSYDLRGAASLHCT 1653
Query: 262 KEGFWTGVAPTCQYVDCGK-LEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC 320
+G W+ AP C C L + HG V L GA + C E + L G + C
Sbjct: 1654 PQGDWSPEAPRCTVKSCDDFLGQLPHGRVLLPLNLQL-GAKVSFVCDEGFRLKGRSASHC 1712
Query: 321 ---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRTGSV---------ATYSCEPG- 367
G WN + P C +C PP I +GR TG+ +Y+C+
Sbjct: 1713 VLAGMKALWNSSVPVCEQIFCPNPPAI------LNGRHTGTPFGDIPYGKEISYACDTHP 1766
Query: 368 -----FILFGSNELKCGL----GGDWSGKAPTCKY---VDCGSPANIDNGHYSLLNGTTT 415
F L G + ++C G WS AP C+ C P I NGHY + G +
Sbjct: 1767 DRGMTFNLIGESSIRCTSDPQGNGVWSSPAPRCELSVPAACPHPPKIQNGHY--IGGHVS 1824
Query: 416 ---HGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGGYVVGY 472
G Y CD Y L C G WS C+ + C P G +
Sbjct: 1825 LYLPGMTISYICDPGYLLVGKGF--IFCTDQGIWSQLDHYCKEVNCSFPLFMNG---ISK 1879
Query: 473 DLNVHSTLEF------HCEPGHLLVGQASLKCTRQGDWD 505
+L + + CE G+ L G +C WD
Sbjct: 1880 ELEMKKVYHYGDYVTLKCEDGYTLEGSPWSQCQADDRWD 1918
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 93/241 (38%), Gaps = 24/241 (9%)
Query: 235 VNTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYVDCGKLEHIEHGTVT 290
+N +LG+ +S+ C EG L G + C + W P C+ + C I +G T
Sbjct: 1686 LNLQLGAKVSFVCDEGFRLKGRSASHCVLAGMKALWNSSVPVCEQIFCPNPPAILNGRHT 1745
Query: 291 -LETTRTTHGAVAIYACHEN------YTLIGETRRVCGD----GGKWNGTEPQCLFD--- 336
+G YAC + + LIGE+ C G W+ P+C
Sbjct: 1746 GTPFGDIPYGKEISYACDTHPDRGMTFNLIGESSIRCTSDPQGNGVWSSPAPRCELSVPA 1805
Query: 337 WCAEPPQISGGIVT---TSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKY 393
C PP+I G S G +Y C+PG++L G + C G WS CK
Sbjct: 1806 ACPHPPKIQNGHYIGGHVSLYLPGMTISYICDPGYLLVGKGFIFCTDQGIWSQLDHYCKE 1865
Query: 394 VDCGSPANIDNGHYSL-LNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPS 452
V+C P ++ L + +G C+D Y LE + C D +W
Sbjct: 1866 VNCSFPLFMNGISKELEMKKVYHYGDYVTLKCEDGYTLEGSPWSQ--CQADDRWDPPLAK 1923
Query: 453 C 453
C
Sbjct: 1924 C 1924
>pdb|2GSX|A Chain A, Complement Receptor Type 2
Length = 951
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 134/312 (42%), Gaps = 37/312 (11%)
Query: 226 HLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC-KEGFWTGVAPTCQYVDCGKLEHI 284
H + VG++ G +++Y+C G +LVG C G W+ V PTC+ C L
Sbjct: 144 HHTSENVGSIAP--GLSVTYSCESGYLLVGEKIINCLSSGKWSAVPPTCEEARCKSLGRF 201
Query: 285 EHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEP 341
+G V E G A + C E Y L G C G G W P C +C P
Sbjct: 202 PNGKVK-EPPILRVGVTANFFCDEGYRLQGPPSSRCVIAGQGVAWTKM-PVCEEIFCPSP 259
Query: 342 PQISGGIV---TTSGRRTGSVATYSCEP------GFILFGSNELKCGLG----GDWSGKA 388
P I G + + GS+ TY+C+P FIL G + L+C + G WSG A
Sbjct: 260 PPILNGRHIGNSLANVSYGSIVTYTCDPDPEEGVNFILIGESTLRCTVDSQKTGTWSGPA 319
Query: 389 PTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDD------YWLEAGAMRRQVCMR 442
P C+ S + + H +L G G YT +D + ++ C
Sbjct: 320 PRCEL----STSAVQCPHPQILRGRMVSGQKDRYTYNDTVIFACMFGFTLKGSKQIRCNA 375
Query: 443 DGKWSGDTPSCELITCPEPEVPKGG----YVVGYDLNVHSTLEFHCEPGHLLVGQASLKC 498
G W P CE P + G ++V +D +++++ C PG++LVG+ S++C
Sbjct: 376 QGTWEPSAPVCEKECQAPPNILNGQKEDRHMVRFDPG--TSIKYSCNPGYVLVGEESIQC 433
Query: 499 TRQGDWDNMSPQ 510
T +G W PQ
Sbjct: 434 TSEGVWTPPVPQ 445
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 133/323 (41%), Gaps = 34/323 (10%)
Query: 219 NCGSPDRHLNTTF-VGTVNTKLGSTISYACPEGNMLVGSATRTC-----KEGFWTGVAPT 272
+CGSP LN + +G+ I Y+C L+G + C +G W AP
Sbjct: 2 SCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPK 61
Query: 273 CQYVD--CGKLEHIEHGTVTLE-TTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGT 329
C+Y + E I G + +T HG +AC N+++ G C W T
Sbjct: 62 CEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPT 121
Query: 330 E-PQCLFDW---CAEPPQISGGIVTTSGRRTGSVA-----TYSCEPGFILFGSNELKCGL 380
P C+ + C P I G T+ GS+A TYSCE G++L G + C
Sbjct: 122 RLPTCVSVFPLECPALPMIHNGHHTS--ENVGSIAPGLSVTYSCESGYLLVGEKIINCLS 179
Query: 381 GGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVC 440
G WS PTC+ C S NG G A + CD+ Y L+ R V
Sbjct: 180 SGKWSAVPPTCEEARCKSLGRFPNGKVK-EPPILRVGVTANFFCDEGYRLQGPPSSRCVI 238
Query: 441 MRDGKWSGDTPSCELITCPEPEVPKGGYVVGYDL-NVH--STLEFHCEP------GHLLV 491
G P CE I CP P G +G L NV S + + C+P +L+
Sbjct: 239 AGQGVAWTKMPVCEEIFCPSPPPILNGRHIGNSLANVSYGSIVTYTCDPDPEEGVNFILI 298
Query: 492 GQASLKCT----RQGDWDNMSPQ 510
G+++L+CT + G W +P+
Sbjct: 299 GESTLRCTVDSQKTGTWSGPAPR 321
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 130/325 (40%), Gaps = 44/325 (13%)
Query: 220 CGSPDRHLNTTFVGT--VNTKLGSTISYAC---PEGN---MLVGSATRTC-----KEGFW 266
C SP LN +G N GS ++Y C PE +L+G +T C K G W
Sbjct: 256 CPSPPPILNGRHIGNSLANVSYGSIVTYTCDPDPEEGVNFILIGESTLRCTVDSQKTGTW 315
Query: 267 TGVAPTCQY----VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGD 322
+G AP C+ V C + + V+ + R T+ I+AC +TL G + C
Sbjct: 316 SGPAPRCELSTSAVQCPHPQILRGRMVSGQKDRYTYNDTVIFACMFGFTLKGSKQIRCNA 375
Query: 323 GGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR---RTGSVATYSCEPGFILFGSNELKCG 379
G W + P C + C PP I G G+ YSC PG++L G ++C
Sbjct: 376 QGTWEPSAPVCEKE-CQAPPNILNGQKEDRHMVRFDPGTSIKYSCNPGYVLVGEESIQCT 434
Query: 380 LGGDWSGKAPTCKYVDCGSPAN--IDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRR 437
G W+ P CK C + + + + +C + Y L
Sbjct: 435 SEGVWTPPVPQCKVAACEATGRQLLTKPQHQFVRPDVNS------SCGEGYKLSGSVY-- 486
Query: 438 QVCMRDGKWSGDTPSCELITCPEPEVPKGGYVVGY---DLNVHSTLEFHCEPG------H 488
Q C W + C+ ITCP P V G G D +T+ + C PG
Sbjct: 487 QECQGTIPWFMEIRLCKEITCPPPPVIYNGAHTGSSLEDFPYGTTVTYTCNPGPERGVEF 546
Query: 489 LLVGQASLKCT----RQGDWDNMSP 509
L+G+++++CT +G W +P
Sbjct: 547 SLIGESTIRCTSNDQERGTWSGPAP 571
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 116/290 (40%), Gaps = 35/290 (12%)
Query: 243 ISYACPEGNMLVGSATRTCKE---GFWTGVAPTCQYVDCGKLEHIEHGTVT-LETTRTTH 298
++ +C +G L G A + C++ G W P C+ + C I +G T + +
Sbjct: 661 VNTSCQDGYQLTGHAYQMCQDAENGIWFKKIPLCKVIHCHPPPVIVNGKHTGMMAENFLY 720
Query: 299 GAVAIYACHENYTLIGETRRVCGDG----GKWNGTEPQCL----FDWCAEPPQISGGIV- 349
G Y C + + L+GE + C G W+G PQCL C P G +
Sbjct: 721 GNEVSYECDQGFYLLGEKKLQCRSDSKGHGSWSGPSPQCLRSPPVTRCPNPEVKHGYKLN 780
Query: 350 -TTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTC---KYVDCGSPANIDNG 405
T S + C PGFI+ GS ++C W PTC ++ C P NG
Sbjct: 781 KTHSAYSHNDIVYVDCNPGFIMNGSRVIRCHTDNTWVPGVPTCIKKAFIGCPPPPKTPNG 840
Query: 406 HYSLLN-GTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPE-- 462
+++ N + G Y+CD Y L A+ +C +G WS P C+ + C P
Sbjct: 841 NHTGGNIARFSPGMSILYSCDQGYLLVGEALL--LCTHEGTWSQPAPHCKEVNCSSPADM 898
Query: 463 -------VPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWD 505
P+ Y G + + CE G++L G +C W+
Sbjct: 899 DGIQKGLEPRKMYQYG------AVVTLECEDGYMLEGSPQSQCQSDHQWN 942
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 117/295 (39%), Gaps = 39/295 (13%)
Query: 242 TISYACPEGNMLVGSATRTCK-EGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTTHGA 300
T+++ C G L GS+ CK + W P C+ C +H+ L
Sbjct: 605 TVTFKCYSGFTLKGSSQIRCKADNTWDPEIPVCEKETC---QHVRQSLQELPAGSRVE-- 659
Query: 301 VAIYACHENYTLIGETRRVCGDG--GKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRTGS 358
+ +C + Y L G ++C D G W P C C PP V +G+ TG
Sbjct: 660 LVNTSCQDGYQLTGHAYQMCQDAENGIWFKKIPLCKVIHCHPPP------VIVNGKHTGM 713
Query: 359 VA---------TYSCEPGFILFGSNELKCGLG----GDWSGKAPTC----KYVDCGSPAN 401
+A +Y C+ GF L G +L+C G WSG +P C C +P
Sbjct: 714 MAENFLYGNEVSYECDQGFYLLGEKKLQCRSDSKGHGSWSGPSPQCLRSPPVTRCPNPEV 773
Query: 402 IDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSC---ELITC 458
+ + +H + C+ + + + R C D W P+C I C
Sbjct: 774 KHGYKLNKTHSAYSHNDIVYVDCNPGFIMNGSRVIR--CHTDNTWVPGVPTCIKKAFIGC 831
Query: 459 PEPEVPKGGYVVGYDLNVHS---TLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQ 510
P P G G ++ S ++ + C+ G+LLVG+A L CT +G W +P
Sbjct: 832 PPPPKTPNGNHTGGNIARFSPGMSILYSCDQGYLLVGEALLLCTHEGTWSQPAPH 886
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 104/255 (40%), Gaps = 22/255 (8%)
Query: 219 NCGSPDRHLNTTFVGTV--NTKLGSTISYACPEGNMLVGSATRTCK-----EGFWTGVAP 271
+C P +N G + N G+ +SY C +G L+G C+ G W+G +P
Sbjct: 698 HCHPPPVIVNGKHTGMMAENFLYGNEVSYECDQGFYLLGEKKLQCRSDSKGHGSWSGPSP 757
Query: 272 TC----QYVDCGKLEHIEHGTVTLET-TRTTHGAVAIYACHENYTLIGETRRVCGDGGKW 326
C C E ++HG +T + +H + C+ + + G C W
Sbjct: 758 QCLRSPPVTRCPNPE-VKHGYKLNKTHSAYSHNDIVYVDCNPGFIMNGSRVIRCHTDNTW 816
Query: 327 NGTEPQCL---FDWCAEPPQISGGIVT---TSGRRTGSVATYSCEPGFILFGSNELKCGL 380
P C+ F C PP+ G T + G YSC+ G++L G L C
Sbjct: 817 VPGVPTCIKKAFIGCPPPPKTPNGNHTGGNIARFSPGMSILYSCDQGYLLVGEALLLCTH 876
Query: 381 GGDWSGKAPTCKYVDCGSPANIDNGHYSL-LNGTTTHGSVAEYTCDDDYWLEAGAMRRQV 439
G WS AP CK V+C SPA++D L +G+V C+D Y LE +
Sbjct: 877 EGTWSQPAPHCKEVNCSSPADMDGIQKGLEPRKMYQYGAVVTLECEDGYMLEGSPQSQ-- 934
Query: 440 CMRDGKWSGDTPSCE 454
C D +W+ C
Sbjct: 935 CQSDHQWNPPLAVCR 949
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 106/251 (42%), Gaps = 22/251 (8%)
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC----GDGGKWNGTEP 331
+ CG I +G ++ +T G V Y+C + LIGE +C G W+ P
Sbjct: 1 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 60
Query: 332 QC----LFDWCAEPPQISGG--IVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDW- 384
+C + C E P + GG I ++ R G T++C+ F + G+ + C W
Sbjct: 61 KCEYFNKYSSCPE-PIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWG 119
Query: 385 SGKAPTCKYV---DCGSPANIDNGHYSLLN-GTTTHGSVAEYTCDDDYWLEAGAMRRQVC 440
+ PTC V +C + I NGH++ N G+ G Y+C+ Y L + C
Sbjct: 120 PTRLPTCVSVFPLECPALPMIHNGHHTSENVGSIAPGLSVTYSCESGYLLVGEKIIN--C 177
Query: 441 MRDGKWSGDTPSCELITCPEP-EVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCT 499
+ GKWS P+CE C P G L V T F C+ G+ L G S +C
Sbjct: 178 LSSGKWSAVPPTCEEARCKSLGRFPNGKVKEPPILRVGVTANFFCDEGYRLQGPPSSRCV 237
Query: 500 RQGD---WDNM 507
G W M
Sbjct: 238 IAGQGVAWTKM 248
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 109/263 (41%), Gaps = 26/263 (9%)
Query: 218 ANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTC 273
A C S R N ++G T ++ C EG L G + C + WT + P C
Sbjct: 193 ARCKSLGRFPNGKVKEPPILRVGVTANFFCDEGYRLQGPPSSRCVIAGQGVAWTKM-PVC 251
Query: 274 QYVDCGKLEHIEHGT-VTLETTRTTHGAVAIYACHE------NYTLIGETRRVC----GD 322
+ + C I +G + ++G++ Y C N+ LIGE+ C
Sbjct: 252 EEIFCPSPPPILNGRHIGNSLANVSYGSIVTYTCDPDPEEGVNFILIGESTLRCTVDSQK 311
Query: 323 GGKWNGTEPQCLFD----WCAEPPQISGGIVTTSGRR--TGSVATYSCEPGFILFGSNEL 376
G W+G P+C C P + G +V+ R ++C GF L GS ++
Sbjct: 312 TGTWSGPAPRCELSTSAVQCPHPQILRGRMVSGQKDRYTYNDTVIFACMFGFTLKGSKQI 371
Query: 377 KCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAM 435
+C G W AP C+ +C +P NI NG + G+ +Y+C+ Y L G
Sbjct: 372 RCNAQGTWEPSAPVCEK-ECQAPPNILNGQKEDRHMVRFDPGTSIKYSCNPGYVL-VGEE 429
Query: 436 RRQVCMRDGKWSGDTPSCELITC 458
Q C +G W+ P C++ C
Sbjct: 430 SIQ-CTSEGVWTPPVPQCKVAAC 451
>pdb|1NTL|A Chain A, Model Of Mouse Crry-Ig Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|1NTL|B Chain B, Model Of Mouse Crry-Ig Determined By Solution Scattering,
Curve Fitting And Homology Modelling
Length = 551
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 114/268 (42%), Gaps = 24/268 (8%)
Query: 219 NCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQ 274
C +P N + GS I+Y C +G L+GS++ C + W AP C+
Sbjct: 63 QCKTPSDPENGLVHVHTGIEFGSRINYTCNQGYRLIGSSSAVCVITDQSVDWDTEAPICE 122
Query: 275 YVDCGKLEHIEHGTVTLETTRTTH-GAVAIYACHEN------YTLIGETRRVC----GDG 323
++ C I +G T H G V Y C+ + + L+GE C G+
Sbjct: 123 WIPCEIPPGIPNGDFFSSTREDFHYGMVVTYRCNTDARGKALFNLVGEPSLYCTSNDGEI 182
Query: 324 GKWNGTEPQCL-FDWCAEPPQISGGIVTTSGRRTGS---VATYSCEPGFILFGSNELKCG 379
G W+G PQC+ + C PP + ++ + R S + + C PGFI+ G++ + C
Sbjct: 183 GVWSGPPPQCIELNKCTPPPYVENAVMLSENRSLFSLRDIVEFRCHPGFIMKGASSVHCQ 242
Query: 380 LGGDWSGKAPTC-KYVDCGSPANIDNGHYSL-LNGTTTHGSVAEYTCDDDYWLEAGAMRR 437
W + P+C K V C P + L + +G C+D Y LE + +
Sbjct: 243 SLNKWEPELPSCFKGVICRLPQEMSGFQKGLGMKKEYYYGENVTLECEDGYTLEGSSQSQ 302
Query: 438 QVCMRDGKWSGDTPSCELITCPEPEVPK 465
C DG W+ C + +PEVP+
Sbjct: 303 --CQSDGSWNPLLAKC-VSRLADPEVPR 327
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 94/228 (41%), Gaps = 18/228 (7%)
Query: 299 GAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTT-SGRRTG 357
G +Y C Y + + C W E +C+ C P G+V +G G
Sbjct: 26 GTYLLYECLPGY-IKRQFSITCKQDSTWTSAEDKCIRKQCKTPSDPENGLVHVHTGIEFG 84
Query: 358 SVATYSCEPGFILFGSNELKCGLGG---DWSGKAPTCKYVDCGSPANIDNG-HYSLLNGT 413
S Y+C G+ L GS+ C + DW +AP C+++ C P I NG +S
Sbjct: 85 SRINYTCNQGYRLIGSSSAVCVITDQSVDWDTEAPICEWIPCEIPPGIPNGDFFSSTRED 144
Query: 414 TTHGSVAEYTCDDDYWLEA-----GAMRRQVCMRDGK---WSGDTPSC-ELITCPEPEVP 464
+G V Y C+ D +A G DG+ WSG P C EL C P
Sbjct: 145 FHYGMVVTYRCNTDARGKALFNLVGEPSLYCTSNDGEIGVWSGPPPQCIELNKCTPPPYV 204
Query: 465 KGGYVVGYDLNVHS---TLEFHCEPGHLLVGQASLKCTRQGDWDNMSP 509
+ ++ + ++ S +EF C PG ++ G +S+ C W+ P
Sbjct: 205 ENAVMLSENRSLFSLRDIVEFRCHPGFIMKGASSVHCQSLNKWEPELP 252
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 120/300 (40%), Gaps = 31/300 (10%)
Query: 239 LGSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTT 297
+G+ + Y C G + + TCK+ WT C C E+G V + T
Sbjct: 25 IGTYLLYECLPG-YIKRQFSITCKQDSTWTSAEDKCIRKQCKTPSDPENGLVHVHTG-IE 82
Query: 298 HGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR 354
G+ Y C++ Y LIG + VC W+ P C + C PP I G +S R
Sbjct: 83 FGSRINYTCNQGYRLIGSSSAVCVITDQSVDWDTEAPICEWIPCEIPPGIPNGDFFSSTR 142
Query: 355 RT---GSVATYSC------EPGFILFGSNELKC----GLGGDWSGKAPTCKYVD-CGSPA 400
G V TY C + F L G L C G G WSG P C ++ C P
Sbjct: 143 EDFHYGMVVTYRCNTDARGKALFNLVGEPSLYCTSNDGEIGVWSGPPPQCIELNKCTPPP 202
Query: 401 NIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSC-ELITC 458
++N N + + + E+ C + ++ + C KW + PSC + + C
Sbjct: 203 YVENAVMLSENRSLFSLRDIVEFRCHPGFIMKGASSVH--CQSLNKWEPELPSCFKGVIC 260
Query: 459 PEPEVPKG-----GYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQFIS 513
P+ G G Y + TLE CE G+ L G + +C G W+ + + +S
Sbjct: 261 RLPQEMSGFQKGLGMKKEYYYGENVTLE--CEDGYTLEGSSQSQCQSDGSWNPLLAKCVS 318
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 137/330 (41%), Gaps = 34/330 (10%)
Query: 193 GGRGWL--------WN-DVGCKLDYLHWICQHNPANCGSPDRHLNTTFVGTVNTKLGSTI 243
G GW+ W+ +V C + + +C P P+ H TT T+N + G +
Sbjct: 765 GKEGWIHTVCINGRWDPEVNCSMAQIQ-LCPPPPQ---IPNSHNMTT---TLNYRDGEKV 817
Query: 244 SYACPEGNMLVGSATRTCKEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRT---THGA 300
S C E ++ TCK+G W + + + C + IEHGT+ + HG
Sbjct: 818 SVLCQENYLIQEGEEITCKDGRWQSIPLCVEKIPCSQPPQIEHGTINSSRSSQESYAHGT 877
Query: 301 VAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVT--TSGRRTGS 358
Y C + + E C GKW+ + PQC C PP+IS G+V + + G
Sbjct: 878 KLSYTCEGGFRISEENETTCY-MGKWS-SPPQCEGLPCKSPPEISHGVVAHMSDSYQYGE 935
Query: 359 VATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVDCGSPANIDNG-HYSLLNGTTTHG 417
TY C GF + G KC LG WS P+C DC S + +N G
Sbjct: 936 EVTYKCFEGFGIDGPAIAKC-LGEKWS-HPPSCIKTDCLSLPSFENAIPMGEKKDVYKAG 993
Query: 418 SVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVH 477
YTC Y ++ + V + +W+G P+C +C P + Y+V ++ +
Sbjct: 994 EQVTYTCATYYKMDGAS---NVTCINSRWTG-RPTCRDTSCVNPPTVQNAYIVSRQMSKY 1049
Query: 478 ST---LEFHCEPGHLLVGQASLKCTRQGDW 504
+ + + C + + G + C G+W
Sbjct: 1050 PSGERVRYQCRSPYEMFGDEEVMCL-NGNW 1078
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 90/238 (37%), Gaps = 14/238 (5%)
Query: 240 GSTISYACPEGNMLVGSATRTCKEGFWTGVAP--TCQYVDCGKLEHIEHGTVTLETTRT- 296
G+ Y C G +G+ C++G W + P CQ CG GT TL
Sbjct: 27 GTQAIYKCRPGYRSLGNVIMVCRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVF 86
Query: 297 THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT 356
+G A+Y C+E Y L+GE D W P C C G + +S
Sbjct: 87 EYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEP 146
Query: 357 ------GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLL 410
G + C G+ + G E+ C G WS + P C + C SP ++ NG
Sbjct: 147 DREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSP-DVINGSPISQ 205
Query: 411 NGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGGY 468
+Y C+ Y E VC G W PSCE +C P +P G Y
Sbjct: 206 KIIYKENERFQYKCNMGY--EYSERGDAVCTESG-WR-PLPSCEEKSCDNPYIPNGDY 259
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 16/206 (7%)
Query: 341 PPQISGGIVTTS----GRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAP--TCKYV 394
PP+ + I+T S G+ A Y C PG+ G+ + C G+W P C+
Sbjct: 7 PPRRNTEILTGSWSDQTYPEGTQAIYKCRPGYRSLGNVIMVC-RKGEWVALNPLRKCQKR 65
Query: 395 DCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSC 453
CG P + G ++L G +G A YTC++ Y L G + + C DG W+ D P C
Sbjct: 66 PCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQL-LGEINYRECDTDG-WTNDIPIC 123
Query: 454 ELITCPEPEVPKGGYVVGY----DLNVH--STLEFHCEPGHLLVGQASLKCTRQGDWDNM 507
E++ C P+ G +V D H + F C G+ + G + C+ G W
Sbjct: 124 EVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKE 183
Query: 508 SPQFISFYFPPSETISAVSEAQTLGY 533
P+ + + I+ +Q + Y
Sbjct: 184 KPKCVEISCKSPDVINGSPISQKIIY 209
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 125/364 (34%), Gaps = 82/364 (22%)
Query: 213 CQHNPANCGSP-DRHLNT-TFVGTVNTKLGSTISYACPEGNMLVGSAT-RTCKEGFWTGV 269
CQ P CG P D T T G + G Y C EG L+G R C WT
Sbjct: 62 CQKRP--CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTND 119
Query: 270 APTCQYVDCGKLEHIEHGTVT---LETTRTTH-GAVAIYACHENYTLIGETRRVCGDGGK 325
P C+ V C + E+G + +E R H G + C+ Y + G+ C D G
Sbjct: 120 IPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGF 179
Query: 326 WNGTEPQCLFDWCAEPPQISG------------------------------GIVTTSG-- 353
W+ +P+C+ C P I+G + T SG
Sbjct: 180 WSKEKPKCVEISCKSPDVINGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESGWR 239
Query: 354 --------------------------RRTGSVATYSCEPGFI-LFGSNELKCGLGGDWSG 386
RTG TY C GF N KC G W
Sbjct: 240 PLPSCEEKSCDNPYIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTG-WI- 297
Query: 387 KAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVA-----EYTCDDDYWLEAGAMRRQV-C 440
AP C C P +I +G N + VA Y CD+ + +G+ + C
Sbjct: 298 PAPRCTLKPCDYP-DIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHC 356
Query: 441 MRDGKWSGDTPSCELITCPEPEVPKG-GYVVGYDLNVHSTLEFHCEPGHLLV-GQASLKC 498
+DG WS P L C P + G G +++ C PG+ L Q ++ C
Sbjct: 357 TQDG-WSPAVPC--LRKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTC 413
Query: 499 TRQG 502
G
Sbjct: 414 MENG 417
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 98/224 (43%), Gaps = 23/224 (10%)
Query: 304 YACHENY-TLIGET--RRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR---RTG 357
Y CH+ Y + G T VCG G W+ P C C E P+I +V + + G
Sbjct: 516 YECHDGYESNTGSTTGSIVCGYNG-WSDL-PICYEREC-ELPKIDVHLVPDRKKDQYKVG 572
Query: 358 SVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCK--YVDCGSPANIDNGHYSLLNGTTT 415
V +SC+PGF + G N ++C G S P CK CG P + NG+
Sbjct: 573 EVLKFSCKPGFTIVGPNSVQCYHFG-LSPDLPICKEQVQSCGPPPELLNGNVKEKTKEEY 631
Query: 416 -HGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSC--ELITCPE-PEVPKG-GYVV 470
H V EY C+ + ++ + V DG+W+ P C E TC + PE+ G +
Sbjct: 632 GHSEVVEYYCNPRFLMKGPNKIQCV---DGEWT-TLPVCIVEESTCGDIPELEHGWAQLS 687
Query: 471 GYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQFISF 514
++EF+C ++G S+ C G W + PQ ++
Sbjct: 688 SPPYYYGDSVEFNCSESFTMIGHRSITCI-HGVWTQL-PQCVAI 729
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 113/310 (36%), Gaps = 24/310 (7%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGST--ISYACPEGNMLVGSATRTCKEGFWTGV 269
IC+ +CG P LN + G + + Y C ++ G C +G WT +
Sbjct: 604 ICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVDGEWTTL 663
Query: 270 APTC--QYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWN 327
P C + CG + +EHG L + +G + C E++T+IG R + G W
Sbjct: 664 -PVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGH-RSITCIHGVWT 721
Query: 328 GTEPQCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSN---ELKCGLGGDW 384
PQC+ + + S I+ + ++ + G C + G W
Sbjct: 722 QL-PQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCRGKEGWIHTVC-INGRW 779
Query: 385 SGKAPTCKYVD---CGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCM 441
+ C C P I N H G C ++Y ++ G ++
Sbjct: 780 DPEV-NCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQEG---EEITC 835
Query: 442 RDGKWSGDTPSCELITCPEPEVPKGGYV----VGYDLNVHST-LEFHCEPGHLLVGQASL 496
+DG+W E I C +P + G + + H T L + CE G + +
Sbjct: 836 KDGRWQSIPLCVEKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENET 895
Query: 497 KCTRQGDWDN 506
C G W +
Sbjct: 896 TCY-MGKWSS 904
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 112/286 (39%), Gaps = 28/286 (9%)
Query: 238 KLGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTC--QYVDCGKLEHIEHGTVTLETTR 295
K+G + ++C G +VG + C + P C Q CG + +G V +T
Sbjct: 570 KVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKE 629
Query: 296 TT-HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFD--WCAEPPQISGG--IVT 350
H V Y C+ + + G + C D G+W T P C+ + C + P++ G ++
Sbjct: 630 EYGHSEVVEYYCNPRFLMKGPNKIQCVD-GEWT-TLPVCIVEESTCGDIPELEHGWAQLS 687
Query: 351 TSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVD----CGSPANIDNGH 406
+ G ++C F + G + C + G W+ + P C +D C S I
Sbjct: 688 SPPYYYGDSVEFNCSESFTMIGHRSITC-IHGVWT-QLPQCVAIDKLKKCKSSNLIILEE 745
Query: 407 YSLLNGTTTHGSVAEYTCD-DDYWLEAGAMRRQVCMRDGKWSGDT--PSCELITCPEPEV 463
+ H S Y C + W+ VC+ +G+W + ++ CP P
Sbjct: 746 HLKNKKEFDHNSNIRYRCRGKEGWIHT------VCI-NGRWDPEVNCSMAQIQLCPPPPQ 798
Query: 464 PKGGYVVGYDLNVH--STLEFHCEPGHLLVGQASLKCTRQGDWDNM 507
+ + LN + C+ +L+ + C + G W ++
Sbjct: 799 IPNSHNMTTTLNYRDGEKVSVLCQENYLIQEGEEITC-KDGRWQSI 843
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 72/193 (37%), Gaps = 31/193 (16%)
Query: 219 NCGSPDRHLNTTFVGTVNTKL--GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYV 276
+C +P N V +K G + Y C + G C G WT P C+
Sbjct: 1029 SCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTE-PPQCKDS 1087
Query: 277 --DCGKLEHIEHGTVTLETTRTTHGAVAI-YACHENYTLIGETRRVCGDGGKWNGTEPQC 333
CG I++G +T A ++ Y C Y L G R C + G+W+ P+C
Sbjct: 1088 TGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRN-GQWS-EPPKC 1145
Query: 334 LFDWCAEPPQISGGIVTTSG------------RRTGSVATYSCEPGFILFG-SNELKCGL 380
L P IS I+ RTG + C+ G+ L S+ L+
Sbjct: 1146 L-----HPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTC 1200
Query: 381 GGDWSGKA--PTC 391
W GK PTC
Sbjct: 1201 ---WDGKLEYPTC 1210
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 137/330 (41%), Gaps = 34/330 (10%)
Query: 193 GGRGWL--------WN-DVGCKLDYLHWICQHNPANCGSPDRHLNTTFVGTVNTKLGSTI 243
G GW+ W+ +V C + + +C P P+ H TT T+N + G +
Sbjct: 765 GKEGWIHTVCINGRWDPEVNCSMAQIQ-LCPPPPQ---IPNSHNMTT---TLNYRDGEKV 817
Query: 244 SYACPEGNMLVGSATRTCKEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRT---THGA 300
S C E ++ TCK+G W + + + C + IEHGT+ + HG
Sbjct: 818 SVLCQENYLIQEGEEITCKDGRWQSIPLCVEKIPCSQPPQIEHGTINSSRSSQESYAHGT 877
Query: 301 VAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVT--TSGRRTGS 358
Y C + + E C GKW+ + PQC C PP+IS G+V + + G
Sbjct: 878 KLSYTCEGGFRISEENETTCY-MGKWS-SPPQCEGLPCKSPPEISHGVVAHMSDSYQYGE 935
Query: 359 VATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVDCGSPANIDNG-HYSLLNGTTTHG 417
TY C GF + G KC LG WS P+C DC S + +N G
Sbjct: 936 EVTYKCFEGFGIDGPAIAKC-LGEKWS-HPPSCIKTDCLSLPSFENAIPMGEKKDVYKAG 993
Query: 418 SVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVH 477
YTC Y ++ + V + +W+G P+C +C P + Y+V ++ +
Sbjct: 994 EQVTYTCATYYKMDGAS---NVTCINSRWTG-RPTCRDTSCVNPPTVQNAYIVSRQMSKY 1049
Query: 478 ST---LEFHCEPGHLLVGQASLKCTRQGDW 504
+ + + C + + G + C G+W
Sbjct: 1050 PSGERVRYQCRSPYEMFGDEEVMCL-NGNW 1078
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 90/238 (37%), Gaps = 14/238 (5%)
Query: 240 GSTISYACPEGNMLVGSATRTCKEGFWTGVAP--TCQYVDCGKLEHIEHGTVTLETTRT- 296
G+ Y C G +G+ C++G W + P CQ CG GT TL
Sbjct: 27 GTQAIYKCRPGYRSLGNVIMVCRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVF 86
Query: 297 THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT 356
+G A+Y C+E Y L+GE D W P C C G + +S
Sbjct: 87 EYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEP 146
Query: 357 ------GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLL 410
G + C G+ + G E+ C G WS + P C + C SP ++ NG
Sbjct: 147 DREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSP-DVINGSPISQ 205
Query: 411 NGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGGY 468
+Y C+ Y E VC G W PSCE +C P +P G Y
Sbjct: 206 KIIYKENERFQYKCNMGY--EYSERGDAVCTESG-WR-PLPSCEEKSCDNPYIPNGDY 259
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 16/206 (7%)
Query: 341 PPQISGGIVTTS----GRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAP--TCKYV 394
PP+ + I+T S G+ A Y C PG+ G+ + C G+W P C+
Sbjct: 7 PPRRNTEILTGSWSDQTYPEGTQAIYKCRPGYRSLGNVIMVC-RKGEWVALNPLRKCQKR 65
Query: 395 DCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSC 453
CG P + G ++L G +G A YTC++ Y L G + + C DG W+ D P C
Sbjct: 66 PCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQL-LGEINYRECDTDG-WTNDIPIC 123
Query: 454 ELITCPEPEVPKGGYVVGY----DLNVH--STLEFHCEPGHLLVGQASLKCTRQGDWDNM 507
E++ C P+ G +V D H + F C G+ + G + C+ G W
Sbjct: 124 EVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKE 183
Query: 508 SPQFISFYFPPSETISAVSEAQTLGY 533
P+ + + I+ +Q + Y
Sbjct: 184 KPKCVEISCKSPDVINGSPISQKIIY 209
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 125/364 (34%), Gaps = 82/364 (22%)
Query: 213 CQHNPANCGSP-DRHLNT-TFVGTVNTKLGSTISYACPEGNMLVGSAT-RTCKEGFWTGV 269
CQ P CG P D T T G + G Y C EG L+G R C WT
Sbjct: 62 CQKRP--CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTND 119
Query: 270 APTCQYVDCGKLEHIEHGTVT---LETTRTTH-GAVAIYACHENYTLIGETRRVCGDGGK 325
P C+ V C + E+G + +E R H G + C+ Y + G+ C D G
Sbjct: 120 IPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGF 179
Query: 326 WNGTEPQCLFDWCAEPPQISG------------------------------GIVTTSG-- 353
W+ +P+C+ C P I+G + T SG
Sbjct: 180 WSKEKPKCVEISCKSPDVINGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESGWR 239
Query: 354 --------------------------RRTGSVATYSCEPGFI-LFGSNELKCGLGGDWSG 386
RTG TY C GF N KC G W
Sbjct: 240 PLPSCEEKSCDNPYIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTG-WI- 297
Query: 387 KAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVA-----EYTCDDDYWLEAGAMRRQV-C 440
AP C C P +I +G N + VA Y CD+ + +G+ + C
Sbjct: 298 PAPRCTLKPCDYP-DIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHC 356
Query: 441 MRDGKWSGDTPSCELITCPEPEVPKG-GYVVGYDLNVHSTLEFHCEPGHLLV-GQASLKC 498
+DG WS P L C P + G G +++ C PG+ L Q ++ C
Sbjct: 357 TQDG-WSPAVPC--LRKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTC 413
Query: 499 TRQG 502
G
Sbjct: 414 MENG 417
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 98/224 (43%), Gaps = 23/224 (10%)
Query: 304 YACHENY-TLIGET--RRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR---RTG 357
Y CH+ Y + G T VCG G W+ P C C E P+I +V + + G
Sbjct: 516 YECHDGYESNTGSTTGSIVCGYNG-WSDL-PICYEREC-ELPKIDVHLVPDRKKDQYKVG 572
Query: 358 SVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCK--YVDCGSPANIDNGHYSLLNGTTT 415
V +SC+PGF + G N ++C G S P CK CG P + NG+
Sbjct: 573 EVLKFSCKPGFTIVGPNSVQCYHFG-LSPDLPICKEQVQSCGPPPELLNGNVKEKTKEEY 631
Query: 416 -HGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSC--ELITCPE-PEVPKG-GYVV 470
H V EY C+ + ++ + V DG+W+ P C E TC + PE+ G +
Sbjct: 632 GHSEVVEYYCNPRFLMKGPNKIQCV---DGEWT-TLPVCIVEESTCGDIPELEHGWAQLS 687
Query: 471 GYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQFISF 514
++EF+C ++G S+ C G W + PQ ++
Sbjct: 688 SPPYYYGDSVEFNCSESFTMIGHRSITCI-HGVWTQL-PQCVAI 729
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 113/310 (36%), Gaps = 24/310 (7%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGST--ISYACPEGNMLVGSATRTCKEGFWTGV 269
IC+ +CG P LN + G + + Y C ++ G C +G WT +
Sbjct: 604 ICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVDGEWTTL 663
Query: 270 APTC--QYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWN 327
P C + CG + +EHG L + +G + C E++T+IG R + G W
Sbjct: 664 -PVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGH-RSITCIHGVWT 721
Query: 328 GTEPQCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSN---ELKCGLGGDW 384
PQC+ + + S I+ + ++ + G C + G W
Sbjct: 722 QL-PQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCRGKEGWIHTVC-INGRW 779
Query: 385 SGKAPTCKYVD---CGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCM 441
+ C C P I N H G C ++Y ++ G ++
Sbjct: 780 DPEV-NCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQEG---EEITC 835
Query: 442 RDGKWSGDTPSCELITCPEPEVPKGGYV----VGYDLNVHST-LEFHCEPGHLLVGQASL 496
+DG+W E I C +P + G + + H T L + CE G + +
Sbjct: 836 KDGRWQSIPLCVEKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENET 895
Query: 497 KCTRQGDWDN 506
C G W +
Sbjct: 896 TCY-MGKWSS 904
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 112/286 (39%), Gaps = 28/286 (9%)
Query: 238 KLGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTC--QYVDCGKLEHIEHGTVTLETTR 295
K+G + ++C G +VG + C + P C Q CG + +G V +T
Sbjct: 570 KVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKE 629
Query: 296 TT-HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFD--WCAEPPQISGG--IVT 350
H V Y C+ + + G + C D G+W T P C+ + C + P++ G ++
Sbjct: 630 EYGHSEVVEYYCNPRFLMKGPNKIQCVD-GEWT-TLPVCIVEESTCGDIPELEHGWAQLS 687
Query: 351 TSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVD----CGSPANIDNGH 406
+ G ++C F + G + C + G W+ + P C +D C S I
Sbjct: 688 SPPYYYGDSVEFNCSESFTMIGHRSITC-IHGVWT-QLPQCVAIDKLKKCKSSNLIILEE 745
Query: 407 YSLLNGTTTHGSVAEYTCD-DDYWLEAGAMRRQVCMRDGKWSGDT--PSCELITCPEPEV 463
+ H S Y C + W+ VC+ +G+W + ++ CP P
Sbjct: 746 HLKNKKEFDHNSNIRYRCRGKEGWIHT------VCI-NGRWDPEVNCSMAQIQLCPPPPQ 798
Query: 464 PKGGYVVGYDLNVH--STLEFHCEPGHLLVGQASLKCTRQGDWDNM 507
+ + LN + C+ +L+ + C + G W ++
Sbjct: 799 IPNSHNMTTTLNYRDGEKVSVLCQENYLIQEGEEITC-KDGRWQSI 843
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 72/193 (37%), Gaps = 31/193 (16%)
Query: 219 NCGSPDRHLNTTFVGTVNTKL--GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYV 276
+C +P N V +K G + Y C + G C G WT P C+
Sbjct: 1029 SCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTE-PPQCKDS 1087
Query: 277 --DCGKLEHIEHGTVTLETTRTTHGAVAI-YACHENYTLIGETRRVCGDGGKWNGTEPQC 333
CG I++G +T A ++ Y C Y L G R C + G+W+ P+C
Sbjct: 1088 TGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRN-GQWS-EPPKC 1145
Query: 334 LFDWCAEPPQISGGIVTTSG------------RRTGSVATYSCEPGFILFG-SNELKCGL 380
L P IS I+ RTG + C+ G+ L S+ L+
Sbjct: 1146 L-----HPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTC 1200
Query: 381 GGDWSGKA--PTC 391
W GK PTC
Sbjct: 1201 ---WDGKLEYPTC 1210
>pdb|1G40|A Chain A, Crystal Structure Of A Complement Protein That Regulates
Both Pathways Of Complement Activation And Binds Heparan
Sulfate Proteoglycans
pdb|1G40|B Chain B, Crystal Structure Of A Complement Protein That Regulates
Both Pathways Of Complement Activation And Binds Heparan
Sulfate Proteoglycans
pdb|1G44|A Chain A, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1G44|B Chain B, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1G44|C Chain C, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1RID|A Chain A, Vaccinia Complement Protein In Complex With Heparin
pdb|1RID|B Chain B, Vaccinia Complement Protein In Complex With Heparin
pdb|1Y8E|A Chain A, Vcp:suramin Complex
pdb|1Y8E|B Chain B, Vcp:suramin Complex
Length = 244
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 332 QCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGD----WSGK 387
QC+ C P I G + G GS TYSC G+ L G ++ C LG W+ +
Sbjct: 61 QCIKRRCPSPRDIDNGQLDIGGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPE 120
Query: 388 APTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWS 447
AP C+ V C SP +I NG ++ T GSV Y+C+ Y L + V G+WS
Sbjct: 121 APICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNS---GVLCSGGEWS 177
Query: 448 GDTPSCELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLL 490
D P+C+++ CP P + G G+ + + ++F C+ G+ L
Sbjct: 178 -DPPTCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKL 221
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 12/180 (6%)
Query: 220 CGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKEG-----FWTGVAPTCQ 274
C SP R ++ + GS+I+Y+C G L+G + C+ G W AP C+
Sbjct: 67 CPSP-RDIDNGQLDIGGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEAPICE 125
Query: 275 YVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCL 334
V C I +G T G+V Y+C+ Y+LIG + +C GG+W+ P C
Sbjct: 126 SVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEWS-DPPTCQ 183
Query: 335 FDWCAEPPQISGGIVTTSGRRTGSV---ATYSCEPGFILFGSNELKCGLGGDWSGKAPTC 391
C P IS G +++ +R+ S + C+ G+ L GS+ C G W + P C
Sbjct: 184 IVKCPH-PTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWKPELPKC 242
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 240 GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRT-TH 298
GS ++Y+C G L+G++ C G W+ PTCQ V C I +G ++ R+ ++
Sbjct: 150 GSVVTYSCNSGYSLIGNSGVLCSGGEWSD-PPTCQIVKCPH-PTISNGYLSSGFKRSYSY 207
Query: 299 GAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCL 334
+ C Y L G + C G W P+C+
Sbjct: 208 NDNVDFKCKYGYKLSGSSSSTCSPGNTWKPELPKCV 243
>pdb|1NTJ|A Chain A, Model Of Rat Crry Determined By Solution Scattering, Curve
Fitting And Homology Modelling
Length = 320
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 107/252 (42%), Gaps = 32/252 (12%)
Query: 226 HLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYVDCGKL 281
H+NT + + GS+I+Y C EG L+GS++ C + W AP C+ + C
Sbjct: 78 HVNT------DIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIP 131
Query: 282 EHIEHGTVTLETTRTTH-GAVAIYACHEN------YTLIGETRRVC----GDGGKWNGTE 330
I +G H G V Y C+ + + L+GE C G G W+G
Sbjct: 132 PSIPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPP 191
Query: 331 PQCLFDWCAEPPQISGGIVTTSGRRTGSV---ATYSCEPGFILFGSNELKCGLGGDWSGK 387
PQC+ PP + ++ + + S+ + C+ GF++ G + + C W +
Sbjct: 192 PQCIELNKCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEPQ 251
Query: 388 APTC-KYVDCGS-PANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGK 445
P+C K CG+ + NGH + G+ + C+ Y L+ + C+ DG
Sbjct: 252 LPSCFKVKSCGAFLGELPNGHV-FVPQNLQLGAKVTFVCNTGYQLKGNSSSH--CVLDGV 308
Query: 446 ---WSGDTPSCE 454
W+ P CE
Sbjct: 309 ESIWNSSVPVCE 320
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 112/284 (39%), Gaps = 23/284 (8%)
Query: 239 LGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTTH 298
+G+++ Y C G + + WT C C ++G V + T
Sbjct: 27 VGTSLKYECRPGYIKRQFSITCEVNSVWTSPQDVCIRKQCETPLDPQNGIVHVNTD-IRF 85
Query: 299 GAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRR 355
G+ Y C+E Y LIG + +C W+ P C C PP I G + R
Sbjct: 86 GSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPPSIPNGDFFSPNRE 145
Query: 356 T---GSVATYSC------EPGFILFGSNELKC----GLGGDWSGKAPTCKYVDCGSPANI 402
G V TY C + F L G + C G G WSG P C ++ +P ++
Sbjct: 146 DFHYGMVVTYQCNTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQCIELNKCTPPHV 205
Query: 403 DNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSC-ELITCPE 460
+N N + + + E+ C D + ++ + C +W PSC ++ +C
Sbjct: 206 ENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDS--SVYCRSLNRWEPQLPSCFKVKSCGA 263
Query: 461 --PEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQG 502
E+P G V +L + + + F C G+ L G +S C G
Sbjct: 264 FLGELPNGHVFVPQNLQLGAKVTFVCNTGYQLKGNSSSHCVLDG 307
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 92/228 (40%), Gaps = 19/228 (8%)
Query: 299 GAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIV-TTSGRRTG 357
G Y C Y + + C W + C+ C P GIV + R G
Sbjct: 28 GTSLKYECRPGY-IKRQFSITCEVNSVWTSPQDVCIRKQCETPLDPQNGIVHVNTDIRFG 86
Query: 358 SVATYSCEPGFILFGSNELKCGLGGD---WSGKAPTCKYVDCGSPANIDNGHYSLLNGTT 414
S TY+C G+ L GS+ C + W +AP C+ + C P +I NG + N
Sbjct: 87 SSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPPSIPNGDFFSPNRED 146
Query: 415 TH-GSVAEYTCDDD-----YWLEAGAMRRQVCMRDGK---WSGDTPSC-ELITCPEPEVP 464
H G V Y C+ D + G DG+ WSG P C EL C P V
Sbjct: 147 FHYGMVVTYQCNTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQCIELNKCTPPHV- 205
Query: 465 KGGYVVGYDLNVHS---TLEFHCEPGHLLVGQASLKCTRQGDWDNMSP 509
+ +V + ++ S +EF C+ G ++ G +S+ C W+ P
Sbjct: 206 ENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEPQLP 253
>pdb|2QFG|A Chain A, Solution Structure Of The N-Terminal Scr-15 FRAGMENT OF
Complement Factor H
Length = 312
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 90/238 (37%), Gaps = 14/238 (5%)
Query: 240 GSTISYACPEGNMLVGSATRTCKEGFWTGVAP--TCQYVDCGKLEHIEHGTVTLETTRT- 296
G+ Y C G +G+ C++G W + P CQ CG GT TL
Sbjct: 29 GTQAIYKCRPGYRSLGNVIMVCRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVF 88
Query: 297 THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT 356
+G A+Y C+E Y L+GE D W P C C G + +S
Sbjct: 89 EYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEP 148
Query: 357 ------GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLL 410
G + C G+ + G E+ C G WS + P C + C SP ++ NG
Sbjct: 149 DREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSP-DVINGSPISQ 207
Query: 411 NGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGGY 468
+Y C+ Y E VC G W PSCE +C P +P G Y
Sbjct: 208 KIIYKENERFQYKCNMGY--EYSERGDAVCTESG-WR-PLPSCEEKSCDNPYIPNGDY 261
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 17/213 (7%)
Query: 335 FDWCAE-PPQISGGIVTTS----GRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAP 389
F+ C E PP+ + I+T S G+ A Y C PG+ G+ + C G+W P
Sbjct: 2 FEDCNELPPRRNTEILTGSWSDQTYPEGTQAIYKCRPGYRSLGNVIMVC-RKGEWVALNP 60
Query: 390 --TCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKW 446
C+ CG P + G ++L G +G A YTC++ Y L G + + C DG W
Sbjct: 61 LRKCQKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQL-LGEINYRECDTDG-W 118
Query: 447 SGDTPSCELITCPEPEVPKGGYVVGY----DLNVH--STLEFHCEPGHLLVGQASLKCTR 500
+ D P CE++ C P+ G +V D H + F C G+ + G + C+
Sbjct: 119 TNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSD 178
Query: 501 QGDWDNMSPQFISFYFPPSETISAVSEAQTLGY 533
G W P+ + + I+ +Q + Y
Sbjct: 179 DGFWSKEKPKCVEISCKSPDVINGSPISQKIIY 211
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 5/132 (3%)
Query: 239 LGSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTT 297
G + + C G + G C + GFW+ P C + C K + +G+ +
Sbjct: 154 FGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISC-KSPDVINGSPISQKIIYK 212
Query: 298 HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR-RT 356
Y C+ Y VC + G W P C C P +G + RT
Sbjct: 213 ENERFQYKCNMGYEYSERGDAVCTESG-WRPL-PSCEEKSCDNPYIPNGDYSPLRIKHRT 270
Query: 357 GSVATYSCEPGF 368
G TY C GF
Sbjct: 271 GDEITYQCRNGF 282
>pdb|2XRB|A Chain A, Structure Of The N-Terminal Four Domains Of The Complement
Regulator Rat Crry
pdb|2XRD|A Chain A, Structure Of The N-Terminal Four Domains Of The Complement
Regulator Rat Crry
Length = 290
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 91/223 (40%), Gaps = 19/223 (8%)
Query: 304 YACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIV-TTSGRRTGSVATY 362
Y C Y + + C W + C+ C P GIV + R GS TY
Sbjct: 66 YECRPGY-IKRQFSITCEVNSVWTSPQDVCIRKQCETPLDPQNGIVHVNTDIRFGSSITY 124
Query: 363 SCEPGFILFGSNELKCGLGGD---WSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTH-GS 418
+C G+ L GS+ C + W +AP C+ + C P +I NG + N H G
Sbjct: 125 TCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPPSIPNGDFFSPNREDFHYGM 184
Query: 419 VAEYTCDDD-----YWLEAGAMRRQVCMRDGK---WSGDTPSC-ELITCPEPEVPKGGYV 469
V Y C+ D + G DG+ WSG P C EL C P V + +
Sbjct: 185 VVTYQCNTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQCIELNKCTPPHV-ENAVI 243
Query: 470 VGYDLNVHS---TLEFHCEPGHLLVGQASLKCTRQGDWDNMSP 509
V + ++ S +EF C+ G ++ G +S+ C W+ P
Sbjct: 244 VSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEPQLP 286
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 24/184 (13%)
Query: 226 HLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYVDCGKL 281
H+NT + + GS+I+Y C EG L+GS++ C + W AP C+ + C
Sbjct: 111 HVNT------DIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIP 164
Query: 282 EHIEHGTVTLETTRTTH-GAVAIYACHEN------YTLIGETRRVC----GDGGKWNGTE 330
I +G H G V Y C+ + + L+GE C G G W+G
Sbjct: 165 PSIPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPP 224
Query: 331 PQCLFDWCAEPPQISGGIVTTSGRRTGSV---ATYSCEPGFILFGSNELKCGLGGDWSGK 387
PQC+ PP + ++ + + S+ + C+ GF++ G + + C W +
Sbjct: 225 PQCIELNKCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEPQ 284
Query: 388 APTC 391
P+C
Sbjct: 285 LPSC 288
>pdb|2C8I|E Chain E, Complex Of Echovirus Type 12 With Domains 1, 2, 3 And 4 Of
Its Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 316
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 123/316 (38%), Gaps = 28/316 (8%)
Query: 219 NCGSPDRHLNT--TFVGTVNTKLGSTISYACPEGNMLVGSATRT--CKEGF-WTGVAPTC 273
+CG P N G + + I+Y C E + + + C +G W+ + C
Sbjct: 2 DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFC 61
Query: 274 -QYVDCGKLEHIEHGTVTLE-TTRTTHGAVAIYACHENYTLI-GETRRV-CGDGGKWNGT 329
+ DCG + + LE T V Y C E++ I GE V C G +W+
Sbjct: 62 NRSQDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDI 121
Query: 330 EPQCLFDWCAEPPQISGG-----IVTTSGRRTGSVATYSCEPGFILFGS--NELKCGLGG 382
E C C P +++ +T + G+V Y C PG+ S +L C
Sbjct: 122 EEFCNRS-CEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNL 180
Query: 383 DWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMR 442
WS CK C +P I NG + G G+ ++C+ Y L C+
Sbjct: 181 KWSTAVEFCKKKSCPNPGEIRNGQIDVPGGIL-FGATISFSCNTGYKLFGST--SSFCLI 237
Query: 443 DG---KWSGDTPSCELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLLVGQASLK 497
G +WS P C I CP P G + G ++ + C G ++G+ S+
Sbjct: 238 SGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIY 297
Query: 498 CT---RQGDWDNMSPQ 510
CT +G+W P+
Sbjct: 298 CTVNNDEGEWSGPPPE 313
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 100/262 (38%), Gaps = 17/262 (6%)
Query: 277 DCGKLEHIEHGTVTLE-TTRTTHGAVAIYACHENYTLI-GETRRV-CGDGGKWNGTEPQC 333
DCG + + LE T V Y C E++ I GE V C G +W+ E C
Sbjct: 2 DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFC 61
Query: 334 LFDW-CAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFG--SNELKCGLGGDWSGK 387
C PP + GR + +V TY CE F+ + + C G WS
Sbjct: 62 NRSQDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDI 121
Query: 388 APTCKYVDCGSPANIDNGHYSLLNGTTTH---GSVAEYTCDDDYWLEAGAMRRQVCMRDG 444
C C P +++ T + G+V EY C Y E + C+++
Sbjct: 122 EEFCNR-SCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNL 180
Query: 445 KWSGDTPSCELITCPEP-EVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQG- 502
KWS C+ +CP P E+ G V + +T+ F C G+ L G S C G
Sbjct: 181 KWSTAVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGS 240
Query: 503 --DWDNMSPQFISFYFPPSETI 522
W + P+ Y P I
Sbjct: 241 SVQWSDPLPECREIYCPAPPQI 262
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 19/235 (8%)
Query: 173 SWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHNPANCGSPDR----HLN 228
S+ +D Y E++ V + G + + G + + C + C P R L
Sbjct: 85 SFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRS---CEVPTRLNSASLK 141
Query: 229 TTFVGTVNTKLGSTISYACPEGNMLVGSATR--TCKEGF-WTGVAPTCQYVDCGKLEHIE 285
++ +G+ + Y C G S + TC + W+ C+ C I
Sbjct: 142 QPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIR 201
Query: 286 HGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPP 342
+G + + GA ++C+ Y L G T C G +W+ P+C +C PP
Sbjct: 202 NGQIDVPGG-ILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPP 260
Query: 343 QISGGIVTTSGRRTG--SVATYSCEPGFILFGSNELKCGLG---GDWSGKAPTCK 392
QI GI+ G TY+C GF + G + + C + G+WSG P C+
Sbjct: 261 QIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECR 315
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 67/165 (40%), Gaps = 13/165 (7%)
Query: 299 GAVAIYACHENYTLIGE--TRRVCGDGGKWNGTEPQCLFDWCAEPPQISGG-IVTTSGRR 355
G V Y C Y + C KW+ C C P +I G I G
Sbjct: 153 GTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGIL 212
Query: 356 TGSVATYSCEPGFILFGSNELKCGLGG---DWSGKAPTCKYVDCGSPANIDNGHYSLLNG 412
G+ ++SC G+ LFGS C + G WS P C+ + C +P IDNG ++ G
Sbjct: 213 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNG---IIQG 269
Query: 413 TTTHGSVAE---YTCDDDY-WLEAGAMRRQVCMRDGKWSGDTPSC 453
H + Y C+ + + ++ V +G+WSG P C
Sbjct: 270 ERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPEC 314
>pdb|3ERB|A Chain A, The Crystal Structure Of C2b, A Fragment Of Complement
Component C2 Produced During C3-Convertase Formation
Length = 223
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 81/193 (41%), Gaps = 16/193 (8%)
Query: 338 CAEPPQISGGIVTTS-GRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPT------ 390
C + ISGG T S G GS+ TYSC G ++ L C G W T
Sbjct: 4 CPQNVNISGGTFTLSHGWAPGSLLTYSCPQGLYPSPASRL-CKSSGQWQTPGATRSLSKA 62
Query: 391 -CKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGD 449
CK V C +P + +NG Y+ G+ G + C+D + L +R+ C +G W G+
Sbjct: 63 VCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDGFILRGSPVRQ--CRPNGMWDGE 120
Query: 450 TPSCE--LITCPEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNM 507
T C+ CP P + G G+ + + C +L G + +C G W
Sbjct: 121 TAVCDNGAGHCPNPGISLGAVRTGFRFGHGDKVRYRCSSNLVLTGSSERECQGNGVWSGT 180
Query: 508 SP---QFISFYFP 517
P Q S+ FP
Sbjct: 181 EPICRQPYSYDFP 193
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 67/163 (41%), Gaps = 11/163 (6%)
Query: 240 GSTISYACPEGNMLVGSATRTCKE-GFWTGVAPT-------CQYVDCGKLEHIEHGTVTL 291
GS ++Y+CP+G + A+R CK G W T C+ V C E+G T
Sbjct: 24 GSLLTYSCPQG-LYPSPASRLCKSSGQWQTPGATRSLSKAVCKPVRCPAPVSFENGIYTP 82
Query: 292 ETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEP-PQISGGIVT 350
G + C + + L G R C G W+G C P P IS G V
Sbjct: 83 RLGSYPVGGNVSFECEDGFILRGSPVRQCRPNGMWDGETAVCDNGAGHCPNPGISLGAVR 142
Query: 351 TSGR-RTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCK 392
T R G Y C +L GS+E +C G WSG P C+
Sbjct: 143 TGFRFGHGDKVRYRCSSNLVLTGSSERECQGNGVWSGTEPICR 185
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 12/141 (8%)
Query: 199 WNDVGCKLDYLHWICQHNPANCGSPDRHLNTTFVGTVNT-KLGSTISYACPEGNMLVGSA 257
W G +C+ P C +P N + + + +G +S+ C +G +L GS
Sbjct: 50 WQTPGATRSLSKAVCK--PVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDGFILRGSP 107
Query: 258 TRTCK-EGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTT----HGAVAIYACHENYTL 312
R C+ G W G C H + ++L RT HG Y C N L
Sbjct: 108 VRQCRPNGMWDGETAVCD----NGAGHCPNPGISLGAVRTGFRFGHGDKVRYRCSSNLVL 163
Query: 313 IGETRRVCGDGGKWNGTEPQC 333
G + R C G W+GTEP C
Sbjct: 164 TGSSERECQGNGVWSGTEPIC 184
>pdb|2WII|C Chain C, Complement C3b In Complex With Factor H Domains 1-4
Length = 277
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 16/206 (7%)
Query: 341 PPQISGGIVTTS----GRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAP--TCKYV 394
PP+ + I+T S G+ A Y C PG+ G+ + C G+W P C+
Sbjct: 12 PPRRNTEILTGSWSDQTYPEGTQAIYKCRPGYRSLGNIIMVC-RKGEWVALNPLRKCQKR 70
Query: 395 DCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSC 453
CG P + G ++L G +G A YTC++ Y L G + + C DG W+ D P C
Sbjct: 71 PCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQL-LGEINYRECDTDG-WTNDIPIC 128
Query: 454 ELITCPEPEVPKGGYVVGY----DLNVH--STLEFHCEPGHLLVGQASLKCTRQGDWDNM 507
E++ C P+ G +V D H + F C G+ + G + C+ G W
Sbjct: 129 EVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKE 188
Query: 508 SPQFISFYFPPSETISAVSEAQTLGY 533
P+ + + I+ +Q + Y
Sbjct: 189 KPKCVEISCKSPDVINGSPISQKIIY 214
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 83/224 (37%), Gaps = 14/224 (6%)
Query: 240 GSTISYACPEGNMLVGSATRTCKEGFWTGVAP--TCQYVDCGKLEHIEHGTVTLETTRT- 296
G+ Y C G +G+ C++G W + P CQ CG GT TL
Sbjct: 32 GTQAIYKCRPGYRSLGNIIMVCRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVF 91
Query: 297 THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT 356
+G A+Y C+E Y L+GE D W P C C G + +S
Sbjct: 92 EYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEP 151
Query: 357 ------GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLL 410
G + C G+ + G E+ C G WS + P C + C SP ++ NG
Sbjct: 152 DREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSP-DVINGSPISQ 210
Query: 411 NGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCE 454
+Y C+ Y E VC G W PSCE
Sbjct: 211 KIIYKENERFQYKCNMGY--EYSERGDAVCTESG-WR-PLPSCE 250
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 83/218 (38%), Gaps = 19/218 (8%)
Query: 298 HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEP--QCLFDWCAEPPQISGGIVTTSGRR 355
G AIY C Y +G VC G +W P +C C P G T +G
Sbjct: 31 EGTQAIYKCRPGYRSLGNIIMVCRKG-EWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGN 89
Query: 356 T---GSVATYSCEPGFILFGS-NELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHY---S 408
G A Y+C G+ L G N +C G W+ P C+ V C +NG +
Sbjct: 90 VFEYGVKAVYTCNEGYQLLGEINYRECDTDG-WTNDIPICEVVKCLPVTAPENGKIVSSA 148
Query: 409 LLNGTTTH-GSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGG 467
+ H G + C+ Y +E C DG WS + P C I+C P+V G
Sbjct: 149 MEPDREYHFGQAVRFVCNSGYKIEGD--EEMHCSDDGFWSKEKPKCVEISCKSPDVINGS 206
Query: 468 YV---VGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQG 502
+ + Y N ++ C G+ + CT G
Sbjct: 207 PISQKIIYKEN--ERFQYKCNMGYEYSERGDAVCTESG 242
>pdb|3O8E|B Chain B, Structure Of Extracelllar Portion Of Cd46 In Complex With
Adenovirus Type 11 Knob
pdb|3O8E|D Chain D, Structure Of Extracelllar Portion Of Cd46 In Complex With
Adenovirus Type 11 Knob
Length = 252
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 85/231 (36%), Gaps = 17/231 (7%)
Query: 238 KLGSTISYACPEGNMLVGS-ATRTC--KEGFWTGVAP-TCQYVDCGKLEHIEHGTVTLET 293
++G + Y C +G + AT T + W V+ C C + +G
Sbjct: 21 EIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPAN 80
Query: 294 TRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVT 350
G + C+E Y LIGE C G W+G P C C PP+I G T
Sbjct: 81 GTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKVLCTPPPKIKNGKHT 140
Query: 351 TSGRRTGS---VATYSCEPG-----FILFGSNELKCGLGGDWSGKAPTCKYVDCGSPANI 402
S TYSC+P F L G + + CG WS AP CK V C P
Sbjct: 141 FSEVEVFEYLDAVTYSCDPAPGPDPFSLIGESTIYCGDNSVWSRAAPECKVVKCRFPVVE 200
Query: 403 DNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSC 453
+ S + + + CD ++L+ VC + W P C
Sbjct: 201 NGKQISGFGKKFYYKATVMFECDKGFYLDGS--DTIVCDSNSTWDPPVPKC 249
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 90/223 (40%), Gaps = 18/223 (8%)
Query: 304 YACHENYTLIGE--TRRVCGDGGKW-NGTEPQCLFDWCA---EPPQISGGIVTTSG-RRT 356
Y C + Y I T +C W ++ C + C +P ++G V +G
Sbjct: 28 YKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDP--LNGQAVPANGTYEF 85
Query: 357 GSVATYSCEPGFILFGSNELKCGLGGD---WSGKAPTCKYVDCGSPANIDNGHYSLLN-G 412
G + C G+ L G L C L G WSGK P C+ V C P I NG ++
Sbjct: 86 GYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKVLCTPPPKIKNGKHTFSEVE 145
Query: 413 TTTHGSVAEYTCDDDYWLEAGAMRRQ---VCMRDGKWSGDTPSCELITCPEPEVPKGGYV 469
+ Y+CD + ++ + C + WS P C+++ C P V G +
Sbjct: 146 VFEYLDAVTYSCDPAPGPDPFSLIGESTIYCGDNSVWSRAAPECKVVKCRFPVVENGKQI 205
Query: 470 VGYDLNVH--STLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQ 510
G+ + +T+ F C+ G L G ++ C WD P+
Sbjct: 206 SGFGKKFYYKATVMFECDKGFYLDGSDTIVCDSNSTWDPPVPK 248
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 242 TISYAC-----PEGNMLVGSATRTCKE-GFWTGVAPTCQYVDCGKLEHIEHGT-VTLETT 294
++Y+C P+ L+G +T C + W+ AP C+ V C + +E+G ++
Sbjct: 152 AVTYSCDPAPGPDPFSLIGESTIYCGDNSVWSRAAPECKVVKC-RFPVVENGKQISGFGK 210
Query: 295 RTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCL 334
+ + A ++ C + + L G VC W+ P+CL
Sbjct: 211 KFYYKATVMFECDKGFYLDGSDTIVCDSNSTWDPPVPKCL 250
>pdb|1OJV|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJV|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJW|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJW|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|C Chain C, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|D Chain D, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK1|A Chain A, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK1|B Chain B, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK2|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK2|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK9|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK9|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|3J24|B Chain B, Cryoem Reconstruction Of Complement Decay-Accelerating
Factor
Length = 254
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 99/252 (39%), Gaps = 22/252 (8%)
Query: 277 DCGKLEHIEHGTVTLE-TTRTTHGAVAIYACHENYTLI-GETRRV-CGDGGKWNGTEPQC 333
DCG + + LE T V Y C E++ I GE V C G +W+ E C
Sbjct: 3 DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFC 62
Query: 334 LFDWCAEPPQISGG-----IVTTSGRRTGSVATYSCEPGFILFGS--NELKCGLGGDWSG 386
C P +++ +T + G+V Y C PG+ S +L C WS
Sbjct: 63 NRS-CEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWST 121
Query: 387 KAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDG-- 444
CK C +P I NG + G G+ ++C+ Y L C+ G
Sbjct: 122 AVEFCKKKSCPNPGEIRNGQIDVPGGIL-FGATISFSCNTGYKLFGST--SSFCLISGSS 178
Query: 445 -KWSGDTPSCELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLLVGQASLKCT-- 499
+WS P C I CP P G + G ++ + C G ++G+ S+ CT
Sbjct: 179 VQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVN 238
Query: 500 -RQGDWDNMSPQ 510
+G+W P+
Sbjct: 239 NDEGEWSGPPPE 250
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 19/235 (8%)
Query: 173 SWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHNPANCGSPDR----HLN 228
S+ +D Y E++ V + G + + G + + C + C P R L
Sbjct: 22 SFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRS---CEVPTRLNSASLK 78
Query: 229 TTFVGTVNTKLGSTISYACPEGNMLVGSATR--TCKEGF-WTGVAPTCQYVDCGKLEHIE 285
++ +G+ + Y C G S + TC + W+ C+ C I
Sbjct: 79 QPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIR 138
Query: 286 HGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPP 342
+G + + GA ++C+ Y L G T C G +W+ P+C +C PP
Sbjct: 139 NGQIDVPGG-ILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPP 197
Query: 343 QISGGIVTTSGRRTG--SVATYSCEPGFILFGSNELKCGLG---GDWSGKAPTCK 392
QI GI+ G TY+C GF + G + + C + G+WSG P C+
Sbjct: 198 QIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECR 252
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 75/197 (38%), Gaps = 13/197 (6%)
Query: 338 CAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFG--SNELKCGLGGDWSGKAPTCK 392
C PP + GR + +V TY CE F+ + + C G WS C
Sbjct: 4 CGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCN 63
Query: 393 YVDCGSPANIDNGHYSLLNGTTTH---GSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGD 449
C P +++ T + G+V EY C Y E + C+++ KWS
Sbjct: 64 R-SCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTA 122
Query: 450 TPSCELITCPEP-EVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQG---DWD 505
C+ +CP P E+ G V + +T+ F C G+ L G S C G W
Sbjct: 123 VEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWS 182
Query: 506 NMSPQFISFYFPPSETI 522
+ P+ Y P I
Sbjct: 183 DPLPECREIYCPAPPQI 199
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 67/165 (40%), Gaps = 13/165 (7%)
Query: 299 GAVAIYACHENYTLIGE--TRRVCGDGGKWNGTEPQCLFDWCAEPPQISGG-IVTTSGRR 355
G V Y C Y + C KW+ C C P +I G I G
Sbjct: 90 GTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGIL 149
Query: 356 TGSVATYSCEPGFILFGSNELKCGLGG---DWSGKAPTCKYVDCGSPANIDNGHYSLLNG 412
G+ ++SC G+ LFGS C + G WS P C+ + C +P IDNG ++ G
Sbjct: 150 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNG---IIQG 206
Query: 413 TTTHGSVAE---YTCDDDY-WLEAGAMRRQVCMRDGKWSGDTPSC 453
H + Y C+ + + ++ V +G+WSG P C
Sbjct: 207 ERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPEC 251
>pdb|3IYP|F Chain F, The Interaction Of Decay-Accelerating Factor With
Echovirus 7
Length = 381
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 99/252 (39%), Gaps = 22/252 (8%)
Query: 277 DCGKLEHIEHGTVTLE-TTRTTHGAVAIYACHENYTLI-GETRRV-CGDGGKWNGTEPQC 333
DCG + + LE T V Y C E++ I GE V C G +W+ E C
Sbjct: 35 DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFC 94
Query: 334 LFDWCAEPPQISGG-----IVTTSGRRTGSVATYSCEPGFILFGS--NELKCGLGGDWSG 386
C P +++ +T + G+V Y C PG+ S +L C WS
Sbjct: 95 NRS-CEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWST 153
Query: 387 KAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDG-- 444
CK C +P I NG + G G+ ++C+ Y L C+ G
Sbjct: 154 AVEFCKKKSCPNPGEIRNGQIDVPGGIL-FGATISFSCNTGYKLFGST--SSFCLISGSS 210
Query: 445 -KWSGDTPSCELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLLVGQASLKCT-- 499
+WS P C I CP P G + G ++ + C G ++G+ S+ CT
Sbjct: 211 VQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVN 270
Query: 500 -RQGDWDNMSPQ 510
+G+W P+
Sbjct: 271 NDEGEWSGPPPE 282
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 19/235 (8%)
Query: 173 SWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHNPANCGSPDR----HLN 228
S+ +D Y E++ V + G + + G + + C + C P R L
Sbjct: 54 SFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRS---CEVPTRLNSASLK 110
Query: 229 TTFVGTVNTKLGSTISYACPEGNMLVGSATR--TCKEGF-WTGVAPTCQYVDCGKLEHIE 285
++ +G+ + Y C G S + TC + W+ C+ C I
Sbjct: 111 QPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIR 170
Query: 286 HGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPP 342
+G + + GA ++C+ Y L G T C G +W+ P+C +C PP
Sbjct: 171 NGQIDVPGG-ILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPP 229
Query: 343 QISGGIVTTSGRRTG--SVATYSCEPGFILFGSNELKCGLG---GDWSGKAPTCK 392
QI GI+ G TY+C GF + G + + C + G+WSG P C+
Sbjct: 230 QIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECR 284
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 75/197 (38%), Gaps = 13/197 (6%)
Query: 338 CAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFG--SNELKCGLGGDWSGKAPTCK 392
C PP + GR + +V TY CE F+ + + C G WS C
Sbjct: 36 CGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCN 95
Query: 393 YVDCGSPANIDNGHYSLLNGTTTH---GSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGD 449
C P +++ T + G+V EY C Y E + C+++ KWS
Sbjct: 96 R-SCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTA 154
Query: 450 TPSCELITCPEP-EVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQG---DWD 505
C+ +CP P E+ G V + +T+ F C G+ L G S C G W
Sbjct: 155 VEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWS 214
Query: 506 NMSPQFISFYFPPSETI 522
+ P+ Y P I
Sbjct: 215 DPLPECREIYCPAPPQI 231
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 13/166 (7%)
Query: 299 GAVAIYACHENYTLIGE--TRRVCGDGGKWNGTEPQCLFDWCAEPPQISGG-IVTTSGRR 355
G V Y C Y + C KW+ C C P +I G I G
Sbjct: 122 GTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGIL 181
Query: 356 TGSVATYSCEPGFILFGSNELKCGLGG---DWSGKAPTCKYVDCGSPANIDNGHYSLLNG 412
G+ ++SC G+ LFGS C + G WS P C+ + C +P IDNG ++ G
Sbjct: 182 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNG---IIQG 238
Query: 413 TTTHGSVAE---YTCDDDY-WLEAGAMRRQVCMRDGKWSGDTPSCE 454
H + Y C+ + + ++ V +G+WSG P C
Sbjct: 239 ERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECR 284
>pdb|1M11|R Chain R, Structural Model Of Human Decay-accelerating Factor Bound
To Echovirus 7 From Cryo-electron Microscopy
Length = 243
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 97/246 (39%), Gaps = 22/246 (8%)
Query: 277 DCGKLEHIEHGTVTLE-TTRTTHGAVAIYACHENYTLI-GETRRV-CGDGGKWNGTEPQC 333
DCG + + LE T V Y C E++ I GE V C G +W+ E C
Sbjct: 1 DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFC 60
Query: 334 LFDWCAEPPQISGG-----IVTTSGRRTGSVATYSCEPGFILFGS--NELKCGLGGDWSG 386
C P +++ +T + G+V Y C PG+ S +L C WS
Sbjct: 61 NRS-CEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWST 119
Query: 387 KAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDG-- 444
CK C +P I NG + G G+ ++C+ Y L C+ G
Sbjct: 120 AVEFCKKKSCPNPGEIRNGQIDVPGGIL-FGATISFSCNTGYKLFGST--SSFCLISGSS 176
Query: 445 -KWSGDTPSCELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLLVGQASLKCT-- 499
+WS P C I CP P G + G ++ + C G ++G+ S+ CT
Sbjct: 177 VQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVN 236
Query: 500 -RQGDW 504
+G+W
Sbjct: 237 NDEGEW 242
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 90/228 (39%), Gaps = 19/228 (8%)
Query: 173 SWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHNPANCGSPDR----HLN 228
S+ +D Y E++ V + G + + G + + C + C P R L
Sbjct: 20 SFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRS---CEVPTRLNSASLK 76
Query: 229 TTFVGTVNTKLGSTISYACPEGNMLVGSATR--TCKEGF-WTGVAPTCQYVDCGKLEHIE 285
++ +G+ + Y C G S + TC + W+ C+ C I
Sbjct: 77 QPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIR 136
Query: 286 HGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPP 342
+G + + GA ++C+ Y L G T C G +W+ P+C +C PP
Sbjct: 137 NGQIDVPGG-ILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPP 195
Query: 343 QISGGIVTTSGRRTG--SVATYSCEPGFILFGSNELKCGLG---GDWS 385
QI GI+ G TY+C GF + G + + C + G+WS
Sbjct: 196 QIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWS 243
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 75/197 (38%), Gaps = 13/197 (6%)
Query: 338 CAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFG--SNELKCGLGGDWSGKAPTCK 392
C PP + GR + +V TY CE F+ + + C G WS C
Sbjct: 2 CGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCN 61
Query: 393 YVDCGSPANIDNGHYSLLNGTTTH---GSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGD 449
C P +++ T + G+V EY C Y E + C+++ KWS
Sbjct: 62 R-SCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTA 120
Query: 450 TPSCELITCPEP-EVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQG---DWD 505
C+ +CP P E+ G V + +T+ F C G+ L G S C G W
Sbjct: 121 VEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWS 180
Query: 506 NMSPQFISFYFPPSETI 522
+ P+ Y P I
Sbjct: 181 DPLPECREIYCPAPPQI 197
>pdb|1OK3|A Chain A, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK3|B Chain B, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator
Length = 254
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 98/252 (38%), Gaps = 22/252 (8%)
Query: 277 DCGKLEHIEHGTVTLE-TTRTTHGAVAIYACHENYTLI-GETRRV-CGDGGKWNGTEPQC 333
DCG + + LE T V Y C E++ I GE V C G +W+ E C
Sbjct: 3 DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFC 62
Query: 334 LFDWCAEPPQISGG-----IVTTSGRRTGSVATYSCEPGFILFGS--NELKCGLGGDWSG 386
C P +++ +T + G+V Y C PG+ S +L C WS
Sbjct: 63 NRS-CEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWST 121
Query: 387 KAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDG-- 444
CK C +P I NG + G G+ ++C+ Y L C+ G
Sbjct: 122 AVEFCKKKSCPNPGEIRNGQIDVPGGIL-FGATISFSCNTGYKLFGST--SSFCLISGSS 178
Query: 445 -KWSGDTPSCELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLLVGQASLKCT-- 499
+WS P C I CP P G + G ++ + C G +G+ S+ CT
Sbjct: 179 VQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTXIGEHSIYCTVN 238
Query: 500 -RQGDWDNMSPQ 510
+G+W P+
Sbjct: 239 NDEGEWSGPPPE 250
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 93/235 (39%), Gaps = 19/235 (8%)
Query: 173 SWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHNPANCGSPDR----HLN 228
S+ +D Y E++ V + G + + G + + C + C P R L
Sbjct: 22 SFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRS---CEVPTRLNSASLK 78
Query: 229 TTFVGTVNTKLGSTISYACPEGNMLVGSATR--TCKEGF-WTGVAPTCQYVDCGKLEHIE 285
++ +G+ + Y C G S + TC + W+ C+ C I
Sbjct: 79 QPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIR 138
Query: 286 HGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPP 342
+G + + GA ++C+ Y L G T C G +W+ P+C +C PP
Sbjct: 139 NGQIDVPGG-ILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPP 197
Query: 343 QISGGIVTTSGRRTG--SVATYSCEPGFILFGSNELKCGLG---GDWSGKAPTCK 392
QI GI+ G TY+C GF G + + C + G+WSG P C+
Sbjct: 198 QIDNGIIQGERDHYGYRQSVTYACNKGFTXIGEHSIYCTVNNDEGEWSGPPPECR 252
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 75/197 (38%), Gaps = 13/197 (6%)
Query: 338 CAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFG--SNELKCGLGGDWSGKAPTCK 392
C PP + GR + +V TY CE F+ + + C G WS C
Sbjct: 4 CGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCN 63
Query: 393 YVDCGSPANIDNGHYSLLNGTTTH---GSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGD 449
C P +++ T + G+V EY C Y E + C+++ KWS
Sbjct: 64 R-SCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTA 122
Query: 450 TPSCELITCPEP-EVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQG---DWD 505
C+ +CP P E+ G V + +T+ F C G+ L G S C G W
Sbjct: 123 VEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWS 182
Query: 506 NMSPQFISFYFPPSETI 522
+ P+ Y P I
Sbjct: 183 DPLPECREIYCPAPPQI 199
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 67/165 (40%), Gaps = 13/165 (7%)
Query: 299 GAVAIYACHENYTLIGE--TRRVCGDGGKWNGTEPQCLFDWCAEPPQISGG-IVTTSGRR 355
G V Y C Y + C KW+ C C P +I G I G
Sbjct: 90 GTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGIL 149
Query: 356 TGSVATYSCEPGFILFGSNELKCGLGG---DWSGKAPTCKYVDCGSPANIDNGHYSLLNG 412
G+ ++SC G+ LFGS C + G WS P C+ + C +P IDNG ++ G
Sbjct: 150 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNG---IIQG 206
Query: 413 TTTHGSVAE---YTCDDDY-WLEAGAMRRQVCMRDGKWSGDTPSC 453
H + Y C+ + + ++ V +G+WSG P C
Sbjct: 207 ERDHYGYRQSVTYACNKGFTXIGEHSIYCTVNNDEGEWSGPPPEC 251
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 64/165 (38%), Gaps = 12/165 (7%)
Query: 240 GSTISYACPEGNMLVGSATRTCKE-GFWTGVA---------PTCQYVDCGKLEHIEHGTV 289
G + Y CP G TRTC+ G W+ + C+ + C + E+G
Sbjct: 30 GQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRPHDFENGEY 89
Query: 290 TLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCL--FDWCAEPPQISGG 347
+ + C++ YTL G R C G+W+G C +C+ P G
Sbjct: 90 WPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGT 149
Query: 348 IVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCK 392
S R TY C G L GS C GG WSG P+C+
Sbjct: 150 RKVGSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQ 194
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 67/189 (35%), Gaps = 15/189 (7%)
Query: 355 RTGSVATYSCEPGFILFGSNELKCGLGGDWSG---------KAPTCKYVDCGSPANIDNG 405
+ G Y C GF + C G WS + C+ + C P + +NG
Sbjct: 28 QEGQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRPHDFENG 87
Query: 406 HYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCE--LITCPEPEV 463
Y + + C D Y L A R C +G+WSG T C+ C P +
Sbjct: 88 EYWPRSPYYNVSDEISFHCYDGYTLRGSANR--TCQVNGRWSGQTAICDNGAGYCSNPGI 145
Query: 464 PKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSP--QFISFYFPPSET 521
P G VG + ++ +HC G L G C G W P Q Y P E
Sbjct: 146 PIGTRKVGSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYDTPQEV 205
Query: 522 ISAVSEAQT 530
A + T
Sbjct: 206 AEAFLSSLT 214
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 243 ISYACPEGNMLVGSATRTCK-EGFWTGVAPTCQYVDCG----KLEHIEHGTVTLETTRTT 297
IS+ C +G L GSA RTC+ G W+G C D G I GT + +
Sbjct: 102 ISFHCYDGYTLRGSANRTCQVNGRWSGQTAIC---DNGAGYCSNPGIPIGTRKVGSQYRL 158
Query: 298 HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQ 343
+V Y C TL G RR C +GG W+GTEP C + + PQ
Sbjct: 159 EDSVT-YHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYDTPQ 203
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVA 270
IC + C +P + T VG+ +L +++Y C G L GS RTC+E G W+G
Sbjct: 132 ICDNGAGYCSNPGIPIGTRKVGS-QYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTE 190
Query: 271 PTCQ 274
P+CQ
Sbjct: 191 PSCQ 194
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 64/165 (38%), Gaps = 12/165 (7%)
Query: 240 GSTISYACPEGNMLVGSATRTCKE-GFWTGVA---------PTCQYVDCGKLEHIEHGTV 289
G + Y CP G TRTC+ G W+ + C+ + C + E+G
Sbjct: 40 GQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRPHDFENGEY 99
Query: 290 TLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCL--FDWCAEPPQISGG 347
+ + C++ YTL G R C G+W+G C +C+ P G
Sbjct: 100 WPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGT 159
Query: 348 IVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCK 392
S R TY C G L GS C GG WSG P+C+
Sbjct: 160 RKVGSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQ 204
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 67/189 (35%), Gaps = 15/189 (7%)
Query: 355 RTGSVATYSCEPGFILFGSNELKCGLGGDWSG---------KAPTCKYVDCGSPANIDNG 405
+ G Y C GF + C G WS + C+ + C P + +NG
Sbjct: 38 QEGQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRPHDFENG 97
Query: 406 HYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCE--LITCPEPEV 463
Y + + C D Y L A R C +G+WSG T C+ C P +
Sbjct: 98 EYWPRSPYYNVSDEISFHCYDGYTLRGSANR--TCQVNGRWSGQTAICDNGAGYCSNPGI 155
Query: 464 PKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSP--QFISFYFPPSET 521
P G VG + ++ +HC G L G C G W P Q Y P E
Sbjct: 156 PIGTRKVGSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYDTPQEV 215
Query: 522 ISAVSEAQT 530
A + T
Sbjct: 216 AEAFLSSLT 224
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 243 ISYACPEGNMLVGSATRTCK-EGFWTGVAPTCQYVDCG----KLEHIEHGTVTLETTRTT 297
IS+ C +G L GSA RTC+ G W+G C D G I GT + +
Sbjct: 112 ISFHCYDGYTLRGSANRTCQVNGRWSGQTAIC---DNGAGYCSNPGIPIGTRKVGSQYRL 168
Query: 298 HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQ 343
+V Y C TL G RR C +GG W+GTEP C + + PQ
Sbjct: 169 EDSVT-YHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYDTPQ 213
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVA 270
IC + C +P + T VG+ +L +++Y C G L GS RTC+E G W+G
Sbjct: 142 ICDNGAGYCSNPGIPIGTRKVGS-QYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTE 200
Query: 271 PTCQ 274
P+CQ
Sbjct: 201 PSCQ 204
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 64/165 (38%), Gaps = 12/165 (7%)
Query: 240 GSTISYACPEGNMLVGSATRTCKE-GFWTGVA---------PTCQYVDCGKLEHIEHGTV 289
G + Y CP G TRTC+ G W+ + C+ + C + E+G
Sbjct: 21 GQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRPHDFENGEY 80
Query: 290 TLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCL--FDWCAEPPQISGG 347
+ + C++ YTL G R C G+W+G C +C+ P G
Sbjct: 81 WPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGT 140
Query: 348 IVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCK 392
S R TY C G L GS C GG WSG P+C+
Sbjct: 141 RKVGSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQ 185
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 67/189 (35%), Gaps = 15/189 (7%)
Query: 355 RTGSVATYSCEPGFILFGSNELKCGLGGDWSG---------KAPTCKYVDCGSPANIDNG 405
+ G Y C GF + C G WS + C+ + C P + +NG
Sbjct: 19 QEGQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRPHDFENG 78
Query: 406 HYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCE--LITCPEPEV 463
Y + + C D Y L A R C +G+WSG T C+ C P +
Sbjct: 79 EYWPRSPYYNVSDEISFHCYDGYTLRGSANR--TCQVNGRWSGQTAICDNGAGYCSNPGI 136
Query: 464 PKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSP--QFISFYFPPSET 521
P G VG + ++ +HC G L G C G W P Q Y P E
Sbjct: 137 PIGTRKVGSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYDTPQEV 196
Query: 522 ISAVSEAQT 530
A + T
Sbjct: 197 AEAFLSSLT 205
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 243 ISYACPEGNMLVGSATRTCK-EGFWTGVAPTCQYVDCG----KLEHIEHGTVTLETTRTT 297
IS+ C +G L GSA RTC+ G W+G C D G I GT + +
Sbjct: 93 ISFHCYDGYTLRGSANRTCQVNGRWSGQTAIC---DNGAGYCSNPGIPIGTRKVGSQYRL 149
Query: 298 HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQ 343
+V Y C TL G RR C +GG W+GTEP C + + PQ
Sbjct: 150 EDSVT-YHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYDTPQ 194
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVA 270
IC + C +P + T VG+ +L +++Y C G L GS RTC+E G W+G
Sbjct: 123 ICDNGAGYCSNPGIPIGTRKVGS-QYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTE 181
Query: 271 PTCQ 274
P+CQ
Sbjct: 182 PSCQ 185
>pdb|1E5G|A Chain A, Solution Structure Of Central Cp Module Pair Of A Pox
Virus Complement Inhibitor
Length = 120
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 338 CAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGD----WSGKAPTCKY 393
C P I G + G GS TYSC G+ L G ++ C LG W+ +AP C+
Sbjct: 3 CPSPRDIDNGQLDIGGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEAPICES 62
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSC 453
V C SP +I NG ++ T GSV Y+C+ Y L + V G+WS D P+C
Sbjct: 63 VKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNS---GVLCSGGEWS-DPPTC 118
Query: 454 EL 455
++
Sbjct: 119 QI 120
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 278 CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGK----WNGTEPQC 333
C I++G L+ G+ Y+C+ Y LIGE++ C G WN P C
Sbjct: 3 CPSPRDIDNGQ--LDIGGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEAPIC 60
Query: 334 LFDWCAEPPQISGGIVT--TSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTC 391
C PP IS G GSV TYSC G+ L G++ + C GG+WS PTC
Sbjct: 61 ESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCS-GGEWS-DPPTC 118
Query: 392 K 392
+
Sbjct: 119 Q 119
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 220 CGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKEG-----FWTGVAPTCQ 274
C SP R ++ + GS+I+Y+C G L+G + C+ G W AP C+
Sbjct: 3 CPSP-RDIDNGQLDIGGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEAPICE 61
Query: 275 YVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQC 333
V C I +G T G+V Y+C+ Y+LIG + +C GG+W+ P C
Sbjct: 62 SVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEWS-DPPTC 118
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 396 CGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWL--------EAGAMRRQVCMRDGKWS 447
C SP +IDNG + G GS Y+C+ Y L E G+ V W+
Sbjct: 3 CPSPRDIDNGQLDI--GGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMV------WN 54
Query: 448 GDTPSCELITCPEPEVPKGGYVVGYD--LNVHSTLEFHCEPGHLLVGQASLKCTRQGDWD 505
+ P CE + C P G GY+ S + + C G+ L+G + + C+ G+W
Sbjct: 55 PEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCS-GGEWS 113
Query: 506 N 506
+
Sbjct: 114 D 114
>pdb|2QFH|A Chain A, Solution Structure Of The C-Terminal Scr-1620 FRAGMENT OF
Complement Factor H
Length = 333
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 97/238 (40%), Gaps = 18/238 (7%)
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLF 335
+ C I HG V + +G Y C E + + G C G KW+ P C+
Sbjct: 8 LPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCL-GEKWSHP-PSCIK 65
Query: 336 DWCAEPPQISGGIVTTSGR---RTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCK 392
C P I + + G TY+C + + G++ + C + W+G+ PTC+
Sbjct: 66 TDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTC-INSRWTGR-PTCR 123
Query: 393 YVDCGSPANIDNGH-YSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTP 451
C +P + N + S G Y C Y E +C+ +G W+ + P
Sbjct: 124 DTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPY--EMFGDEEVMCL-NGNWT-EPP 179
Query: 452 SCELIT--CPEPEVPKGGYVVGYDLNVH---STLEFHCEPGHLLVGQASLKCTRQGDW 504
C+ T C P G + + L+V+ S++E+ C+ + L G + C R G W
Sbjct: 180 QCKDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITC-RNGQW 236
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 20/228 (8%)
Query: 238 KLGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYVDCGKLEHIEHG-TVTLETTRT 296
K G ++Y C + G++ TC WTG PTC+ C +++ V+ + ++
Sbjct: 88 KAGEQVTYTCATYYKMDGASNVTCINSRWTG-RPTCRDTSCVNPPTVQNAYIVSRQMSKY 146
Query: 297 THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFD---WCAEPPQISGGIVTT-- 351
G Y C Y + G+ +C +G N TEP D C PP I G +T+
Sbjct: 147 PSGERVRYQCRSPYEMFGDEEVMCLNG---NWTEPPQCKDSTGKCGPPPPIDNGDITSFP 203
Query: 352 -SGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLL 410
S S Y C+ + L G+ + C G WS + P C + S ++N + +L
Sbjct: 204 LSVYAPASSVEYQCQNLYQLEGNKRITC-RNGQWS-EPPKCLHPCVISREIMENYNIALR 261
Query: 411 -----NGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSC 453
+ G E+ C Y L + + + DGK + P+C
Sbjct: 262 WTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKL--EYPTC 307
>pdb|1C1Z|A Chain A, Crystal Structure Of Human Beta-2-Glycoprotein-I
(Apolipoprotein-H)
Length = 326
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 90/241 (37%), Gaps = 17/241 (7%)
Query: 278 CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRR-VCGDGGKWNGTEPQCLFD 336
C K + + TV T G Y+C Y G R+ +C G W +C
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKCTPR 63
Query: 337 WCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVDC 396
C + G V + + ++SC GF L G++ KC G WS + P C + C
Sbjct: 64 VCPFAGILENGAVRYTTFEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPELPVCAPIIC 123
Query: 397 GSPANIDNGHYSLLNGTTTHGSV----AEYTCDDDYWLEAGAMRRQ---VCMRDGKWSGD 449
P+ + + + S+ A + C L AM C G W+
Sbjct: 124 PPPSIPTFATLRVYKPSAGNNSLYRDTAVFEC-----LPQHAMFGNDTITCTTHGNWT-K 177
Query: 450 TPSCELITCPEPEVPKGGYV---VGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDN 506
P C + CP P P G+V L F C G+ L G ++CT+ G+W
Sbjct: 178 LPECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNWSA 237
Query: 507 M 507
M
Sbjct: 238 M 238
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 10/160 (6%)
Query: 241 STISYACPEGNMLVGSATRTC-KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTTHG 299
+TIS++C G L G+ + C +EG W+ P C + C T+ + +
Sbjct: 85 NTISFSCNTGFYLNGADSAKCTEEGKWSPELPVCAPIICPPPSIPTFATLRVYKPSAGNN 144
Query: 300 AV----AIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRR 355
++ A++ C + + G C G W P+C C P + G V +
Sbjct: 145 SLYRDTAVFECLPQHAMFGNDTITCTTHGNWTKL-PECREVKCPFPSRPDNGFVNYPAKP 203
Query: 356 T---GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCK 392
T AT+ C G+ L G E++C G+WS P+CK
Sbjct: 204 TLYYKDKATFGCHDGYSLDGPEEIECTKLGNWSA-MPSCK 242
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
Query: 396 CGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCEL 455
C P ++ L G Y+C Y + G MR+ +C G W +T C
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGY-VSRGGMRKFICPLTGLWPINTLKCTP 62
Query: 456 ITCPEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSP 509
CP + + G V +T+ F C G L G S KCT +G W P
Sbjct: 63 RVCPFAGILENGAVRYTTFEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPELP 116
>pdb|1QUB|A Chain A, Crystal Structure Of The Glycosylated Five-domain Human
Beta2- Glycoprotein I Purified From Blood Plasma
Length = 319
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 90/241 (37%), Gaps = 17/241 (7%)
Query: 278 CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRR-VCGDGGKWNGTEPQCLFD 336
C K + + TV T G Y+C Y G R+ +C G W +C
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKCTPR 63
Query: 337 WCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVDC 396
C + G V + + ++SC GF L G++ KC G WS + P C + C
Sbjct: 64 VCPFAGILENGAVRYTTFEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPELPVCAPIIC 123
Query: 397 GSPANIDNGHYSLLNGTTTHGSV----AEYTCDDDYWLEAGAMRRQ---VCMRDGKWSGD 449
P+ + + + S+ A + C L AM C G W+
Sbjct: 124 PPPSIPTFATLRVYKPSAGNNSLYRDTAVFEC-----LPQHAMFGNDTITCTTHGNWT-K 177
Query: 450 TPSCELITCPEPEVPKGGYV---VGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDN 506
P C + CP P P G+V L F C G+ L G ++CT+ G+W
Sbjct: 178 LPECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNWSA 237
Query: 507 M 507
M
Sbjct: 238 M 238
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 10/160 (6%)
Query: 241 STISYACPEGNMLVGSATRTC-KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTTHG 299
+TIS++C G L G+ + C +EG W+ P C + C T+ + +
Sbjct: 85 NTISFSCNTGFYLNGADSAKCTEEGKWSPELPVCAPIICPPPSIPTFATLRVYKPSAGNN 144
Query: 300 AV----AIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRR 355
++ A++ C + + G C G W P+C C P + G V +
Sbjct: 145 SLYRDTAVFECLPQHAMFGNDTITCTTHGNWTKL-PECREVKCPFPSRPDNGFVNYPAKP 203
Query: 356 T---GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCK 392
T AT+ C G+ L G E++C G+WS P+CK
Sbjct: 204 TLYYKDKATFGCHDGYSLDGPEEIECTKLGNWSA-MPSCK 242
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
Query: 396 CGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCEL 455
C P ++ L G Y+C Y + G MR+ +C G W +T C
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGY-VSRGGMRKFICPLTGLWPINTLKCTP 62
Query: 456 ITCPEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSP 509
CP + + G V +T+ F C G L G S KCT +G W P
Sbjct: 63 RVCPFAGILENGAVRYTTFEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPELP 116
>pdb|1UPN|E Chain E, Complex Of Echovirus Type 12 With Domains 3 And 4 Of Its
Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 129
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 273 CQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGT 329
C+ C I +G + + GA ++C+ Y L G T C G +W+
Sbjct: 2 CKKKSCPNPGEIRNGQIDVPGG-ILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP 60
Query: 330 EPQCLFDWCAEPPQISGGIVTTSGRRTG--SVATYSCEPGFILFGSNELKCGLG---GDW 384
P+C +C PPQI GI+ G TY+C GF + G + + C + G+W
Sbjct: 61 LPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEW 120
Query: 385 SGKAPTCK 392
SG P C+
Sbjct: 121 SGPPPECR 128
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 239 LGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETT 294
G+TIS++C G L GS + C W+ P C+ + C I++G + E
Sbjct: 26 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 85
Query: 295 RTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQC 333
+ YAC++ +T+IGE C D G+W+G P+C
Sbjct: 86 HYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPEC 127
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 333 CLFDWCAEPPQISGG-IVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGG---DWSGKA 388
C C P +I G I G G+ ++SC G+ LFGS C + G WS
Sbjct: 2 CKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPL 61
Query: 389 PTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAE---YTCDDDY-WLEAGAMRRQVCMRDG 444
P C+ + C +P IDNG ++ G H + Y C+ + + ++ V +G
Sbjct: 62 PECREIYCPAPPQIDNG---IIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEG 118
Query: 445 KWSGDTPSCE 454
+WSG P C
Sbjct: 119 EWSGPPPECR 128
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Query: 391 CKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDG---KWS 447
CK C +P I NG + G G+ ++C+ Y L C+ G +WS
Sbjct: 2 CKKKSCPNPGEIRNGQIDVPGGIL-FGATISFSCNTGYKLFGST--SSFCLISGSSVQWS 58
Query: 448 GDTPSCELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLLVGQASLKCT---RQG 502
P C I CP P G + G ++ + C G ++G+ S+ CT +G
Sbjct: 59 DPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEG 118
Query: 503 DWDNMSPQ 510
+W P+
Sbjct: 119 EWSGPPPE 126
>pdb|1H2P|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 299 GAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRR 355
GA ++C+ Y L G T C G +W+ P+C +C PPQI GI+
Sbjct: 23 GATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDH 82
Query: 356 TG--SVATYSCEPGFILFGSNELKCGLG---GDWSGKAPTCK 392
G TY+C GF + G + + C + G+WSG P C+
Sbjct: 83 YGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECR 124
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 219 NCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQ 274
+C +P + N G+TIS++C G L GS + C W+ P C+
Sbjct: 2 SCPNPGQIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECR 61
Query: 275 YVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEP 331
+ C I++G + E + YAC++ +T+IGE C D G+W+G P
Sbjct: 62 EIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPP 121
Query: 332 QC 333
+C
Sbjct: 122 EC 123
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 338 CAEPPQISGG-IVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGG---DWSGKAPTCKY 393
C P QI G I G G+ ++SC G+ LFGS C + G WS P C+
Sbjct: 3 CPNPGQIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECRE 62
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAE---YTCDDDY-WLEAGAMRRQVCMRDGKWSGD 449
+ C +P IDNG ++ G H + Y C+ + + ++ V +G+WSG
Sbjct: 63 IYCPAPPQIDNG---IIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP 119
Query: 450 TPSCE 454
P C
Sbjct: 120 PPECR 124
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 11/123 (8%)
Query: 396 CGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDG---KWSGDTPS 452
C +P I NG + G G+ ++C+ Y L C+ G +WS P
Sbjct: 3 CPNPGQIRNGQIDVPGGIL-FGATISFSCNTGYKLFGST--SSFCLISGSSVQWSDPLPE 59
Query: 453 CELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLLVGQASLKCT---RQGDWDNM 507
C I CP P G + G ++ + C G ++G+ S+ CT +G+W
Sbjct: 60 CREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP 119
Query: 508 SPQ 510
P+
Sbjct: 120 PPE 122
>pdb|1H03|P Chain P, Human Cd55 Domains 3 & 4
pdb|1H03|Q Chain Q, Human Cd55 Domains 3 & 4
pdb|1H2Q|P Chain P, Human Cd55 Domains 3 & 4
pdb|1UOT|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 299 GAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRR 355
GA ++C+ Y L G T C G +W+ P+C +C PPQI GI+
Sbjct: 23 GATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDH 82
Query: 356 TG--SVATYSCEPGFILFGSNELKCGLG---GDWSGKAPTCK 392
G TY+C GF + G + + C + G+WSG P C+
Sbjct: 83 YGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECR 124
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 239 LGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETT 294
G+TIS++C G L GS + C W+ P C+ + C I++G + E
Sbjct: 22 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 81
Query: 295 RTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQC 333
+ YAC++ +T+IGE C D G+W+G P+C
Sbjct: 82 HYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPEC 123
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 338 CAEPPQISGG-IVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGG---DWSGKAPTCKY 393
C P +I G I G G+ ++SC G+ LFGS C + G WS P C+
Sbjct: 3 CPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECRE 62
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAE---YTCDDDY-WLEAGAMRRQVCMRDGKWSGD 449
+ C +P IDNG ++ G H + Y C+ + + ++ V +G+WSG
Sbjct: 63 IYCPAPPQIDNG---IIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP 119
Query: 450 TPSCE 454
P C
Sbjct: 120 PPECR 124
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 11/123 (8%)
Query: 396 CGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDG---KWSGDTPS 452
C +P I NG + G G+ ++C+ Y L C+ G +WS P
Sbjct: 3 CPNPGEIRNGQIDVPGGIL-FGATISFSCNTGYKLFGST--SSFCLISGSSVQWSDPLPE 59
Query: 453 CELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLLVGQASLKCT---RQGDWDNM 507
C I CP P G + G ++ + C G ++G+ S+ CT +G+W
Sbjct: 60 CREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP 119
Query: 508 SPQ 510
P+
Sbjct: 120 PPE 122
>pdb|1H04|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 299 GAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRR 355
GA ++C+ Y L G T C G +W+ P+C +C PPQI GI+
Sbjct: 23 GATISFSCNTGYKLAGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDH 82
Query: 356 TG--SVATYSCEPGFILFGSNELKCGL---GGDWSGKAPTCK 392
G TY+C GF + G + + C + G+WSG P C+
Sbjct: 83 YGYRQSVTYACNKGFTMIGEHSIYCTVNNDAGEWSGPPPECR 124
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 239 LGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETT 294
G+TIS++C G L GS + C W+ P C+ + C I++G + E
Sbjct: 22 FGATISFSCNTGYKLAGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 81
Query: 295 RTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQC 333
+ YAC++ +T+IGE C D G+W+G P+C
Sbjct: 82 HYGYRQSVTYACNKGFTMIGEHSIYCTVNNDAGEWSGPPPEC 123
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 338 CAEPPQISGG-IVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGG---DWSGKAPTCKY 393
C P I+ G I G G+ ++SC G+ L GS C + G WS P C+
Sbjct: 3 CPNPGAIANGQIDVPGGILFGATISFSCNTGYKLAGSTSSFCLISGSSVQWSDPLPECRE 62
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAE---YTCDDDY-WLEAGAMRRQVCMRDGKWSGD 449
+ C +P IDNG ++ G H + Y C+ + + ++ V G+WSG
Sbjct: 63 IYCPAPPQIDNG---IIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDAGEWSGP 119
Query: 450 TPSCE 454
P C
Sbjct: 120 PPECR 124
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 396 CGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDG---KWSGDTPS 452
C +P I NG + G G+ ++C+ Y L AG+ C+ G +WS P
Sbjct: 3 CPNPGAIANGQIDVPGGIL-FGATISFSCNTGYKL-AGSTS-SFCLISGSSVQWSDPLPE 59
Query: 453 CELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLLVGQASLKCT---RQGDWDNM 507
C I CP P G + G ++ + C G ++G+ S+ CT G+W
Sbjct: 60 CREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDAGEWSGP 119
Query: 508 SPQ 510
P+
Sbjct: 120 PPE 122
>pdb|1GKG|A Chain A, Structure Determination And Rational Mutagenesis Reveal
Binding Surface Of Immune Adherence Receptor, Cr1 (Cd35)
Length = 136
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 58/135 (42%), Gaps = 25/135 (18%)
Query: 338 CAEPPQISGGIV-TTSGRRTGSVATYSCEPGFILFGSNELKCGLGGD---WSGKAPTCKY 393
C PP G+V + + GS TYSC G L G + +C L G+ WS K P C+
Sbjct: 7 CKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQR 66
Query: 394 VDCGSPANIDNGHYSLLNGTTTH-GSVAEYTCDDDYWLEAGAMRRQV----------CMR 442
+ CG P I NG + N H GSV Y C+ G+ R+V C
Sbjct: 67 IPCGLPPTIANGDFISTNRENFHYGSVVTYRCN------LGSRGRKVFELVGEPSIYCTS 120
Query: 443 D----GKWSGDTPSC 453
+ G WSG P C
Sbjct: 121 NDDQVGIWSGPAPQC 135
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 219 NCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQ 274
+C +P +N + ++GS I+Y+C G+ L+G ++ C W+ P CQ
Sbjct: 6 SCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQ 65
Query: 275 YVDCGKLEHIEHGTVTLETTRTTH-GAVAIYACH------ENYTLIGETRRVCGDG---- 323
+ CG I +G H G+V Y C+ + + L+GE C
Sbjct: 66 RIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQV 125
Query: 324 GKWNGTEPQCL 334
G W+G PQC+
Sbjct: 126 GIWSGPAPQCI 136
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 299 GAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRR 355
G+ Y+C + LIG + C G+ W+ P C C PP I+ G ++ R
Sbjct: 27 GSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQRIPCGLPPTIANGDFISTNRE 86
Query: 356 T---GSVATYSCEPG------FILFGSNELKCGLGGD----WSGKAPTC 391
GSV TY C G F L G + C D WSG AP C
Sbjct: 87 NFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQC 135
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 454 ELITCPEPEVPKGGYV-VGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGD---WDNMSP 509
E +C P P G V V D+ V S + + C GH L+G +S +C G+ W P
Sbjct: 3 EAKSCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPP 62
Query: 510 --QFISFYFPPS 519
Q I PP+
Sbjct: 63 ICQRIPCGLPPT 74
>pdb|2RLQ|A Chain A, Nmr Structure Of Ccp Modules 2-3 Of Complement Factor H
Length = 129
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 396 CGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCE 454
CG P + G ++L G +G A YTC++ Y L G + + C DG W+ D P CE
Sbjct: 8 CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQL-LGEINYRECDTDG-WTNDIPICE 65
Query: 455 LITCPEPEVPKGGYVVGY----DLNVH--STLEFHCEPGHLLVGQASLKCTRQGDWDNMS 508
++ C P+ G +V D H + F C G+ + G + C+ G W
Sbjct: 66 VVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEK 125
Query: 509 PQFI 512
P+ +
Sbjct: 126 PKCV 129
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 220 CGSP-DRHLNT-TFVGTVNTKLGSTISYACPEGNMLVGSAT-RTCKEGFWTGVAPTCQYV 276
CG P D T T G + G Y C EG L+G R C WT P C+ V
Sbjct: 8 CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVV 67
Query: 277 DCGKLEHIEHGTVT---LETTRTTHGAVAI-YACHENYTLIGETRRVCGDGGKWNGTEPQ 332
C + E+G + +E R H A+ + C+ Y + G+ C D G W+ +P+
Sbjct: 68 KCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPK 127
Query: 333 CL 334
C+
Sbjct: 128 CV 129
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 44/121 (36%), Gaps = 7/121 (5%)
Query: 278 CGKLEHIEHGTVTLETTRT-THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFD 336
CG GT TL +G A+Y C+E Y L+GE D W P C
Sbjct: 8 CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVV 67
Query: 337 WCAEPPQISGGIVTTSGRRT------GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPT 390
C G + +S G + C G+ + G E+ C G WS + P
Sbjct: 68 KCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPK 127
Query: 391 C 391
C
Sbjct: 128 C 128
>pdb|1HFH|A Chain A, Solution Structure Of A Pair Of Complement Modules By
Nuclear Magnetic Resonance
Length = 120
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 338 CAEPPQISGGIVTTSGRRTGSVA-----TYSCEPGFILFGSNELKCGLGGDWSGKAPTCK 392
C++PPQI G + +S S A +Y+CE GF + NE C +G WS P C+
Sbjct: 5 CSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCYMG-KWS-SPPQCE 62
Query: 393 YVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPS 452
+ C SP I +G + ++ + +G Y C + + ++ A+ + C+ + KWS PS
Sbjct: 63 GLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAK--CLGE-KWS-HPPS 118
Query: 453 C 453
C
Sbjct: 119 C 119
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 276 VDCGKLEHIEHGTVTLETTRT---THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQ 332
+ C + IEHGT+ + HG Y C + + E C GKW+ + PQ
Sbjct: 3 IPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTC-YMGKWS-SPPQ 60
Query: 333 CLFDWCAEPPQISGGIVT--TSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPT 390
C C PP+IS G+V + + G TY C GF + G KC LG WS P+
Sbjct: 61 CEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKC-LGEKWS-HPPS 118
Query: 391 C 391
C
Sbjct: 119 C 119
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 227 LNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYVDCGKLEHIEH 286
+N++ + G+ +SY C G + TC G W+ P C+ + C I H
Sbjct: 16 INSSRSSQESYAHGTKLSYTCEGGFRISEENETTCYMGKWSS-PPQCEGLPCKSPPEISH 74
Query: 287 GTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCL 334
G V + +G Y C E + + G C G KW+ P C+
Sbjct: 75 GVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKC-LGEKWSHP-PSCI 120
>pdb|3SW0|X Chain X, Structure Of The C-terminal Region (modules 18-20) Of
Complement Regulator Factor H
Length = 188
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 338 CAEPPQISGGIVTT---SGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYV 394
C PP + + + S +G Y C + +FG E+ C L G+W+ + P CK
Sbjct: 5 CVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMC-LNGNWT-EPPQCKDS 62
Query: 395 --DCGSPANIDNGHY-SLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTP 451
CG P IDNG S S EY C + Y LE +++ R+G+WS + P
Sbjct: 63 TGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGN---KRITCRNGQWS-EPP 118
Query: 452 SC 453
C
Sbjct: 119 KC 120
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 72/193 (37%), Gaps = 31/193 (16%)
Query: 219 NCGSPDRHLNTTFVGTVNTKL--GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYV 276
+C +P N V +K G + Y C + G C G WT P C+
Sbjct: 4 SCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTE-PPQCKDS 62
Query: 277 --DCGKLEHIEHGTVTLETTRTTHGAVAI-YACHENYTLIGETRRVCGDGGKWNGTEPQC 333
CG I++G +T A ++ Y C Y L G R C + G+W+ P+C
Sbjct: 63 TGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRN-GQWS-EPPKC 120
Query: 334 LFDWCAEPPQISGGIVTTSG------------RRTGSVATYSCEPGFILFG-SNELKCGL 380
L P IS I+ RTG + C+ G+ L S+ L+
Sbjct: 121 L-----HPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTC 175
Query: 381 GGDWSGKA--PTC 391
W GK PTC
Sbjct: 176 ---WDGKLEYPTC 185
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 13/122 (10%)
Query: 213 CQHNPANCGSPDRHLN---TTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKEGFWTGV 269
C+ + CG P N T+F +V S++ Y C L G+ TC+ G W+
Sbjct: 59 CKDSTGKCGPPPPIDNGDITSFPLSVYAP-ASSVEYQCQNLYQLEGNKRITCRNGQWSE- 116
Query: 270 APTCQYVDCGKLEHIEHGTVTLETTRTTH-----GAVAIYACHENYTLIGET---RRVCG 321
P C + E +E+ + L T G + C Y L + R C
Sbjct: 117 PPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCW 176
Query: 322 DG 323
DG
Sbjct: 177 DG 178
>pdb|3GOV|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|A Chain A, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|C Chain C, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 155
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 363 SCEPGFILFGSN------ELKCGLGGDWSGKAPTCKYVDCGSPANIDNG--HYSLLNGTT 414
SC+ G+ + N +++C G WS K PTCK VDC +P +++G +S N T
Sbjct: 35 SCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKIVDCRAPGELEHGLITFSTRNNLT 94
Query: 415 THGSVAEYTCDDDYW 429
T+ S +Y+C + Y+
Sbjct: 95 TYKSEIKYSCQEPYY 109
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 262 KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTR--TTHGAVAIYACHENY 310
K+G W+ PTC+ VDC +EHG +T T TT+ + Y+C E Y
Sbjct: 58 KDGTWSNKIPTCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPY 108
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 19/141 (13%)
Query: 277 DCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRV------CGDGGKWNGTE 330
+C +L+ HG + + + +C Y ++ + + C G W+
Sbjct: 7 ECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKI 66
Query: 331 PQCLFDWCAEPPQISGGIVTTSGRRT----GSVATYSC-EPGFILFGSNE--LKCGLGGD 383
P C C P ++ G++T S R S YSC EP + + +N C G
Sbjct: 67 PTCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGV 126
Query: 384 WSGKA-----PTCKYVDCGSP 399
W K PTC V CG P
Sbjct: 127 WMNKVLGRSLPTCLPV-CGLP 146
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 363 SCEPGFILFGSN------ELKCGLGGDWSGKAPTCKYVDCGSPANIDNG--HYSLLNGTT 414
SC+ G+ + N +++C G WS K PTCK VDC +P +++G +S N T
Sbjct: 35 SCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKIVDCRAPGELEHGLITFSTRNNLT 94
Query: 415 THGSVAEYTCDDDYW 429
T+ S +Y+C + Y+
Sbjct: 95 TYKSEIKYSCQEPYY 109
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 262 KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTR--TTHGAVAIYACHENY 310
K+G W+ PTC+ VDC +EHG +T T TT+ + Y+C E Y
Sbjct: 58 KDGTWSNKIPTCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPY 108
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 19/154 (12%)
Query: 277 DCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRV------CGDGGKWNGTE 330
+C +L+ HG + + + +C Y ++ + + C G W+
Sbjct: 7 ECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKI 66
Query: 331 PQCLFDWCAEPPQISGGIVTTSGRRT----GSVATYSC-EPGFILFGSNE--LKCGLGGD 383
P C C P ++ G++T S R S YSC EP + + +N C G
Sbjct: 67 PTCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGV 126
Query: 384 WSGKA-----PTCKYVDCGSPANIDNGHYSLLNG 412
W K PTC V CG P + NG
Sbjct: 127 WMNKVLGRSLPTCLPV-CGLPKFSRKLMAQIFNG 159
>pdb|1VVC|A Chain A, C-Terminal Half Of Vaccinia Virus Complement Control
Protein, Nmr, Minimized Average Structure
pdb|1VVD|A Chain A, C-Terminal Half Of Vaccinia Virus Complement Control
Protein, Nmr, 21 Structures
pdb|1VVE|A Chain A, C-Terminal Half Of Vaccinia Virus Complement Control
Protein, Nmr, 21 Structures
Length = 118
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSC 453
V C SP +I NG ++ T GSV Y+C+ Y L + V G+WS D P+C
Sbjct: 1 VKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNS---GVLCSGGEWS-DPPTC 56
Query: 454 ELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLL 490
+++ CP P + G G+ + + ++F C+ G+ L
Sbjct: 57 QIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKL 95
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLF 335
V C I +G T G+V Y+C+ Y+LIG + +C GG+W+ P C
Sbjct: 1 VKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEWS-DPPTCQI 58
Query: 336 DWCAEPPQISGGIVTTSGRRTGSV---ATYSCEPGFILFGSNELKCGLGGDWSGKAPTC 391
C P IS G +++ +R+ S + C+ G+ L GS+ C G W + P C
Sbjct: 59 VKCPH-PTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWKPELPKC 116
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 240 GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRT-TH 298
GS ++Y+C G L+G++ C G W+ PTCQ V C I +G ++ R+ ++
Sbjct: 24 GSVVTYSCNSGYSLIGNSGVLCSGGEWSD-PPTCQIVKC-PHPTISNGYLSSGFKRSYSY 81
Query: 299 GAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCL 334
+ C Y L G + C G W P+C+
Sbjct: 82 NDNVDFKCKYGYKLSGSSSSTCSPGNTWKPELPKCV 117
>pdb|1GHQ|B Chain B, Cr2-C3d Complex Structure
pdb|1GHQ|C Chain C, Cr2-C3d Complex Structure
Length = 134
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 11/120 (9%)
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMR----DGKWSGD 449
+ CGSP I NG S + G+V Y+C + L + +C+ DG W
Sbjct: 2 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLI--GEKSLLCITKDKVDGTWDKP 59
Query: 450 TPSCELI----TCPEPEVPKGGYVVGYDLNVH-STLEFHCEPGHLLVGQASLKCTRQGDW 504
P CE +CPEP VP G + G H ++ F C+ + G S+ C W
Sbjct: 60 APKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMW 119
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC----GDGGKWNGTEP 331
+ CG I +G ++ +T G V Y+C + LIGE +C G W+ P
Sbjct: 2 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 332 QC----LFDWCAEPPQISGG--IVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDW- 384
+C + C E P + GG I ++ R G T++C+ F + G+ + C W
Sbjct: 62 KCEYFNKYSSCPE-PIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWG 120
Query: 385 SGKAPTCKYV 394
+ PTC V
Sbjct: 121 PTRLPTCVSV 130
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 10/126 (7%)
Query: 219 NCGSPDRHLNTTF-VGTVNTKLGSTISYACPEGNMLVGSATRTC-----KEGFWTGVAPT 272
+CGSP LN + +G+ I Y+C L+G + C +G W AP
Sbjct: 3 SCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPK 62
Query: 273 CQYVD--CGKLEHIEHGTVTLE-TTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGT 329
C+Y + E I G + +T HG +AC N+++ G C W T
Sbjct: 63 CEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPT 122
Query: 330 E-PQCL 334
P C+
Sbjct: 123 RLPTCV 128
>pdb|3OED|C Chain C, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
pdb|3OED|D Chain D, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
Length = 135
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 11/120 (9%)
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMR----DGKWSGD 449
+ CGSP I NG S + G+V Y+C + L + +C+ DG W
Sbjct: 3 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLI--GEKSLLCITKDKVDGTWDKP 60
Query: 450 TPSCELI----TCPEPEVPKGGYVVGYDLNVH-STLEFHCEPGHLLVGQASLKCTRQGDW 504
P CE +CPEP VP G + G H ++ F C+ + G S+ C W
Sbjct: 61 APKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMW 120
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC----GDGGKWNGTEP 331
+ CG I +G ++ +T G V Y+C + LIGE +C G W+ P
Sbjct: 3 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 62
Query: 332 QC----LFDWCAEPPQISGG--IVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDW- 384
+C + C E P + GG I ++ R G T++C+ F + G+ + C W
Sbjct: 63 KCEYFNKYSSCPE-PIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWG 121
Query: 385 SGKAPTCKYV 394
+ PTC V
Sbjct: 122 PTRLPTCVSV 131
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 10/126 (7%)
Query: 219 NCGSPDRHLNTTF-VGTVNTKLGSTISYACPEGNMLVGSATRTC-----KEGFWTGVAPT 272
+CGSP LN + +G+ I Y+C L+G + C +G W AP
Sbjct: 4 SCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPK 63
Query: 273 CQYVD--CGKLEHIEHGTVTLE-TTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGT 329
C+Y + E I G + +T HG +AC N+++ G C W T
Sbjct: 64 CEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPT 123
Query: 330 E-PQCL 334
P C+
Sbjct: 124 RLPTCV 129
>pdb|2A55|A Chain A, Solution Structure Of The Two N-Terminal Ccp Modules Of
C4b- Binding Protein (C4bp) Alpha-Chain
Length = 133
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 338 CAEPPQISGG----IVTTSGR-RTGSVATYSCEPGFILFGSNE-LKCGLGGDWSGKAPTC 391
C PP +S I T R +TG+ Y+C PG++ S + L C G+W C
Sbjct: 3 CGPPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVYNT-FC 61
Query: 392 KYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRR-QVCMRDGKWSGDT 450
Y C P + NG + + GS E++C + ++L R +V R WS
Sbjct: 62 IYKRCRHPGELRNGQVEI-KTDLSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSHPL 120
Query: 451 PSCELI 456
P CE++
Sbjct: 121 PQCEIL 126
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 394 VDCGSPANIDNGHYSLLNGTTTH---GSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDT 450
++CG P + + T T G+ +YTC Y + + + + C DG+W +T
Sbjct: 1 MNCGPPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGY-VRSHSTQTLTCNSDGEWVYNT 59
Query: 451 PSCELITCPEP-EVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGD---WDN 506
C C P E+ G + DL+ S +EF C G L+G + +C Q W +
Sbjct: 60 -FCIYKRCRHPGELRNGQVEIKTDLSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSH 118
Query: 507 MSPQ 510
PQ
Sbjct: 119 PLPQ 122
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 13/125 (10%)
Query: 219 NCGSPDR-----HLNTTFVGTVNTKLGSTISYACPEGNMLVGSA-TRTC-KEGFWTGVAP 271
NCG P ++ T T K G+T+ Y C G + S T TC +G W
Sbjct: 2 NCGPPPTLSFAAPMDITLTET-RFKTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWV-YNT 59
Query: 272 TCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNG 328
C Y C + +G V ++T + G+ ++C E + LIG T C G W+
Sbjct: 60 FCIYKRCRHPGELRNGQVEIKTD-LSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSH 118
Query: 329 TEPQC 333
PQC
Sbjct: 119 PLPQC 123
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 219 NCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCK---EGF-WTGVAPTCQ 274
C P N + GS I ++C EG L+GS T C+ G W+ P C+
Sbjct: 65 RCRHPGELRNGQVEIKTDLSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSHPLPQCE 124
Query: 275 YVD 277
++
Sbjct: 125 ILE 127
>pdb|4FXG|G Chain G, Complement C4 In Complex With Masp-2
pdb|4FXG|I Chain I, Complement C4 In Complex With Masp-2
Length = 154
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 364 CEPGF-ILFGSNELK-----CGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLN--GTTT 415
CE G+ +L G LK C G W P C VDCG P ++ +G + G TT
Sbjct: 38 CETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPGVTT 97
Query: 416 HGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDT-----PSCELI 456
+ +V +Y+C++ ++ + VC DG W+ P CE +
Sbjct: 98 YKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVCEPV 143
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 249 EGNMLVGSATRTC-KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTR--TTHGAVAIYA 305
+G++ + S T C K+G W P C VDCG + + G V T TT+ AV Y+
Sbjct: 46 QGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYS 105
Query: 306 CHEN-YTL-IGETRRVCGDGGKWNGTE 330
C E YT+ + + + VC G W ++
Sbjct: 106 CEETFYTMKVNDGKYVCEADGFWTSSK 132
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 10/119 (8%)
Query: 396 CGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQ----VCMRDGKWSGDTP 451
C P NGH S + C+ Y L G + + VC +DG W P
Sbjct: 10 CPYPMAPPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMP 69
Query: 452 SCELITC-PEPEVPKGG--YVVGYDLNVH-STLEFHCEPGH--LLVGQASLKCTRQGDW 504
+C ++ C P ++P G Y+ G + + + +++ CE + V C G W
Sbjct: 70 ACSIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFW 128
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 458 CPEPEVPKGGYV--VGYDLNVHSTLEFHCEPGH-LLVGQASLK-----CTRQGDWDNMSP 509
CP P P G+V V + + CE G+ LL G LK C + G WD P
Sbjct: 10 CPYPMAPPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMP 69
>pdb|2VUV|A Chain A, Crystal Structure Of Codakine At 1.3a Resolution
pdb|2VUZ|A Chain A, Crystal Structure Of Codakine In Complex With Biantennary
Nonasaccharide At 1.7a Resolution
Length = 129
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
T F CY + K AS+A A+S CQA GG L N L+ + D +
Sbjct: 7 TQFLDLCYIYQSAK-ASWASAQSSCQALGGILAEPDTACENEVLIHMCKENGDA-GSFGP 64
Query: 147 WIGAQKDPGITARTWKWVD-GEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WNDVGC 204
W+G QK G W+W G WG ++PNN G ++C+ + WL WND+ C
Sbjct: 65 WLGGQKVGG----AWQWSSSGAAFDYLRWGXNEPNNSGGNEDCLHYN----WLSWNDLRC 116
Query: 205 KLDYLHWICQ 214
+ +CQ
Sbjct: 117 HYQASY-LCQ 125
>pdb|2LS8|A Chain A, Solution Structure Of Human C-Type Lectin Domain Family 4
Member D
Length = 156
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 88 SFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVW 147
+F NCY F + ++A++ C G L+ F++ L+RR L +
Sbjct: 9 AFQSNCY-FPLTDNKTWAESERNCSGMGAHLMTISTEAEQNFIIQFLDRR-------LSY 60
Query: 148 IGAQKDPGITARTWKWVDGEVVT--KPSWGKDQPNNYNGEQNCVVLDGGRG-WLWNDVGC 204
+D + W+WVD + W K++P+N GE NCVVL + W WNDV C
Sbjct: 61 FLGLRDENAKGQ-WRWVDQTPFNPRRVFWHKNEPDNSQGE-NCVVLVYNQDKWAWNDVPC 118
Query: 205 KLD 207
+
Sbjct: 119 NFE 121
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 364 CEPGF-ILFGSNELK-----CGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLN--GTTT 415
CE G+ +L G LK C G W P C VDCG P ++ +G + G TT
Sbjct: 45 CETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPGVTT 104
Query: 416 HGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEP 461
+ +V +Y+C++ ++ + VC DG W+ L C EP
Sbjct: 105 YKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVC-EP 149
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 245 YACPEGNMLVGSATRTC-KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTR--TTHGAV 301
Y +G++ + S T C K+G W P C VDCG + + G V T TT+ AV
Sbjct: 49 YELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPGVTTYKAV 108
Query: 302 AIYACHEN-YTL-IGETRRVCGDGGKWNGTE 330
Y+C E YT+ + + + VC G W ++
Sbjct: 109 IQYSCEETFYTMKVNDGKYVCEADGFWTSSK 139
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 458 CPEPEVPKGGYV--VGYDLNVHSTLEFHCEPGH-LLVGQASLK-----CTRQGDWDNMSP 509
CP P P G+V V + + CE G+ LL G LK C + G WD P
Sbjct: 17 CPYPMAPPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMP 76
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 12/99 (12%)
Query: 319 VCGDGGKWNGTEPQCLFDWCAEPPQISGG---IVTTSGRRT-GSVATYSCEPGFILFGSN 374
VC G W+ P C C P + G +T G T +V YSCE F N
Sbjct: 64 VCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVN 123
Query: 375 ELK--CGLGGDWSGKA-----PTCKYVDCGSPANIDNGH 406
+ K C G W+ P C+ V CG A G
Sbjct: 124 DGKYVCEADGFWTSSKGEKSLPVCEPV-CGLSARTTGGQ 161
>pdb|2ATY|A Chain A, Complement Receptor Chimaeric Conjugate Cr2-Ig
pdb|2ATY|B Chain B, Complement Receptor Chimaeric Conjugate Cr2-Ig
Length = 376
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWL--EAGAMRRQVCMRDGKWSGDTP 451
+ CGSP I NG S + G+V Y+C + L E + DG W P
Sbjct: 2 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 452 SCELI----TCPEPEVPKGGYVVGYDLNVH-STLEFHCEPGHLLVGQASLKCTRQGDW 504
CE +CPEP VP G + G H ++ F C+ + G S+ C W
Sbjct: 62 KCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMW 119
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC----GDGGKWNGTEP 331
+ CG I +G ++ +T G V Y+C + LIGE +C G W+ P
Sbjct: 2 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 332 QC----LFDWCAEPPQISGG--IVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDW- 384
+C + C E P + GG I ++ R G T++C+ F + G+ + C W
Sbjct: 62 KCEYFNKYSSCPE-PIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWG 120
Query: 385 SGKAPTCKYV 394
+ PTC V
Sbjct: 121 PTRLPTCVSV 130
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 10/126 (7%)
Query: 219 NCGSPDRHLNTTF-VGTVNTKLGSTISYACPEGNMLVGSATRTC-----KEGFWTGVAPT 272
+CGSP LN + +G+ I Y+C L+G + C +G W AP
Sbjct: 3 SCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPK 62
Query: 273 CQYVD--CGKLEHIEHGTVTLE-TTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGT 329
C+Y + E I G + +T HG +AC N+++ G C W T
Sbjct: 63 CEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPT 122
Query: 330 E-PQCL 334
P C+
Sbjct: 123 RLPTCV 128
>pdb|2RLP|A Chain A, Nmr Structure Of Ccp Modules 1-2 Of Complement Factor H
Length = 129
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 357 GSVATYSCEPGFILFGSNELKCGLGGDWSGKAP--TCKYVDCGSPANIDNGHYSLLNGTT 414
G+ A Y C PG+ G+ + C G+W P C+ CG P + G ++L G
Sbjct: 32 GTQAIYKCRPGYRSLGNVIMVC-RKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNV 90
Query: 415 -THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCE 454
+G A YTC++ Y L G + + C DG W+ D P CE
Sbjct: 91 FEYGVKAVYTCNEGYQL-LGEINYRECDTDG-WTNDIPICE 129
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 240 GSTISYACPEGNMLVGSATRTCKEGFWTGVAP--TCQYVDCGKLEHIEHGTVTLETTRT- 296
G+ Y C G +G+ C++G W + P CQ CG GT TL
Sbjct: 32 GTQAIYKCRPGYRSLGNVIMVCRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVF 91
Query: 297 THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQC 333
+G A+Y C+E Y L+GE D W P C
Sbjct: 92 EYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPIC 128
>pdb|1W2R|A Chain A, Solution Structure Of Cr2 Scr 1-2 By X-Ray Scattering
pdb|1W2S|B Chain B, Solution Structure Of Cr2 Scr 1-2 In Its Complex With C3d
By X-Ray Scattering
Length = 142
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 11/120 (9%)
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMR----DGKWSGD 449
+ CGSP I NG S + G+V Y+C + L + +C+ DG W
Sbjct: 5 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLI--GEKSLLCITKDKVDGTWDKP 62
Query: 450 TPSCELI----TCPEPEVPKGGYVVGYDLNVH-STLEFHCEPGHLLVGQASLKCTRQGDW 504
P C+ +CPEP VP G + G H ++ F C+ + G S+ C W
Sbjct: 63 APKCQYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMW 122
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC----GDGGKWNGTEP 331
+ CG I +G ++ +T G V Y+C + LIGE +C G W+ P
Sbjct: 5 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 64
Query: 332 QCL----FDWCAEPPQISGG--IVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDW- 384
+C + C E P + GG I ++ R G T++C+ F + G+ + C W
Sbjct: 65 KCQYFNKYSSCPE-PIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWG 123
Query: 385 SGKAPTCKYV 394
+ PTC V
Sbjct: 124 PTRLPTCVSV 133
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 10/126 (7%)
Query: 219 NCGSPDRHLNTTF-VGTVNTKLGSTISYACPEGNMLVGSATRTC-----KEGFWTGVAPT 272
+CGSP LN + +G+ I Y+C L+G + C +G W AP
Sbjct: 6 SCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPK 65
Query: 273 CQYVD--CGKLEHIEHGTVTLE-TTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGT 329
CQY + E I G + +T HG +AC N+++ G C W T
Sbjct: 66 CQYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPT 125
Query: 330 E-PQCL 334
P C+
Sbjct: 126 RLPTCV 131
>pdb|1LY2|A Chain A, Crystal Structure Of Unliganded Human Cd21 Scr1-Scr2
(Complement Receptor Type 2)
Length = 130
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMR----DGKWSGD 449
CGSP I NG S + G+V Y+C + L + +C+ DG W
Sbjct: 2 ASCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLI--GEKSLLCITKDKVDGTWDKP 59
Query: 450 TPSCELI----TCPEPEVPKGGYVVGYDLNVH-STLEFHCEPGHLLVGQASLKCTRQGDW 504
P CE +CPEP VP G + G H ++ F C+ + G S+ C W
Sbjct: 60 APKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMW 119
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 12/127 (9%)
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC----GDGGKWNGTEP 331
CG I +G ++ +T G V Y+C + LIGE +C G W+ P
Sbjct: 2 ASCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 332 QC----LFDWCAEPPQISGG--IVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDW- 384
+C + C E P + GG I ++ R G T++C+ F + G+ + C W
Sbjct: 62 KCEYFNKYSSCPE-PIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWG 120
Query: 385 SGKAPTC 391
+ PTC
Sbjct: 121 PTRLPTC 127
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Query: 218 ANCGSPDRHLNTTF-VGTVNTKLGSTISYACPEGNMLVGSATRTC-----KEGFWTGVAP 271
A+CGSP LN + +G+ I Y+C L+G + C +G W AP
Sbjct: 2 ASCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 272 TCQYVD--CGKLEHIEHGTVTLE-TTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNG 328
C+Y + E I G + +T HG +AC N+++ G C W
Sbjct: 62 KCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGP 121
Query: 329 TE-PQCL 334
T P C+
Sbjct: 122 TRLPTCV 128
>pdb|1EGG|A Chain A, Structure Of A C-Type Carbohydrate-Recognition Domain
(Crd- 4) From The Macrophage Mannose Receptor
pdb|1EGG|B Chain B, Structure Of A C-Type Carbohydrate-Recognition Domain
(Crd- 4) From The Macrophage Mannose Receptor
pdb|1EGI|A Chain A, Structure Of A C-Type Carbohydrate-Recognition Domain
(Crd- 4) From The Macrophage Mannose Receptor
pdb|1EGI|B Chain B, Structure Of A C-Type Carbohydrate-Recognition Domain
(Crd- 4) From The Macrophage Mannose Receptor
Length = 147
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 18/156 (11%)
Query: 75 RCASEKAASAEITSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGEL 134
+C + AS+ TS Y + ++ ++R C+A GGDL I N E
Sbjct: 4 KCPEDWGASSR-TSLCFKLYAKGKHEKKTWFESRDFCRALGGDLA----SINNK----EE 54
Query: 135 ERRKDRLKTL------LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNC 188
++ RL T L W+G G + + W DG V+ +W +PNNY + C
Sbjct: 55 QQTIWRLITASGSYHKLFWLGLTY--GSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYC 112
Query: 189 VVLDGGRGWLWNDVGCKLDYLHWICQHNPANCGSPD 224
L G WND+ C+ +WICQ PD
Sbjct: 113 GELKGDPTMSWNDINCE-HLNNWICQIQKGQTPKPD 147
>pdb|2XR5|A Chain A, Crystal Structure Of The Complex Of The Carbohydrate
Recognition Domain Of Human Dc-Sign With Pseudo
Dimannoside Mimic
Length = 166
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 85 EITSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
E T F NCY F + ++ D+ + C+ G LV FL + R
Sbjct: 21 EWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSR-----SNR 74
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWND 201
W+G D TW+WVDG + K W + +PNN GE++C G WND
Sbjct: 75 FTWMGL-SDLNQEG-TWQWVDGSPLLPSFKQYWNRGEPNNV-GEEDCAEFSGNG---WND 128
Query: 202 VGCKLDYLHWICQHNPANCGSPDRHL 227
C L WIC+ + A+C +
Sbjct: 129 DKCNLAKF-WICKKSAASCSRDEEQF 153
>pdb|1K9I|A Chain A, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|B Chain B, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|C Chain C, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|D Chain D, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|E Chain E, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|F Chain F, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|G Chain G, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|H Chain H, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|I Chain I, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|J Chain J, Complex Of Dc-Sign And Glcnac2man3
Length = 156
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 85 EITSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
E T F NCY F + ++ D+ + C+ G LV FL + R
Sbjct: 11 EWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSR-----SNR 64
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWND 201
W+G D TW+WVDG + K W + +PNN GE++C G WND
Sbjct: 65 FTWMGL-SDLNQEG-TWQWVDGSPLLPSFKQYWNRGEPNNV-GEEDCAEFSGNG---WND 118
Query: 202 VGCKLDYLHWICQHNPANCGSPDRHL 227
C L WIC+ + A+C +
Sbjct: 119 DKCNLAKF-WICKKSAASCSRDEEQF 143
>pdb|2B6B|D Chain D, Cryo Em Structure Of Dengue Complexed With Crd Of Dc-Sign
Length = 175
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 85 EITSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
E T F NCY F + ++ D+ + C+ G LV FL + R
Sbjct: 30 EWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSR-----SNR 83
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWND 201
W+G TW+WVDG + K W + +PNN GE++C G WND
Sbjct: 84 FTWMGLSDLN--QEGTWQWVDGSPLLPSFKQYWNRGEPNNV-GEEDCAEFSGNG---WND 137
Query: 202 VGCKLDYLHWICQHNPANCGSPDRHL 227
C L WIC+ + A+C +
Sbjct: 138 DKCNLAKF-WICKKSAASCSRDEEQF 162
>pdb|1SL4|A Chain A, Crystal Structure Of Dc-Sign Carbohydrate Recognition
Domain Complexed With Man4
pdb|2IT6|A Chain A, Crystal Structure Of Dcsign-Crd With Man2
Length = 155
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 85 EITSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
E T F NCY F + ++ D+ + C+ G LV FL + R
Sbjct: 10 EWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSR-----SNR 63
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWND 201
W+G D TW+WVDG + K W + +PNN GE++C G WND
Sbjct: 64 FTWMGL-SDLNQEG-TWQWVDGSPLLPSFKQYWNRGEPNNV-GEEDCAEFSGNG---WND 117
Query: 202 VGCKLDYLHWICQHNPANCGSPDRHL 227
C L WIC+ + A+C +
Sbjct: 118 DKCNLAKF-WICKKSAASCSRDEEQF 142
>pdb|1SL5|A Chain A, Crystal Structure Of Dc-Sign Carbohydrate Recognition
Domain Complexed With Lnfp Iii (Dextra L504).
pdb|2IT5|A Chain A, Crystal Structure Of Dcsign-crd With Man6
Length = 139
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 60/139 (43%), Gaps = 16/139 (11%)
Query: 85 EITSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
E T F NCY F + ++ D+ + C+ G LV FL + R
Sbjct: 10 EWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSR-----SNR 63
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWND 201
W+G D TW+WVDG + K W + +PNN GE++C G WND
Sbjct: 64 FTWMGL-SDLNQEG-TWQWVDGSPLLPSFKQYWNRGEPNNV-GEEDCAEFSGNG---WND 117
Query: 202 VGCKLDYLHWICQHNPANC 220
C L WIC+ + A+C
Sbjct: 118 DKCNLAKF-WICKKSAASC 135
>pdb|1NWV|A Chain A, Solution Structure Of A Functionally Active Component Of
Decay Accelerating Factor
pdb|2QZH|A Chain A, Scr23 OF DAF FROM THE NMR STRUCTURE 1NWV FITTED INTO A
Cryoem Reconstruction Of Cvb3-Rd Complexed With Daf
Length = 129
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 417 GSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEP-EVPKGGYVVGYDLN 475
G+V EY C Y E + C+++ KWS C+ +CP P E+ G V +
Sbjct: 28 GTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGIL 87
Query: 476 VHSTLEFHCEPGHLLVGQASLKCTRQG---DWDNMSPQ 510
+T+ F C G+ L G S C G W + P+
Sbjct: 88 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPE 125
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 356 TGSVATYSCEPGFILFGS--NELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGT 413
G+V Y C PG+ S +L C WS CK C +P I NG + G
Sbjct: 27 VGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGG- 85
Query: 414 TTHGSVAEYTCDDDYWLEAGAMRRQVCMRDG---KWSGDTPSCE 454
G+ ++C+ Y L C+ G +WS P C
Sbjct: 86 ILFGATISFSCNTGYKLFGST--SSFCLISGSSVQWSDPLPECR 127
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 299 GAVAIYACHENYTLIGE--TRRVCGDGGKWNGTEPQCLFDWCAEPPQISGG-IVTTSGRR 355
G V Y C Y + C KW+ C C P +I G I G
Sbjct: 28 GTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGIL 87
Query: 356 TGSVATYSCEPGFILFGSNELKCGLGG---DWSGKAPTCK 392
G+ ++SC G+ LFGS C + G WS P C+
Sbjct: 88 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECR 127
>pdb|2QY0|A Chain A, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|C Chain C, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 159
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 21/122 (17%)
Query: 363 SCEPGFILFGSNEL------KCGLGGDWSGKAPTCKYVDCGSPANIDNG--HYSLLNGTT 414
+C+ G+ L N++ C G W P CK DCG P N+ NG Y+ G
Sbjct: 33 TCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTTMGVN 92
Query: 415 THGSVAEYTCDDDYW-LEAGAMRRQ------VCMRDGKWSGDT-----PSCELITCPEPE 462
T+ + +Y C + Y+ ++ A R+ C G W + P C L C +P
Sbjct: 93 TYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRC-LPVCGKPV 151
Query: 463 VP 464
P
Sbjct: 152 NP 153
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 222 SPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTCQYVDCGK 280
P F+ T Y EGN ++ S T C++ G W P C+ DCG+
Sbjct: 21 QPQYQFRDYFIATCKQ------GYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQ 74
Query: 281 LEHIEHGTVTLETTR--TTHGAVAIYACHENY 310
++ +G TT T+ A Y CHE Y
Sbjct: 75 PRNLPNGDFRYTTTMGVNTYKARIQYYCHEPY 106
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 45/123 (36%), Gaps = 25/123 (20%)
Query: 303 IYACHENYTLIGETR------RVCGDGGKWNGTEPQCLFDWCAEPPQISGG---IVTTSG 353
I C + Y LI + VC D G W+ P+C C +P + G TT G
Sbjct: 31 IATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTTMG 90
Query: 354 RRT--GSVATYSCEPGFIL---FGSNE-----LKCGLGGDWSG-----KAPTCKYVDCGS 398
T + Y EP + + GS E C G W K P C V CG
Sbjct: 91 VNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCLPV-CGK 149
Query: 399 PAN 401
P N
Sbjct: 150 PVN 152
>pdb|4B2R|A Chain A, Solution Structure Of Ccp Modules 10-11 Of Complement
Factor H
Length = 126
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 340 EPPQISGGIVTTSGR---RTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCK--YV 394
E P+I +V + + G V +SC+PGF + G N ++C G S P CK
Sbjct: 9 ELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFG-LSPDLPICKEQVQ 67
Query: 395 DCGSPANIDNGHYSLLNGTTT-HGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWS 447
CG P + NG+ H V EY C+ + ++ + V DG+W+
Sbjct: 68 SCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCV---DGEWT 118
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 238 KLGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTC--QYVDCGKLEHIEHGTVTLETTR 295
K+G + ++C G +VG + C + P C Q CG + +G V +T
Sbjct: 27 KVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKE 86
Query: 296 TT-HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFD 336
H V Y C+ + + G + C D G+W T P C+ +
Sbjct: 87 EYGHSEVVEYYCNPRFLMKGPNKIQCVD-GEWT-TLPVCIVE 126
>pdb|2XR6|A Chain A, Crystal Structure Of The Complex Of The Carbohydrate
Recognition Domain Of Human Dc-Sign With Pseudo
Trimannoside Mimic
Length = 170
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 85 EITSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
E T F NCY F + ++ D+ + C+ G LV FL + R
Sbjct: 25 EWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSR-----SNR 78
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWND 201
W+G D TW+WVDG + K W + +PNN GE++C G WND
Sbjct: 79 FTWMGL-SDLNQEG-TWQWVDGSPLLPSFKQYWNRGEPNNV-GEEDCAEFSGNG---WND 132
Query: 202 VGCKLDYLHWICQHNPANCGSPDRHL 227
C L WIC+ + A+ +
Sbjct: 133 DKCNLAKF-WICKKSAASSSRDEEQF 157
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 21/122 (17%)
Query: 363 SCEPGFILFGSNELK------CGLGGDWSGKAPTCKYVDCGSPANIDNG--HYSLLNGTT 414
+C+ G+ L N++ C G W P CK DCG P N+ NG Y+ G
Sbjct: 31 TCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTTMGVN 90
Query: 415 THGSVAEYTCDDDYW-LEAGAMRRQ------VCMRDGKWSGD-----TPSCELITCPEPE 462
T+ + +Y C + Y+ ++ A R+ C G W + P C L C +P
Sbjct: 91 TYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRC-LPVCGKPV 149
Query: 463 VP 464
P
Sbjct: 150 NP 151
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 222 SPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTCQYVDCGK 280
P F+ T Y EGN ++ S T C++ G W P C+ DCG+
Sbjct: 19 QPQYQFRDYFIATCKQ------GYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQ 72
Query: 281 LEHIEHGTVTLETTR--TTHGAVAIYACHENY 310
++ +G TT T+ A Y CHE Y
Sbjct: 73 PRNLPNGDFRYTTTMGVNTYKARIQYYCHEPY 104
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 48/134 (35%), Gaps = 25/134 (18%)
Query: 303 IYACHENYTLIGETR------RVCGDGGKWNGTEPQCLFDWCAEPPQISGG---IVTTSG 353
I C + Y LI + VC D G W+ P+C C +P + G TT G
Sbjct: 29 IATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTTMG 88
Query: 354 RRT--GSVATYSCEPGFIL---FGSNE-----LKCGLGGDWSG-----KAPTCKYVDCGS 398
T + Y EP + + GS E C G W K P C V CG
Sbjct: 89 VNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCLPV-CGK 147
Query: 399 PANIDNGHYSLLNG 412
P N ++ G
Sbjct: 148 PVNPVEQRQQIIGG 161
>pdb|1QDD|A Chain A, Crystal Structure Of Human Lithostathine To 1.3 A
Resolution
Length = 144
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 93 CYEFNIDKGASFADARSKCQ-ASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQ 151
CY FN D+ ++ DA CQ + G+LV F+ + ++ VWIG
Sbjct: 25 CYYFNEDR-ETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLI--KESGTDDFNVWIGLH 81
Query: 152 KDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WNDVGCKLDYLH 210
DP R W W G +V+ SWG P++ N CV L G+ W DV C+ D
Sbjct: 82 -DPKKN-RAWHWSSGSLVSYKSWGIGAPSSVN-PGYCVSLTSSTGFQKWKDVPCE-DKFS 137
Query: 211 WICQ 214
++C+
Sbjct: 138 FVCK 141
>pdb|4B2S|A Chain A, Solution Structure Of Ccp Modules 11-12 Of Complement
Factor H
Length = 127
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 219 NCGSPDRHLNTTFVGTVNTKLGST--ISYACPEGNMLVGSATRTCKEGFWTGVAPTC--Q 274
+CG P LN + G + + Y C ++ G C +G WT + P C +
Sbjct: 9 SCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVDGEWTTL-PVCIVE 67
Query: 275 YVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCL 334
CG + +EHG L + +G + C E++T+IG R + G W PQC+
Sbjct: 68 ESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGH-RSITCIHGVWTQL-PQCV 125
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 338 CAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYV 394
C PP++ G V + V Y C P F++ G N+++C + G+W+ P C
Sbjct: 10 CGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQC-VDGEWT-TLPVCIVE 67
Query: 395 D--CGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPS 452
+ CG +++G L + +G E+ C + + + R + G W+ P
Sbjct: 68 ESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIG---HRSITCIHGVWT-QLPQ 123
Query: 453 CELI 456
C I
Sbjct: 124 CVAI 127
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 396 CGSPANIDNGHYSLLNGTTT-HGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSC- 453
CG P + NG+ H V EY C+ + ++ + V DG+W+ P C
Sbjct: 10 CGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCV---DGEWT-TLPVCI 65
Query: 454 -ELITCPE-PEVPKG-GYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQ 510
E TC + PE+ G + ++EF+C ++G S+ C G W + PQ
Sbjct: 66 VEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITCIH-GVWTQL-PQ 123
Query: 511 FISF 514
++
Sbjct: 124 CVAI 127
>pdb|1LIT|A Chain A, Human Lithostathine
Length = 144
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 93 CYEFNIDKGASFADARSKCQ-ASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQ 151
CY FN D+ ++ DA CQ + G+LV F+ + ++ VWIG
Sbjct: 25 CYYFNEDR-ETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLI--KESGTDDFNVWIGLH 81
Query: 152 KDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WNDVGCKLDYLH 210
DP R W W G +V+ SWG P++ N CV L G+ W DV C+ D
Sbjct: 82 -DPK-KNRRWHWSSGSLVSYKSWGIGAPSSVN-PGYCVSLTSSTGFQKWKDVPCE-DKFS 137
Query: 211 WICQ 214
++C+
Sbjct: 138 FVCK 141
>pdb|1GKN|A Chain A, Structure Determination And Rational Mutagenesis Reveal
Binding Surface Of Immune Adherence Receptor, Cr1 (Cd35)
Length = 128
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 417 GSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGGYV-VGYDLN 475
G+ +Y C +Y+ G C+ + WS C+ +C P P G V V D+
Sbjct: 29 GTSLKYECRPEYY---GRPFSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVITDIQ 85
Query: 476 VHSTLEFHCEPGHLLVGQASLKCTRQGD---WDNMSP 509
V S + + C GH L+G +S +C G+ W P
Sbjct: 86 VGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPP 122
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 9/124 (7%)
Query: 278 CGKLEHIEHGTVTLETTRTTH--GAVAIYACHENYTLIGETRRV-CGDGGKWNGTEPQCL 334
C +H + +TT + G Y C Y G + C D W+ + C
Sbjct: 6 CQAPDHFLFAKLKTQTTASDFPIGTSLKYECRPEY--YGRPFSITCLDNLVWSSPKDVCK 63
Query: 335 FDWCAEPPQISGGIV-TTSGRRTGSVATYSCEPGFILFGSNELKCGLGGD---WSGKAPT 390
C PP G+V + + GS TYSC G L G + +C L G+ WS K P
Sbjct: 64 RKSCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPI 123
Query: 391 CKYV 394
C+ +
Sbjct: 124 CQRI 127
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 206 LDYLHW-----ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRT 260
LD L W +C+ +C +P +N + ++GS I+Y+C G+ L+G ++
Sbjct: 50 LDNLVWSSPKDVCKRK--SCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAE 107
Query: 261 C----KEGFWTGVAPTCQYV 276
C W+ P CQ +
Sbjct: 108 CILSGNTAHWSTKPPICQRI 127
>pdb|2QZD|A Chain A, Fitted Structure Of Scr4 Of Daf Into Cryoem Density
Length = 65
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 337 WCAEPPQISGGIVTTSGRRTG--SVATYSCEPGFILFGSNELKCGLG---GDWSGKAPTC 391
+C PPQI GI+ G TY+C GF + G + + C + G+WSG P C
Sbjct: 3 YCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPEC 62
Query: 392 K 392
+
Sbjct: 63 R 63
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQ 332
+ C I++G + E + YAC++ +T+IGE C D G+W+G P+
Sbjct: 2 IYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPE 61
Query: 333 C 333
C
Sbjct: 62 C 62
>pdb|1SL6|A Chain A, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|B Chain B, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|C Chain C, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|D Chain D, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|E Chain E, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|F Chain F, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1XAR|A Chain A, Crystal Structure Of A Fragment Of Dc-Signr (Containing
The Carbohydrate Recognition Domain And Two Repeats Of
The Neck).
pdb|1XAR|B Chain B, Crystal Structure Of A Fragment Of Dc-Signr (Containing
The Carbohydrate Recognition Domain And Two Repeats Of
The Neck)
Length = 184
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 19/138 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
T F NCY F + ++ D+ + CQ LV FL + R
Sbjct: 58 TFFQGNCY-FMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSR-----SNRFS 111
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPS----WGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
W+G D TW+WVDG ++ PS W +PNN +G ++C G WND
Sbjct: 112 WMGL-SDLNQEG-TWQWVDGSPLS-PSFQRYWNSGEPNN-SGNEDCAEFSGSG---WNDN 164
Query: 203 GCKLDYLHWICQHNPANC 220
C +D +WIC+ PA C
Sbjct: 165 RCDVDN-YWICKK-PAAC 180
>pdb|1XPH|A Chain A, Structure Of Dc-Signr And A Portion Of Repeat Domain 8
Length = 150
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 85 EITSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
+ T F NCY F + ++ D+ + CQ LV FL + R
Sbjct: 22 DWTFFQGNCY-FMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSR-----SNR 75
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWND 201
W+G D TW+WVDG ++ + W +PNN +G ++C G WND
Sbjct: 76 FSWMGL-SDLNQEG-TWQWVDGSPLSPSFQRYWNSGEPNN-SGNEDCAEFSGSG---WND 129
Query: 202 VGCKLDYLHWICQHNPANC 220
C +D +WIC+ PA C
Sbjct: 130 NRCDVDN-YWICKK-PAAC 146
>pdb|1K9J|A Chain A, Complex Of Dc-signr And Glcnac2man3
pdb|1K9J|B Chain B, Complex Of Dc-signr And Glcnac2man3
Length = 139
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 19/140 (13%)
Query: 85 EITSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
+ T F NCY F + ++ D+ + CQ LV FL + R
Sbjct: 11 DWTFFQGNCY-FMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSR-----SNR 64
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPS----WGKDQPNNYNGEQNCVVLDGGRGWLWN 200
W+G D TW+WVDG ++ PS W +PNN +G ++C G WN
Sbjct: 65 FSWMGL-SDLNQEG-TWQWVDGSPLS-PSFQRYWNSGEPNN-SGNEDCAEFSGSG---WN 117
Query: 201 DVGCKLDYLHWICQHNPANC 220
D C +D +WIC+ PA C
Sbjct: 118 DNRCDVDN-YWICKK-PAAC 135
>pdb|2H2R|A Chain A, Crystal Structure Of The Human Cd23 Lectin Domain, Apo
Form
pdb|2H2R|B Chain B, Crystal Structure Of The Human Cd23 Lectin Domain, Apo
Form
pdb|2H2T|B Chain B, Cd23 Lectin Domain, Calcium 2+-Bound
Length = 175
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 53/138 (38%), Gaps = 17/138 (12%)
Query: 88 SFDRNCYEFNIDKGA-SFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
+F R CY F KG + AR C G LV FL R
Sbjct: 23 NFQRKCYYFG--KGTKQWVHARYACDDMEGQLVSIHSPEEQDFLT-------KRASHTGS 73
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDG-GRGWLWNDVGCK 205
WIG + + WVDG V +W +P + + ++CV++ G GR WND C
Sbjct: 74 WIGLRN--LDLKGEFIWVDGSHVDYSNWAPGEPTSRSQSEDCVMMRGSGR---WNDAFCD 128
Query: 206 LDYLHWICQHNPANCGSP 223
W+C A C P
Sbjct: 129 RKLGAWVCDRL-ATCTPP 145
>pdb|1RTM|1 Chain 1, Trimeric Structure Of A C-Type Mannose-Binding Protein
pdb|1RTM|2 Chain 2, Trimeric Structure Of A C-Type Mannose-Binding Protein
pdb|1RTM|3 Chain 3, Trimeric Structure Of A C-Type Mannose-Binding Protein
pdb|1KWT|A Chain A, Rat Mannose Binding Protein A (Native, Mpd)
pdb|1KWT|B Chain B, Rat Mannose Binding Protein A (Native, Mpd)
pdb|1KWT|C Chain C, Rat Mannose Binding Protein A (Native, Mpd)
pdb|1KWU|A Chain A, Rat Mannose Binding Protein A Complexed With A-Me-Man
pdb|1KWU|B Chain B, Rat Mannose Binding Protein A Complexed With A-Me-Man
pdb|1KWU|C Chain C, Rat Mannose Binding Protein A Complexed With A-Me-Man
pdb|1KWV|A Chain A, Rat Mannose Binding Protein A Complexed With A-Me-Glcnac
pdb|1KWV|B Chain B, Rat Mannose Binding Protein A Complexed With A-Me-Glcnac
pdb|1KWV|C Chain C, Rat Mannose Binding Protein A Complexed With A-Me-Glcnac
pdb|1KWW|A Chain A, Rat Mannose Protein A Complexed With A-Me-Fuc.
pdb|1KWW|B Chain B, Rat Mannose Protein A Complexed With A-Me-Fuc.
pdb|1KWW|C Chain C, Rat Mannose Protein A Complexed With A-Me-Fuc.
pdb|1KWX|A Chain A, Rat Mannose Protein A Complexed With B-Me-Fuc.
pdb|1KWX|B Chain B, Rat Mannose Protein A Complexed With B-Me-Fuc.
pdb|1KWX|C Chain C, Rat Mannose Protein A Complexed With B-Me-Fuc.
pdb|1KWY|A Chain A, Rat Mannose Protein A Complexed With Man-A13-Man.
pdb|1KWY|B Chain B, Rat Mannose Protein A Complexed With Man-A13-Man.
pdb|1KWY|C Chain C, Rat Mannose Protein A Complexed With Man-A13-Man.
pdb|1KX1|A Chain A, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|B Chain B, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|C Chain C, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|D Chain D, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|E Chain E, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|F Chain F, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
Length = 149
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 156 ITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGCKLDY 208
+T + +V G +T +W KD+PN++ ++CV ++D G LWND+ C+ +
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTIVDNG---LWNDISCQASH 141
>pdb|1BUU|A Chain A, One Ho3+ Form Of Rat Mannose-Binding Protein A
Length = 168
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 156 ITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGCKLDY 208
+T + +V G +T +W KD+PN++ ++CV ++D G LWND+ C+ +
Sbjct: 110 VTEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTIVDNG---LWNDISCQASH 160
>pdb|1MSB|A Chain A, Structure Of The Calcium-dependent Lectin Domain From A
Rat Mannose-binding Protein Determined By Mad Phasing
pdb|1MSB|B Chain B, Structure Of The Calcium-dependent Lectin Domain From A
Rat Mannose-binding Protein Determined By Mad Phasing
pdb|2MSB|A Chain A, Structure Of A C-type Mannose-binding Protein Complexed
With An Oligosaccharide
pdb|2MSB|B Chain B, Structure Of A C-type Mannose-binding Protein Complexed
With An Oligosaccharide
pdb|1YTT|A Chain A, Yb Substituted Subtilisin Fragment Of Mannose Binding
Protein-a (sub-mbp-a), Mad Structure At 110k
pdb|1YTT|B Chain B, Yb Substituted Subtilisin Fragment Of Mannose Binding
Protein-a (sub-mbp-a), Mad Structure At 110k
Length = 115
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 156 ITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGCKLDY 208
+T + +V G +T +W KD+PN++ ++CV ++D G LWND+ C+ +
Sbjct: 57 VTEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTIVDNG---LWNDISCQASH 107
>pdb|2KMB|1 Chain 1, Complex Of 3'-Neuac-Lewis-X With A Selectin-Like Mutant Of
Mannose- Binding Protein A
pdb|2KMB|2 Chain 2, Complex Of 3'-Neuac-Lewis-X With A Selectin-Like Mutant Of
Mannose- Binding Protein A
pdb|2KMB|3 Chain 3, Complex Of 3'-Neuac-Lewis-X With A Selectin-Like Mutant Of
Mannose- Binding Protein A
pdb|3KMB|1 Chain 1, Complex Of 3'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose- Binding Protein A
pdb|3KMB|2 Chain 2, Complex Of 3'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose- Binding Protein A
pdb|3KMB|3 Chain 3, Complex Of 3'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose- Binding Protein A
pdb|4KMB|1 Chain 1, Complex Of 4'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|4KMB|2 Chain 2, Complex Of 4'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|4KMB|3 Chain 3, Complex Of 4'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|1KMB|1 Chain 1, Selectin-Like Mutant Of Mannose-Binding Protein A
pdb|1KMB|2 Chain 2, Selectin-Like Mutant Of Mannose-Binding Protein A
pdb|1KMB|3 Chain 3, Selectin-Like Mutant Of Mannose-Binding Protein A
Length = 149
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 156 ITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGCK 205
+T + +V G +T +W KD+PN++ ++CV ++D G LWND+ C+
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTIVDNG---LWNDISCQ 138
>pdb|2YRA|A Chain A, Solution Structure Of The Zinc Finger Domains (1-87) From
Human F-Box Only Protein
Length = 74
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 342 PQISGGIVTTSGRR--TGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVDCGSP 399
P+I G TTS G+ TY C+PG+ + GS+ L C WS P C+ + P
Sbjct: 12 PEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCEKTEESGP 71
Query: 400 AN 401
++
Sbjct: 72 SS 73
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 20/53 (37%)
Query: 281 LEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQC 333
L I++G T T GA Y C Y ++G C W+ P C
Sbjct: 11 LPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFC 63
>pdb|1KX0|A Chain A, Rat Mannose Protein A (H189v I207v) Complexed With
Man-A13-Man
pdb|1KX0|B Chain B, Rat Mannose Protein A (H189v I207v) Complexed With
Man-A13-Man
pdb|1KX0|C Chain C, Rat Mannose Protein A (H189v I207v) Complexed With
Man-A13-Man
Length = 149
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 156 ITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGCKLDY 208
+T + +V G +T +W KD+PN+ ++CV ++D G LWNDV C+ +
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDEPNDVGSGEDCVTIVDNG---LWNDVSCQASH 141
>pdb|1JZN|A Chain A, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1JZN|B Chain B, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1JZN|C Chain C, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1JZN|D Chain D, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1JZN|E Chain E, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1MUQ|A Chain A, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
pdb|1MUQ|B Chain B, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
pdb|1MUQ|C Chain C, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
pdb|1MUQ|D Chain D, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
pdb|1MUQ|E Chain E, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
Length = 135
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 146 VWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGW-LWNDVGC 204
VWIG + +W+W D +W K+QP++Y ++ CV L G+ LWND C
Sbjct: 66 VWIGLRDKK--KDFSWEWTDRSCTDYLTWDKNQPDHYQNKEFCVELVSLTGYRLWNDQVC 123
Query: 205 K 205
+
Sbjct: 124 E 124
>pdb|1KWZ|A Chain A, Rat Mannose Protein A (H189v) Complexed With Man-A13-Man
pdb|1KWZ|B Chain B, Rat Mannose Protein A (H189v) Complexed With Man-A13-Man
pdb|1KWZ|C Chain C, Rat Mannose Protein A (H189v) Complexed With Man-A13-Man
Length = 149
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 156 ITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGCKLDY 208
+T + +V G +T +W KD+PN+ ++CV ++D G LWND+ C+ +
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDEPNDVGSGEDCVTIVDNG---LWNDISCQASH 141
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDD-YWLEAGAMRRQVCMRDGKWSGDTPS 452
+DCG P +I+NG +T GSV YTC++ Y++E G C +G W +
Sbjct: 2 LDCGIPESIENGKVEDPE-STLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVNEVLG 60
Query: 453 CELITC 458
EL C
Sbjct: 61 PELPKC 66
>pdb|1PPQ|A Chain A, Nmr Structure Of 16th Module Of Immune Adherence Receptor,
Cr1 (Cd35)
Length = 68
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 338 CAEPPQISGGIV-TTSGRRTGSVATYSCEPGFILFGSNELKCGLGGD---WSGKAPTCKY 393
C PP G+V + + GS TYSC G L G + +C L G+ WS K P C+
Sbjct: 7 CKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQR 66
Query: 394 V 394
+
Sbjct: 67 I 67
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 219 NCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQ 274
+C +P +N + ++GS I+Y+C G+ L+G ++ C W+ P CQ
Sbjct: 6 SCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQ 65
Query: 275 YV 276
+
Sbjct: 66 RI 67
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 454 ELITCPEPEVPKGGYV-VGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGD---WDNMSP 509
E +C P P G V V D+ V S + + C GH L+G +S +C G+ W P
Sbjct: 3 EAKSCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPP 62
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 394 VDCGSPANIDNGHYSLLNG--TTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTP 451
VDCG P ++ +G + G TT+ +V +Y+C++ ++ + VC DG W+
Sbjct: 6 VDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKG 65
Query: 452 SCELITCPEP 461
L C EP
Sbjct: 66 EKSLPVC-EP 74
>pdb|1T8C|A Chain A, Structure Of The C-Type Lectin Domain Of Cd23
pdb|1T8D|A Chain A, Structure Of The C-Type Lectin Domain Of Cd23
pdb|4EZM|G Chain G, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|H Chain H, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|I Chain I, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|J Chain J, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|K Chain K, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|L Chain L, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
Length = 143
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 52/138 (37%), Gaps = 17/138 (12%)
Query: 88 SFDRNCYEFNIDKGA-SFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
+F R CY F KG + AR C G LV FL
Sbjct: 14 NFQRKCYYFG--KGTKQWVHARYACDDMEGQLVSIHSPEEQDFLTKHASHTGS------- 64
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDG-GRGWLWNDVGCK 205
WIG + + WVDG V +W +P + + ++CV++ G GR WND C
Sbjct: 65 WIGLRNLD--LKGEFIWVDGSHVDYSNWAPGEPTSRSQGEDCVMMRGSGR---WNDAFCD 119
Query: 206 LDYLHWICQHNPANCGSP 223
W+C A C P
Sbjct: 120 RKLGAWVCD-RLATCTPP 136
>pdb|1FVU|A Chain A, Crystal Structure Of Botrocetin
pdb|1FVU|C Chain C, Crystal Structure Of Botrocetin
pdb|1IJK|B Chain B, The Von Willebrand Factor Mutant (I546v) A1 Domain-
Botrocetin Complex
pdb|1U0N|B Chain B, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
pdb|1U0O|A Chain A, The Mouse Von Willebrand Factor A1-Botrocetin Complex
Length = 133
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 18/140 (12%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
+S++ NCY+F + ++ADA C QA GG LV +G+L + + L
Sbjct: 7 SSYEGNCYKF-FQQKMNWADAERFCSEQAKGGHLVSIKIYSKEKDFVGDLVTKNIQSSDL 65
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGW-LWNDVG 203
WIG + + + +W DG V+ + + + C L+ G+ LW ++
Sbjct: 66 YAWIGLRVENKEKQCSSEWSDGSSVSYENVVE------RTVKKCFALEKDLGFVLWINLY 119
Query: 204 CKLDYLHWICQHNPANCGSP 223
C Q NP C SP
Sbjct: 120 C--------AQKNPFVCKSP 131
>pdb|3TVJ|A Chain A, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 86
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 394 VDCGSPANIDNGHYSLLNG--TTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDT- 450
VDCG P ++ +G + G TT+ +V +Y+C++ ++ + VC DG W+
Sbjct: 6 VDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCDADGFWTSSKG 65
Query: 451 ----PSCELI 456
P CE +
Sbjct: 66 EKSLPVCEPV 75
>pdb|1DV8|A Chain A, Crystal Structure Of The Carbohydrate Recognition Domain
Of The H1 Subunit Of The Asialoglycoprotein Receptor
Length = 128
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 24/133 (18%)
Query: 90 DRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIG 149
+R+CY F+ G ++ADA + C+ LV F+ + + + W+G
Sbjct: 9 ERSCYWFSR-SGKAWADADNYCRLEDAHLVVVTSWEEQKFV-------QHHIGPVNTWMG 60
Query: 150 AQKDPGITARTWKWVDGEVVTK--PSWGKDQPNNYNGE-----QNCVVL-DGGRGWLWND 201
G WKWVDG +W +QP+++ G ++C D GR WND
Sbjct: 61 LHDQNG----PWKWVDGTDYETGFKNWRPEQPDDWYGHGLGGGEDCAHFTDDGR---WND 113
Query: 202 VGCKLDYLHWICQ 214
C+ Y W+C+
Sbjct: 114 DVCQRPY-RWVCE 125
>pdb|2OX9|A Chain A, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|B Chain B, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|C Chain C, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|D Chain D, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain
Length = 140
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 23/125 (18%)
Query: 88 SFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTL--- 144
+F CY F+++K F DA+ C+ LV F+ E++ + T+
Sbjct: 11 NFTDKCYYFSLEKEI-FEDAKLFCEDKSSHLV---------FINSREEQQWIKKHTVGRE 60
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYN-----GEQNCVVLDGGRGWLW 199
WIG WKW+DG V +W QP+N+ GE ++ G+ W
Sbjct: 61 SHWIGLTDSE--QESEWKWLDGSPVDYKNWKAGQPDNWGSGHGPGEDCAGLIYAGQ---W 115
Query: 200 NDVGC 204
ND C
Sbjct: 116 NDFQC 120
>pdb|1HFI|A Chain A, Solution Structure Of A Pair Of Complement Modules By
Nuclear Magnetic Resonance
Length = 62
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 338 CAEPPQISGGIVTTSGRRTGSVA-----TYSCEPGFILFGSNELKCGLGGDWSGKAPTCK 392
C++PPQI G + +S S A +Y+CE GF + NE C + G WS P C+
Sbjct: 5 CSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCYM-GKWSS-PPQCE 62
>pdb|1IOD|A Chain A, Crystal Structure Of The Complex Between The Coagulation
Factor X Binding Protein From Snake Venom And The Gla
Domain Of Factor X
Length = 129
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
+S++ +CY+ + ++ADA S C Q +GG LV +G+L +K + +
Sbjct: 7 SSYEGHCYKV-FKQSKTWADAESFCTKQVNGGHLV-SIESSGEADFVGQLIAQKIKSAKI 64
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNN 181
VWIG + + +W DG ++ +W +++
Sbjct: 65 HVWIGLRAQNKEKQCSIEWSDGSSISYENWIEEESKK 101
>pdb|1BCH|1 Chain 1, Mannose-Binding Protein-A Mutant (Qpdwgh) Complexed With
N- Acetyl-D-Galactosamine
pdb|1BCH|2 Chain 2, Mannose-Binding Protein-A Mutant (Qpdwgh) Complexed With
N- Acetyl-D-Galactosamine
pdb|1BCH|3 Chain 3, Mannose-Binding Protein-A Mutant (Qpdwgh) Complexed With
N- Acetyl-D-Galactosamine
Length = 154
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 156 ITARTWKWVDGEVVTKPSWGKDQPNNYNGE-----QNCV-VLDGGRGWLWNDVGCKLDY 208
+T + +V G +T +W KDQP+++ G ++CV ++D G LWND+ C+ +
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDQPDDWYGHGLGGGEDCVHIVDNG---LWNDISCQASH 146
>pdb|2OX8|A Chain A, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|B Chain B, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|C Chain C, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|D Chain D, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain
Length = 140
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 18/134 (13%)
Query: 88 SFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVW 147
+F CY F+++K F DA+ C+ LV ++ ++ R+ W
Sbjct: 11 NFTDKCYYFSVEKEI-FEDAKLFCEDKSSHLVFINTREEQQWIKKQMVGRESH------W 63
Query: 148 IGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYN-----GEQNCVVLDGGRGWLWNDV 202
IG WKW+DG +W QP+N+ GE ++ G+ WND
Sbjct: 64 IGLTDSE--RENEWKWLDGTSPDYKNWKAGQPDNWGHGHGPGEDCAGLIYAGQ---WNDF 118
Query: 203 GCKLDYLHWICQHN 216
C+ D ++IC+ +
Sbjct: 119 QCE-DVNNFICEKD 131
>pdb|1BCJ|1 Chain 1, Mannose-Binding Protein-A Mutant (Qpdwghv) Complexed With
N- Acetyl-D-Galactosamine
pdb|1BCJ|2 Chain 2, Mannose-Binding Protein-A Mutant (Qpdwghv) Complexed With
N- Acetyl-D-Galactosamine
pdb|1BCJ|3 Chain 3, Mannose-Binding Protein-A Mutant (Qpdwghv) Complexed With
N- Acetyl-D-Galactosamine
Length = 154
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 156 ITARTWKWVDGEVVTKPSWGKDQPNNYNGE-----QNCV-VLDGGRGWLWNDVGCKLDY 208
+T + +V G +T +W KDQP+++ G ++CV ++D G LWND+ C+ +
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDQPDDWYGHGLGGGEDCVHIVDNG---LWNDISCQASH 146
>pdb|1AFA|1 Chain 1, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFA|2 Chain 2, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFA|3 Chain 3, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFB|1 Chain 1, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFB|2 Chain 2, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFB|3 Chain 3, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFD|1 Chain 1, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFD|2 Chain 2, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFD|3 Chain 3, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
Length = 154
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 156 ITARTWKWVDGEVVTKPSWGKDQPNNYNGE-----QNCV-VLDGGRGWLWNDVGCKLDY 208
+T + +V G +T +W KDQP+++ G ++CV ++D G LWND+ C+ +
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDQPDDWYGHGLGGGEDCVTIVDNG---LWNDISCQASH 146
>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
Length = 164
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 21/115 (18%)
Query: 99 DKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQKDPGITA 158
+K ++ AR C+ + DLV I N + LE+ ++ WIG +K GI
Sbjct: 7 EKPMNWQRARRFCRDNYTDLV----AIQNKAEIEYLEKTLPFSRSYY-WIGIRKIGGI-- 59
Query: 159 RTWKWV-DGEVVTKPS--WGKDQPNNYNGEQNCVVL------DGGRGWLWNDVGC 204
W WV + +T+ + WG +PNN +++CV + D G+ WND C
Sbjct: 60 --WTWVGTNKSLTEEAENWGDGEPNNKKNKEDCVEIYIKRNKDAGK---WNDDAC 109
>pdb|1TDQ|B Chain B, Structural Basis For The Interactions Between Tenascins
And The C-Type Lectin Domains From Lecticans: Evidence
For A Cross-Linking Role For Tenascins
Length = 130
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 12/129 (9%)
Query: 77 ASEKAASAEITSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELER 136
A ++ T F +CY D+ ++ DA +C+ L ++ + E +
Sbjct: 2 ADQEQCEEGWTKFQGHCYRHFPDR-ETWVDAERRCREQQSHL--------SSIVTPEEQE 52
Query: 137 RKDRLKTLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGE-QNCVVLDGGR 195
++ WIG D I ++W DG + W +QP+N+ ++CVV+
Sbjct: 53 FVNKNAQDYQWIGL-NDRTIEG-DFRWSDGHSLQFEKWRPNQPDNFFATGEDCVVMIWHE 110
Query: 196 GWLWNDVGC 204
WNDV C
Sbjct: 111 RGEWNDVPC 119
>pdb|2KV3|A Chain A, Human Regenerating Gene Type Iv (Reg Iv) Protein, P91s
Mutant
Length = 131
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 92 NCYEFNIDKGASFADARSKCQASG-GDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGA 150
NCY + K +++DA +CQ+ G G + + + E R ++ +WIG
Sbjct: 13 NCYGY-FRKLRNWSDAELECQSYGNGAHLASILSLKEASTIAEYISGYQRSQS--IWIGL 69
Query: 151 QKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WNDVGCKLDYL 209
DP + W+W+DG + SW + G ++C + +L W+ C
Sbjct: 70 H-DPQ-KRQQWQWIDGAMYLYRSWSG---KSMGGNKHCAEMSSNNNFLTWSSNECN-KRQ 123
Query: 210 HWICQHNP 217
H++C++ P
Sbjct: 124 HFLCKYRP 131
>pdb|1FIF|A Chain A, N-Acetylgalactosamine-Selective Mutant Of Mannose-Binding
Protein-A (Qpdwg-Hdrpy)
pdb|1FIF|B Chain B, N-Acetylgalactosamine-Selective Mutant Of Mannose-Binding
Protein-A (Qpdwg-Hdrpy)
pdb|1FIF|C Chain C, N-Acetylgalactosamine-Selective Mutant Of Mannose-Binding
Protein-A (Qpdwg-Hdrpy)
pdb|1FIH|A Chain A, N-Acetylgalactosamine Binding Mutant Of Mannose-Binding
Protein A (Qpdwg-Hdrpy), Complex With
N-Acetylgalactosamine
pdb|1FIH|B Chain B, N-Acetylgalactosamine Binding Mutant Of Mannose-Binding
Protein A (Qpdwg-Hdrpy), Complex With
N-Acetylgalactosamine
pdb|1FIH|C Chain C, N-Acetylgalactosamine Binding Mutant Of Mannose-Binding
Protein A (Qpdwg-Hdrpy), Complex With
N-Acetylgalactosamine
Length = 154
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 156 ITARTWKWVDGEVVTKPSWGKDQPNNYNGE-----QNCV-VLDGGRGWLWNDVGCKLDY 208
+T + +V G +T +W KDQP+++ G ++CV ++D G LWND C+ Y
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDQPDDWYGHGLGGGEDCVHIVDNG---LWNDDSCQRPY 146
>pdb|1WT9|A Chain A, Crystal Structure Of Aa-X-Bp-I, A Snake Venom Protein With
The Activity Of Binding To Coagulation Factor X From
Agkistrodon Acutus
Length = 129
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
+S++ +CY+ + ++ DA S C Q +GG LV +G+L +K + +
Sbjct: 7 SSYEGHCYKV-FKQSKTWTDAESFCTKQVNGGHLV-SIESSGEADFVGQLIAQKIKSAKI 64
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNN 181
VWIG + + +W DG ++ +W +++
Sbjct: 65 HVWIGLRAQNKEKQCSIEWSDGSSISYENWIEEESKK 101
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 347 GIVTTSGRRTGSVATYSCEPGFILFGSNE 375
GI+T +TG++ ++CE G I+ GSN+
Sbjct: 213 GIITLQAMKTGALLRFACEAGAIIAGSNQ 241
>pdb|1H8U|A Chain A, Crystal Structure Of The Eosinophil Major Basic Protein At
1.8a: An Atypical Lectin With A Paradigm Shift In
Specificity
pdb|1H8U|B Chain B, Crystal Structure Of The Eosinophil Major Basic Protein At
1.8a: An Atypical Lectin With A Paradigm Shift In
Specificity
pdb|2BRS|A Chain A, Embp Heparin Complex
pdb|2BRS|B Chain B, Embp Heparin Complex
Length = 117
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 146 VWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCK 205
VWIG + R ++WVDG W QP + G +CV L RG W C
Sbjct: 52 VWIGGRITGSGRCRRFQWVDGSRWNFAYWAAHQPWSRGG--HCVAL-CTRGGYWRRAHC- 107
Query: 206 LDYLHWICQH 215
L L +IC +
Sbjct: 108 LRRLPFICSY 117
>pdb|1HCC|A Chain A, Three-Dimensional Structure Of A Complement Control
Protein Module In Solution
Length = 59
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 338 CAEPPQISGGIVT--TSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTC 391
C PP+IS G+V + + G TY C GF + G KC LG WS P+C
Sbjct: 5 CKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKC-LGEKWS-HPPSC 58
>pdb|1Y17|A Chain A, Crystal Structure Of Aa-X-Bp-Ii, A Snake Venom Protein
With The Activity Of Binding To Coagulation Factor X
From Agkistrodon Acutus
Length = 129
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 83 SAEITSFDRNCYEFNIDKGASFADARSKC--QASGGDLVHGFRGITNTFLLGELERRKDR 140
S+ +S++ +CY+ + ++ADA S C Q +GG LV + L +K +
Sbjct: 3 SSSWSSYEGHCYK-AFKQSKTWADAESFCTKQVNGGHLV-SIESSGEADFVAHLIAQKIK 60
Query: 141 LKTLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNN 181
+ VWIG + + +W DG ++ +W +++
Sbjct: 61 SAKIHVWIGLRAQNKEKQCSIEWSDGSSISYENWIEEESKK 101
>pdb|3H3X|Q Chain Q, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
pdb|3H3X|R Chain R, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
pdb|3H3X|S Chain S, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
Length = 549
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 53 GVEGSLSLCEVEIFTTDEFSTDR-CASEKAASAEITSFDRNCYEFNIDKGASFADARSKC 111
G+ G+ + F TD+ S ++ A+ + S IT D + N+D GA + D +
Sbjct: 282 GIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVD-NVDLGAIYEDVKYSW 340
Query: 112 QASGGDLVHGFRGITN 127
A GGD H + G+T+
Sbjct: 341 YAPGGDGKHPYDGVTD 356
>pdb|3CUS|Q Chain Q, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
pdb|3CUS|R Chain R, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
pdb|3CUS|S Chain S, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
Length = 549
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 53 GVEGSLSLCEVEIFTTDEFSTDR-CASEKAASAEITSFDRNCYEFNIDKGASFADARSKC 111
G+ G+ + F TD+ S ++ A+ + S IT D + N+D GA + D +
Sbjct: 282 GIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVD-NVDLGAIYEDVKYSW 340
Query: 112 QASGGDLVHGFRGITN 127
A GGD H + G+T+
Sbjct: 341 YAPGGDGKHPYDGVTD 356
>pdb|3CUR|H Chain H, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
pdb|3CUR|I Chain I, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
pdb|3CUR|J Chain J, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
Length = 549
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 53 GVEGSLSLCEVEIFTTDEFSTDR-CASEKAASAEITSFDRNCYEFNIDKGASFADARSKC 111
G+ G+ + F TD+ S ++ A+ + S IT D + N+D GA + D +
Sbjct: 282 GIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVD-NVDLGAIYEDVKYSW 340
Query: 112 QASGGDLVHGFRGITN 127
A GGD H + G+T+
Sbjct: 341 YAPGGDGKHPYDGVTD 356
>pdb|1HTN|A Chain A, Human Tetranectin, A Trimeric Plasminogen Binding Protein
With An Alpha-Helical Coiled Coil
Length = 182
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 103 SFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQKDPGITARTWK 162
+F +A C + GG L G N L L R+ +W+G A
Sbjct: 70 TFHEASEDCISRGGTLSTPQTGSENDALYEYL--RQSVGNEAEIWLGLND----MAAEGT 123
Query: 163 WVD--GEVVTKPSWGKD---QPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 214
WVD G + +W + QP+ E NC VL G W D C+ D L +ICQ
Sbjct: 124 WVDMTGARIAYKNWETEITAQPDGGKTE-NCAVLSGAANGKWFDKRCR-DQLPYICQ 178
>pdb|3G84|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of R343v Mutant Of Human Surfactant
Protein D In Complex With Alpha 1,2 Dimannose.
pdb|3G84|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of R343v Mutant Of Human Surfactant
Protein D In Complex With Alpha 1,2 Dimannose.
pdb|3G84|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of R343v Mutant Of Human Surfactant
Protein D In Complex With Alpha 1,2 Dimannose
Length = 160
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 166 GEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGC 204
GE + +W +PN+ G ++CV + G+ WNDV C
Sbjct: 114 GESLVYSNWAPGEPNDDGGSEDCVEIFTNGK---WNDVAC 150
>pdb|1FRF|L Chain L, Crystal Structure Of The Ni-Fe Hydrogenase From
Desulfovibrio Fructosovorans
Length = 564
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 53 GVEGSLSLCEVEIFTTDEFSTDR-CASEKAASAEITSFDRNCYEFNIDKGASFADARSKC 111
G+ G+ + F TD+ S ++ A+ + S IT D + N+D GA + D +
Sbjct: 282 GIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVD-NVDLGAIYEDVKYSW 340
Query: 112 QASGGDLVHGFRGITN 127
A GGD H + G+T+
Sbjct: 341 YAPGGDGKHPYDGVTD 356
>pdb|1HUP|A Chain A, Human Mannose Binding Protein Carbohydrate Recognition
Domain Trimerizes Through A Triple Alpha-Helical
Coiled-Coil
Length = 141
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 162 KWVD--GEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 214
++VD G +T +W + +PNN +++CV+L + WNDV C +L +C+
Sbjct: 87 QFVDLTGNRLTYTNWNEGEPNNAGSDEDCVLL--LKNGQWNDVPCSTSHLA-VCE 138
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 395 DCGSPANIDNG--HYSLLNGTTTHGSVAEYTCDDDYW-LEAGAMRRQ------VCMRDGK 445
DCG P N+ NG Y+ G T+ + +Y C + Y+ ++ A R+ C G
Sbjct: 1 DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGI 60
Query: 446 WSGD-----TPSCELITCPEPEVP 464
W + P C L C +P P
Sbjct: 61 WKNEQKGEKIPRC-LPVCGKPVNP 83
>pdb|2QZF|A Chain A, Scr1 Of Daf From 1ojv Fitted Into Cryoem Density
Length = 62
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 395 DCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWS 447
DCG P ++ N +L T+ +V Y C++ + G +C++ +WS
Sbjct: 3 DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWS 56
>pdb|1BV4|A Chain A, Apo-Mannose-Binding Protein-C
pdb|1BV4|B Chain B, Apo-Mannose-Binding Protein-C
pdb|1BV4|C Chain C, Apo-Mannose-Binding Protein-C
pdb|1BV4|D Chain D, Apo-Mannose-Binding Protein-C
Length = 118
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 157 TARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVV-LDGGRGWLWNDVGCKLDYL 209
T ++ + G V +W + +PNN +NCVV L G+ WNDV C +L
Sbjct: 61 TENVFEDLTGNRVRYTNWNEGEPNNVGSGENCVVLLTNGK---WNDVPCSDSFL 111
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 395 DCGSPANIDNG--HYSLLNGTTTHGSVAEYTCDDDYW-LEAGAMRRQ------VCMRDGK 445
DCG P N+ NG Y+ G T+ + +Y C + Y+ ++ A R+ C G
Sbjct: 1 DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGI 60
Query: 446 WSGD-----TPSCELITCPEPEVP 464
W + P C L C +P P
Sbjct: 61 WKNEQKGEKIPRC-LPVCGKPVNP 83
>pdb|1KZA|1 Chain 1, Complex Of Mbp-C And Man-A13-Man
pdb|1KZA|2 Chain 2, Complex Of Mbp-C And Man-A13-Man
pdb|1KZB|1 Chain 1, Complex Of Mbp-C And Trimannosyl Core
pdb|1KZB|2 Chain 2, Complex Of Mbp-C And Trimannosyl Core
pdb|1KZC|1 Chain 1, Complex Of Mbp-c And High-affinity Linear Trimannose
pdb|1KZC|2 Chain 2, Complex Of Mbp-c And High-affinity Linear Trimannose
pdb|1KZD|1 Chain 1, Complex Of Mbp-C And Glcnac-Terminated Core
pdb|1KZD|2 Chain 2, Complex Of Mbp-C And Glcnac-Terminated Core
pdb|1KZE|1 Chain 1, Complex Of Mbp-C And Bivalent Man-Terminated Glycopeptide
pdb|1KZE|2 Chain 2, Complex Of Mbp-C And Bivalent Man-Terminated Glycopeptide
Length = 115
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 157 TARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVV-LDGGRGWLWNDVGCKLDYL 209
T ++ + G V +W + +PNN +NCVV L G+ WNDV C +L
Sbjct: 59 TENVFEDLTGNRVRYTNWNEGEPNNVGSGENCVVLLTNGK---WNDVPCSDSFL 109
>pdb|1RDI|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-L-Fucopyranoside
pdb|1RDI|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-L-Fucopyranoside
pdb|1RDJ|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Beta-Methyl-L-Fucopyranoside
pdb|1RDJ|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Beta-Methyl-L-Fucopyranoside
pdb|1RDK|1 Chain 1, Mannose-binding Protein, Subtilisin Digest Fragment
Complex With D-galactose
pdb|1RDK|2 Chain 2, Mannose-binding Protein, Subtilisin Digest Fragment
Complex With D-galactose
pdb|1RDL|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-D-Mannopyranoside (0.2 M)
pdb|1RDL|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-D-Mannopyranoside (0.2 M)
pdb|1RDM|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-D-Mannopyranoside (1.3 M)
pdb|1RDM|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-D-Mannopyranoside (1.3 M)
pdb|1RDN|1 Chain 1, Mannose-binding Protein, Subtilisin Digest Fragment
Complex With Alpha-methyl-d-n-acetylglucosaminide
pdb|1RDN|2 Chain 2, Mannose-binding Protein, Subtilisin Digest Fragment
Complex With Alpha-methyl-d-n-acetylglucosaminide
pdb|1RDO|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
pdb|1RDO|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Length = 113
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 157 TARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVV-LDGGRGWLWNDVGCKLDYL 209
T ++ + G V +W + +PNN +NCVV L G+ WNDV C +L
Sbjct: 56 TENVFEDLTGNRVRYTNWNEGEPNNVGSGENCVVLLTNGK---WNDVPCSDSFL 106
>pdb|1TN3|A Chain A, The C-Type Lectin Carbohydrate Recognition Domain Of Human
Tetranectin
Length = 137
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 103 SFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQKDPGITARTWK 162
+F +A C + GG L G N L L R+ +W+G A
Sbjct: 25 TFHEASEDCISRGGTLSTPQTGSENDALYEYL--RQSVGNEAEIWLGLND----MAAEGT 78
Query: 163 WVD--GEVVTKPSWGKD---QPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 214
WVD G + +W + QP+ E NC VL G W D C+ D L +ICQ
Sbjct: 79 WVDMTGARIAYKNWETEITAQPDGGKTE-NCAVLSGAANGKWFDKRCR-DQLPYICQ 133
>pdb|1RJH|A Chain A, Structure Of The Calcium Free Form Of The C-Type Lectin-
Like Domain Of Tetranectin
Length = 118
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 103 SFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQKDPGITARTWK 162
+F +A C + GG L G N L L R+ +W+G A
Sbjct: 6 TFHEASEDCISRGGTLSTPQTGSENDALYEYL--RQSVGNEAEIWLGLND----MAAEGT 59
Query: 163 WVD--GEVVTKPSWGKD---QPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 214
WVD G + +W + QP+ E NC VL G W D C+ D L +ICQ
Sbjct: 60 WVDMTGARIAYKNWETEITAQPDGGKTE-NCAVLSGAANGKWFDKRCR-DQLPYICQ 114
>pdb|2EHF|A Chain A, Solution Structure Of The Third Sushi Domain From Human
Cub And Sushi Domain-Containing Protein 1
Length = 73
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 24/63 (38%)
Query: 447 SGDTPSCELITCPEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDN 506
SG + E C +P +P G G TL F C LVG+ + C + W
Sbjct: 3 SGSSGEIEKGGCGDPGIPAYGKRTGSSFLHGDTLTFECPAAFELVGERVITCQQNNQWSG 62
Query: 507 MSP 509
P
Sbjct: 63 NKP 65
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 298 HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQC 333
HG + C + L+GE C +W+G +P C
Sbjct: 32 HGDTLTFECPAAFELVGERVITCQQNNQWSGNKPSC 67
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 353 GRRTGS------VATYSCEPGFILFGSNELKCGLGGDWSGKAPTC 391
G+RTGS T+ C F L G + C WSG P+C
Sbjct: 23 GKRTGSSFLHGDTLTFECPAAFELVGERVITCQQNNQWSGNKPSC 67
>pdb|1YQW|Q Chain Q, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
pdb|1YQW|R Chain R, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
pdb|1YQW|S Chain S, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
Length = 549
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 53 GVEGSLSLCEVEIFTTDEFSTDR-CASEKAASAEITSFDRNCYEFNIDKGASFADARSKC 111
G+ G+ + F TD+ S + A+ + S IT D + N+D GA + D +
Sbjct: 282 GIGGTSNYLAFGEFATDDSSPSKHLATSQFPSGVITGRDLGKVD-NVDLGAIYEDVKYSW 340
Query: 112 QASGGDLVHGFRGITN 127
A GGD H + G+T+
Sbjct: 341 YAPGGDGKHPYDGVTD 356
>pdb|1YRQ|H Chain H, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|I Chain I, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|J Chain J, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|K Chain K, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|M Chain M, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|N Chain N, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
Length = 549
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 53 GVEGSLSLCEVEIFTTDEFSTDR-CASEKAASAEITSFDRNCYEFNIDKGASFADARSKC 111
G+ G+ + F TD+ S + A+ + S IT D + N+D GA + D +
Sbjct: 282 GIGGTSNYLAFGEFATDDSSPSKHLATSQFPSGVITGRDLGKVD-NVDLGAIYEDVKYSW 340
Query: 112 QASGGDLVHGFRGITN 127
A GGD H + G+T+
Sbjct: 341 YAPGGDGKHPYDGVTD 356
>pdb|3KQG|A Chain A, Trimeric Structure Of Langerin
pdb|3KQG|B Chain B, Trimeric Structure Of Langerin
pdb|3KQG|C Chain C, Trimeric Structure Of Langerin
pdb|3KQG|D Chain D, Trimeric Structure Of Langerin
pdb|3KQG|E Chain E, Trimeric Structure Of Langerin
pdb|3KQG|F Chain F, Trimeric Structure Of Langerin
Length = 182
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 144 LLVWIGAQKDPGITARTWKWVD----GEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLW 199
L+ WIG K G+ W WVD +V + W +PNN ++C + W
Sbjct: 103 LIYWIGLTK-AGMEG-DWSWVDDTPFNKVQSARFWIPGEPNNAGNNEHCGNIKAPSLQAW 160
Query: 200 NDVGCKLDYLHWICQH 215
ND C +L +IC+
Sbjct: 161 NDAPCDKTFL-FICKR 175
>pdb|2KMS|A Chain A, Combined High- And Low-Resolution Techniques Reveal
Compact Structure In Central Portion Of Factor H Despite
Long Inter-Modular Linkers
Length = 115
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 278 CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCL 334
CG + +EHG L + +G + C E++T+IG R + G W PQC+
Sbjct: 2 CGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGH-RSITCIHGVWTQL-PQCV 56
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 240 GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYVD 277
G ++ + C E ++G + TC G WT + P C +D
Sbjct: 23 GDSVEFNCSESFTMIGHRSITCIHGVWTQL-PQCVAID 59
>pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1S|A Chain A, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
pdb|1G1S|B Chain B, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
Length = 162
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 16/120 (13%)
Query: 100 KGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQKDPGITAR 159
K S+ +R CQ DLV I N + L + + WIG +K+ +
Sbjct: 8 KAYSWNISRKYCQNRYTDLV----AIQNKNEIDYLNKVLPYYSSYY-WIGIRKN----NK 58
Query: 160 TWKWVDGEVV---TKPSWGKDQPNNYNGEQNCV---VLDGGRGWLWNDVGCKLDYLHWIC 213
TW WV + +W ++PNN ++CV + WND C L H +C
Sbjct: 59 TWTWVGTKKALTNEAENWADNEPNNKRNNEDCVEIYIKSPSAPGKWNDEHC-LKKKHALC 117
>pdb|1CKL|A Chain A, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|B Chain B, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|C Chain C, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|D Chain D, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|E Chain E, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|F Chain F, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|2O39|C Chain C, Human Adenovirus Type 11 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (membrane Cofactor Protein, Mcp)
pdb|2O39|D Chain D, Human Adenovirus Type 11 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (membrane Cofactor Protein, Mcp)
pdb|3INB|C Chain C, Structure Of The Measles Virus Hemagglutinin Bound To The
Cd46 Receptor
pdb|3INB|D Chain D, Structure Of The Measles Virus Hemagglutinin Bound To The
Cd46 Receptor
pdb|3L89|M Chain M, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|N Chain N, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|O Chain O, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|P Chain P, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|Q Chain Q, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|R Chain R, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|S Chain S, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|T Chain T, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|U Chain U, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|V Chain V, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|W Chain W, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|X Chain X, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
Length = 126
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 417 GSVAEYTCDDDYWLEAGAMRRQVCMRDGKW---SGDTPSCELITCPEPEVPKGGYVVGYD 473
G +Y C Y+ +C R+ W S D +C TCP P G V +
Sbjct: 23 GERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDD--ACYRETCPYIRDPLNGQAVPAN 80
Query: 474 --LNVHSTLEFHCEPGHLLVGQASLKCTRQGD---WDNMSP 509
+ F C G+ L+G+ L C +G W P
Sbjct: 81 GTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 121
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 344 ISGGIVTTSG-RRTGSVATYSCEPGFILFGSNELKCGLGGD---WSGKAPTCKYV 394
++G V +G G + C G+ L G L C L G WSGK P C+ V
Sbjct: 72 LNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV 126
>pdb|2AFP|A Chain A, The Solution Structure Of Type Ii Antifreeze Protein
Reveals A New Member Of The Lectin Family
Length = 129
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 103 SFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQKDPGITARTWK 162
++A A + C GG L ++F+ L +VWIG + A W
Sbjct: 27 TWALAETNCMKLGGHLASIHSQEEHSFI--------QTLNAGVVWIGGSA--CLQAGAWT 76
Query: 163 WVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDY 208
W DG + SW +P++ C+ + W+D+ C +
Sbjct: 77 WSDGTPMNFRSWCSTKPDDVLAA-CCMQMTAAADQCWDDLPCPASH 121
>pdb|3P5D|A Chain A, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man5 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6)(Man- Alpha1-3)man
pdb|3P5D|B Chain B, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man5 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6)(Man- Alpha1-3)man
pdb|3P5D|C Chain C, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man5 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6)(Man- Alpha1-3)man
pdb|3P5D|D Chain D, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man5 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6)(Man- Alpha1-3)man
pdb|3P5E|A Chain A, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man4 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6man)
pdb|3P5E|B Chain B, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man4 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6man)
pdb|3P5E|C Chain C, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man4 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6man)
pdb|3P5E|D Chain D, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man4 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6man)
pdb|3P5F|A Chain A, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man2 (Man Alpha1-2 Man)
pdb|3P5F|B Chain B, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man2 (Man Alpha1-2 Man)
pdb|3P5F|C Chain C, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man2 (Man Alpha1-2 Man)
pdb|3P5F|D Chain D, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man2 (Man Alpha1-2 Man)
pdb|3P5G|A Chain A, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Blood Group B Trisaccharide (Gal
Alpha1-3(Fuc Alpha1-2)gal)
pdb|3P5G|B Chain B, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Blood Group B Trisaccharide (Gal
Alpha1-3(Fuc Alpha1-2)gal)
pdb|3P5G|C Chain C, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Blood Group B Trisaccharide (Gal
Alpha1-3(Fuc Alpha1-2)gal)
pdb|3P5G|D Chain D, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Blood Group B Trisaccharide (Gal
Alpha1-3(Fuc Alpha1-2)gal)
pdb|3P5H|A Chain A, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Laminaritriose
pdb|3P5H|B Chain B, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Laminaritriose
pdb|3P5H|C Chain C, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Laminaritriose
pdb|3P5H|D Chain D, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Laminaritriose
pdb|3P5I|A Chain A, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With 6-So4-Gal-Glcnac
pdb|3P5I|B Chain B, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With 6-So4-Gal-Glcnac
pdb|3P5I|C Chain C, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With 6-So4-Gal-Glcnac
pdb|3P5I|D Chain D, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With 6-So4-Gal-Glcnac
Length = 136
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 144 LLVWIGAQKDPGITARTWKWVD----GEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLW 199
L+ WIG K G+ W WVD +V + W +PNN ++C + W
Sbjct: 57 LIYWIGLTKA-GMEG-DWSWVDDTPFNKVQSARFWIPGEPNNAGNNEHCGNIKAPSLQAW 114
Query: 200 NDVGCKLDYLHWICQH 215
ND C +L IC+
Sbjct: 115 NDAPCDKTFLF-ICKR 129
>pdb|3C22|A Chain A, Crystal Structure Of The Carbohydrate Recognition Domain
Of Human Langerin
pdb|3C22|B Chain B, Crystal Structure Of The Carbohydrate Recognition Domain
Of Human Langerin
pdb|3C22|C Chain C, Crystal Structure Of The Carbohydrate Recognition Domain
Of Human Langerin
pdb|3C22|D Chain D, Crystal Structure Of The Carbohydrate Recognition Domain
Of Human Langerin
Length = 156
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 144 LLVWIGAQKDPGITARTWKWVD----GEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLW 199
L+ WIG K G+ W WVD +V + W +PNN ++C + W
Sbjct: 77 LIYWIGLTKA-GMEG-DWSWVDDTPFNKVQSARFWIPGEPNNAGNNEHCGNIKAPSLQAW 134
Query: 200 NDVGCKLDYLHWICQH 215
ND C +L IC+
Sbjct: 135 NDAPCDKTFLF-ICKR 149
>pdb|1SRZ|A Chain A, Solution Structure Of The Second Complement Control
Protein (Ccp) Module Of The Gaba(B)r1a Receptor, Pro-119
Trans Conformer
pdb|1SS2|A Chain A, Solution Structure Of The Second Complement Control
Protein (Ccp) Module Of The Gaba(B)r1a Receptor, Pro-119
Cis Conformer
Length = 68
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 299 GAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQC 333
GA + C ++ L+G +R VC G+W+ +P C
Sbjct: 32 GARVEFRCDPDFHLVGSSRSVCSQ-GQWSTPKPHC 65
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 240 GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQ 274
G+ + + C LVGS+ C +G W+ P CQ
Sbjct: 32 GARVEFRCDPDFHLVGSSRSVCSQGQWSTPKPHCQ 66
>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3D64|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3GLQ|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
pdb|3GLQ|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
Length = 494
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 484 CEPGHLLVGQASLKCTRQGDWDNMSPQFISFYFPPSETISAVSEAQTL 531
C GH + + TRQ W+N+ PQ FP + + ++E + +
Sbjct: 361 CNIGHF-DSEIDVASTRQYQWENIKPQVDHIIFPDGKRVILLAEGRLV 407
>pdb|3P7F|A Chain A, Structure Of The Human Langerin Carbohydrate Recognition
Domain
pdb|3P7F|B Chain B, Structure Of The Human Langerin Carbohydrate Recognition
Domain
pdb|3P7F|C Chain C, Structure Of The Human Langerin Carbohydrate Recognition
Domain
pdb|3P7F|D Chain D, Structure Of The Human Langerin Carbohydrate Recognition
Domain
Length = 146
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 144 LLVWIGAQKDPGITARTWKWVD----GEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLW 199
L+ WIG K G+ W WVD +V + W +PNN ++C + W
Sbjct: 57 LIYWIGLTKA-GMEG-DWSWVDDTPFNKVQSVRFWIPGEPNNAGNNEHCGNIKAPSLQAW 114
Query: 200 NDVGCKLDYLHWICQH 215
ND C +L IC+
Sbjct: 115 NDAPCDKTFLF-ICKR 129
>pdb|2GGU|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Maltotriose
pdb|2GGU|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Maltotriose
pdb|2GGU|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Maltotriose
pdb|2GGX|A Chain A, Crystal Structure Of The Trimer Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With P-Nitrophenyl Maltoside
pdb|2GGX|B Chain B, Crystal Structure Of The Trimer Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With P-Nitrophenyl Maltoside
pdb|2GGX|C Chain C, Crystal Structure Of The Trimer Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With P-Nitrophenyl Maltoside
pdb|2ORJ|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With N-Acetyl Mannosamine
pdb|2ORJ|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With N-Acetyl Mannosamine
pdb|2ORJ|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With N-Acetyl Mannosamine
pdb|2ORK|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Inositol-1-phosphate
pdb|2ORK|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Inositol-1-phosphate
pdb|2ORK|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Inositol-1-phosphate
pdb|2OS9|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Myoinositol
pdb|2OS9|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Myoinositol
pdb|2OS9|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Myoinositol
pdb|2RIA|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With D-Glycero-D-Manno-Heptose
pdb|2RIA|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With D-Glycero-D-Manno-Heptose
pdb|2RIA|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With D-Glycero-D-Manno-Heptose
pdb|2RIB|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With L-Glycero-D-Manno-Heptose
pdb|2RIB|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With L-Glycero-D-Manno-Heptose
pdb|2RIB|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With L-Glycero-D-Manno-Heptose
pdb|2RIC|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With
L-Glycero-D-Manno-Heptopyranosyl-(1-3)-L-Glycero-D-
Manno-Heptopyranose
pdb|2RIC|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With
L-Glycero-D-Manno-Heptopyranosyl-(1-3)-L-Glycero-D-
Manno-Heptopyranose
pdb|2RIC|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With
L-Glycero-D-Manno-Heptopyranosyl-(1-3)-L-Glycero-D-
Manno-Heptopyranose
pdb|2RID|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Allyl 7-O-Carbamoyl-L-Glycero-D-Manno-
Heptopyranoside
pdb|2RID|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Allyl 7-O-Carbamoyl-L-Glycero-D-Manno-
Heptopyranoside
pdb|2RID|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Allyl 7-O-Carbamoyl-L-Glycero-D-Manno-
Heptopyranoside
pdb|2RIE|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With 2-deoxy-l-glycero-d-manno-heptose
pdb|2RIE|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With 2-deoxy-l-glycero-d-manno-heptose
pdb|2RIE|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With 2-deoxy-l-glycero-d-manno-heptose
pdb|3DBZ|A Chain A, Human Surfactant Protein D
pdb|3DBZ|B Chain B, Human Surfactant Protein D
pdb|3DBZ|C Chain C, Human Surfactant Protein D
pdb|3G81|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Alpha Methyl Mannoside
pdb|3G81|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Alpha Methyl Mannoside
pdb|3G81|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Alpha Methyl Mannoside
pdb|3G83|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Alpha 1,2 Dimannose.
pdb|3G83|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Alpha 1,2 Dimannose.
pdb|3G83|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Alpha 1,2 Dimannose
Length = 160
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 166 GEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGC 204
GE + +W +PN+ G ++CV + G+ WND C
Sbjct: 114 GESLVYSNWAPGEPNDDGGSEDCVEIFTNGK---WNDRAC 150
>pdb|3KCP|A Chain A, Crystal Structure Of Interacting Clostridium Thermocellum
Multimodular Components
pdb|4FL4|C Chain C, Scaffoldin Conformation And Dynamics Revealed By A Ternary
Complex From The Clostridium Thermocellum Cellulosome
pdb|4FL4|F Chain F, Scaffoldin Conformation And Dynamics Revealed By A Ternary
Complex From The Clostridium Thermocellum Cellulosome
pdb|4FL4|I Chain I, Scaffoldin Conformation And Dynamics Revealed By A Ternary
Complex From The Clostridium Thermocellum Cellulosome
pdb|4FL4|L Chain L, Scaffoldin Conformation And Dynamics Revealed By A Ternary
Complex From The Clostridium Thermocellum Cellulosome
Length = 321
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 453 CELITCPEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLV 491
L P+ + G +VV YD NV +E EPG L+V
Sbjct: 28 VNLYGVPQKGIASGDFVVSYDPNVLEIIE--IEPGELIV 64
>pdb|1IXX|A Chain A, Crystal Structure Of Coagulation Factors Ix/x-binding
Protein (ix/x- Bp) From Venom Of Habu Snake With A
Heterodimer Of C-type Lectin Domains
pdb|1IXX|C Chain C, Crystal Structure Of Coagulation Factors Ix/x-binding
Protein (ix/x- Bp) From Venom Of Habu Snake With A
Heterodimer Of C-type Lectin Domains
pdb|1IXX|E Chain E, Crystal Structure Of Coagulation Factors Ix/x-binding
Protein (ix/x- Bp) From Venom Of Habu Snake With A
Heterodimer Of C-type Lectin Domains
Length = 129
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
+S++ +CY+ +K ++ DA C QA G LV F+ + + RL
Sbjct: 7 SSYEGHCYK-AFEKYKTWEDAERVCTEQAKGAHLVSIESSGEADFVAQLVTQNMKRL-DF 64
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSW 174
+WIG + + +W DG V+ +W
Sbjct: 65 YIWIGLRVQGKVKQCNSEWSDGSSVSYENW 94
>pdb|3P7G|A Chain A, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Mannose
pdb|3P7G|B Chain B, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Mannose
pdb|3P7G|C Chain C, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Mannose
pdb|3P7G|D Chain D, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Mannose
pdb|3P7H|A Chain A, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Maltose
pdb|3P7H|B Chain B, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Maltose
pdb|3P7H|C Chain C, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Maltose
pdb|3P7H|D Chain D, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Maltose
Length = 146
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 144 LLVWIGAQKDPGITARTWKWVD----GEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLW 199
L+ WIG K W WVD +V + W +PNN ++C + W
Sbjct: 57 LIYWIGLTK--AGXEGDWSWVDDTPFNKVQSVRFWIPGEPNNAGNNEHCGNIKAPSLQAW 114
Query: 200 NDVGCKLDYLHWICQH 215
ND C +L IC+
Sbjct: 115 NDAPCDKTFLF-ICKR 129
>pdb|4DN8|A Chain A, Structure Of Porcine Surfactant Protein D Neck And
Carbohydrate Recognition Domain Complexed With Mannose
Length = 156
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 103 SFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQKDPGITARTWK 162
+F DA+ C +GG + R T L +L ++ K + + K G +
Sbjct: 51 TFQDAQQVCTQAGGQMASP-RSETENEALSQLVTAQN--KAAFLSMTDIKTEG----QFT 103
Query: 163 WVDGEVVTKPSWGKDQPNN---YNGEQNCV-VLDGGRGWLWNDVGC 204
+ GE + +W +PNN +G +NCV + G+ WND C
Sbjct: 104 YPTGEPLVYANWAPGEPNNNGGSSGAENCVEIFPNGK---WNDKAC 146
>pdb|1B08|A Chain A, Lung Surfactant Protein D (Sp-D) (Fragment)
pdb|1B08|B Chain B, Lung Surfactant Protein D (Sp-D) (Fragment)
pdb|1B08|C Chain C, Lung Surfactant Protein D (Sp-D) (Fragment)
Length = 158
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
Query: 104 FADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQKDPGITARTWKW 163
F +A+ C +GG L R L +L K+ L + T + +
Sbjct: 57 FTEAQLLCTQAGGQLASP-RSAAENAALQQLVVAKNEAAFLSM------TDSKTEGKFTY 109
Query: 164 VDGEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGC 204
GE + +W +PN+ G ++CV + G+ WND C
Sbjct: 110 PTGESLVYSNWAPGEPNDDGGSEDCVEIFTNGK---WNDRAC 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,911,581
Number of Sequences: 62578
Number of extensions: 885919
Number of successful extensions: 2378
Number of sequences better than 100.0: 148
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 1567
Number of HSP's gapped (non-prelim): 340
length of query: 618
length of database: 14,973,337
effective HSP length: 105
effective length of query: 513
effective length of database: 8,402,647
effective search space: 4310557911
effective search space used: 4310557911
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)