RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1807
(618 letters)
>1qub_A Protein (human BETA2-glycoprotein I); short consensus repeat,
sushi, complement control protein, N glycosylation,
multi-domain, membrane adhesion; HET: NAG MAN; 2.70A
{Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1
g.18.1.1 PDB: 1c1z_A* 1g4f_A 1g4g_A 2kri_A 3op8_A
Length = 319
Score = 224 bits (571), Expect = 3e-68
Identities = 67/306 (21%), Positives = 105/306 (34%), Gaps = 27/306 (8%)
Query: 220 CGSPDRHLNTTFVGTVNT-KLGSTISYACPEGNMLVGSATR-TCKE-GFWTGVAPTCQYV 276
C PD +T V + G I+Y+C G + G + C G W C
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKCTPR 63
Query: 277 DCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFD 336
C +E+G V T + ++C+ + L G C + GKW+ P C
Sbjct: 64 VCPFAGILENGAVRYTT--FEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPELPVCAPI 121
Query: 337 WCAEPPQISGGIVTTSGRRT------GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPT 390
C P + + A + C P +FG++ + C G+W+ P
Sbjct: 122 ICPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHAMFGNDTITCTTHGNWTK-LPE 180
Query: 391 CKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGD 449
C+ V C P+ DNG + T + A + C D Y L+ G C + G WS
Sbjct: 181 CREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLD-GPEEI-ECTKLGNWSA- 237
Query: 450 TPSCELITCPEPEVPKGGYVVGYDLNVH----------STLEFHCEPGHLLVGQASLKCT 499
PSC+ +C P G + + + F C+
Sbjct: 238 MPSCK-ASCKVPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCKNKEKKCSYTEDAQC 296
Query: 500 RQGDWD 505
G +
Sbjct: 297 IDGTIE 302
Score = 189 bits (481), Expect = 3e-55
Identities = 58/269 (21%), Positives = 86/269 (31%), Gaps = 26/269 (9%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVA 270
C P C N T + +TIS++C G L G+ + C E G W+
Sbjct: 59 KCT--PRVCPFAGILENGAVRYT-TFEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPEL 115
Query: 271 PTCQYVDCGKLEHIEHGTVTLETTRT----THGAVAIYACHENYTLIGETRRVCGDGGKW 326
P C + C T+ + + A++ C + + G C G W
Sbjct: 116 PVCAPIICPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHAMFGNDTITCTTHGNW 175
Query: 327 NGTEPQCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSNELKCGLGGD 383
P+C C P + G V + T AT+ C G+ L G E++C G+
Sbjct: 176 TKL-PECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGN 234
Query: 384 WSGKAPTCKYVDCGSPANIDNGHYS--------LLNGTTTHGSVAEYTCDDDYWLEAGAM 435
WS P+CK C P Y HG + C + +
Sbjct: 235 WSA-MPSCK-ASCKVPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCKNKEKKCSYTE 292
Query: 436 RRQVCMRDGKWSGDTPSCELITCPEPEVP 464
DG P C +V
Sbjct: 293 D--AQCIDGTIE--VPKCFKEHTDASDVK 317
Score = 151 bits (382), Expect = 3e-41
Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 13/178 (7%)
Query: 338 CAEPPQISGGIVTTSGR--RTGSVATYSCEPGFILFGS-NELKCGLGGDWSGKAPTCKYV 394
C +P + V G TYSC+PG++ G + C L G W C
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKCTPR 63
Query: 395 DCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCE 454
C ++NG T + + ++C+ ++L + C +GKWS + P C
Sbjct: 64 VCPFAGILENGAVR--YTTFEYPNTISFSCNTGFYLNGADSAK--CTEEGKWSPELPVCA 119
Query: 455 LITCPEPEVPKGGYVVGYDL------NVHSTLEFHCEPGHLLVGQASLKCTRQGDWDN 506
I CP P +P + Y T F C P H + G ++ CT G+W
Sbjct: 120 PIICPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHAMFGNDTITCTTHGNWTK 177
Score = 113 bits (285), Expect = 5e-28
Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 1/115 (0%)
Query: 396 CGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCEL 455
C P ++ L G Y+C Y G MR+ +C G W +T C
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVS-RGGMRKFICPLTGLWPINTLKCTP 62
Query: 456 ITCPEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQ 510
CP + + G V +T+ F C G L G S KCT +G W P
Sbjct: 63 RVCPFAGILENGAVRYTTFEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPELPV 117
Score = 42.6 bits (100), Expect = 2e-04
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 457 TCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLLVGQA-SLKCTRQGDWDNMSPQ 510
TCP+P+ VV + + C+PG++ G C G W + +
Sbjct: 3 TCPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLK 59
>1ntj_A Complement receptor related protein; immunology, glycoprotein, SCR,
CCP, immune system; NMR {Rattus norvegicus}
Length = 320
Score = 221 bits (564), Expect = 3e-67
Identities = 74/318 (23%), Positives = 120/318 (37%), Gaps = 31/318 (9%)
Query: 220 CGSPDRHLNTTFVGTVNT---KLGSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTCQY 275
C +P + + +G+++ Y C G + + TC+ WT C
Sbjct: 5 CPAPPLFPYAKPINPTDESTFPVGTSLKYECRPGY-IKRQFSITCEVNSVWTSPQDVCIR 63
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQ 332
C ++G V + T G+ Y C+E Y LIG + +C W+ P
Sbjct: 64 KQCETPLDPQNGIVHVNTD-IRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPI 122
Query: 333 CLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPG------FILFGSNELKC----G 379
C C PP I G + R G V TY C F L G + C G
Sbjct: 123 CESIPCEIPPSIPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPSIHCTSIDG 182
Query: 380 LGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQ 438
G WSG P C ++ +P +++N N + + + E+ C D + ++ +
Sbjct: 183 QVGVWSGPPPQCIELNKCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSV-- 240
Query: 439 VCMRDGKWSGDTPSCELITCPE---PEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQAS 495
C +W PSC + E+P G V +L + + + F C G+ L G +S
Sbjct: 241 YCRSLNRWEPQLPSCFKVKSCGAFLGELPNGHVFVPQNLQLGAKVTFVCNTGYQLKGNSS 300
Query: 496 LKCT---RQGDWDNMSPQ 510
C + W++ P
Sbjct: 301 SHCVLDGVESIWNSSVPV 318
Score = 180 bits (457), Expect = 9e-52
Identities = 58/253 (22%), Positives = 89/253 (35%), Gaps = 19/253 (7%)
Query: 276 VDCGKLEHIEHGTVTLETTRTT--HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQC 333
C + T +T G Y C Y + C W + C
Sbjct: 3 GQCPAPPLFPYAKPINPTDESTFPVGTSLKYECRPGYIK-RQFSITCEVNSVWTSPQDVC 61
Query: 334 LFDWCAEPPQISGGIVTTSGRRT-GSVATYSCEPGFILFGSNELKC---GLGGDWSGKAP 389
+ C P GIV + GS TY+C G+ L GS+ C W +AP
Sbjct: 62 IRKQCETPLDPQNGIVHVNTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAP 121
Query: 390 TCKYVDCGSPANIDNG-HYSLLNGTTTHGSVAEYTCDDDYWLEA-----GAMRRQ---VC 440
C+ + C P +I NG +S +G V Y C+ D + G +
Sbjct: 122 ICESIPCEIPPSIPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPSIHCTSID 181
Query: 441 MRDGKWSGDTPSCELITCPEPEVPKGGYVV---GYDLNVHSTLEFHCEPGHLLVGQASLK 497
+ G WSG P C + P + +V ++ +EF C+ G ++ G +S+
Sbjct: 182 GQVGVWSGPPPQCIELNKCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVY 241
Query: 498 CTRQGDWDNMSPQ 510
C W+ P
Sbjct: 242 CRSLNRWEPQLPS 254
Score = 177 bits (451), Expect = 5e-51
Identities = 59/264 (22%), Positives = 103/264 (39%), Gaps = 24/264 (9%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWT 267
+C C +P N + + GS+I+Y C EG L+GS++ C + W
Sbjct: 60 VCI--RKQCETPLDPQNGIVHVNTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWD 117
Query: 268 GVAPTCQYVDCGKLEHIEHGTVT-LETTRTTHGAVAIYACHEN------YTLIGETRRVC 320
AP C+ + C I +G +G V Y C+ + + L+GE C
Sbjct: 118 AEAPICESIPCEIPPSIPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPSIHC 177
Query: 321 ----GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGS 373
G G W+G PQC+ PP + ++ + + + + C+ GF++ G
Sbjct: 178 TSIDGQVGVWSGPPPQCIELNKCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGD 237
Query: 374 NELKCGLGGDWSGKAPTCKYVD--CGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLE 431
+ + C W + P+C V + NGH + G+ + C+ Y L+
Sbjct: 238 SSVYCRSLNRWEPQLPSCFKVKSCGAFLGELPNGHVFVPQN-LQLGAKVTFVCNTGYQLK 296
Query: 432 AGAMRR-QVCMRDGKWSGDTPSCE 454
+ + + W+ P CE
Sbjct: 297 GNSSSHCVLDGVESIWNSSVPVCE 320
Score = 39.2 bits (91), Expect = 0.003
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 455 LITCPEPEVPKGGYVVGY----DLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQ 510
L CP P + + V ++L++ C PG++ Q S+ C W +
Sbjct: 2 LGQCPAPPLFPYAKPINPTDESTFPVGTSLKYECRPGYIK-RQFSITCEVNSVWTSPQDV 60
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 227 bits (580), Expect = 5e-67
Identities = 78/334 (23%), Positives = 124/334 (37%), Gaps = 30/334 (8%)
Query: 219 NCGSPDRHLNTTFVGTVNT---KLGSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTCQ 274
+C +P + + + + +G+ + Y C G + + TCK+ WT C
Sbjct: 2 HCPAPSQLPSAKPINLTDESMFPIGTYLLYECLPG-YIKRQFSITCKQDSTWTSAEDKCI 60
Query: 275 YVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEP 331
C E+G V + T G+ Y C++ Y LIG + VC W+ P
Sbjct: 61 RKQCKTPSDPENGLVHV-HTGIEFGSRINYTCNQGYRLIGSSSAVCVITDQSVDWDTEAP 119
Query: 332 QCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPG------FILFGSNELKC---- 378
C + C PP I G +S R G V TY C F L G L C
Sbjct: 120 ICEWIPCEIPPGIPNGDFFSSTREDFHYGMVVTYRCNTDARGKALFNLVGEPSLYCTSND 179
Query: 379 GLGGDWSGKAPTCKYVD-CGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMR 436
G G WSG P C ++ C P ++N N + + + E+ C + ++ +
Sbjct: 180 GEIGVWSGPPPQCIELNKCTPPPYVENAVMLSENRSLFSLRDIVEFRCHPGFIMKGASSV 239
Query: 437 RQVCMRDGKWSGDTPSC-ELITCPEPEVPKGGYVVGYDLNVH---STLEFHCEPGHLLVG 492
C KW + PSC + + C P+ G + + CE G+ L G
Sbjct: 240 --HCQSLNKWEPELPSCFKGVICRLPQEMSGFQKGLGMKKEYYYGENVTLECEDGYTLEG 297
Query: 493 QASLKCTRQGDWDNMSPQFISFYFPPSETISAVS 526
+ +C G W+ + + +S P
Sbjct: 298 SSQSQCQSDGSWNPLLAKCVSRLADPEVPRDCGC 331
Score = 191 bits (485), Expect = 2e-53
Identities = 72/362 (19%), Positives = 124/362 (34%), Gaps = 42/362 (11%)
Query: 204 CKLDYLH----WICQHN-----------PANCGSPDRHLNTTFVGTVNTKLGSTISYACP 248
C Y+ C+ + C +P N + GS I+Y C
Sbjct: 33 CLPGYIKRQFSITCKQDSTWTSAEDKCIRKQCKTPSDPENGLVHVHTGIEFGSRINYTCN 92
Query: 249 EGNMLVGSATRTC----KEGFWTGVAPTCQYVDCGKLEHIEHGTVT-LETTRTTHGAVAI 303
+G L+GS++ C + W AP C+++ C I +G +G V
Sbjct: 93 QGYRLIGSSSAVCVITDQSVDWDTEAPICEWIPCEIPPGIPNGDFFSSTREDFHYGMVVT 152
Query: 304 YACHEN------YTLIGETRRVC----GDGGKWNGTEPQCL-FDWCAEPPQISGGIVTTS 352
Y C+ + + L+GE C G+ G W+G PQC+ + C PP + ++ +
Sbjct: 153 YRCNTDARGKALFNLVGEPSLYCTSNDGEIGVWSGPPPQCIELNKCTPPPYVENAVMLSE 212
Query: 353 GRRT---GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSL 409
R + + C PGFI+ G++ + C W + P+C +G
Sbjct: 213 NRSLFSLRDIVEFRCHPGFIMKGASSVHCQSLNKWEPELPSCFKGVICRLPQEMSGFQKG 272
Query: 410 LN--GTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGG 467
L +G C+D Y LE G+ + Q C DG W+ C G
Sbjct: 273 LGMKKEYYYGENVTLECEDGYTLE-GSSQSQ-CQSDGSWNPLLAKCVSRLADPEVPRDCG 330
Query: 468 YVVG----YDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQFISFYFPPSETIS 523
+++ + + + C + S++ E +
Sbjct: 331 CKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHT 390
Query: 524 AV 525
A
Sbjct: 391 AQ 392
Score = 152 bits (385), Expect = 8e-40
Identities = 63/347 (18%), Positives = 102/347 (29%), Gaps = 38/347 (10%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTV--NTKLGSTISYACPEGN------MLVGSATRTC-- 261
IC+ C P N F + + G ++Y C LVG + C
Sbjct: 120 ICE--WIPCEIPPGIPNGDFFSSTREDFHYGMVVTYRCNTDARGKALFNLVGEPSLYCTS 177
Query: 262 ---KEGFWTGVAPTCQYVD-CGKLEHIEHGTVTLETTRT-THGAVAIYACHENYTLIGET 316
+ G W+G P C ++ C ++E+ + E + + + CH + + G +
Sbjct: 178 NDGEIGVWSGPPPQCIELNKCTPPPYVENAVMLSENRSLFSLRDIVEFRCHPGFIMKGAS 237
Query: 317 RRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT----GSVATYSCEPGFILFG 372
C KW P C PQ G G + G T CE G+ L G
Sbjct: 238 SVHCQSLNKWEPELPSCFKGVICRLPQEMSGFQKGLGMKKEYYYGENVTLECEDGYTLEG 297
Query: 373 SNELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEA 432
S++ +C G W+ C D G + SV + L
Sbjct: 298 SSQSQCQSDGSWNPLLAKCVSRLADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTI 357
Query: 433 GAMRRQVCMRDGKWSGDT----------PSCELITCPEPEVPKGG-YVVGYDLNV----- 476
+ C+ D E + +L +
Sbjct: 358 TLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDW 417
Query: 477 HSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQFISFYFPPSETIS 523
+ EF C K + +PQ + PP E ++
Sbjct: 418 LNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQ-LYTIPPPKEQMA 463
Score = 142 bits (360), Expect = 2e-36
Identities = 45/193 (23%), Positives = 64/193 (33%), Gaps = 20/193 (10%)
Query: 336 DWCAEPPQISGGIVT----TSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTC 391
D C P Q+ S G+ Y C PG+I + C W+ C
Sbjct: 1 DHCPAPSQLPSAKPINLTDESMFPIGTYLLYECLPGYIK-RQFSITCKQDSTWTSAEDKC 59
Query: 392 KYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRR-QVCMRDGKWSGDT 450
C +P++ +NG ++ GS YTC+ Y L + + + W +
Sbjct: 60 IRKQCKTPSDPENGLVH-VHTGIEFGSRINYTCNQGYRLIGSSSAVCVITDQSVDWDTEA 118
Query: 451 PSCELITCPEPEVPKGGYVVGYDLNVH---STLEFHCEPGHL------LVGQASLKCT-- 499
P CE I C P G + + C LVG+ SL CT
Sbjct: 119 PICEWIPCEIPPGIPNGDFFSSTREDFHYGMVVTYRCNTDARGKALFNLVGEPSLYCTSN 178
Query: 500 --RQGDWDNMSPQ 510
G W PQ
Sbjct: 179 DGEIGVWSGPPPQ 191
>2c8i_E CD55, complement decay-accelerating factor; picornavirus, DAF,
virus-receptor complex, antigen, blood group antigen,
complement pathway, GPI-anchor; 14.00A {Homo sapiens}
SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1
Length = 316
Score = 215 bits (550), Expect = 3e-65
Identities = 72/314 (22%), Positives = 118/314 (37%), Gaps = 24/314 (7%)
Query: 219 NCGSPDRHLNTTFVGT--VNTKLGSTISYACPEGNMLVGS--ATRTC-KEGFWTGVAPTC 273
+CG P N + + I+Y C E + + + C K W+ + C
Sbjct: 2 DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFC 61
Query: 274 QYV-DCGKLEHIEHGTVTLETTRT-THGAVAIYACHENYTLIG--ETRRVCGDGGKWNGT 329
DCG + + LE + V Y C E++ I + +C G +W+
Sbjct: 62 NRSQDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDI 121
Query: 330 EPQCLFDWCAEPPQISGGIV-----TTSGRRTGSVATYSCEPGFILFGS--NELKCGLGG 382
E C C P +++ + T + G+V Y C PG+ S +L C
Sbjct: 122 EEFCNRS-CEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNL 180
Query: 383 DWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRR-QVCM 441
WS CK C +P I NG + G G+ ++C+ Y L +
Sbjct: 181 KWSTAVEFCKKKSCPNPGEIRNGQIDVPGGIL-FGATISFSCNTGYKLFGSTSSFCLISG 239
Query: 442 RDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVH--STLEFHCEPGHLLVGQASLKCT 499
+WS P C I CP P G + G + ++ + C G ++G+ S+ CT
Sbjct: 240 SSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCT 299
Query: 500 ---RQGDWDNMSPQ 510
+G+W P+
Sbjct: 300 VNNDEGEWSGPPPE 313
Score = 180 bits (459), Expect = 4e-52
Identities = 56/252 (22%), Positives = 84/252 (33%), Gaps = 14/252 (5%)
Query: 217 PANCGSPDRHLNTTFVGTVNT--KLGSTISYACPEGNMLVGS--ATRTCKE-GFWTGVAP 271
+CG P N T + I+Y C E + + + C + W+ +
Sbjct: 64 SQDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEE 123
Query: 272 TCQYVDC--GKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIG--ETRRVCGDGGKWN 327
C +L + G V Y C Y + C KW+
Sbjct: 124 FCNRSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWS 183
Query: 328 GTEPQCLFDWCAEPPQISGGIVTTSGRRT-GSVATYSCEPGFILFGSNELKC---GLGGD 383
C C P +I G + G G+ ++SC G+ LFGS C G
Sbjct: 184 TAVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQ 243
Query: 384 WSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRR-QVCMR 442
WS P C+ + C +P IDNG + Y C+ + + V
Sbjct: 244 WSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNND 303
Query: 443 DGKWSGDTPSCE 454
+G+WSG P C
Sbjct: 304 EGEWSGPPPECR 315
Score = 108 bits (270), Expect = 4e-26
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWT 267
C+ +C +P N G+TIS++C G L GS + C W+
Sbjct: 188 FCK--KKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWS 245
Query: 268 GVAPTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGG 324
P C+ + C I++G + E + YAC++ +T+IGE C D G
Sbjct: 246 DPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEG 305
Query: 325 KWNGTEPQC 333
+W+G P+C
Sbjct: 306 EWSGPPPEC 314
>1rid_A Complement control protein; regulation, SCR, immune system; HET:
IDS SGN; 2.10A {Vaccinia virus} SCOP: g.18.1.1 g.18.1.1
g.18.1.1 g.18.1.1 PDB: 1g44_A 1g40_A* 1y8e_A* 1e5g_A
1vvc_A 1vvd_A 1vve_A
Length = 244
Score = 210 bits (535), Expect = 5e-64
Identities = 66/244 (27%), Positives = 97/244 (39%), Gaps = 10/244 (4%)
Query: 273 CQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQ 332
C ++ T G Y C Y G Q
Sbjct: 2 CTIPSRPINMKFKNSVETDANANYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTGWTLFNQ 61
Query: 333 CLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGD----WSGKA 388
C+ C P I G + G GS TYSC G+ L G ++ C LG W+ +A
Sbjct: 62 CIKRRCPSPRDIDNGQLDIGGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEA 121
Query: 389 PTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSG 448
P C+ V C SP +I NG ++ T GSV Y+C+ Y L G C G+WS
Sbjct: 122 PICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLI-GNSGVL-C-SGGEWSD 178
Query: 449 DTPSCELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDN 506
P+C+++ CP P + G G+ + + ++F C+ G+ L G +S C+ W
Sbjct: 179 -PPTCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWKP 237
Query: 507 MSPQ 510
P+
Sbjct: 238 ELPK 241
Score = 187 bits (475), Expect = 3e-55
Identities = 69/248 (27%), Positives = 96/248 (38%), Gaps = 19/248 (7%)
Query: 220 CGSPDRHLNTTFVGTVNT------KLGSTISYACPEGNMLVGSATRTCKE-GFWTGVAPT 272
C P R +N F +V T +G TI Y C G K G +
Sbjct: 2 CTIPSRPINMKFKNSVETDANANYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTGWTLFNQ 61
Query: 273 CQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGG----KWNG 328
C C I++G + + G+ Y+C+ Y LIGE++ C G WN
Sbjct: 62 CIKRRCPSPRDIDNGQLDIGG--VDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNP 119
Query: 329 TEPQCLFDWCAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSNELKCGLGGDWSG 386
P C C PP IS G GSV TYSC G+ L G++ + C GG+WS
Sbjct: 120 EAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCS-GGEWSD 178
Query: 387 KAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKW 446
PTC+ V C P + S + ++ ++ C Y L G+ C W
Sbjct: 179 -PPTCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLS-GSSSST-CSPGNTW 235
Query: 447 SGDTPSCE 454
+ P C
Sbjct: 236 KPELPKCV 243
Score = 153 bits (387), Expect = 1e-42
Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 10/182 (5%)
Query: 217 PANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCK-----EGFWTGVAP 271
C SP N GS+I+Y+C G L+G + C+ W AP
Sbjct: 64 KRRCPSPRDIDNGQLDIG-GVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEAP 122
Query: 272 TCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEP 331
C+ V C I +G T G+V Y+C+ Y+LIG + +C G+W+ P
Sbjct: 123 ICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCSG-GEWSDP-P 180
Query: 332 QCLFDWCAEPPQISGGIVTTSGR--RTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAP 389
C C P +G + + R + C+ G+ L GS+ C G W + P
Sbjct: 181 TCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWKPELP 240
Query: 390 TC 391
C
Sbjct: 241 KC 242
Score = 102 bits (256), Expect = 7e-25
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 4/124 (3%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNT-KLGSTISYACPEGNMLVGSATRTCKEGFWTGVA 270
IC+ C SP N G + GS ++Y+C G L+G++ C G W+
Sbjct: 123 ICE--SVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSD-P 179
Query: 271 PTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTE 330
PTCQ V C + ++ + C Y L G + C G W
Sbjct: 180 PTCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWKPEL 239
Query: 331 PQCL 334
P+C+
Sbjct: 240 PKCV 243
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response,
innate immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 219 bits (558), Expect = 6e-61
Identities = 84/313 (26%), Positives = 125/313 (39%), Gaps = 25/313 (7%)
Query: 220 CGSPDRHLNTTFVGTVNT---KLGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYV 276
C +P+ + +G+ ++Y C G + K WTG C+
Sbjct: 2 CNAPEWLPFARPTNLTDEFEFPIGTYLNYECRPGYSGRPFSIICLKNSVWTGAKDRCRRK 61
Query: 277 DCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQC 333
C +G V + G+ Y+C + Y LIG + C GD W+ P C
Sbjct: 62 SCRNPPDPVNGMVHV-IKGIQFGSQIKYSCTKGYRLIGSSSATCIISGDTVIWDNETPIC 120
Query: 334 LFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPG------FILFGSNELKC----GL 380
C PP I+ G ++ R GSV TY C PG F L G + C
Sbjct: 121 DRIPCGLPPTITNGDFISTNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSIYCTSNDDQ 180
Query: 381 GGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQV 439
G WSG AP C + +P N++NG N + + V E+ C + ++
Sbjct: 181 VGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRV--K 238
Query: 440 CMRDGKWSGDTPSCELITCPEPEVPKGGYVV--GYDLNVHSTLEFHCEPGHLLVGQASLK 497
C KW + PSC + P P+V + + + + CEPG+ L G AS++
Sbjct: 239 CQALNKWEPELPSCSRVCQPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLRGAASMR 298
Query: 498 CTRQGDWDNMSPQ 510
CT QGDW +P
Sbjct: 299 CTPQGDWSPAAPT 311
Score = 202 bits (514), Expect = 4e-55
Identities = 77/321 (23%), Positives = 134/321 (41%), Gaps = 24/321 (7%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWT 267
+C +P +N + ++GS I+Y+C G+ L+G ++ C W+
Sbjct: 505 KDVCKRKSCKTPPDPVNGMVHVITDIQVGSRINYSCTTGHRLIGHSSAECILSGNAAHWS 564
Query: 268 GVAPTCQYVDCGKLEHIEHGTVTLETTRT-THGAVAIYACHE------NYTLIGETRRVC 320
P CQ + CG I +G +G+V Y C+ + L+GE C
Sbjct: 565 TKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSIYC 624
Query: 321 ----GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGS 373
G W+G PQC+ PP + GI+ + R V + C+PGF++ G
Sbjct: 625 TSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGP 684
Query: 374 NELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEA 432
+KC W + P+C V C P ++ + + + + G Y+C+ Y L
Sbjct: 685 RRVKCQALNKWEPELPSCSRV-CQPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLR- 742
Query: 433 GAMRRQVCMRDGKWSGDTPSCELITCPE--PEVPKGGYVVGYDLNVHSTLEFHCEPGHLL 490
GA + C G WS P+CE+ +C + ++ G + +L + + ++F C+ G L
Sbjct: 743 GAASMR-CTPQGDWSPAAPTCEVKSCDDFMGQLLNGRVLFPVNLQLGAKVDFVCDEGFQL 801
Query: 491 VGQASLKCTRQGDWDNMSPQF 511
G ++ C G +
Sbjct: 802 KGSSASYCVLAGMESLWNSSV 822
Score = 198 bits (503), Expect = 9e-54
Identities = 76/318 (23%), Positives = 125/318 (39%), Gaps = 22/318 (6%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKE----GFWT 267
+C +P +N + ++GS I+Y+C G+ L+G ++ C W+
Sbjct: 955 KDVCKRKSCKTPPDPVNGMVHVITDIQVGSRINYSCTTGHRLIGHSSAECILSGNTAHWS 1014
Query: 268 GVAPTCQYVDCGKLEHIEHGTVTL-ETTRTTHGAVAIYACHE------NYTLIGETRRVC 320
P CQ + CG I +G +G+V Y C+ + L+GE C
Sbjct: 1015 TKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYC 1074
Query: 321 ----GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGS 373
G W+G PQC+ PP + GI+ + R V + C+PGF++ G
Sbjct: 1075 TSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGP 1134
Query: 374 NELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAG 433
+KC W + P+C V P + H + G Y+C+ Y L
Sbjct: 1135 RRVKCQALNKWEPELPSCSRVCQPPPEILHGEHTPSHQDNFSPGQEVFYSCEPGYDLRGA 1194
Query: 434 AMRRQVCMRDGKWSGDTPSCELITC--PEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLV 491
A C G WS + P C + +C ++P G + +L + + + F C+ G L
Sbjct: 1195 ASLH--CTPQGDWSPEAPRCAVKSCDDFLGQLPHGRVLFPLNLQLGAKVSFVCDEGFRLK 1252
Query: 492 GQASLKCTRQGDWDNMSP 509
G + C G +
Sbjct: 1253 GSSVSHCVLVGMRSLWNN 1270
Score = 198 bits (503), Expect = 1e-53
Identities = 80/342 (23%), Positives = 131/342 (38%), Gaps = 25/342 (7%)
Query: 188 CVVLDGGRGWLWNDVGCKLDYLHWICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYAC 247
C G G + + + T + +G++++Y C
Sbjct: 1329 CTSDPHGNGVWSSPAPRCE---LSVRAGHCKTPEQFPFASPTIPINDFEFPVGTSLNYEC 1385
Query: 248 PEGNMLVGSATRTCKEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACH 307
G + + W+ V C+ CG +G V + T T G+ Y+C+
Sbjct: 1386 RPGYFGKMFSISCLENLVWSSVEDNCRRKSCGPPPEPFNGMVHINTD-TQFGSTVNYSCN 1444
Query: 308 ENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT---GSVAT 361
E + LIG C G+ W+ P C C PP IS G ++ R + G+V T
Sbjct: 1445 EGFRLIGSPSTTCLVSGNNVTWDKKAPICEIISCEPPPTISNGDFYSNNRTSFHNGTVVT 1504
Query: 362 YSCEPG------FILFGSNELKC----GLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLN 411
Y C G F L G + C G WS P C + + ++N N
Sbjct: 1505 YQCHTGPDGEQLFELVGERSIYCTSKDDQVGVWSSPPPRCISTNKCTAPEVENAIRVPGN 1564
Query: 412 GTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGGYVV 470
+ + + + C + + G+ Q C +G+W P C + P PE+ G + +
Sbjct: 1565 RSFFSLTEIIRFRCQPGFVMV-GSHTVQ-CQTNGRWGPKLPHCSRVCQPPPEILHGEHTL 1622
Query: 471 GY--DLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQ 510
+ + + + + CEP + L G ASL CT QGDW +P+
Sbjct: 1623 SHQDNFSPGQEVFYSCEPSYDLRGAASLHCTPQGDWSPEAPR 1664
Score = 197 bits (502), Expect = 1e-53
Identities = 77/313 (24%), Positives = 123/313 (39%), Gaps = 22/313 (7%)
Query: 217 PANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPT 272
+C +P +N + GS I Y+C +G L+GS++ TC W P
Sbjct: 60 RKSCRNPPDPVNGMVHVIKGIQFGSQIKYSCTKGYRLIGSSSATCIISGDTVIWDNETPI 119
Query: 273 CQYVDCGKLEHIEHGTVT-LETTRTTHGAVAIYACHEN------YTLIGETRRVC----G 321
C + CG I +G +G+V Y C+ + L+GE C
Sbjct: 120 CDRIPCGLPPTITNGDFISTNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSIYCTSNDD 179
Query: 322 DGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSNELKC 378
G W+G PQC+ PP + GI+ + R V + C+PGF++ G +KC
Sbjct: 180 QVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKC 239
Query: 379 GLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQ 438
W + P+C V P + + G Y+C+ Y L A R
Sbjct: 240 QALNKWEPELPSCSRVCQPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLRGAASMR- 298
Query: 439 VCMRDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVH--STLEFHCEPGHLLVGQASL 496
C G WS P+CE+ +C + V + +N+ + ++F C+ G L G ++
Sbjct: 299 -CTPQGDWSPAAPTCEVKSCDDFMGQLLNGRVLFPVNLQLGAKVDFVCDEGFQLKGSSAS 357
Query: 497 KCTRQGDWDNMSP 509
C G +
Sbjct: 358 YCVLAGMESLWNS 370
Score = 197 bits (501), Expect = 2e-53
Identities = 75/321 (23%), Positives = 116/321 (36%), Gaps = 26/321 (8%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGT--VNTKLGSTISYACPEGN------MLVGSATRTC-- 261
CG P N F+ T N GS ++Y C G+ LVG + C
Sbjct: 1017 PPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTS 1076
Query: 262 ---KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRT-THGAVAIYACHENYTLIGETR 317
+ G W+G AP C + ++E+G + + + V + C + + G R
Sbjct: 1077 NDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRR 1136
Query: 318 RVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSNE 375
C KW P C P + G + G YSCEPG+ L G+
Sbjct: 1137 VKCQALNKWEPELPSCSRVCQPPPEILHGEHTPSHQDNFSPGQEVFYSCEPGYDLRGAAS 1196
Query: 376 LKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAM 435
L C GDWS +AP C C L G+ + CD+ + L+ ++
Sbjct: 1197 LHCTPQGDWSPEAPRCAVKSCDDFLGQLPHGRVLFPLNLQLGAKVSFVCDEGFRLKGSSV 1256
Query: 436 RR-QVCMRDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVH---STLEFHCEP----- 486
+ W+ P CE I CP P G G + + C+P
Sbjct: 1257 SHCVLVGMRSLWNNSVPVCEHIFCPNPPAILNGRHTGTPSGDIPYGKEISYTCDPHPDRG 1316
Query: 487 -GHLLVGQASLKCTRQGDWDN 506
L+G+++++CT +
Sbjct: 1317 MTFNLIGESTIRCTSDPHGNG 1337
Score = 196 bits (499), Expect = 3e-53
Identities = 82/349 (23%), Positives = 130/349 (37%), Gaps = 35/349 (10%)
Query: 183 NGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHNPANCGSPDRHLNTTFVGTV--NTKLG 240
G + + G +W++ IC CG P N F+ T N G
Sbjct: 97 IGSSSATCIISGDTVIWDNETP-------ICD--RIPCGLPPTITNGDFISTNRENFHYG 147
Query: 241 STISYACPEGN------MLVGSATRTC-----KEGFWTGVAPTCQYVDCGKLEHIEHGTV 289
S ++Y C G+ LVG + C + G W+G AP C + ++E+G +
Sbjct: 148 SVVTYRCNPGSGGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGIL 207
Query: 290 TLETTRT-THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGI 348
+ + V + C + + G R C KW P C P +
Sbjct: 208 VSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPELPSCSRVCQPPPDVLHAER 267
Query: 349 VTTSGRRT--GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVDCGSPANIDNGH 406
G YSCEPG+ L G+ ++C GDWS APTC+ C
Sbjct: 268 TQRDKDNFSPGQEVFYSCEPGYDLRGAASMRCTPQGDWSPAAPTCEVKSCDDFMGQLLNG 327
Query: 407 YSLLNGTTTHGSVAEYTCDDDYWLEAGAMRR-QVCMRDGKWSGDTPSCELITCPEPEVPK 465
L G+ ++ CD+ + L+ + + + W+ P CE I CP P V
Sbjct: 328 RVLFPVNLQLGAKVDFVCDEGFQLKGSSASYCVLAGMESLWNSSVPVCEQIFCPSPPVIP 387
Query: 466 GGYVVGYDLNVH---STLEFHCEP------GHLLVGQASLKCTRQGDWD 505
G G L V + + C+P L+G+++++CT +
Sbjct: 388 NGRHTGKPLEVFPFGKAVNYTCDPHPDRGTSFDLIGESTIRCTSDPQGN 436
Score = 193 bits (491), Expect = 3e-52
Identities = 75/318 (23%), Positives = 119/318 (37%), Gaps = 24/318 (7%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGN------MLVGSATRTC---- 261
ICQ P + + N GS ++Y C G+ LVG + C
Sbjct: 569 ICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSIYCTSND 628
Query: 262 -KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRT-THGAVAIYACHENYTLIGETRRV 319
+ G W+G AP C + ++E+G + + + V + C + + G R
Sbjct: 629 DQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVK 688
Query: 320 CGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSNELK 377
C KW P C P + G YSCEPG+ L G+ ++
Sbjct: 689 CQALNKWEPELPSCSRVCQPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLRGAASMR 748
Query: 378 CGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRR 437
C GDWS APTC+ C L G+ ++ CD+ + L+ +
Sbjct: 749 CTPQGDWSPAAPTCEVKSCDDFMGQLLNGRVLFPVNLQLGAKVDFVCDEGFQLKGSSASY 808
Query: 438 -QVCMRDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVH---STLEFHCEP------G 487
+ + W+ P CE I CP P V G G L V + + C+P
Sbjct: 809 CVLAGMESLWNSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFPFGKAVNYTCDPHPDRGTS 868
Query: 488 HLLVGQASLKCTRQGDWD 505
L+G+++++CT +
Sbjct: 869 FDLIGESTIRCTSDPQGN 886
Score = 191 bits (487), Expect = 9e-52
Identities = 82/314 (26%), Positives = 126/314 (40%), Gaps = 24/314 (7%)
Query: 220 CGSPDRHLNTTFVGTVNT-KLGSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTCQYVD 277
C +P+ G + L I + C G ++VGS T C+ G W P C V
Sbjct: 1550 CTAPEVENAIRVPGNRSFFSLTEIIRFRCQPGFVMVGSHTVQCQTNGRWGPKLPHCSRVC 1609
Query: 278 CGKLEHIEHGTVTL-ETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFD 336
E I HG TL + G Y+C +Y L G C G W+ P+C
Sbjct: 1610 QPPPE-ILHGEHTLSHQDNFSPGQEVFYSCEPSYDLRGAASLHCTPQGDWSPEAPRCTVK 1668
Query: 337 WCAEPPQI--SGGIVTTSGRRTGSVATYSCEPGFILFGSNELKC---GLGGDWSGKAPTC 391
C + G ++ + G+ ++ C+ GF L G + C G+ W+ P C
Sbjct: 1669 SCDDFLGQLPHGRVLLPLNLQLGAKVSFVCDEGFRLKGRSASHCVLAGMKALWNSSVPVC 1728
Query: 392 KYVDCGSPANIDNGHYSLLN-GTTTHGSVAEYTCDDDYWLEAG--------AMRRQVCMR 442
+ + C +P I NG ++ G +G Y CD
Sbjct: 1729 EQIFCPNPPAILNGRHTGTPFGDIPYGKEISYACDTHPDRGMTFNLIGESSIRCTSDPQG 1788
Query: 443 DGKWSGDTPSCEL---ITCPEPEVPKGGYVVGYDLNVH---STLEFHCEPGHLLVGQASL 496
+G WS P CEL CP P + G+ +G ++++ T+ + C+PG+LLVG+ +
Sbjct: 1789 NGVWSSPAPRCELSVPAACPHPPKIQNGHYIGGHVSLYLPGMTISYICDPGYLLVGKGFI 1848
Query: 497 KCTRQGDWDNMSPQ 510
CT QG W +
Sbjct: 1849 FCTDQGIWSQLDHY 1862
Score = 191 bits (486), Expect = 1e-51
Identities = 76/298 (25%), Positives = 102/298 (34%), Gaps = 26/298 (8%)
Query: 236 NTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTCQYVDCGKLEHIEHGTVTLETT 294
N G + Y+C L G+A+ C G W+ AP C C L
Sbjct: 1627 NFSPGQEVFYSCEPSYDLRGAASLHCTPQGDWSPEAPRCTVKSCDDFLGQLPHGRVLLPL 1686
Query: 295 RTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTT 351
GA + C E + L G + C G WN + P C +C PP I G T
Sbjct: 1687 NLQLGAKVSFVCDEGFRLKGRSASHCVLAGMKALWNSSVPVCEQIFCPNPPAILNGRHTG 1746
Query: 352 SGRRT---GSVATYSCEP------GFILFGSNELKCGLG----GDWSGKAPTCK---YVD 395
+ G +Y+C+ F L G + ++C G WS AP C+
Sbjct: 1747 TPFGDIPYGKEISYACDTHPDRGMTFNLIGESSIRCTSDPQGNGVWSSPAPRCELSVPAA 1806
Query: 396 CGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCE 454
C P I NGHY + + G Y CD Y L C G WS C+
Sbjct: 1807 CPHPPKIQNGHYIGGHVSLYLPGMTISYICDPGYLLVGKGFI--FCTDQGIWSQLDHYCK 1864
Query: 455 LITCPEPEVPKGGYVVGYDLNVH---STLEFHCEPGHLLVGQASLKCTRQGDWDNMSP 509
+ C P G V+ + CE G+ L G +C WD
Sbjct: 1865 EVNCSFPLFMNGISKELEMKKVYHYGDYVTLKCEDGYTLEGSPWSQCQADDRWDPPLA 1922
Score = 190 bits (483), Expect = 3e-51
Identities = 83/350 (23%), Positives = 125/350 (35%), Gaps = 28/350 (8%)
Query: 188 CVVLDGGRGWLWNDVGCKLDYLHWICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYAC 247
C G G + H + + + F +G+++ Y C
Sbjct: 429 CTSDPQGNGVWSSPAPRCGILGHCQAPDHFLFAKLKTQTNASDF------PIGTSLKYEC 482
Query: 248 PEGNMLVGSATRTCKEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACH 307
+ W+ C+ C +G V + T G+ Y+C
Sbjct: 483 RPEYYGRPFSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHV-ITDIQVGSRINYSCT 541
Query: 308 ENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT---GSVAT 361
+ LIG + C G+ W+ P C C PP I+ G ++ R GSV T
Sbjct: 542 TGHRLIGHSSAECILSGNAAHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVT 601
Query: 362 YSCEPG------FILFGSNELKC----GLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLN 411
Y C PG F L G + C G WSG AP C + +P N++NG N
Sbjct: 602 YRCNPGSGGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDN 661
Query: 412 GTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGGYVV 470
+ + V E+ C + ++ C KW + PSC + P P+V
Sbjct: 662 RSLFSLNEVVEFRCQPGFVMKGPRRV--KCQALNKWEPELPSCSRVCQPPPDVLHAERTQ 719
Query: 471 GYDLNVH--STLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQFISFYFPP 518
N + + CEPG+ L G AS++CT QGDW +P
Sbjct: 720 RDKDNFSPGQEVFYSCEPGYDLRGAASMRCTPQGDWSPAAPTCEVKSCDD 769
Score = 187 bits (475), Expect = 4e-50
Identities = 67/321 (20%), Positives = 106/321 (33%), Gaps = 26/321 (8%)
Query: 211 WICQHNPANCGSPDRHLNTTFVGTVNT--KLGSTISYACPEGNM------LVGSATRTC- 261
+C P N F T G+ ++Y C G LVG + C
Sbjct: 1469 KAPICEIISCEPPPTISNGDFYSNNRTSFHNGTVVTYQCHTGPDGEQLFELVGERSIYCT 1528
Query: 262 ----KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRT-THGAVAIYACHENYTLIGET 316
+ G W+ P C + +E+ + + + C + ++G
Sbjct: 1529 SKDDQVGVWSSPPPRCISTNKCTAPEVENAIRVPGNRSFFSLTEIIRFRCQPGFVMVGSH 1588
Query: 317 RRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSN 374
C G+W P C P + G + G YSCEP + L G+
Sbjct: 1589 TVQCQTNGRWGPKLPHCSRVCQPPPEILHGEHTLSHQDNFSPGQEVFYSCEPSYDLRGAA 1648
Query: 375 ELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGA 434
L C GDWS +AP C C LL G+ + CD+ + L+ +
Sbjct: 1649 SLHCTPQGDWSPEAPRCTVKSCDDFLGQLPHGRVLLPLNLQLGAKVSFVCDEGFRLKGRS 1708
Query: 435 MRR-QVCMRDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLN---VHSTLEFHCEP---- 486
+ W+ P CE I CP P G G + + C+
Sbjct: 1709 ASHCVLAGMKALWNSSVPVCEQIFCPNPPAILNGRHTGTPFGDIPYGKEISYACDTHPDR 1768
Query: 487 --GHLLVGQASLKCTRQGDWD 505
L+G++S++CT +
Sbjct: 1769 GMTFNLIGESSIRCTSDPQGN 1789
Score = 172 bits (436), Expect = 4e-45
Identities = 79/325 (24%), Positives = 113/325 (34%), Gaps = 33/325 (10%)
Query: 217 PANCGSPDRHLNTTFVGTVNT--KLGSTISYAC------PEGNMLVGSATRTCKE----- 263
C SP N G G ++Y C L+G +T C
Sbjct: 377 QIFCPSPPVIPNGRHTGKPLEVFPFGKAVNYTCDPHPDRGTSFDLIGESTIRCTSDPQGN 436
Query: 264 GFWTGVAPTCQYVDCG-KLEHIEHGTVTLETTRT--THGAVAIYACHENYTLIGETRRVC 320
G W+ AP C + +H + +T + G Y C Y + C
Sbjct: 437 GVWSSPAPRCGILGHCQAPDHFLFAKLKTQTNASDFPIGTSLKYECRPEYYGRPFSIT-C 495
Query: 321 GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR-RTGSVATYSCEPGFILFGSNELKC- 378
D W+ + C C PP G+V + GS YSC G L G + +C
Sbjct: 496 LDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVITDIQVGSRINYSCTTGHRLIGHSSAECI 555
Query: 379 --GLGGDWSGKAPTCKYVDCGSPANIDNG-HYSLLNGTTTHGSVAEYTCDDDYWLEAGAM 435
G WS K P C+ + CG P I NG S +GSV Y C+
Sbjct: 556 LSGNAAHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNPGSGGRKVFE 615
Query: 436 R----RQVCMRD----GKWSGDTPSCELITCPEPEVPKGGYVV---GYDLNVHSTLEFHC 484
C + G WSG P C + P + G +V +++ +EF C
Sbjct: 616 LVGEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRC 675
Query: 485 EPGHLLVGQASLKCTRQGDWDNMSP 509
+PG ++ G +KC W+ P
Sbjct: 676 QPGFVMKGPRRVKCQALNKWEPELP 700
Score = 171 bits (434), Expect = 6e-45
Identities = 79/331 (23%), Positives = 116/331 (35%), Gaps = 35/331 (10%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNT--KLGSTISYAC------PEGNMLVGSATRTCKE 263
+C+ C SP N G G ++Y C L+G +T C
Sbjct: 824 VCE--QIFCPSPPVIPNGRHTGKPLEVFPFGKAVNYTCDPHPDRGTSFDLIGESTIRCTS 881
Query: 264 -----GFWTGVAPTCQYVDC-GKLEHIEHGTVTLETTRT--THGAVAIYACHENYTLIGE 315
G W+ AP C + +H + +T + G Y C Y
Sbjct: 882 DPQGNGVWSSPAPRCGILGHCQAPDHFLFAKLKTQTNASDFPIGTSLKYECRPEYYGRPF 941
Query: 316 TRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR-RTGSVATYSCEPGFILFGSN 374
+ C D W+ + C C PP G+V + GS YSC G L G +
Sbjct: 942 SI-TCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVITDIQVGSRINYSCTTGHRLIGHS 1000
Query: 375 ELKC---GLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLN-GTTTHGSVAEYTCDDDYWL 430
+C G WS K P C+ + CG P I NG + N +GSV Y C+
Sbjct: 1001 SAECILSGNTAHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRG 1060
Query: 431 EAGAMR--------RQVCMRDGKWSGDTPSCELITCPEPEVPKGGYVV---GYDLNVHST 479
+ G WSG P C + P + G +V +++
Sbjct: 1061 RKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEV 1120
Query: 480 LEFHCEPGHLLVGQASLKCTRQGDWDNMSPQ 510
+EF C+PG ++ G +KC W+ P
Sbjct: 1121 VEFRCQPGFVMKGPRRVKCQALNKWEPELPS 1151
Score = 168 bits (425), Expect = 8e-44
Identities = 64/266 (24%), Positives = 95/266 (35%), Gaps = 25/266 (9%)
Query: 217 PANCGSPDRHL-NTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAP 271
+C L + + +N +LG+ +S+ C EG L G + C + W P
Sbjct: 1667 VKSCDDFLGQLPHGRVLLPLNLQLGAKVSFVCDEGFRLKGRSASHCVLAGMKALWNSSVP 1726
Query: 272 TCQYVDCGKLEHIEHGTVTLETTRT-THGAVAIYACHEN------YTLIGETRRVC---- 320
C+ + C I +G T +G YAC + + LIGE+ C
Sbjct: 1727 VCEQIFCPNPPAILNGRHTGTPFGDIPYGKEISYACDTHPDRGMTFNLIGESSIRCTSDP 1786
Query: 321 GDGGKWNGTEPQCLFDW---CAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSN 374
G W+ P+C C PP+I G G +Y C+PG++L G
Sbjct: 1787 QGNGVWSSPAPRCELSVPAACPHPPKIQNGHYIGGHVSLYLPGMTISYICDPGYLLVGKG 1846
Query: 375 ELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAG 433
+ C G WS CK V+C P ++ L +G C+D Y LE
Sbjct: 1847 FIFCTDQGIWSQLDHYCKEVNCSFPLFMNGISKELEMKKVYHYGDYVTLKCEDGYTLEGS 1906
Query: 434 AMRRQVCMRDGKWSGDTPSCELITCP 459
C D +W C
Sbjct: 1907 PWS--QCQADDRWDPPLAKCTSRAHD 1930
Score = 164 bits (416), Expect = 1e-42
Identities = 79/334 (23%), Positives = 111/334 (33%), Gaps = 36/334 (10%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTV--NTKLGSTISYACPE------GNMLVGSATRTCKE 263
+ C +P LN GT + G ISY C L+G +T C
Sbjct: 1272 VPVCEHIFCPNPPAILNGRHTGTPSGDIPYGKEISYTCDPHPDRGMTFNLIGESTIRCTS 1331
Query: 264 -----GFWTGVAPTCQYVDCGKLEH------IEHGTVTLETTRTTHGAVAIYACHENYTL 312
G W+ AP C+ T+ + G Y C Y
Sbjct: 1332 DPHGNGVWSSPAPRCELSVRAGHCKTPEQFPFASPTIPINDFEFPVGTSLNYECRPGYFG 1391
Query: 313 IGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT-GSVATYSCEPGFILF 371
+ C + W+ E C C PP+ G+V + GS YSC GF L
Sbjct: 1392 KMFSIS-CLENLVWSSVEDNCRRKSCGPPPEPFNGMVHINTDTQFGSTVNYSCNEGFRLI 1450
Query: 372 GSNELKC---GLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDD 427
GS C G W KAP C+ + C P I NG + N T+ +G+V Y C
Sbjct: 1451 GSPSTTCLVSGNNVTWDKKAPICEIISCEPPPTISNGDFYSNNRTSFHNGTVVTYQCHTG 1510
Query: 428 YWL--------EAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVH-- 477
E + G WS P C + V + +
Sbjct: 1511 PDGEQLFELVGERSIYCTSKDDQVGVWSSPPPRCISTNKCTAPEVENAIRVPGNRSFFSL 1570
Query: 478 -STLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQ 510
+ F C+PG ++VG +++C G W P
Sbjct: 1571 TEIIRFRCQPGFVMVGSHTVQCQTNGRWGPKLPH 1604
>2xrb_A Complement regulatory protein CRRY; immune system, immunology;
2.50A {Rattus norvegicus} PDB: 2xrd_A
Length = 290
Score = 202 bits (516), Expect = 1e-60
Identities = 61/286 (21%), Positives = 96/286 (33%), Gaps = 23/286 (8%)
Query: 247 CPEGNMLVGSATRTCKE-GFWTGVAPTCQ---YVDCGKLEHIEHGTVTLETTRTT--HGA 300
VG C+ + C + T +T G
Sbjct: 3 ASSPLDPVGRLVAFCRGGVHLAVLLLFLSPSTLGQCPAPPLFPYAKPINPTDESTFPVGT 62
Query: 301 VAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT-GSV 359
Y C Y + + C W + C+ C P GIV + GS
Sbjct: 63 SLKYECRPGY-IKRQFSITCEVNSVWTSPQDVCIRKQCETPLDPQNGIVHVNTDIRFGSS 121
Query: 360 ATYSCEPGFILFGSNELKC---GLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTT-T 415
TY+C G+ L GS+ C W +AP C+ + C P +I NG + N
Sbjct: 122 ITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPPSIPNGDFFSPNREDFH 181
Query: 416 HGSVAEYTCDDDYWLEA-----GAMRRQ---VCMRDGKWSGDTPSCELITCPEPEVPKGG 467
+G V Y C+ D + G + + G WSG P C + P +
Sbjct: 182 YGMVVTYQCNTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQCIELNKCTPPHVENA 241
Query: 468 YVVGYDLNVH---STLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQ 510
+V + ++ +EF C+ G ++ G +S+ C W+ P
Sbjct: 242 VIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEPQLPS 287
Score = 185 bits (472), Expect = 2e-54
Identities = 65/283 (22%), Positives = 102/283 (36%), Gaps = 26/283 (9%)
Query: 194 GRGWLWNDVGCKLDYLHWICQHN-PANCGSPDRHLNTTFVGTVNT---KLGSTISYACPE 249
GR + G L L + C +P + + +G+++ Y C
Sbjct: 11 GRLVAFCRGGVHLAVLLLFLSPSTLGQCPAPPLFPYAKPINPTDESTFPVGTSLKYECRP 70
Query: 250 GNMLVGSATRTCKE-GFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHE 308
G + + TC+ WT C C ++G V + T G+ Y C+E
Sbjct: 71 GY-IKRQFSITCEVNSVWTSPQDVCIRKQCETPLDPQNGIVHVNTD-IRFGSSITYTCNE 128
Query: 309 NYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT---GSVATY 362
Y LIG + +C W+ P C C PP I G + R G V TY
Sbjct: 129 GYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPPSIPNGDFFSPNREDFHYGMVVTY 188
Query: 363 SCEPG------FILFGSNELKC----GLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNG 412
C F L G + C G G WSG P C ++ +P +++N N
Sbjct: 189 QCNTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQCIELNKCTPPHVENAVIVSKNK 248
Query: 413 TT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCE 454
+ + + E+ C D + ++ + C +W PSC
Sbjct: 249 SLFSLRDMVEFRCQDGFMMKGDSSV--YCRSLNRWEPQLPSCA 289
>3o8e_B Membrane cofactor protein; short consensus repeat, complement
control protein, fiber KN virus-receptor interaction,
cell adhesion-immunity complex; HET: NAG; 2.84A {Homo
sapiens} PDB: 2o39_C* 1ckl_A* 3inb_C* 3l89_M*
Length = 252
Score = 200 bits (511), Expect = 2e-60
Identities = 63/254 (24%), Positives = 90/254 (35%), Gaps = 19/254 (7%)
Query: 220 CGSPDRHLNTTFVGTVNT--KLGSTISYACPEGNMLVG--SATRTCKE-GFWTGVA-PTC 273
C P +G ++G + Y C +G + + C W V+ C
Sbjct: 1 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDAC 60
Query: 274 QYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTE 330
C + +G G + C+E Y LIGE C G W+G
Sbjct: 61 YRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKP 120
Query: 331 PQCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPG-----FILFGSNELKCGLGG 382
P C C PP+I G T S TYSC+P F L G + + CG
Sbjct: 121 PICEKVLCTPPPKIKNGKHTFSEVEVFEYLDAVTYSCDPAPGPDPFSLIGESTIYCGDNS 180
Query: 383 DWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMR 442
WS AP CK V C P + S + + + CD ++L+ G+ VC
Sbjct: 181 VWSRAAPECKVVKCRFPVVENGKQISGFGKKFYYKATVMFECDKGFYLD-GSDTI-VCDS 238
Query: 443 DGKWSGDTPSCELI 456
+ W P C +
Sbjct: 239 NSTWDPPVPKCLKV 252
Score = 190 bits (485), Expect = 1e-56
Identities = 56/248 (22%), Positives = 85/248 (34%), Gaps = 15/248 (6%)
Query: 278 CGKLEHIEHGTVTLETTRT-THGAVAIYACHENYTLIGE--TRRVCGDGGKWNGT-EPQC 333
C + E + + G Y C + Y I T +C W + C
Sbjct: 1 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDAC 60
Query: 334 LFDWCAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSNELKC---GLGGDWSGKA 388
+ C G + G + C G+ L G L C G WSGK
Sbjct: 61 YRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKP 120
Query: 389 PTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAM---RRQVCMRDG 444
P C+ V C P I NG ++ + Y+CD + ++ C +
Sbjct: 121 PICEKVLCTPPPKIKNGKHTFSEVEVFEYLDAVTYSCDPAPGPDPFSLIGESTIYCGDNS 180
Query: 445 KWSGDTPSCELITCPEPEVPKGGYV--VGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQG 502
WS P C+++ C P V G + G +T+ F C+ G L G ++ C
Sbjct: 181 VWSRAAPECKVVKCRFPVVENGKQISGFGKKFYYKATVMFECDKGFYLDGSDTIVCDSNS 240
Query: 503 DWDNMSPQ 510
WD P+
Sbjct: 241 TWDPPVPK 248
Score = 100 bits (250), Expect = 7e-24
Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 10/131 (7%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNT--KLGSTISYACPEGN-----MLVGSATRTCKE- 263
IC+ C P + N + + ++Y+C L+G +T C +
Sbjct: 122 ICE--KVLCTPPPKIKNGKHTFSEVEVFEYLDAVTYSCDPAPGPDPFSLIGESTIYCGDN 179
Query: 264 GFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDG 323
W+ AP C+ V C ++ + + A ++ C + + L G VC
Sbjct: 180 SVWSRAAPECKVVKCRFPVVENGKQISGFGKKFYYKATVMFECDKGFYLDGSDTIVCDSN 239
Query: 324 GKWNGTEPQCL 334
W+ P+CL
Sbjct: 240 STWDPPVPKCL 250
>3iyp_F Complement decay-accelerating factor; virus, receptor, complex,
echovirus, DAF, icosahedral virus; HET: DAO; 7.20A {Homo
sapiens}
Length = 381
Score = 203 bits (517), Expect = 1e-59
Identities = 60/307 (19%), Positives = 94/307 (30%), Gaps = 23/307 (7%)
Query: 219 NCGSPDRHLNTTFVGTVNT--KLGSTISYACPEGNMLVGS--ATRTCKE-GFWTGVAPTC 273
+CG P N T + I+Y C E + + + C + W+ + C
Sbjct: 35 DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFC 94
Query: 274 QYVDCGKLEHIEHGTVTLETTRTT---HGAVAIYACHENYTLIG--ETRRVCGDGGKWNG 328
C + ++ G V Y C Y + C KW+
Sbjct: 95 N-RSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWST 153
Query: 329 TEPQCLFDWCAEPPQISGGIVTTSGRRT-GSVATYSCEPGFILFGSNELKC---GLGGDW 384
C C P +I G + G G+ ++SC G+ LFGS C G W
Sbjct: 154 AVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQW 213
Query: 385 SGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRR-QVCMRD 443
S P C+ + C +P IDNG + Y C+ + + V +
Sbjct: 214 SDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDE 273
Query: 444 GKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGD 503
G+WSG P C + P ++ E + T
Sbjct: 274 GEWSGPPPECRGKSLTSKVPPTVQKPTTVNVPT-------TEVSPTSQKTTTKTTTPNAQ 326
Query: 504 WDNMSPQ 510
+P
Sbjct: 327 ATRSTPV 333
Score = 191 bits (487), Expect = 2e-55
Identities = 61/298 (20%), Positives = 95/298 (31%), Gaps = 31/298 (10%)
Query: 217 PANCGSPDRHLNTTFVGTV----NTKLGSTISYACPEGNMLVGSAT--RTCKE-GFWTGV 269
+C P R + + +G+ + Y C G S + TC + W+
Sbjct: 95 NRSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTA 154
Query: 270 APTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKW 326
C+ C I +G + + GA ++C+ Y L G T C G +W
Sbjct: 155 VEFCKKKSCPNPGEIRNGQIDV-PGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQW 213
Query: 327 NGTEPQCLFDWCAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSNELKC---GLG 381
+ P+C +C PPQI GI+ TY+C GF + G + + C
Sbjct: 214 SDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDE 273
Query: 382 GDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCM 441
G+WSG P C+ S + +N TT S T +
Sbjct: 274 GEWSGPPPECRGKSLTSKVPPTVQKPTTVNVPTTEVS---PTSQKTT--------TKTTT 322
Query: 442 RDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCT 499
+ + + TP P G +T L G T
Sbjct: 323 PNAQATRSTPVSRTTKHFHETTPNKGSGTTSG----TTRLLSGHTCFTLTGLLGTLVT 376
Score = 186 bits (472), Expect = 2e-53
Identities = 63/277 (22%), Positives = 101/277 (36%), Gaps = 22/277 (7%)
Query: 254 VGSATRTCKE-GFWTGVAPTC---QYVDCGKLEHIEHGTVTLETTRT-THGAVAIYACHE 308
V +A E + C + DCG + + LE + V Y C E
Sbjct: 8 VPAALPLLGELPRLLLLVLLCLPAVWQDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEE 67
Query: 309 NYTLIGETR--RVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT-----GSVAT 361
++ I + +C G +W+ E C C P +++ + G+V
Sbjct: 68 SFVKIPGEKDSVICLKGSQWSDIEEFCNRS-CEVPTRLNSASLKQPYITQNYFPVGTVVE 126
Query: 362 YSCEPGFILFGSN--ELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSV 419
Y C PG+ S +L C WS CK C +P I NG + G G+
Sbjct: 127 YECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGIL-FGAT 185
Query: 420 AEYTCDDDYWLEAGAMRR-QVCMRDGKWSGDTPSCELITCPEPEVPKGGYVVGYD--LNV 476
++C+ Y L + +WS P C I CP P G + G
Sbjct: 186 ISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGY 245
Query: 477 HSTLEFHCEPGHLLVGQASLKCT---RQGDWDNMSPQ 510
++ + C G ++G+ S+ CT +G+W P+
Sbjct: 246 RQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPE 282
Score = 145 bits (368), Expect = 9e-39
Identities = 44/233 (18%), Positives = 74/233 (31%), Gaps = 22/233 (9%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWT 267
C+ +C +P N G+TIS++C G L GS + C W+
Sbjct: 157 FCK--KKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWS 214
Query: 268 GVAPTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGG 324
P C+ + C I++G + E + YAC++ +T+IGE C D G
Sbjct: 215 DPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEG 274
Query: 325 KWNGTEPQCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDW 384
+W+G P+C + TT + E +
Sbjct: 275 EWSGPPPECRGKSLTSKVPPTVQKPTTVN-------VPTTEVSPTSQKTTTKTTTPNAQA 327
Query: 385 SGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRR 437
+ P + + G TT G+ + + L
Sbjct: 328 TRSTPVSRTTKHFHETTPNKG------SGTTSGTTRLLSGHTCFTLTGLLGTL 374
Score = 36.6 bits (84), Expect = 0.022
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 240 GSTISYACPEGNMLVGSATRTCKEGFWT 267
G+T + L G G T
Sbjct: 354 GTTRLLSGHTCFTLTGLLGTLVTMGLLT 381
>2wii_C H factor 1, complement factor H; immune system, sushi, secreted,
polymorphism, glycoprotein, complement system,
complement pathway, immune response; HET: NAG BMA; 2.70A
{Homo sapiens} PDB: 2rlp_A 2rlq_A
Length = 277
Score = 197 bits (503), Expect = 6e-59
Identities = 61/267 (22%), Positives = 89/267 (33%), Gaps = 15/267 (5%)
Query: 220 CGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKEGFWTGV--APTCQYVD 277
L ++ G+ Y C G +G+ C++G W + CQ
Sbjct: 13 PRRNTEILTGSWSDQ-TYPEGTQAIYKCRPGYRSLGNIIMVCRKGEWVALNPLRKCQKRP 71
Query: 278 CGKLEHIEHGTVTL-ETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFD 336
CG GT TL +G A+Y C+E Y L+GE D W P C
Sbjct: 72 CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVV 131
Query: 337 WCAEPPQISGGIVTTSGRRT------GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPT 390
C G + +S G + C G+ + G E+ C G WS + P
Sbjct: 132 KCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPK 191
Query: 391 CKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDT 450
C + C SP ++ NG +Y C+ Y VC G W
Sbjct: 192 CVEISCKSP-DVINGSPISQKIIYKENERFQYKCNMGYEYS-ERGDA-VCTESG-WRP-L 246
Query: 451 PSCELITCPEPEVPKGGYVVGYDLNVH 477
PSCE + + ++ H
Sbjct: 247 PSCEEARGGPEQKLISEEDLNSAVDHH 273
Score = 190 bits (483), Expect = 5e-56
Identities = 58/245 (23%), Positives = 85/245 (34%), Gaps = 14/245 (5%)
Query: 270 APTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKW-NG 328
A C + + I G+ + +T G AIY C Y +G VC G
Sbjct: 5 AEDCNELPPRRNTEILTGSWSDQTY--PEGTQAIYKCRPGYRSLGNIIMVCRKGEWVALN 62
Query: 329 TEPQCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSNELKCGLGGDWS 385
+C C P G T +G G A Y+C G+ L G + W+
Sbjct: 63 PLRKCQKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWT 122
Query: 386 GKAPTCKYVDCGSPANIDNGHYS----LLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCM 441
P C+ V C +NG + G + C+ Y +E G C
Sbjct: 123 NDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIE-GDEEMH-CS 180
Query: 442 RDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVH-STLEFHCEPGHLLVGQASLKCTR 500
DG WS + P C I+C P+V G + + ++ C G+ + CT
Sbjct: 181 DDGFWSKEKPKCVEISCKSPDVINGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTE 240
Query: 501 QGDWD 505
G W
Sbjct: 241 SG-WR 244
Score = 149 bits (378), Expect = 4e-41
Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 10/188 (5%)
Query: 331 PQCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGG-DWSGKAP 389
C +I G + G+ A Y C PG+ G+ + C G
Sbjct: 6 EDCNELPPRRNTEILTGSWSDQTYPEGTQAIYKCRPGYRSLGNIIMVCRKGEWVALNPLR 65
Query: 390 TCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSG 448
C+ CG P + G ++L G +G A YTC++ Y L R W+
Sbjct: 66 KCQKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYR--ECDTDGWTN 123
Query: 449 DTPSCELITCPEPEVPKGGYVVGYDL------NVHSTLEFHCEPGHLLVGQASLKCTRQG 502
D P CE++ C P+ G +V + + + F C G+ + G + C+ G
Sbjct: 124 DIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDG 183
Query: 503 DWDNMSPQ 510
W P+
Sbjct: 184 FWSKEKPK 191
Score = 88.8 bits (220), Expect = 9e-20
Identities = 28/130 (21%), Positives = 42/130 (32%), Gaps = 10/130 (7%)
Query: 385 SGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDG 444
+ A C + I G +S + T G+ A Y C Y + VC R G
Sbjct: 2 AQPAEDCNELPPRRNTEILTGSWS--DQTYPEGTQAIYKCRPGYRSLGNIIM--VC-RKG 56
Query: 445 KWSG--DTPSCELITCPEPEVPKGGYVV---GYDLNVHSTLEFHCEPGHLLVGQASLKCT 499
+W C+ C P G G + C G+ L+G+ + +
Sbjct: 57 EWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYREC 116
Query: 500 RQGDWDNMSP 509
W N P
Sbjct: 117 DTDGWTNDIP 126
Score = 55.7 bits (134), Expect = 1e-08
Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 3/79 (3%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKEGFWTGVAP 271
C +C SPD + + K Y C G C E W + P
Sbjct: 191 KCV--EISCKSPDVINGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESGWRPL-P 247
Query: 272 TCQYVDCGKLEHIEHGTVT 290
+C+ G + +
Sbjct: 248 SCEEARGGPEQKLISEEDL 266
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 211 bits (539), Expect = 7e-59
Identities = 72/306 (23%), Positives = 114/306 (37%), Gaps = 23/306 (7%)
Query: 226 HLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC---KEGFWTGVAPTCQYVDCGKLE 282
H+ + ++ +C +G L G A + C + G W P C+ + C
Sbjct: 644 HVRQSLQELPAGSRVELVNTSCQDGYQLTGHAYQMCQDAENGIWFKKIPLCKVIHCHPPP 703
Query: 283 HIEHGTVTLETTRT-THGAVAIYACHENYTLIGETRRVC----GDGGKWNGTEPQCL--- 334
I +G T +G Y C + + L+GE + C G W+G PQCL
Sbjct: 704 VIVNGKHTGMMAENFLYGNEVSYECDQGFYLLGEKKLQCRSDSKGHGSWSGPSPQCLRSP 763
Query: 335 -FDWCAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTC 391
C P G + + + C PGFI+ GS ++C W PTC
Sbjct: 764 PVTRCPNPEVKHGYKLNKTHSAYSHNDIVYVDCNPGFIMNGSRVIRCHTDNTWVPGVPTC 823
Query: 392 K---YVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWS 447
++ C P NG+++ N + G Y+CD Y L A+ C +G WS
Sbjct: 824 IKKAFIGCPPPPKTPNGNHTGGNIARFSPGMSILYSCDQGYLLVGEALLL--CTHEGTWS 881
Query: 448 GDTPSCELITCPEPEVPKGGYVVGYDLNVH---STLEFHCEPGHLLVGQASLKCTRQGDW 504
P C+ + C P G ++ + + CE G++L G +C W
Sbjct: 882 QPAPHCKEVNCSSPADMDGIQKGLEPRKMYQYGAVVTLECEDGYMLEGSPQSQCQSDHQW 941
Query: 505 DNMSPQ 510
+
Sbjct: 942 NPPLAV 947
Score = 207 bits (528), Expect = 2e-57
Identities = 88/352 (25%), Positives = 127/352 (36%), Gaps = 35/352 (9%)
Query: 183 NGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHNPANCGSPDRHLNTTFVGTVNT--KLG 240
NG ++ W + P C + N G
Sbjct: 105 NGNKSVWCQANN-MWGPTRLPT-------CVSVFPLECPALPMIHNGHHTSENVGSIAPG 156
Query: 241 STISYACPEGNMLVGSATRTCKE-GFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTTHG 299
+++Y+C G +LVG C G W+ V PTC+ C L +G V E G
Sbjct: 157 LSVTYSCESGYLLVGEKIINCLSSGKWSAVPPTCEEARCKSLGRFPNGKVK-EPPILRVG 215
Query: 300 AVAIYACHENYTLIGETRRVC--GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT- 356
A + C E Y L G C G P C +C PP I G +
Sbjct: 216 VTANFFCDEGYRLQGPPSSRCVIAGQGVAWTKMPVCEEIFCPSPPPILNGRHIGNSLANV 275
Query: 357 --GSVATYSCEP------GFILFGSNELKCGLG----GDWSGKAPT----CKYVDCGSPA 400
GS+ TY+C+P FIL G + L+C + G WSG AP V C P
Sbjct: 276 SYGSIVTYTCDPDPEEGVNFILIGESTLRCTVDSQKTGTWSGPAPRCELSTSAVQCPHPQ 335
Query: 401 NIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPE 460
+ S T+ + C + L+ R C G W P CE
Sbjct: 336 ILRGRMVSGQKDRYTYNDTVIFACMFGFTLKGSKQIR--CNAQGTWEPSAPVCEKECQAP 393
Query: 461 PEVPKGGYVV--GYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQ 510
P + G + +++++ C PG++LVG+ S++CT +G W PQ
Sbjct: 394 PNILNGQKEDRHMVRFDPGTSIKYSCNPGYVLVGEESIQCTSEGVWTPPVPQ 445
Score = 204 bits (521), Expect = 2e-56
Identities = 83/313 (26%), Positives = 118/313 (37%), Gaps = 28/313 (8%)
Query: 219 NCGSPDRHLNTTFVGTVNT-KLGSTISYACPEGNMLVGSATRTC-----KEGFWTGVAPT 272
+CGSP LN +G+ I Y+C L+G + C +G W AP
Sbjct: 2 SCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPK 61
Query: 273 CQYVD----CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNG 328
C+Y + C + + G +T HG +AC N+++ G C W
Sbjct: 62 CEYFNKYSSCPEPI-VPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGP 120
Query: 329 TEPQCLFD----WCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSNELKCGLG 381
T C P I G T+ + G TYSCE G++L G + C
Sbjct: 121 TRLPTCVSVFPLECPALPMIHNGHHTSENVGSIAPGLSVTYSCESGYLLVGEKIINCLSS 180
Query: 382 GDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCM 441
G WS PTC+ C S NG G A + CD+ Y L+ R V
Sbjct: 181 GKWSAVPPTCEEARCKSLGRFPNGKVK-EPPILRVGVTANFFCDEGYRLQGPPSSRCVIA 239
Query: 442 RDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVH---STLEFHCEP------GHLLVG 492
G P CE I CP P G +G L S + + C+P +L+G
Sbjct: 240 GQGVAWTKMPVCEEIFCPSPPPILNGRHIGNSLANVSYGSIVTYTCDPDPEEGVNFILIG 299
Query: 493 QASLKCTRQGDWD 505
+++L+CT
Sbjct: 300 ESTLRCTVDSQKT 312
Score = 203 bits (518), Expect = 5e-56
Identities = 75/316 (23%), Positives = 110/316 (34%), Gaps = 21/316 (6%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNT-KLGSTISYACPEGNMLVGSATRTCKE-GFWTGV 269
+ C P G + T+ +AC G L GS C G W
Sbjct: 323 ELSTSAVQCPHPQILRGRMVSGQKDRYTYNDTVIFACMFGFTLKGSKQIRCNAQGTWEPS 382
Query: 270 APTCQYVDCGKLEHIEHGTVT-LETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNG 328
AP C+ +C +I +G R G Y+C+ Y L+GE C G W
Sbjct: 383 APVCE-KECQAPPNILNGQKEDRHMVRFDPGTSIKYSCNPGYVLVGEESIQCTSEGVWTP 441
Query: 329 TEPQCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKA 388
PQC C + + SC G+ L GS +C W +
Sbjct: 442 PVPQCKVAACEATGRQLLT--KPQHQFVRPDVNSSCGEGYKLSGSVYQECQGTIPWFMEI 499
Query: 389 PTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDD------DYWLEAGAMRR--QV 439
CK + C P I NG ++ + +G+ YTC+ ++ L + R
Sbjct: 500 RLCKEITCPPPPVIYNGAHTGSSLEDFPYGTTVTYTCNPGPERGVEFSLIGESTIRCTSN 559
Query: 440 CMRDGKWSGDTPSCEL----ITCPEPEVPKGGYVVGYDLNVH--STLEFHCEPGHLLVGQ 493
G WSG P C+L + C + G + G + T+ F C G L G
Sbjct: 560 DQERGTWSGPAPLCKLSLLAVQCSHVHIANGYKISGKEAPYFYNDTVTFKCYSGFTLKGS 619
Query: 494 ASLKCTRQGDWDNMSP 509
+ ++C WD P
Sbjct: 620 SQIRCKADNTWDPEIP 635
Score = 199 bits (508), Expect = 8e-55
Identities = 84/322 (26%), Positives = 125/322 (38%), Gaps = 24/322 (7%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC-KEGFWTGVA 270
+ ++C P G+ + G ++++AC + G+ + C W
Sbjct: 63 EYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTR 122
Query: 271 PTCQY----VDCGKLEHIEHGTVTLETTRT-THGAVAIYACHENYTLIGETRRVCGDGGK 325
++C L I +G T E + G Y+C Y L+GE C GK
Sbjct: 123 LPTCVSVFPLECPALPMIHNGHHTSENVGSIAPGLSVTYSCESGYLLVGEKIINCLSSGK 182
Query: 326 WNGTEPQCLFDWCAEPPQISGGIVTTSGR-RTGSVATYSCEPGFILFGSNELKCGLGGD- 383
W+ P C C + G V R G A + C+ G+ L G +C + G
Sbjct: 183 WSAVPPTCEEARCKSLGRFPNGKVKEPPILRVGVTANFFCDEGYRLQGPPSSRCVIAGQG 242
Query: 384 -WSGKAPTCKYVDCGSPANIDNG-HYSLLNGTTTHGSVAEYTCDDDYWLEAGAM----RR 437
K P C+ + C SP I NG H ++GS+ YTCD D +
Sbjct: 243 VAWTKMPVCEEIFCPSPPPILNGRHIGNSLANVSYGSIVTYTCDPDPEEGVNFILIGEST 302
Query: 438 QVCMRD----GKWSGDTPSCEL----ITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPG 487
C D G WSG P CEL + CP P++ +G V G + T+ F C G
Sbjct: 303 LRCTVDSQKTGTWSGPAPRCELSTSAVQCPHPQILRGRMVSGQKDRYTYNDTVIFACMFG 362
Query: 488 HLLVGQASLKCTRQGDWDNMSP 509
L G ++C QG W+ +P
Sbjct: 363 FTLKGSKQIRCNAQGTWEPSAP 384
Score = 197 bits (502), Expect = 6e-54
Identities = 74/319 (23%), Positives = 115/319 (36%), Gaps = 31/319 (9%)
Query: 220 CGSPDRHLNTTFVGTVNT--KLGSTISYACPEGNM------LVGSATRTC-----KEGFW 266
C P N G+ G+T++Y C G L+G +T C + G W
Sbjct: 507 CPPPPVIYNGAHTGSSLEDFPYGTTVTYTCNPGPERGVEFSLIGESTIRCTSNDQERGTW 566
Query: 267 TGVAPTCQ----YVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGD 322
+G AP C+ V C + ++ + + + C+ +TL G ++ C
Sbjct: 567 SGPAPLCKLSLLAVQCSHVHIANGYKISGKEAPYFYNDTVTFKCYSGFTLKGSSQIRCKA 626
Query: 323 GGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKC--GL 380
W+ P C + C Q + S + SC+ G+ L G C
Sbjct: 627 DNTWDPEIPVCEKETCQHVRQSLQELPAGS---RVELVNTSCQDGYQLTGHAYQMCQDAE 683
Query: 381 GGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMR--R 437
G W K P CK + C P I NG ++ + +G+ Y CD ++L R
Sbjct: 684 NGIWFKKIPLCKVIHCHPPPVIVNGKHTGMMAENFLYGNEVSYECDQGFYLLGEKKLQCR 743
Query: 438 QVCMRDGKWSGDTPSCE----LITCPEPEVPKGGYVVGYDLNVH--STLEFHCEPGHLLV 491
G WSG +P C + CP PEV G + + C PG ++
Sbjct: 744 SDSKGHGSWSGPSPQCLRSPPVTRCPNPEVKHGYKLNKTHSAYSHNDIVYVDCNPGFIMN 803
Query: 492 GQASLKCTRQGDWDNMSPQ 510
G ++C W P
Sbjct: 804 GSRVIRCHTDNTWVPGVPT 822
Score = 195 bits (496), Expect = 4e-53
Identities = 72/314 (22%), Positives = 112/314 (35%), Gaps = 26/314 (8%)
Query: 217 PANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC---KEGFWTGVAPTC 273
A C S R N ++G T ++ C EG L G + C +G P C
Sbjct: 192 EARCKSLGRFPNGKVKEPPILRVGVTANFFCDEGYRLQGPPSSRCVIAGQGVAWTKMPVC 251
Query: 274 QYVDCGKLEHIEHGTVTLETTRT-THGAVAIYACHE------NYTLIGETRRVCGDGGKW 326
+ + C I +G + ++G++ Y C N+ LIGE+ C +
Sbjct: 252 EEIFCPSPPPILNGRHIGNSLANVSYGSIVTYTCDPDPEEGVNFILIGESTLRCTVDSQK 311
Query: 327 NGT--------EPQCLFDWCAEPPQISGGIVTTSGRR--TGSVATYSCEPGFILFGSNEL 376
GT E C P + G +V+ R ++C GF L GS ++
Sbjct: 312 TGTWSGPAPRCELSTSAVQCPHPQILRGRMVSGQKDRYTYNDTVIFACMFGFTLKGSKQI 371
Query: 377 KCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAM 435
+C G W AP C+ +C +P NI NG + G+ +Y+C+ Y L
Sbjct: 372 RCNAQGTWEPSAPVCE-KECQAPPNILNGQKEDRHMVRFDPGTSIKYSCNPGYVLVGEES 430
Query: 436 RRQVCMRDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQAS 495
C +G W+ P C++ C V + C G+ L G
Sbjct: 431 I--QCTSEGVWTPPVPQCKVAACEATGRQLLTKPQHQ--FVRPDVNSSCGEGYKLSGSVY 486
Query: 496 LKCTRQGDWDNMSP 509
+C W
Sbjct: 487 QECQGTIPWFMEIR 500
Score = 183 bits (465), Expect = 3e-49
Identities = 67/261 (25%), Positives = 96/261 (36%), Gaps = 20/261 (7%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNT--KLGSTISYACPEGNMLVGSATRTC-----KEG 264
I +C P +N G + G+ +SY C +G L+G C G
Sbjct: 691 IPLCKVIHCHPPPVIVNGKHTGMMAENFLYGNEVSYECDQGFYLLGEKKLQCRSDSKGHG 750
Query: 265 FWTGVAPTC----QYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC 320
W+G +P C C E + + +H + C+ + + G C
Sbjct: 751 SWSGPSPQCLRSPPVTRCPNPEVKHGYKLNKTHSAYSHNDIVYVDCNPGFIMNGSRVIRC 810
Query: 321 GDGGKWNGTEPQCL---FDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSN 374
W P C+ F C PP+ G T G YSC+ G++L G
Sbjct: 811 HTDNTWVPGVPTCIKKAFIGCPPPPKTPNGNHTGGNIARFSPGMSILYSCDQGYLLVGEA 870
Query: 375 ELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAG 433
L C G WS AP CK V+C SPA++D L +G+V C+D Y LE
Sbjct: 871 LLLCTHEGTWSQPAPHCKEVNCSSPADMDGIQKGLEPRKMYQYGAVVTLECEDGYMLEGS 930
Query: 434 AMRRQVCMRDGKWSGDTPSCE 454
C D +W+ C
Sbjct: 931 PQS--QCQSDHQWNPPLAVCR 949
Score = 176 bits (448), Expect = 7e-47
Identities = 63/249 (25%), Positives = 96/249 (38%), Gaps = 17/249 (6%)
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC----GDGGKWNGTEP 331
+ CG I +G ++ +T G V Y+C + LIGE +C G W+ P
Sbjct: 1 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 60
Query: 332 QCLFDW----CAEPPQISGGIVTTSGRRT-GSVATYSCEPGFILFGSNELKCGLGGDWSG 386
+C + C EP G + S G T++C+ F + G+ + C W
Sbjct: 61 KCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGP 120
Query: 387 KAPTCKY----VDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCM 441
++C + I NGH++ N + G Y+C+ Y L + C+
Sbjct: 121 TRLPTCVSVFPLECPALPMIHNGHHTSENVGSIAPGLSVTYSCESGYLLVGEKIIN--CL 178
Query: 442 RDGKWSGDTPSCELITCPEPEVPKGGYV-VGYDLNVHSTLEFHCEPGHLLVGQASLKCTR 500
GKWS P+CE C G V L V T F C+ G+ L G S +C
Sbjct: 179 SSGKWSAVPPTCEEARCKSLGRFPNGKVKEPPILRVGVTANFFCDEGYRLQGPPSSRCVI 238
Query: 501 QGDWDNMSP 509
G +
Sbjct: 239 AGQGVAWTK 247
>1ok3_A CD55, CR, DAF, complement decay-accelerating factor; regulator of
complement pathway, regulator of complement; 2.2A {Homo
sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB:
1ojw_A 1ojy_A 1ok1_A 1ok2_A 1ojv_A 1ok9_A 1m11_R 1nwv_A
2qzh_A 2qzf_A
Length = 254
Score = 192 bits (490), Expect = 2e-57
Identities = 56/251 (22%), Positives = 85/251 (33%), Gaps = 16/251 (6%)
Query: 219 NCGSPDRHLNTTFVGTVNT--KLGSTISYACPEGNMLVGS--ATRTCKE-GFWTGVAPTC 273
+CG P N T + I+Y C E + + + C + W+ + C
Sbjct: 3 DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFC 62
Query: 274 QYVDCGKLEHIEHGTVTLETTRTT---HGAVAIYACHENYTLIG--ETRRVCGDGGKWNG 328
C + ++ G V Y C Y + C KW+
Sbjct: 63 N-RSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWST 121
Query: 329 TEPQCLFDWCAEPPQISGGIVTTSGRRT-GSVATYSCEPGFILFGSNELKC---GLGGDW 384
C C P +I G + G G+ ++SC G+ LFGS C G W
Sbjct: 122 AVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQW 181
Query: 385 SGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRR-QVCMRD 443
S P C+ + C +P IDNG + Y C+ + + V +
Sbjct: 182 SDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDE 241
Query: 444 GKWSGDTPSCE 454
G+WSG P C
Sbjct: 242 GEWSGPPPECR 252
Score = 185 bits (470), Expect = 2e-54
Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 18/250 (7%)
Query: 277 DCGKLEHIEHGTVTLETTRT-THGAVAIYACHENYTLIGETR--RVCGDGGKWNGTEPQC 333
DCG + + LE + V Y C E++ I + +C G +W+ E C
Sbjct: 3 DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFC 62
Query: 334 LFDWCAEPPQISGGIVTTSGRRT-----GSVATYSCEPGFILFGS--NELKCGLGGDWSG 386
C P +++ + G+V Y C PG+ S +L C WS
Sbjct: 63 NRS-CEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWST 121
Query: 387 KAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRR-QVCMRDGK 445
CK C +P I NG + G G+ ++C+ Y L + +
Sbjct: 122 AVEFCKKKSCPNPGEIRNGQIDVPGGIL-FGATISFSCNTGYKLFGSTSSFCLISGSSVQ 180
Query: 446 WSGDTPSCELITCPEPEVPKGGYVVGYDLNVH--STLEFHCEPGHLLVGQASLKCT---R 500
WS P C I CP P G + G + ++ + C G ++G+ S+ CT
Sbjct: 181 WSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNND 240
Query: 501 QGDWDNMSPQ 510
+G+W P+
Sbjct: 241 EGEWSGPPPE 250
Score = 105 bits (262), Expect = 2e-25
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWT 267
C+ +C +P N G+TIS++C G L GS + C W+
Sbjct: 125 FCK--KKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWS 182
Query: 268 GVAPTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGG 324
P C+ + C I++G + E + YAC++ +T+IGE C D G
Sbjct: 183 DPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEG 242
Query: 325 KWNGTEPQC 333
+W+G P+C
Sbjct: 243 EWSGPPPEC 251
Score = 43.0 bits (101), Expect = 1e-04
Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 455 LITCPEPEVPKGGYVVGYDLN---VHSTLEFHCEPGHLLVG--QASLKCTRQGDWDNMSP 509
+ C P + + + CE + + + S+ C + W ++
Sbjct: 1 MQDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEE 60
Query: 510 Q 510
Sbjct: 61 F 61
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 199 bits (506), Expect = 3e-54
Identities = 69/302 (22%), Positives = 101/302 (33%), Gaps = 19/302 (6%)
Query: 219 NCGSPDRHLNTTFVGTVNTK----LGSTISYACPEGNMLVGSATRTCKEGFWTGV--APT 272
+C NT + + G+ Y C G +G+ C++G W +
Sbjct: 2 DCNELPPRRNTEILTGSWSDQTYPEGTQAIYKCRPGYRSLGNVIMVCRKGEWVALNPLRK 61
Query: 273 CQYVDCGKLEHIEHGTVTL-ETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEP 331
CQ CG GT TL +G A+Y C+E Y L+GE D W P
Sbjct: 62 CQKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIP 121
Query: 332 QCLFDWCAEPPQISGGIVTTSGRRT------GSVATYSCEPGFILFGSNELKCGLGGDWS 385
C C G + +S G + C G+ + G E+ C G WS
Sbjct: 122 ICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWS 181
Query: 386 GKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGK 445
+ P C + C SP ++ NG +Y C+ Y VC G
Sbjct: 182 KEKPKCVEISCKSP-DVINGSPISQKIIYKENERFQYKCNMGYEYSERGDA--VCTESGW 238
Query: 446 WSGDTPSCELITCPEPEVPKGGYV-VGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDW 504
PSCE +C P +P G Y + + + C G + + W
Sbjct: 239 RP--LPSCEEKSCDNPYIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTGW 296
Query: 505 DN 506
Sbjct: 297 IP 298
Score = 193 bits (491), Expect = 3e-52
Identities = 72/321 (22%), Positives = 110/321 (34%), Gaps = 16/321 (4%)
Query: 212 ICQHNPANCGSPDRHLNTTFVG-TVNTKLGSTISYACPEGNMLVGSATRTCKEGFWTGVA 270
C P + N+ + T+N + G +S C E ++ TCK+G W +
Sbjct: 785 CSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQEGEEITCKDGRWQSIP 844
Query: 271 PTCQYVDCGKLEHIEHGTVTLET---TRTTHGAVAIYACHENYTLIGETRRVCGDGGKWN 327
+ + C + IEHGT+ HG Y C + + E C G
Sbjct: 845 LCVEKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCYMGKWS- 903
Query: 328 GTEPQCLFDWCAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSNELKCGLGGDWS 385
+ PQC C PP+IS G+V G TY C GF + G KC LG WS
Sbjct: 904 -SPPQCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKC-LGEKWS 961
Query: 386 GKAPTCKYVDCGSPANIDNG-HYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDG 444
P+C DC S + +N G YTC Y ++ + V +
Sbjct: 962 H-PPSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGAS---NVTCINS 1017
Query: 445 KWSGDTPSCELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLLVGQASLKCTRQG 502
+W+G + P V V + + C + + G + C
Sbjct: 1018 RWTGRPTCRDTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGN 1077
Query: 503 DWDNMSPQFISFYFPPSETIS 523
+ + + P I
Sbjct: 1078 WTEPPQCKDSTGKCGPPPPID 1098
Score = 185 bits (471), Expect = 8e-50
Identities = 70/327 (21%), Positives = 106/327 (32%), Gaps = 31/327 (9%)
Query: 196 GWLWNDVGCKLDYLHWICQHNPANCGSPDRHLNTTFVGTVNT-KLGSTISYACPEGNMLV 254
G + C+ C SP + ++ + G ++Y C EG +
Sbjct: 900 GKWSSPPQCE-----------GLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGID 948
Query: 255 GSATRTCKEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRT-THGAVAIYACHENYTLI 313
G A C W+ P+C DC L E+ E G Y C Y +
Sbjct: 949 GPAIAKCLGEKWSH-PPSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMD 1007
Query: 314 GETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFIL 370
G + C + +W G C PP + + + G Y C + +
Sbjct: 1008 GASNVTCINS-RWTGRPTCRDTS-CVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEM 1065
Query: 371 FGSNELKCGLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYW 429
FG E+ C G CG P IDNG + + S EY C + Y
Sbjct: 1066 FGDEEVMCLNGNWTEPPQCKDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQ 1125
Query: 430 LEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVH-------STLEF 482
LE C R+G+WS P C E+ + + ++EF
Sbjct: 1126 LEGNKRI--TC-RNGQWSE-PPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEF 1181
Query: 483 HCEPGHLLVGQASLKCTRQGDWDNMSP 509
C+ G+ L ++ T D P
Sbjct: 1182 VCKRGYRLSSRSHTLRTTCWDGKLEYP 1208
Score = 184 bits (467), Expect = 3e-49
Identities = 52/309 (16%), Positives = 93/309 (30%), Gaps = 13/309 (4%)
Query: 210 HWICQHNPANCGSPDRHLNTTFVGTVNT-KLGSTISYACPEGNMLVGSATRTCKE--GFW 266
W Q +N KL T+ Y C +G +T
Sbjct: 480 GWSAQPTCIKSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTTGSIVCGYNG 539
Query: 267 TGVAPTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKW 326
P C +C + H + + G V ++C +T++G C G
Sbjct: 540 WSDLPICYERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGLS 599
Query: 327 NGTEP-QCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSNELKCGLGG 382
+ C PP++ G V + V Y C P F++ G N+++C G
Sbjct: 600 PDLPICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVDGE 659
Query: 383 DWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMR 442
+ + CG +++G L + +G E+ C + + + +
Sbjct: 660 WTTLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHR---SITCI 716
Query: 443 DGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVG--QASLKCTR 500
G W+ P C I + ++ L + + + G
Sbjct: 717 HGVWTQ-LPQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCRGKEGWIHTVCI 775
Query: 501 QGDWDNMSP 509
G WD
Sbjct: 776 NGRWDPEVN 784
Score = 172 bits (437), Expect = 2e-45
Identities = 58/309 (18%), Positives = 89/309 (28%), Gaps = 18/309 (5%)
Query: 212 ICQHNPANCGSPD-----RHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKE-GF 265
IC+ C + +++ G + + C G + G C + GF
Sbjct: 122 ICE--VVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGF 179
Query: 266 WTGVAPTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGK 325
W+ P C + C + + +G+ + Y C+ Y VC + G
Sbjct: 180 WSKEKPKCVEISCKSPD-VINGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESGW 238
Query: 326 WNGTEPQCLFDWCAEPPQISGGIVTTSGR-RTGSVATYSCEPGFILFGSNELKCGLGGDW 384
P C C P +G + RTG TY C GF W
Sbjct: 239 R--PLPSCEEKSCDNPYIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTGW 296
Query: 385 SGKAPTCKYVDCGSPANIDNGHYSL----LNGTTTHGSVAEYTCDDDYWLEAGAMRRQVC 440
AP C C P G Y G Y CD+ + +G+ +
Sbjct: 297 IP-APRCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIH 355
Query: 441 MRDGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTR 500
WS P P E G +++ C PG+ L +
Sbjct: 356 CTQDGWSPAVPCLRKCYFPYLENGYNQ-NHGRKFVQGKSIDVACHPGYALPKAQTTVTCM 414
Query: 501 QGDWDNMSP 509
+ W
Sbjct: 415 ENGWSPTPR 423
Score = 167 bits (423), Expect = 1e-43
Identities = 54/338 (15%), Positives = 85/338 (25%), Gaps = 23/338 (6%)
Query: 180 NNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHNPANCGSPDRHLNTTFVGTVNTKL 239
N + C L + + R +
Sbjct: 278 NGFYPATRGNTAKCTSTGWIPAPRCTLKPCDYPDIKHGGLYHENMRRPYFPV------AV 331
Query: 240 GSTISYACPEGNMLVGSATR---TCKEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTRT 296
G SY C E + C + W+ P + ++E+G +
Sbjct: 332 GKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFP---YLENGYNQNHGRKF 388
Query: 297 THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEP-QCLFDWCAEPPQISGGIVTTSGR- 354
G ACH Y L V W+ T + I G ++ S
Sbjct: 389 VQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYT 448
Query: 355 -RTGSVATYSCEPGFILFGSNELKC--GLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLN 411
A Y C+ G++ WS + K N
Sbjct: 449 YALKEKAKYQCKLGYVTADGETSGSIRCGKDGWSAQPTCIK---SCDIPVFMNARTKNDF 505
Query: 412 GTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGGYVV- 470
+Y C D Y + D P C C P++
Sbjct: 506 TWFKLNDTLDYECHDGYESN-TGSTTGSIVCGYNGWSDLPICYERECELPKIDVHLVPDR 564
Query: 471 -GYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNM 507
V L+F C+PG +VG S++C G ++
Sbjct: 565 KKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDL 602
Score = 162 bits (410), Expect = 6e-42
Identities = 52/249 (20%), Positives = 87/249 (34%), Gaps = 16/249 (6%)
Query: 217 PANCGSPDRHLNTTFVGTVNT--KLGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQ 274
+C S N +G K G ++Y C + G++ TC WTG PTC+
Sbjct: 968 KTDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTCINSRWTG-RPTCR 1026
Query: 275 YVDCGKLEHIEHGTVTLETTRT-THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQC 333
C +++ + G Y C Y + G+ +C +G + +
Sbjct: 1027 DTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTEPPQCKD 1086
Query: 334 LFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPT 390
C PP I G +T+ S Y C+ + L G+ + C G WS P
Sbjct: 1087 STGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWSE-PPK 1144
Query: 391 CKYVDCGSPANIDNGHYSLLNGTT-----THGSVAEYTCDDDYWLEAGAMRRQVCMRDGK 445
C + S ++N + +L G E+ C Y L + + +
Sbjct: 1145 CLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHT--LRTTCWD 1202
Query: 446 WSGDTPSCE 454
+ P+C
Sbjct: 1203 GKLEYPTCA 1211
Score = 161 bits (409), Expect = 8e-42
Identities = 57/305 (18%), Positives = 98/305 (32%), Gaps = 20/305 (6%)
Query: 213 CQHNPANCGSPDRHLNTTFVGTVNT-KLGSTISYACPEGNMLVGSATRTCKEGFWTGVAP 271
C + CG + + G ++ + C E ++G + TC G WT + P
Sbjct: 666 CIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITCIHGVWTQL-P 724
Query: 272 TCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIG--ETRRVCGDGGKWNGT 329
C +D K + + + + + Y G G+W+
Sbjct: 725 QCVAIDKLKKCKSSNLIIL--EEHLKNKKEFDHNSNIRYRCRGKEGWIHTVCINGRWDPE 782
Query: 330 EPQCLFD--WCAEPPQISGGIVTTSGR--RTGSVATYSCEPGFILFGSNELKCGLGGDWS 385
+ C PPQI T+ R G + C+ +++ E+ C G W
Sbjct: 783 VNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQEGEEITCKDGR-WQ 841
Query: 386 GKAPTCKYVDCGSPANIDNGHYSLLN---GTTTHGSVAEYTCDDDYWLEAGAMRRQVCMR 442
+ + C P I++G + + HG+ YTC+ + + C
Sbjct: 842 SIPLCVEKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRIS-EENETT-CYM 899
Query: 443 DGKWSGDTPSCELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLLVGQASLKCTR 500
S P CE + C P G V + + C G + G A KC
Sbjct: 900 GKWSS--PPQCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCLG 957
Query: 501 QGDWD 505
+
Sbjct: 958 EKWSH 962
Score = 155 bits (393), Expect = 8e-40
Identities = 55/306 (17%), Positives = 91/306 (29%), Gaps = 23/306 (7%)
Query: 217 PANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYV 276
+C SPD + + K Y C G C E W + P+C+
Sbjct: 189 EISCKSPDVINGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESGWRPL-PSCEEK 247
Query: 277 DCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFD 336
C +I +G + + G Y C + W P+C
Sbjct: 248 SCD-NPYIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTGWIPA-PRCTLK 305
Query: 337 WCAEPPQISGGIVTTSGRR------TGSVATYSCEPGFILFGS---NELKCGLGGDWSGK 387
C P GG+ + RR G +Y C+ F + + C G WS
Sbjct: 306 PCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDG-WSPA 364
Query: 388 APTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWS 447
P + ++NG+ G + C Y L V + WS
Sbjct: 365 VPCLRKCYFPY---LENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTT--VTCMENGWS 419
Query: 448 GDTPSCELIT--CPEPEVPKGGYVVG--YDLNVHSTLEFHCEPGHLLVGQASLKCTRQGD 503
TP C + + G++ Y + ++ C+ G++ + R G
Sbjct: 420 -PTPRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSIRCGK 478
Query: 504 WDNMSP 509
+
Sbjct: 479 DGWSAQ 484
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 188 bits (478), Expect = 2e-51
Identities = 61/301 (20%), Positives = 91/301 (30%), Gaps = 27/301 (8%)
Query: 211 WICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGV 269
W +C + + G + Y CP G TRTC+ G W+ +
Sbjct: 3 WSLARPQGSCSLEGVEIKGGSFRLLQE--GQALEYVCPSGFYPYPVQTRTCRSTGSWSTL 60
Query: 270 ---------APTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC 320
C+ + C + E+G + + C++ YTL G R C
Sbjct: 61 KTQDQKTVRKAECRAIHCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTC 120
Query: 321 GDGGKWNGTEPQCL--FDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKC 378
G+W+G C +C+ P G S R TY C G L GS C
Sbjct: 121 QVNGRWSGQTAICDNGAGYCSNPGIPIGTRKVGSQYRLEDSVTYHCSRGLTLRGSQRRTC 180
Query: 379 GLGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWL-------E 431
GG WSG P+C+ + T G AE
Sbjct: 181 QEGGSWSGTEPSCQDSFMYDTPQEVAEAFLSSLTETIEGVDAEDGHGPGEQQKRKIVLDP 240
Query: 432 AGAMRRQVCMRDGKWSGDTPSCEL-ITCPEPEVPKGGYVVGYDLNVH-STLEFHCEPGHL 489
+G+M + DG S C + K Y + + + P
Sbjct: 241 SGSMNI-YLVLDGSGSIGASDFTGAKKCLVNLIEKVA---SYGVKPRYGLVTYATYPKIW 296
Query: 490 L 490
+
Sbjct: 297 V 297
Score = 172 bits (438), Expect = 4e-46
Identities = 52/211 (24%), Positives = 76/211 (36%), Gaps = 20/211 (9%)
Query: 326 WNGTEPQCLFDWCAEP-PQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDW 384
W+ PQ C+ +I GG + G Y C GF + C G W
Sbjct: 3 WSLARPQGS---CSLEGVEIKGGSFRLL--QEGQALEYVCPSGFYPYPVQTRTCRSTGSW 57
Query: 385 SG---------KAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAM 435
S + C+ + C P + +NG Y + + C D Y L A
Sbjct: 58 STLKTQDQKTVRKAECRAIHCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSAN 117
Query: 436 RRQVCMRDGKWSGDTPSCELIT--CPEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQ 493
R C +G+WSG T C+ C P +P G VG + ++ +HC G L G
Sbjct: 118 R--TCQVNGRWSGQTAICDNGAGYCSNPGIPIGTRKVGSQYRLEDSVTYHCSRGLTLRGS 175
Query: 494 ASLKCTRQGDWDNMSPQ-FISFYFPPSETIS 523
C G W P SF + + ++
Sbjct: 176 QRRTCQEGGSWSGTEPSCQDSFMYDTPQEVA 206
Score = 151 bits (383), Expect = 7e-39
Identities = 49/256 (19%), Positives = 71/256 (27%), Gaps = 29/256 (11%)
Query: 266 WTGVAPTCQYVDCGKL-EHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGG 324
W+ P C I+ G+ L G Y C + R C G
Sbjct: 3 WSLARPQGS---CSLEGVEIKGGSFRL----LQEGQALEYVCPSGFYPYPVQTRTCRSTG 55
Query: 325 KWNG---------TEPQCLFDWCAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGS 373
W+ + +C C P G ++ C G+ L GS
Sbjct: 56 SWSTLKTQDQKTVRKAECRAIHCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGS 115
Query: 374 NELKCGLGGDWSGKAPTCK--YVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLE 431
C + G WSG+ C C +P + Y C L
Sbjct: 116 ANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGT--RKVGSQYRLEDSVTYHCSRGLTL- 172
Query: 432 AGAMRRQVCMRDGKWSGDTPSCELI-TCPEPEVPKGGYVVGYDLNVH-STLEFHCEPGHL 489
G+ RR C G WSG PSC+ P+ ++ + E PG
Sbjct: 173 RGSQRR-TCQEGGSWSGTEPSCQDSFMYDTPQEVAEAFLSSLTETIEGVDAEDGHGPGEQ 231
Query: 490 LVGQASLKCTRQGDWD 505
+ G +
Sbjct: 232 QKR--KIVLDPSGSMN 245
>3erb_A Complement C2; C3/C5 convertase, short consensus repeat(SCR), sushi
domain, human complement system, complement second
component C2; 1.80A {Homo sapiens}
Length = 223
Score = 172 bits (438), Expect = 3e-50
Identities = 47/218 (21%), Positives = 72/218 (33%), Gaps = 12/218 (5%)
Query: 219 NCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKEGFWTG-------VAP 271
+C TF + GS ++Y+CP+G ++ G W
Sbjct: 3 SCPQNVNISGGTFTLSHGWAPGSLLTYSCPQGLYPSPASRLCKSSGQWQTPGATRSLSKA 62
Query: 272 TCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEP 331
C+ V C E+G T G + C + + L G R C G W+G
Sbjct: 63 VCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDGFILRGSPVRQCRPNGMWDGETA 122
Query: 332 QC--LFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAP 389
C C P G + T G Y C +L GS+E +C G WSG P
Sbjct: 123 VCDNGAGHCPNPGISLGAVRTGFRFGHGDKVRYRCSSNLVLTGSSERECQGNGVWSGTEP 182
Query: 390 TCKYVDCGS-PANIDNGHYSLLNGTTTHGSVAEYTCDD 426
C+ P ++ + + + G+
Sbjct: 183 ICRQPYSYDFPEDVAPALGT--SFSHMLGATNPTQKTK 218
Score = 160 bits (405), Expect = 2e-45
Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 15/208 (7%)
Query: 338 CAEPPQISGGIVTTS-GRRTGSVATYSCEPGFILFGSNELKCGLGGDWSG-------KAP 389
C + ISGG T S G GS+ TYSC G ++ L C G W
Sbjct: 4 CPQNVNISGGTFTLSHGWAPGSLLTYSCPQGLYPSPASRL-CKSSGQWQTPGATRSLSKA 62
Query: 390 TCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGD 449
CK V C +P + +NG Y+ G+ G + C+D + L +R+ C +G W G+
Sbjct: 63 VCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDGFILRGSPVRQ--CRPNGMWDGE 120
Query: 450 TPSCELIT--CPEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNM 507
T C+ CP P + G G+ + + C +L G + +C G W
Sbjct: 121 TAVCDNGAGHCPNPGISLGAVRTGFRFGHGDKVRYRCSSNLVLTGSSERECQGNGVWSGT 180
Query: 508 SP--QFISFYFPPSETISAVSEAQTLGY 533
P + Y P + A+ + +
Sbjct: 181 EPICRQPYSYDFPEDVAPALGTSFSHML 208
Score = 153 bits (389), Expect = 3e-43
Identities = 52/221 (23%), Positives = 75/221 (33%), Gaps = 18/221 (8%)
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGT------ 329
C + +I GT TL G++ Y+C + +R +C G+W
Sbjct: 2 PSCPQNVNISGGTFTLSHG-WAPGSLLTYSCPQGLYPSPASR-LCKSSGQWQTPGATRSL 59
Query: 330 -EPQCLFDWCAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSNELKCGLGGDWSG 386
+ C C P GI T G ++ CE GFIL GS +C G W G
Sbjct: 60 SKAVCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDGFILRGSPVRQCRPNGMWDG 119
Query: 387 KAPTCKYV--DCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDG 444
+ C C +P + HG Y C + L G+ R C +G
Sbjct: 120 ETAVCDNGAGHCPNPGISLGAVRT--GFRFGHGDKVRYRCSSNLVLT-GSSER-ECQGNG 175
Query: 445 KWSGDTPSCELITCPE-PEVPKGGYVVGYDLNVHSTLEFHC 484
WSG P C + PE + + +T
Sbjct: 176 VWSGTEPICRQPYSYDFPEDVAPALGTSFSHMLGATNPTQK 216
>3sw0_X H factor 1, complement factor H; innate immune response, sushi
domains, cofactor in the inact of C3B, C3B, human
plasma, immune system; 1.80A {Homo sapiens}
Length = 188
Score = 141 bits (357), Expect = 3e-39
Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 15/184 (8%)
Query: 338 CAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYV 394
C PP + + + G Y C + +FG E+ C G
Sbjct: 5 CVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTEPPQCKDSTG 64
Query: 395 DCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSC 453
CG P IDNG + + S EY C + Y LE G +++ R+G+WS P C
Sbjct: 65 KCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLE-GN--KRITCRNGQWSE-PPKC 120
Query: 454 ELITCPEPEVPKGGYVVGYDLNVH-------STLEFHCEPGHLLVGQASLKCTRQGDWDN 506
E+ + + ++EF C+ G+ L ++ T D
Sbjct: 121 LHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKL 180
Query: 507 MSPQ 510
P
Sbjct: 181 EYPT 184
Score = 139 bits (351), Expect = 2e-38
Identities = 39/184 (21%), Positives = 60/184 (32%), Gaps = 13/184 (7%)
Query: 219 NCGSPDRHLNTTFVGTVNT--KLGSTISYACPEGNMLVGSATRTCKEGFWTG-VAPTCQY 275
+C +P N V + G + Y C + G C G WT
Sbjct: 4 SCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTEPPQCKDST 63
Query: 276 VDCGKLEHIEHGTVT-LETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCL 334
CG I++G +T + + Y C Y L G R C + G+W+ P+CL
Sbjct: 64 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRN-GQWSEP-PKCL 121
Query: 335 FDWCAEPPQISGGIVTTSGR-------RTGSVATYSCEPGFILFGSNELKCGLGGDWSGK 387
+ + RTG + C+ G+ L + D +
Sbjct: 122 HPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLE 181
Query: 388 APTC 391
PTC
Sbjct: 182 YPTC 185
Score = 137 bits (346), Expect = 1e-37
Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 13/188 (6%)
Query: 276 VDCGKLEHIEHGTVT-LETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCL 334
C +++ + + ++ G Y C Y + G+ +C +G + +
Sbjct: 3 TSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTEPPQCKDS 62
Query: 335 FDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTC 391
C PP I G +T+ S Y C+ + L G+ + C G WS P C
Sbjct: 63 TGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITC-RNGQWSE-PPKC 120
Query: 392 KYVDCGSPANIDNGHYSLLNGTT-----THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKW 446
+ S ++N + +L G E+ C Y L + + +
Sbjct: 121 LHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHT--LRTTCWDG 178
Query: 447 SGDTPSCE 454
+ P+C
Sbjct: 179 KLEYPTCA 186
Score = 89.2 bits (221), Expect = 9e-21
Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 8/128 (6%)
Query: 213 CQHNPANCGSPDRHLNTTFVGTVNT--KLGSTISYACPEGNMLVGSATRTCKEGFWTGVA 270
C+ + CG P N + S++ Y C L G+ TC+ G W+
Sbjct: 59 CKDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEP- 117
Query: 271 PTCQYVDCGKLEHIEHGTVTLETTRT-----THGAVAIYACHENYTLIGETRRVCGDGGK 325
P C + E +E+ + L T G + C Y L + +
Sbjct: 118 PKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWD 177
Query: 326 WNGTEPQC 333
P C
Sbjct: 178 GKLEYPTC 185
Score = 44.9 bits (106), Expect = 2e-05
Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 456 ITCPEPEVPKGGYVVGYDLNVH---STLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQ 510
+C P + Y+V ++ + + + C + + G + C + +
Sbjct: 3 TSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTEPPQCK 60
Score = 39.9 bits (93), Expect = 8e-04
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVA 270
C + + + L T + ++ G ++ + C G L +
Sbjct: 123 PCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEY 182
Query: 271 PTC 273
PTC
Sbjct: 183 PTC 185
>2uwn_A H factor 1, human complement factor H; alternative splicing,
sucrose octasulphate, AGE-related macular degeneration,
complement alternate pathway; HET: SCR; 2.35A {Homo
sapiens} PDB: 2v8e_A* 2ic4_A 2w80_A 2w81_A 2jgw_A 2jgx_A
Length = 187
Score = 124 bits (313), Expect = 4e-33
Identities = 41/182 (22%), Positives = 59/182 (32%), Gaps = 16/182 (8%)
Query: 283 HIEHGTVTLETTR-----TTHGAVAIYACHENYTLIGE---TRRVCGDGGKWNGTEPQCL 334
I+HG + E R G Y C E++ C G W+ CL
Sbjct: 10 DIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDG-WSP-AVPCL 67
Query: 335 FDWCAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCK 392
C P + G GR+ G +C PG+ L + + WS +
Sbjct: 68 -RKC-YFPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIR 125
Query: 393 YVDCGSPA-NIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTP 451
C + +I+NG S T A+Y C Y G + WS P
Sbjct: 126 VKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSITCGKDGWSA-QP 184
Query: 452 SC 453
+C
Sbjct: 185 TC 186
Score = 108 bits (271), Expect = 2e-27
Identities = 31/182 (17%), Positives = 56/182 (30%), Gaps = 23/182 (12%)
Query: 340 EPPQISGGIVTTSGRRT-------GSVATYSCEPGFILFGS---NELKCGLGGDWSGKAP 389
+ P I G + R G +Y C+ F + + C G WS P
Sbjct: 7 DYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDG-WSPAVP 65
Query: 390 TCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGD 449
+ C P ++NG+ G + C Y L + WS
Sbjct: 66 CLR--KCYFP-YLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTV--TCMENGWSPT 120
Query: 450 TPSCELITCPEPE-VPKGGYVVGYDL--NVHSTLEFHCEPGHLLVGQ---ASLKCTRQGD 503
+ TC + + G++ + ++ C+ G++ S+ C +
Sbjct: 121 PRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSITCG-KDG 179
Query: 504 WD 505
W
Sbjct: 180 WS 181
Score = 107 bits (268), Expect = 5e-27
Identities = 37/164 (22%), Positives = 55/164 (33%), Gaps = 14/164 (8%)
Query: 237 TKLGSTISYACPEGNMLVGSA---TRTCKEGFWTGVAPTCQYVDCGKLEHIEHGTVTLET 293
+G SY C E + C + W+ P + C +E+G
Sbjct: 28 VAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLR--KCYFPY-LENGYNQNHG 84
Query: 294 TRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPP-QISGGIVTTS 352
+ G ACH Y L V W+ T C++ I G ++ S
Sbjct: 85 RKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISES 144
Query: 353 GRR--TGSVATYSCEPGFILFG---SNELKCGLGGDWSGKAPTC 391
A Y C+ G++ S + CG G WS + PTC
Sbjct: 145 QYTYALKEKAKYQCKLGYVTADGETSGSITCGKDG-WSAQ-PTC 186
Score = 76.1 bits (187), Expect = 4e-16
Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 238 KLGSTISYACPEGNMLVGSATR-TCKEGFWTGVAPTCQYVDCGKLE-HIEHGTVTLETTR 295
G +I AC G L + T TC E W+ + C K IE+G ++
Sbjct: 88 VQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYT 147
Query: 296 TTHGAVAIYACHENYTLIGETRR---VCGDGGKWNGTEPQCL 334
A Y C Y CG G W+ P C+
Sbjct: 148 YALKEKAKYQCKLGYVTADGETSGSITCGKDG-WSAQ-PTCI 187
Score = 76.1 bits (187), Expect = 4e-16
Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 11/121 (9%)
Query: 396 CGSPANIDNGHYSLLNGT-----TTHGSVAEYTCDDDYWLEAGAMRRQV-CMRDGKWSGD 449
C P +I +G N G Y CD+ + +G+ + C +DG WS
Sbjct: 6 CDYP-DIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDG-WSPA 63
Query: 450 TPSCELITCPEPEVPKGGYVV-GYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMS 508
P C P + G G +++ C PG+ L + + W
Sbjct: 64 VPCLR--KCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTP 121
Query: 509 P 509
Sbjct: 122 R 122
>1h03_P Complement decay-accelerating factor; immune system protein,
enteroviral receptor, bacterial receptor, ligand for
CD97, complement pathway; 1.7A {Homo sapiens} SCOP:
g.18.1.1 g.18.1.1 PDB: 1h2q_P 1uot_P 1upn_E 1h2p_P
1h04_P 2qzd_A
Length = 125
Score = 116 bits (293), Expect = 4e-31
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 5/122 (4%)
Query: 338 CAEPPQISGGIVTTSGRRT-GSVATYSCEPGFILFGSNELKC---GLGGDWSGKAPTCKY 393
C P +I G + G G+ ++SC G+ LFGS C G WS P C+
Sbjct: 3 CPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECRE 62
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRR-QVCMRDGKWSGDTPS 452
+ C +P IDNG + Y C+ + + V +G+WSG P
Sbjct: 63 IYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPE 122
Query: 453 CE 454
C
Sbjct: 123 CR 124
Score = 110 bits (277), Expect = 5e-29
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 219 NCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQ 274
+C +P N G+TIS++C G L GS + C W+ P C+
Sbjct: 2 SCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECR 61
Query: 275 YVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEP 331
+ C I++G + E + YAC++ +T+IGE C D G+W+G P
Sbjct: 62 EIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPP 121
Query: 332 QC 333
+C
Sbjct: 122 EC 123
Score = 109 bits (275), Expect = 1e-28
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 278 CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCL 334
C I +G + + GA ++C+ Y L G T C G +W+ P+C
Sbjct: 3 CPNPGEIRNGQIDV-PGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECR 61
Query: 335 FDWCAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSNELKC---GLGGDWSGKAP 389
+C PPQI GI+ TY+C GF + G + + C G+WSG P
Sbjct: 62 EIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPP 121
Query: 390 TCK 392
C+
Sbjct: 122 ECR 124
Score = 98.8 bits (246), Expect = 9e-25
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 396 CGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDG---KWSGDTPS 452
C +P I NG + G G+ ++C+ Y L G+ C+ G +WS P
Sbjct: 3 CPNPGEIRNGQIDVPGGIL-FGATISFSCNTGYKLF-GSTSSF-CLISGSSVQWSDPLPE 59
Query: 453 CELITCPEPEVPKGGYVVGY--DLNVHSTLEFHCEPGHLLVGQASLKCT---RQGDWDNM 507
C I CP P G + G ++ + C G ++G+ S+ CT +G+W
Sbjct: 60 CREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP 119
Query: 508 SPQ 510
P+
Sbjct: 120 PPE 122
Score = 48.7 bits (116), Expect = 3e-07
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 457 TCPEPEVPKGGYV-VGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQG---DWDNMSPQ 510
+CP P + G + V + +T+ F C G+ L G S C G W + P+
Sbjct: 2 SCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPE 59
Score = 47.9 bits (114), Expect = 6e-07
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNT-KLGSTISYACPEGNMLVGSATRTC----KEGFW 266
C+ C +P + N G + +++YAC +G ++G + C EG W
Sbjct: 59 ECR--EIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEW 116
Query: 267 TGVAPTCQ 274
+G P C+
Sbjct: 117 SGPPPECR 124
>3gov_A MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_A
Length = 155
Score = 116 bits (292), Expect = 1e-30
Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 15/145 (10%)
Query: 338 CAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSN------ELKCGLGGDWSGKAP 389
C E G + S + SC+ G+ + N +++C G WS K P
Sbjct: 8 CPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIP 67
Query: 390 TCKYVDCGSPANIDNGH--YSLLNGTTTHGSVAEYTCDDDYWL-EAGAMRRQVCMRDGKW 446
TCK VDC +P +++G +S N TT+ S +Y+C + Y+ C G W
Sbjct: 68 TCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVW 127
Query: 447 SGDTPSCELITC----PEPEVPKGG 467
L TC P+ +
Sbjct: 128 MNKVLGRSLPTCLPVCGLPKFSRKL 152
Score = 100 bits (251), Expect = 4e-25
Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 11/132 (8%)
Query: 390 TCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQV----CMRDGK 445
+ +C +G +CD Y + + C++DG
Sbjct: 2 SMTGNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGT 61
Query: 446 WSGDTPSCELITCPEPEVPKGGYVVGYDLN----VHSTLEFHCEPGHLLV---GQASLKC 498
WS P+C+++ C P + G + N S +++ C+ + + C
Sbjct: 62 WSNKIPTCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTC 121
Query: 499 TRQGDWDNMSPQ 510
+ QG W N
Sbjct: 122 SAQGVWMNKVLG 133
Score = 92.0 bits (228), Expect = 5e-22
Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 16/146 (10%)
Query: 220 CGSPDRHLNTTFVGT-VNTKLGSTISYACPEGNMLVGSATRTC-------KEGFWTGVAP 271
C ++ + + +C G ++ K+G W+ P
Sbjct: 8 CPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIP 67
Query: 272 TCQYVDCGKLEHIEHGTVTLETTR--TTHGAVAIYACHENYTLI---GETRRVCGDGGKW 326
TC+ VDC +EHG +T T TT+ + Y+C E Y + C G W
Sbjct: 68 TCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVW 127
Query: 327 NGTEPQCLFDWCAE---PPQISGGIV 349
C P+ S ++
Sbjct: 128 MNKVLGRSLPTCLPVCGLPKFSRKLM 153
>1ly2_A CD21, complement receptor type 2; epstein BARR virus, regulator of
comple activation, short consensus repeat, viral
receptor; HET: NAG; 1.80A {Homo sapiens} SCOP: g.18.1.1
g.18.1.1 PDB: 1w2r_A 1w2s_B 1ghq_B* 3oed_C
Length = 130
Score = 108 bits (271), Expect = 4e-28
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 10/129 (7%)
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDG----GKWNGTEP 331
CG I +G ++ +T G V Y+C + LIGE +C G W+ P
Sbjct: 2 ASCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 332 QC----LFDWCAEPPQISGGIVTTSGRRT-GSVATYSCEPGFILFGSNELKCGLGGDWSG 386
+C + C EP G + S G T++C+ F + G+ + C W
Sbjct: 62 KCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGP 121
Query: 387 -KAPTCKYV 394
+ PTC +
Sbjct: 122 TRLPTCVSI 130
Score = 105 bits (264), Expect = 4e-27
Identities = 34/119 (28%), Positives = 45/119 (37%), Gaps = 7/119 (5%)
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRR--QVCMRDGKWSGDTP 451
CGSP I NG S + G+V Y+C + L DG W P
Sbjct: 2 ASCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 452 SCELI----TCPEPEVPKGGYVVGYDLNVH-STLEFHCEPGHLLVGQASLKCTRQGDWD 505
CE +CPEP VP G + G H ++ F C+ + G S+ C W
Sbjct: 62 KCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWG 120
Score = 96.1 bits (239), Expect = 8e-24
Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 14/130 (10%)
Query: 338 CAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSNELKCGLG----GDWSGKAPTC 391
C PP I G ++ G+V YSC F L G L C G W AP C
Sbjct: 4 CGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPKC 63
Query: 392 KYVD----CGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWS 447
+Y + C P + G+ + HG + C ++ + G C + W
Sbjct: 64 EYFNKYSSCPEP-IVPGGYKIRGSTPYRHGDSVTFACKTNFSMN-GNKSVW-CQANNMWG 120
Query: 448 G-DTPSCELI 456
P+C I
Sbjct: 121 PTRLPTCVSI 130
Score = 90.3 bits (224), Expect = 9e-22
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 12/126 (9%)
Query: 219 NCGSPDRHLNTTFVGTVNT-KLGSTISYACPEGNMLVGSATRTCKE-----GFWTGVAPT 272
+CGSP LN +G+ I Y+C L+G + C G W AP
Sbjct: 3 SCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPK 62
Query: 273 CQYVD----CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNG 328
C+Y + C + + G +T HG +AC N+++ G C W
Sbjct: 63 CEYFNKYSSCPEPI-VPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGP 121
Query: 329 TE-PQC 333
T P C
Sbjct: 122 TRLPTC 127
Score = 46.0 bits (109), Expect = 3e-06
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 212 ICQ--HNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKE-GFWTG 268
C+ + ++C P G+ + G ++++AC + G+ + C+ W
Sbjct: 62 KCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGP 121
Query: 269 V-APTCQYV 276
PTC +
Sbjct: 122 TRLPTCVSI 130
>1gkn_A Complement receptor type 1; module, SCR, structure; NMR {Homo
sapiens} SCOP: g.18.1.1 g.18.1.1
Length = 128
Score = 105 bits (264), Expect = 3e-27
Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 11/126 (8%)
Query: 338 CAEPPQISGGIVTTSGRRT----GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKY 393
C P + T + G+ Y C P + + + C WS CK
Sbjct: 6 CQAPDHFLFAKLKTQTTASDFPIGTSLKYECRPEYYGRPFS-ITCLDNLVWSSPKDVCKR 64
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGK---WSGDT 450
C +P + NG ++ GS Y+C + L G + C+ G WS
Sbjct: 65 KSCKTPPDPVNGMVHVITD-IQVGSRITYSCTTGHRLI-GHSSAE-CILSGNTAHWSTKP 121
Query: 451 PSCELI 456
P C+ I
Sbjct: 122 PICQRI 127
Score = 102 bits (255), Expect = 6e-26
Identities = 33/125 (26%), Positives = 45/125 (36%), Gaps = 7/125 (5%)
Query: 276 VDCGKLEHIEHGTVTLETTRT--THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQC 333
C +H + +TT + G Y C Y + C D W+ + C
Sbjct: 4 AHCQAPDHFLFAKLKTQTTASDFPIGTSLKYECRPEYYGRPFSIT-CLDNLVWSSPKDVC 62
Query: 334 LFDWCAEPPQISGGIVTTSGRRT-GSVATYSCEPGFILFGSNELKC---GLGGDWSGKAP 389
C PP G+V GS TYSC G L G + +C G WS K P
Sbjct: 63 KRKSCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPP 122
Query: 390 TCKYV 394
C+ +
Sbjct: 123 ICQRI 127
Score = 101 bits (253), Expect = 1e-25
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 9/123 (7%)
Query: 394 VDCGSPANIDNGHYSLLNGTT--THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTP 451
C +P + + G+ +Y C +Y+ C+ + WS
Sbjct: 4 AHCQAPDHFLFAKLKTQTTASDFPIGTSLKYECRPEYYGR-PFSIT--CLDNLVWSSPKD 60
Query: 452 SCELITCPEPEVPKGGYV-VGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGD---WDNM 507
C+ +C P P G V V D+ V S + + C GH L+G +S +C G+ W
Sbjct: 61 VCKRKSCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK 120
Query: 508 SPQ 510
P
Sbjct: 121 PPI 123
Score = 99.1 bits (247), Expect = 7e-25
Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 218 ANCGSPDRHLNTTFVGTVNT---KLGSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTC 273
A+C +PD L +G+++ Y C + TC + W+ C
Sbjct: 4 AHCQAPDHFLFAKLKTQTTASDFPIGTSLKYECRPEYYGRPF-SITCLDNLVWSSPKDVC 62
Query: 274 QYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTE 330
+ C +G V + T G+ Y+C + LIG + C G+ W+
Sbjct: 63 KRKSCKTPPDPVNGMVHV-ITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKP 121
Query: 331 PQC 333
P C
Sbjct: 122 PIC 124
Score = 54.8 bits (132), Expect = 3e-09
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWT 267
+C+ +C +P +N + ++GS I+Y+C G+ L+G ++ C W+
Sbjct: 61 VCK--RKSCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWS 118
Query: 268 GVAPTCQYV 276
P CQ +
Sbjct: 119 TKPPICQRI 127
>2a55_A C4B-binding protein; complement, SCR, CCP module, immune system;
NMR {Homo sapiens}
Length = 133
Score = 105 bits (264), Expect = 4e-27
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 13/133 (9%)
Query: 338 CAEPPQISGGIVTTSGR-----RTGSVATYSCEPGFILFGSNE-LKCGLGGDWSGKAPTC 391
C PP +S +TG+ Y+C PG++ S + L C G+W C
Sbjct: 3 CGPPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVYN-TFC 61
Query: 392 KYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGK---WSG 448
Y C P + NG + + GS E++C + ++L G+ + C + WS
Sbjct: 62 IYKRCRHPGELRNGQVEIKTDLS-FGSQIEFSCSEGFFLI-GSTTSR-CEVQDRGVGWSH 118
Query: 449 DTPSCELITCPEP 461
P CE++
Sbjct: 119 PLPQCEILEHHHH 131
Score = 104 bits (262), Expect = 7e-27
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 9/132 (6%)
Query: 276 VDCGKLEHIEHGTVTLET---TRTTHGAVAIYACHENYTLIGETR-RVCGDGGKWNGTEP 331
++CG + T TR G Y C Y T+ C G+W
Sbjct: 1 MNCGPPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVY-NT 59
Query: 332 QCLFDWCAEPPQIS-GGIVTTSGRRTGSVATYSCEPGFILFGSNELKC---GLGGDWSGK 387
C++ C P ++ G + + GS +SC GF L GS +C G WS
Sbjct: 60 FCIYKRCRHPGELRNGQVEIKTDLSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSHP 119
Query: 388 APTCKYVDCGSP 399
P C+ ++
Sbjct: 120 LPQCEILEHHHH 131
Score = 99.6 bits (248), Expect = 5e-25
Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 9/124 (7%)
Query: 394 VDCGSPANIDNG---HYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDT 450
++CG P + +L G+ +YTC Y C DG+W +
Sbjct: 1 MNCGPPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSHSTQTLT-CNSDGEWVYN- 58
Query: 451 PSCELITCPEPEVPK-GGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQG---DWDN 506
C C P + G + DL+ S +EF C G L+G + +C Q W +
Sbjct: 59 TFCIYKRCRHPGELRNGQVEIKTDLSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSH 118
Query: 507 MSPQ 510
PQ
Sbjct: 119 PLPQ 122
Score = 93.0 bits (231), Expect = 1e-22
Identities = 34/133 (25%), Positives = 47/133 (35%), Gaps = 11/133 (8%)
Query: 219 NCGSPDRHLNTTFVGTV----NTKLGSTISYACPEG-NMLVGSATRTCKE-GFWTGVAPT 272
NCG P + K G+T+ Y C G + T TC G W
Sbjct: 2 NCGPPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVY-NTF 60
Query: 273 CQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGT 329
C Y C + +G V + T + G+ ++C E + LIG T C G W+
Sbjct: 61 CIYKRCRHPGELRNGQVEI-KTDLSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSHP 119
Query: 330 EPQCLFDWCAEPP 342
PQC
Sbjct: 120 LPQCEILEHHHHH 132
Score = 62.2 bits (151), Expect = 7e-12
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWT 267
C C P N + GS I ++C EG L+GS T C + W+
Sbjct: 60 FCI--YKRCRHPGELRNGQVEIKTDLSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWS 117
Query: 268 GVAPTCQYVDCGKLEH 283
P C+ ++ H
Sbjct: 118 HPLPQCEILEHHHHHH 133
>1gkg_A Complement receptor type 1; module, SCR, structure, sushi; NMR
{Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1ppq_A
Length = 136
Score = 105 bits (263), Expect = 6e-27
Identities = 39/135 (28%), Positives = 52/135 (38%), Gaps = 17/135 (12%)
Query: 273 CQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGT 329
+ C +G V + T G+ Y+C + LIG + C G+ W+
Sbjct: 2 AEAKSCKTPPDPVNGMVHV-ITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK 60
Query: 330 EPQCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPG------FILFGSNELKC-- 378
P C C PP I+ G ++ R GSV TY C G F L G + C
Sbjct: 61 PPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTS 120
Query: 379 --GLGGDWSGKAPTC 391
G WSG AP C
Sbjct: 121 NDDQVGIWSGPAPQC 135
Score = 102 bits (255), Expect = 7e-26
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 214 QHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGV 269
+ +C +P +N + ++GS I+Y+C G+ L+G ++ C W+
Sbjct: 1 EAEAKSCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK 60
Query: 270 APTCQYVDCGKLEHIEHGTVT-LETTRTTHGAVAIYACHE------NYTLIGETRRVC-- 320
P CQ + CG I +G +G+V Y C+ + L+GE C
Sbjct: 61 PPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTS 120
Query: 321 --GDGGKWNGTEPQCL 334
G W+G PQC+
Sbjct: 121 NDDQVGIWSGPAPQCI 136
Score = 102 bits (255), Expect = 7e-26
Identities = 41/136 (30%), Positives = 51/136 (37%), Gaps = 15/136 (11%)
Query: 332 QCLFDWCAEPPQISGGIVTTSGRRT-GSVATYSCEPGFILFGSNELKC---GLGGDWSGK 387
+ C PP G+V GS TYSC G L G + +C G WS K
Sbjct: 1 EAEAKSCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK 60
Query: 388 APTCKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEA-----GAMRRQVCM 441
P C+ + CG P I NG + N +GSV Y C+ G C
Sbjct: 61 PPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSI-YCT 119
Query: 442 RD----GKWSGDTPSC 453
+ G WSG P C
Sbjct: 120 SNDDQVGIWSGPAPQC 135
Score = 92.7 bits (230), Expect = 1e-22
Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 15/134 (11%)
Query: 391 CKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRR-QVCMRDGKWSGD 449
+ C +P + NG ++ GS Y+C + L + + WS
Sbjct: 2 AEAKSCKTPPDPVNGMVHVITDIQ-VGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK 60
Query: 450 TPSCELITCPEPEVPKGGYVVGYDLN---VHSTLEFHCEPGHL------LVGQASLKCT- 499
P C+ I C P G + + S + + C G LVG+ S+ CT
Sbjct: 61 PPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTS 120
Query: 500 ---RQGDWDNMSPQ 510
+ G W +PQ
Sbjct: 121 NDDQVGIWSGPAPQ 134
>2h2t_B Low affinity immunoglobulin epsilon FC receptor ( IGE receptor)
(FC-epsilon-RII)...; C-type lectin, calcium-bound,
lectin domain; 1.30A {Homo sapiens} PDB: 2h2r_A 1t8c_A
1t8d_A
Length = 175
Score = 102 bits (255), Expect = 2e-25
Identities = 41/166 (24%), Positives = 58/166 (34%), Gaps = 25/166 (15%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
+F R CY F + AR C G LV H FL R
Sbjct: 22 INFQRKCYYFGKGT-KQWVHARYACDDMEGQLVSIHSPE--EQDFL-------TKRASHT 71
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGC 204
WIG + + + WVDG V +W +P + + ++CV++ G WND C
Sbjct: 72 GSWIGLR-NLD-LKGEFIWVDGSHVDYSNWAPGEPTSRSQSEDCVMMRG--SGRWNDAFC 127
Query: 205 KLDYLHWICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEG 250
W+C A C P + +G S P+G
Sbjct: 128 DRKLGAWVCDR-LATCTPPASEGSAESMG--------PDSRPDPDG 164
>2qy0_A Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
Length = 159
Score = 101 bits (252), Expect = 3e-25
Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 22/153 (14%)
Query: 338 CAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFG------SNELKCGLGGDWSGKA 388
C +P + + + + +C+ G+ L S C G W
Sbjct: 5 CPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAM 64
Query: 389 PTCKYVDCGSPANIDNGH--YSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQ-------V 439
P CK DCG P N+ NG Y+ G T+ + +Y C + Y+ +
Sbjct: 65 PRCKIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYT 124
Query: 440 CMRDGKWSGDTPSCELITC----PEPEVPKGGY 468
C G W + ++ C +P P
Sbjct: 125 CTAQGIWKNEQKGEKIPRCLPVCGKPVNPVEQR 157
Score = 85.6 bits (211), Expect = 1e-19
Identities = 30/156 (19%), Positives = 44/156 (28%), Gaps = 26/156 (16%)
Query: 276 VDCGKLEHIEHGTVTLETTRT-THGAVAIYACHENYTLIGETR------RVCGDGGKWNG 328
C + + ++ T+ I C + Y LI + VC D G W+
Sbjct: 3 QACPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHR 62
Query: 329 TEPQCLFDWCAEPPQISGGIVTTSGRRT----GSVATYSCEPGFILF---------GSNE 375
P+C C +P + G + + Y C +
Sbjct: 63 AMPRCKIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGV 122
Query: 376 LKCGLGGDWSG-----KAPTCKYVDCGSPANIDNGH 406
C G W K P C V CG P N
Sbjct: 123 YTCTAQGIWKNEQKGEKIPRCLPV-CGKPVNPVEQR 157
Score = 79.0 bits (194), Expect = 2e-17
Identities = 34/156 (21%), Positives = 51/156 (32%), Gaps = 26/156 (16%)
Query: 217 PANCGSPDRHLNTTFVGTVNTK--LGSTISYACPEGNMLVG------SATRTCKE-GFWT 267
C P T + + + C +G L+ S T C++ G W
Sbjct: 2 TQACPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWH 61
Query: 268 GVAPTCQYVDCGKLEHIEHGTVTLETTR--TTHGAVAIYACHENY---------TLIGET 316
P C+ DCG+ ++ +G TT T+ A Y CHE Y +
Sbjct: 62 RAMPRCKIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQG 121
Query: 317 RRVCGDGGKWNGTE-----PQCLFDWCAEPPQISGG 347
C G W + P+CL C +P
Sbjct: 122 VYTCTAQGIWKNEQKGEKIPRCLPV-CGKPVNPVEQ 156
Score = 76.4 bits (187), Expect = 2e-16
Identities = 27/135 (20%), Positives = 36/135 (26%), Gaps = 18/135 (13%)
Query: 394 VDCGSPANIDNG-HYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQ----VCMRDGKWSG 448
C P +D L TC Y L G VC DG W
Sbjct: 3 QACPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHR 62
Query: 449 DTPSCELITCPEPEVPKGGYVVGYDLNVH----STLEFHCEPG---------HLLVGQAS 495
P C++ C +P G + ++++C Q
Sbjct: 63 AMPRCKIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGV 122
Query: 496 LKCTRQGDWDNMSPQ 510
CT QG W N
Sbjct: 123 YTCTAQGIWKNEQKG 137
Score = 44.8 bits (105), Expect = 1e-05
Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 9/76 (11%)
Query: 456 ITCPEPEVPKGGYVVG---YDLNVHSTLEFHCEPGHLLVGQ------ASLKCTRQGDWDN 506
CP+P+ ++ C+ G+ L+ + C G W
Sbjct: 3 QACPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHR 62
Query: 507 MSPQFISFYFPPSETI 522
P+ +
Sbjct: 63 AMPRCKIKDCGQPRNL 78
>3r62_A H factor 1, complement factor H; immunity, repeating sushi domain,
regulator of C activation, C3D, immune system; 1.52A
{Homo sapiens} PDB: 2bzm_A 3oxu_D 3rj3_D 2g7i_A 3kxv_A
3kzj_A 2xqw_C
Length = 129
Score = 97.4 bits (242), Expect = 3e-24
Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 10/127 (7%)
Query: 273 CQYVDCGKLEHIEHGTVTLETTRT-THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEP 331
++ CG I++G +T + Y C Y L G R C +G +W+ P
Sbjct: 2 AEFGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNG-QWSEP-P 59
Query: 332 QCLFDWCAEPPQISGGIVTTSGRRT-------GSVATYSCEPGFILFGSNELKCGLGGDW 384
+CL + + R G + C+ G+ L + D
Sbjct: 60 KCLHPCVISREIMENYNIALRWRAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDG 119
Query: 385 SGKAPTC 391
+ PTC
Sbjct: 120 KLEYPTC 126
Score = 90.8 bits (225), Expect = 6e-22
Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 10/127 (7%)
Query: 391 CKYVDCGSPANIDNGHYSLLNGTT-THGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGD 449
++ CG P IDNG + + S EY C + Y LE +++ R+G+WS
Sbjct: 2 AEFGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEG---NKRITCRNGQWSEP 58
Query: 450 TPSCELITCPEPEVPKGGYVVGYDLNVH------STLEFHCEPGHLLVGQASLKCTRQGD 503
+ + + ++EF C+ G+ L ++ T D
Sbjct: 59 PKCLHPCVISREIMENYNIALRWRAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWD 118
Query: 504 WDNMSPQ 510
P
Sbjct: 119 GKLEYPT 125
Score = 86.2 bits (213), Expect = 3e-20
Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 12/131 (9%)
Query: 332 QCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSNELKCGLGGDWSGKA 388
+ F C PP I G +T+ S Y C+ + L G+ + C G WS
Sbjct: 1 EAEFGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITC-RNGQWSEP- 58
Query: 389 PTCKYVDCGSPANIDNGHYSLLNGTT-----THGSVAEYTCDDDYWLEAGAMRRQVCMRD 443
P C + S ++N + +L G E+ C Y L + + +
Sbjct: 59 PKCLHPCVISREIMENYNIALRWRAKQKLYSRTGESVEFVCKRGYRLSSRSHT--LRTTC 116
Query: 444 GKWSGDTPSCE 454
+ P+C
Sbjct: 117 WDGKLEYPTCA 127
Score = 82.0 bits (202), Expect = 8e-19
Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 10/128 (7%)
Query: 213 CQHNPANCGSPDRHLNTTFVGTVNTKL--GSTISYACPEGNMLVGSATRTCKEGFWTGVA 270
+ CG P N + S++ Y C L G+ TC+ G W+
Sbjct: 2 AE--FGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSE-P 58
Query: 271 PTCQYVDCGKLEHIEHGTVTLETTRT-----THGAVAIYACHENYTLIGETRRVCGDGGK 325
P C + E +E+ + L G + C Y L + +
Sbjct: 59 PKCLHPCVISREIMENYNIALRWRAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWD 118
Query: 326 WNGTEPQC 333
P C
Sbjct: 119 GKLEYPTC 126
Score = 38.1 bits (88), Expect = 0.001
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVA 270
C + + + L + ++ G ++ + C G L +
Sbjct: 64 PCVISREIMENYNIALRWRAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEY 123
Query: 271 PTC 273
PTC
Sbjct: 124 PTC 126
>1egg_A Macrophage mannose receptor; C-type lectin, sugar binding protein;
2.30A {Homo sapiens} SCOP: d.169.1.1 PDB: 1egi_A
Length = 147
Score = 97.1 bits (242), Expect = 7e-24
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 12/142 (8%)
Query: 88 SFDRNCYEF---NIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
S C++ + ++ ++R C+A GGDL + + + K
Sbjct: 13 SRTSLCFKLYAKGKHEKKTWFESRDFCRALGGDLASINNKE--EQQTIWRLITASGSYHK 70
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
W+G + + W DG V+ +W +PNNY + C L G WND+
Sbjct: 71 L--FWLGLT-YGS-PSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDI 126
Query: 203 GCKLDYLHWICQHNPANCGSPD 224
C+ +WICQ PD
Sbjct: 127 NCE-HLNNWICQIQKGQTPKPD 147
>2py2_A Antifreeze protein type II; type II antifreeze protein; 1.70A
{Clupea harengus}
Length = 136
Score = 95.9 bits (239), Expect = 1e-23
Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 14/136 (10%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
F+ C+ FN + +ADA+ C G +L H +TF+
Sbjct: 9 KMFNGRCFLFNPLQ-LHWADAQESCMKEGANLASIHSLE--ESTFVKELTSADLIP---- 61
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGC 204
WIG D + W W+D + W QP+ E C+ ++ G G WND C
Sbjct: 62 -SWIGGT-DCQ-VSTRWFWMDSTSMDYADWCAAQPDTTLTE-CCIQMNVGIGKCWNDTPC 117
Query: 205 KLDYLHWICQHNPANC 220
IC +
Sbjct: 118 T-HLHSSICAKPLKHH 132
>3c22_A C-type lectin domain family 4 member K; coiled coil, glycoprotein,
membrane, signal-anchor, transmembrane, immune system,
sugar binding protein; 1.50A {Homo sapiens} PDB: 3p5g_A*
3p5d_A* 3p5f_A* 3p5e_A* 3p5h_A* 3p5i_A* 3p7g_A* 3p7f_A*
3p7h_A* 3bc7_A* 3bbs_A* 3bc6_A*
Length = 156
Score = 96.0 bits (239), Expect = 2e-23
Identities = 30/141 (21%), Positives = 42/141 (29%), Gaps = 19/141 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
F N Y F++ ++ A C + L FL L
Sbjct: 28 KYFKGNFYYFSLIP-KTWYSAEQFCVSRNSHLTSVTSES--EQEFL-------YKTAGGL 77
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPS----WGKDQPNNYNGEQNCVVLDGGRGWLWN 200
+ WIG G W WVD K W +PNN ++C + WN
Sbjct: 78 IYWIGLT-KAG-MEGDWSWVDDTPFNKVQSARFWIPGEPNNAGNNEHCGNIKAPSLQAWN 135
Query: 201 DVGCKLDYLHWICQHNPANCG 221
D C +IC+
Sbjct: 136 DAPCD-KTFLFICKRPYVPSE 155
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and
CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Length = 182
Score = 96.4 bits (240), Expect = 2e-23
Identities = 30/141 (21%), Positives = 42/141 (29%), Gaps = 19/141 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
F N Y F++ ++ A C + L FL L
Sbjct: 54 KYFKGNFYYFSLIP-KTWYSAEQFCVSRNSHLTSVTSES--EQEFL-------YKTAGGL 103
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPS----WGKDQPNNYNGEQNCVVLDGGRGWLWN 200
+ WIG G W WVD K W +PNN ++C + WN
Sbjct: 104 IYWIGLT-KAG-MEGDWSWVDDTPFNKVQSARFWIPGEPNNAGNNEHCGNIKAPSLQAWN 161
Query: 201 DVGCKLDYLHWICQHNPANCG 221
D C +IC+
Sbjct: 162 DAPCD-KTFLFICKRPYVPSE 181
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold,
antibody, immune system; NMR {Homo sapiens}
Length = 376
Score = 100 bits (248), Expect = 6e-23
Identities = 49/289 (16%), Positives = 83/289 (28%), Gaps = 41/289 (14%)
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC----GDGGKWNGTEP 331
+ CG I +G ++ +T G V Y+C + LIGE +C G W+ P
Sbjct: 2 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 332 QCL----FDWCAEPPQISGGIVTTSG-RRTGSVATYSCEPGFILFGSNELKCGLGGDWSG 386
+C + C EP G + S R G T++C+ F + G+ + C W
Sbjct: 62 KCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGP 121
Query: 387 -KAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMR--- 442
+ PTC V + G L + + + + +
Sbjct: 122 TRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLT 181
Query: 443 ----------------------DGKWSGDTPSCELITCPEPEVPKGGYVVGYDLNV---- 476
+ D T P E + +L +
Sbjct: 182 ITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQD 241
Query: 477 -HSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQFISFYFPPSETISA 524
+ EF C K + + PP E ++
Sbjct: 242 WLNGKEFKCRVNSAAFPAPIEKTISKTKG-RPKAPQLYTIPPPKEQMAK 289
Score = 43.8 bits (102), Expect = 1e-04
Identities = 27/190 (14%), Positives = 49/190 (25%), Gaps = 7/190 (3%)
Query: 220 CGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKEG--FWTGVAPTCQYVD 277
C P G+ + G ++++AC + G+ + C+ + PTC V
Sbjct: 72 CPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVF 131
Query: 278 CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGET----RRVCGDGGKWNGTEPQC 333
+ G L + +
Sbjct: 132 PLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTCV 191
Query: 334 LFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDW-SGKAPTCK 392
+ D + P++ + E F S + DW +GK C+
Sbjct: 192 VVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCR 251
Query: 393 YVDCGSPANI 402
PA I
Sbjct: 252 VNSAAFPAPI 261
>2afp_A Protein (SEA raven type II antifreeze protein); recombinant SEA
raven protein, solution backbone fold, C- type lectin;
NMR {Hemitripterus americanus} SCOP: d.169.1.1
Length = 129
Score = 93.2 bits (232), Expect = 8e-23
Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 17/130 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
C + ++A A + C GG L H ++F+ L
Sbjct: 12 QPLGDRCIYYETTA-MTWALAETNCMKLGGHLASIHSQE--EHSFIQ--------TLNAG 60
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGC 204
+VWIG A W W DG + SW +P++ C+ + W+D+ C
Sbjct: 61 VVWIGGS-ACL-QAGAWTWSDGTPMNFRSWCSTKPDDVLAA-CCMQMTAAADQCWDDLPC 117
Query: 205 KLDYLHWICQ 214
+C
Sbjct: 118 P-ASHKSVCA 126
>2vuv_A Codakine; sugar-binding protein, C-type, lectin, mannose,
invertebrate; HET: CIT; 1.3A {Codakia orbicularis} PDB:
2vuz_A*
Length = 129
Score = 92.4 bits (230), Expect = 1e-22
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
T F CY + K AS+A A+S CQA GG L N L+ + + +
Sbjct: 7 TQFLDLCYIYQSAK-ASWASAQSSCQALGGILAEPDTAC--ENEVLI-HMCKENGDAGSF 62
Query: 145 LVWIGAQKDPGITARTWKWVD-GEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVG 203
W+G QK G W+W G WG ++PNN G ++C+ + WND+
Sbjct: 63 GPWLGGQKVGG----AWQWSSSGAAFDYLRWGPNEPNNSGGNEDCLHYNWLS---WNDLR 115
Query: 204 CKLDYLHWICQ 214
C ++CQ
Sbjct: 116 CHYQA-SYLCQ 125
>1byf_A TC14, protein (polyandrocarpa lectin); C-type lectin,
galactose-specific, sugar binding protein; 2.00A
{Polyandrocarpa misakiensis} SCOP: d.169.1.1 PDB:
1tlg_A*
Length = 125
Score = 92.1 bits (229), Expect = 2e-22
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Query: 93 CYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQK 152
F+ + ++ADA + CQ+ G LV + ++ ++ + + K W+GA
Sbjct: 4 EILFSDET-MNYADAGTYCQSRGMALV--SSAMRDSTMVKAILAFTEV-KGHDYWVGAD- 58
Query: 153 DPGITARTWKWVDGEVVTKP--SWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLH 210
+ A + W DG + W ++P+N Q CV + L +DVGC
Sbjct: 59 NLQDGAYNFLWNDGVSLPTDSDLWSPNEPSNPQSWQLCVQIWSKYN-LLDDVGCG-GARR 116
Query: 211 WICQHNPAN 219
IC+ +
Sbjct: 117 VICEKELDD 125
>2zib_A Type II antifreeze protein; thermal hysteresis, lectin; 1.34A
{Brachyopsis rostratus}
Length = 133
Score = 92.4 bits (230), Expect = 2e-22
Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 17/130 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
T + C+ ++ A + C GG L H ++ +
Sbjct: 15 TLHGQRCFYSEATA-MTWDLAEANCVNKGGHLASIHSLE--EQLYIK--------DIVAG 63
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGC 204
+VWIG A W W DG V +W +PN+ + C+ + W+D+ C
Sbjct: 64 IVWIGGS-ACK-VAGAWSWTDGTPVDYRTWCPTKPNDILSD-CCMQMTAAVDKCWDDLPC 120
Query: 205 KLDYLHWICQ 214
IC
Sbjct: 121 P-ASHASICA 129
>2ls8_A C-type lectin domain family 4 member D; structural genomics, NEW
YORK structural genomics research consortium, nysgrc,
PSI-biology, immune system; NMR {Homo sapiens}
Length = 156
Score = 91.7 bits (228), Expect = 6e-22
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 18/146 (12%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
+F NCY D ++A++ C G L+ F++ L+RR
Sbjct: 8 RAFQSNCYFPLTDN-KTWAESERNCSGMGAHLMTISTEA--EQNFIIQFLDRRLS----- 59
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKP--SWGKDQPNNYNGEQNCVVL-DGGRGWLWND 201
++G + D W+WVD W K++P+N GE NCVVL W WND
Sbjct: 60 -YFLGLR-DEN-AKGQWRWVDQTPFNPRRVFWHKNEPDNSQGE-NCVVLVYNQDKWAWND 115
Query: 202 VGCKLDYLHWICQHNPANCGSPDRHL 227
V C IC+ + + +
Sbjct: 116 VPCN-FEASRICKIPGTTLNAENLYF 140
>2xr6_A CD209 antigen; sugar binding protein, carbohydrate binding,
mannose; HET: MAN 07B; 1.35A {Homo sapiens} PDB: 1sl4_A*
2it6_A* 1k9i_A* 2xr5_A* 1sl5_A* 2it5_A* 1xph_A 1k9j_A*
Length = 170
Score = 90.3 bits (224), Expect = 3e-21
Identities = 44/179 (24%), Positives = 65/179 (36%), Gaps = 26/179 (14%)
Query: 56 GSLSLCEVEIFTTDEFSTDRCASEKAASAEITSFDRNCYEFNIDKGASFADARSKCQASG 115
S S + E E + C E T F NCY + + ++ D+ + C+ G
Sbjct: 2 ASWSHPQFEKIEGRERLSHPCPWE------WTFFQGNCYFMSNSQ-RNWHDSITACKEVG 54
Query: 116 GDLV--HGFRGITNTFLLGELERRKDRLKTLLVWIGAQKDPGITARTWKWVDGEVVTKP- 172
LV FL + R W+G D TW+WVDG +
Sbjct: 55 AQLVVIKSAE--EQNFLQLQSSRSNRF-----TWMGLS-DLN-QEGTWQWVDGSPLLPSF 105
Query: 173 --SWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHNPANCGSPDRHLNT 229
W + +PNN E +C G WND C L WIC+ + A+ + +
Sbjct: 106 KQYWNRGEPNNVGEE-DCAEFSGNG---WNDDKCNLAK-FWICKKSAASSSRDEEQFLS 159
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin,
C-type lectin, alpha-helical coiled coil, carbohydrate
recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP:
d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A*
3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A*
2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A*
1b08_A 3g84_A* ...
Length = 177
Score = 89.8 bits (223), Expect = 4e-21
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 15/130 (11%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
S ++ F +A+ C +GG L N L + + +
Sbjct: 60 QSVGEKIFKTAGFV-KPFTEAQLLCTQAGGQLASPRSAA--ENAALQQLVVAKNEA---- 112
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGC 204
++ D T + + GE + +W +PN+ G ++CV + WND C
Sbjct: 113 -AFLSMT-DSK-TEGKFTYPTGESLVYSNWAPGEPNDDGGSEDCVEIFT--NGKWNDRAC 167
Query: 205 KLDYLHWICQ 214
+ +C+
Sbjct: 168 G-EKRLVVCE 176
>1tdq_B Aggrecan core protein; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: d.169.1.1
Length = 130
Score = 88.1 bits (219), Expect = 5e-21
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 17/131 (12%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
T F +CY D+ ++ DA +C+ L F+ +
Sbjct: 12 TKFQGHCYRHFPDR-ETWVDAERRCREQQSHLSSIVTPE--EQEFVN--------KNAQD 60
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNN-YNGEQNCVVLDGGRGWLWNDVG 203
WIG D ++W DG + W +QP+N + ++CVV+ WNDV
Sbjct: 61 YQWIGLN-DRT-IEGDFRWSDGHSLQFEKWRPNQPDNFFATGEDCVVMIWHERGEWNDVP 118
Query: 204 CKLDYLHWICQ 214
C L + C+
Sbjct: 119 CN-YQLPFTCK 128
>2ox9_A Collectin placenta 1; C-type lectin, sugar binding protein; HET:
GAL NAG FUC; 1.95A {Mus musculus} PDB: 2ox8_A
Length = 140
Score = 87.8 bits (218), Expect = 9e-21
Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
+F CY F+++K F DA+ C+ LV + ++ R+
Sbjct: 10 KNFTDKCYYFSLEK-EIFEDAKLFCEDKSSHLVFINSRE--EQQWIKKHTVGRES----- 61
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYN----GEQNCVVLDGGRGWLWN 200
WIG D WKW+DG V +W QP+N+ ++C L WN
Sbjct: 62 -HWIGLT-DSE-QESEWKWLDGSPVDYKNWKAGQPDNWGSGHGPGEDCAGLI--YAGQWN 116
Query: 201 DVGCKLDYLHWICQHNPANCGSP 223
D C ++IC+ S
Sbjct: 117 DFQCDEIN-NFICEKEREAVPSS 138
>1wmz_A Lectin CEL-I, N-acetyl-D-galactosamine-specific C-type; C-type
lectin, N-acetylgalactosamine, invertebrate, sugar
binding protein; HET: NGA A2G; 1.70A {Cucumaria
echinata} SCOP: d.169.1.1 PDB: 1wmy_A*
Length = 140
Score = 87.9 bits (218), Expect = 9e-21
Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 17/137 (12%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASG-------GDLV--HGFRGITNTFLLGELERR 137
+ +CY F ++ +A +C + DLV H ++
Sbjct: 8 EAEGDHCYRFFNTL-TTWENAHHECVSYSCSTLNVRSDLVSVHSAA--EQAYVFNYWRGI 64
Query: 138 KDRLKTLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGW 197
+ +WIG D + W DG V W QP+N+N ++ G
Sbjct: 65 DSQAGQ--LWIGLY-DKY-NEGDFIWTDGSKVGYTKWAGGQPDNWNNAEDYGQFRHTEGG 120
Query: 198 LWNDVGCKLDYLHWICQ 214
WND ++C+
Sbjct: 121 AWNDNSAAAQA-KYMCK 136
>1tn3_A Tetranectin; plasminogen binding, kringle 4, C-type lectin,
carbohydrate recognition domain; 2.00A {Homo sapiens}
SCOP: d.169.1.1 PDB: 1rjh_A 3l9j_C
Length = 137
Score = 87.4 bits (217), Expect = 1e-20
Identities = 35/131 (26%), Positives = 49/131 (37%), Gaps = 10/131 (7%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
T C+ +F +A C + GG L G N L L + +
Sbjct: 10 TKVHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAE--I 66
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSWGKD---QPNNYNGEQNCVVLDGGRGWLWNDVG 203
W+G D TW + G + +W + QP+ E NC VL G W D
Sbjct: 67 WLGLN-DMA-AEGTWVDMTGARIAYKNWETEITAQPDGGKTE-NCAVLSGAANGKWFDKR 123
Query: 204 CKLDYLHWICQ 214
C+ D L +ICQ
Sbjct: 124 CR-DQLPYICQ 133
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP:
d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A*
1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1*
2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1*
1fif_A 1fih_A*
Length = 149
Score = 87.8 bits (218), Expect = 1e-20
Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 22/132 (16%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGI----TNTFLLGELERRKDRLK 142
+ + N ++ F+ ++ C G + N + +
Sbjct: 33 KKSGKKFFVTNHER-MPFSKVKALCSELRGTVAI----PRNAEENKAIQEVAKTS----- 82
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
++G D T + +V G +T +W KD+PN++ ++CV + LWND+
Sbjct: 83 ---AFLGIT-DEV-TEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTI--VDNGLWNDI 135
Query: 203 GCKLDYLHWICQ 214
C+ +C+
Sbjct: 136 SCQ-ASHTAVCE 146
>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus,
virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
Length = 175
Score = 88.7 bits (220), Expect = 1e-20
Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 20/144 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
T F NCY + + ++ D+ + C+ G LV FL + R
Sbjct: 32 TFFQGNCYFMSNSQ-RNWHDSITACKEVGAQLVVIKSAE--EQNFLQLQSSRSNRF---- 84
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKP---SWGKDQPNNYNGEQNCVVLDGGRGWLWND 201
W+G D TW+WVDG + W + +PNN E +C G WND
Sbjct: 85 -TWMGLS-DLN-QEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEE-DCAEFSGNG---WND 137
Query: 202 VGCKLDYLHWICQHNPANCGSPDR 225
C L WIC+ + A+C +
Sbjct: 138 DKCNLAK-FWICKKSAASCSRDEE 160
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 88.3 bits (219), Expect = 1e-20
Identities = 36/190 (18%), Positives = 57/190 (30%), Gaps = 41/190 (21%)
Query: 93 CYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQK 152
Y + + ++ +A + CQ LV +L L WIG +K
Sbjct: 2 SYNTSTEA-MTYDEASAYCQQRYTHLVAIQNKEEIEYLNSILSYSPSY-----YWIGIRK 55
Query: 153 DPGITARTWKWVDG---EVVTKPSWGKDQPNNYNGEQNCVVL---DGGRGWLWNDVGCKL 206
W WV +W +PNN +++CV + +WND C
Sbjct: 56 ----VNNVWVWVGTQKPLTEEAKNWAPGEPNNRQKDEDCVEIYIKREKDVGMWNDERCSK 111
Query: 207 DYLHWICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKEGFW 266
+C S H C E + + T C GF
Sbjct: 112 KK-LALCYTAACTNTSCSGHGE------------------CVET---INNYTCKCDPGF- 148
Query: 267 TGVAPTCQYV 276
+G C+ +
Sbjct: 149 SG--LKCEQI 156
>1jzn_A Galactose-specific lectin; C-type lectin, protein-disaccharide
complex, sugar binding P; HET: BGC GAL; 2.20A {Crotalus
atrox} SCOP: d.169.1.1 PDB: 1muq_A*
Length = 135
Score = 87.5 bits (217), Expect = 1e-20
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQ--ASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
+ CY+ ++ ++ DA C+ G L H + + + +
Sbjct: 8 LPMNGLCYKI-FNQLKTWEDAEMFCRKYKPGCHLASFHRYG--ESLEIAEYI--SDYHKG 62
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WND 201
VWIG + D +W+W D +W K+QP++Y ++ CV L G+ WND
Sbjct: 63 QENVWIGLR-DKK-KDFSWEWTDRSCTDYLTWDKNQPDHYQNKEFCVELVSLTGYRLWND 120
Query: 202 VGCKLDYLHWICQ 214
C+ ++CQ
Sbjct: 121 QVCESKD-AFLCQ 132
>1hup_A Mannose-binding protein; alpha-helical coiled-coil, C-type lectin;
2.50A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Length = 141
Score = 87.4 bits (217), Expect = 1e-20
Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 22/132 (16%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
+ N + +F ++ C + N + ++
Sbjct: 25 KQVGNKFFLTNGEI-MTFEKVKALCVKFQASVATPRNAA--ENGAIQNLIKEE------- 74
Query: 145 LVWIGA--QKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
++G +K G + + G +T +W + +PNN +++CV+L + WNDV
Sbjct: 75 -AFLGITDEKTEG----QFVDLTGNRLTYTNWNEGEPNNAGSDEDCVLLL--KNGQWNDV 127
Query: 203 GCKLDYLHWICQ 214
C +C+
Sbjct: 128 PCS-TSHLAVCE 138
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled
coil, C-type lectin, carbohydrate recognition domain;
2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Length = 182
Score = 88.3 bits (219), Expect = 2e-20
Identities = 35/131 (26%), Positives = 49/131 (37%), Gaps = 10/131 (7%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
T C+ +F +A C + GG L G N L L + +
Sbjct: 55 TKVHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAE--I 111
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSWGKD---QPNNYNGEQNCVVLDGGRGWLWNDVG 203
W+G D TW + G + +W + QP+ E NC VL G W D
Sbjct: 112 WLGLN-DMA-AEGTWVDMTGARIAYKNWETEITAQPDGGKTE-NCAVLSGAANGKWFDKR 168
Query: 204 CKLDYLHWICQ 214
C+ D L +ICQ
Sbjct: 169 CR-DQLPYICQ 178
>3alu_A Lectin CEL-IV, C-type; C-type lectin, raffinose, sugar binding
protein; HET: RAF; 1.65A {Cucumaria echinata} PDB:
3als_A* 3alt_A*
Length = 157
Score = 87.2 bits (216), Expect = 2e-20
Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 19/143 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGI-----------TNTFLLGELE 135
T F+ C+ + +F +A + C+ G G + FL ++
Sbjct: 10 TGFNGKCFRLFHNH-LNFDNAENACRQFGLASCSGDELATGHLASIHSAESQAFLTELVK 68
Query: 136 RRKDRLKTLL----VWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVL 191
L T V+IG + T W DG V W +PNN + +
Sbjct: 69 TSLPDLITGGWAPQVYIGMK-VGS-TNSDQTWTDGSSVDYDGWVSGEPNNGPNSRGAIAA 126
Query: 192 DGGRGWLWNDVGCKLDYLHWICQ 214
W DV ++ +ICQ
Sbjct: 127 GDYSRGFWADVYSNNNF-KYICQ 148
>1wk1_A Hypothetical protein YK1067A12; lectin C-type domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Caenorhabditis elegans} SCOP:
d.169.1.1
Length = 150
Score = 86.8 bits (215), Expect = 3e-20
Identities = 31/146 (21%), Positives = 45/146 (30%), Gaps = 23/146 (15%)
Query: 88 SFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVW 147
S N D S AR+ C ++GG L N F W
Sbjct: 5 SSGVKFLTVNDDI-LSMPQARNFCASAGGYLADDLGDDKNNFY-------SSIAANTQFW 56
Query: 148 IGAQKDPGITARTWKWVDGEVVTKP-------SWGKDQPNNYNGEQNCVVLDGGRG---W 197
IG K+ + + W G+ + W +P+N CV DG G
Sbjct: 57 IGLFKN---SDGQFYWDRGQGINPDLLNQPITYWANGEPSNDPTR-QCVYFDGRSGDKSK 112
Query: 198 LWNDVGCKLDYLHWICQHNPANCGSP 223
+W C +ICQ + +
Sbjct: 113 VWTTDTCA-TPRPFICQKHRYDSDHK 137
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 93.8 bits (232), Expect = 4e-20
Identities = 41/314 (13%), Positives = 69/314 (21%), Gaps = 28/314 (8%)
Query: 211 WICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCK-------E 263
C N + L S E ++
Sbjct: 491 QEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGCW 550
Query: 264 GFWTGVAPTCQYVDCGKLEH--IEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCG 321
W+ T + + + + G E + N G+
Sbjct: 551 SSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSIMENN----GQPCINDD 606
Query: 322 DGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRR--TGSVATYSCEPGFILFGSNELKCG 379
+ K C +P G + + G SC GF G +C
Sbjct: 607 EEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLTGFETVGYQYFRCL 666
Query: 380 LGGDWSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQV 439
G W C+ +C P + + G E TC + + G R
Sbjct: 667 PDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELTCPKGFVVA-GPSRYT- 724
Query: 440 CMRDGKWSGDTPSCELITCPEPEVPKG----GYVVGYDLNVHSTLEFHCEPGHLLVGQAS 495
C W+ + KG G + + + H
Sbjct: 725 CQ-GNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSGSECI--CMSPEEDCSHHSEDL-- 779
Query: 496 LKCTRQGDWDNMSP 509
C D ++
Sbjct: 780 --CVFDTDSNDYFT 791
Score = 91.5 bits (226), Expect = 3e-19
Identities = 48/324 (14%), Positives = 83/324 (25%), Gaps = 17/324 (5%)
Query: 175 GKDQPNNYNGEQNCVVLDGGRGWL-WNDVGCKLDYLHWICQHNPANCGSPDRHLNTTFVG 233
GK E++C + ++ + + C P N
Sbjct: 577 GKRCEGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRN 636
Query: 234 TVNTKL-GSTISYACPEGNMLVGSATRTC-KEGFWTGVAPTCQYVDCGKLEHIEHGTVTL 291
L G + +C G VG C +G W CQ +C K E T+T
Sbjct: 637 EKQLYLVGEDVEISCLTGFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITP 696
Query: 292 ETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVT- 350
G C + + + G +R C W L ++ G
Sbjct: 697 FQRLYRIGESIELTCPKGFVVAGPSRYTCQGN-SWTPPISNSLTCEKDTLTKLKGHCQLG 755
Query: 351 -TSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKY--VDCGSPANIDNGH- 406
+ + ++ +P CK+ C + + H
Sbjct: 756 QKQSGSECICMSPEEDCSHHSEDLCVFDTDSNDYFT--SPACKFLAEKCLNNQQLHFLHI 813
Query: 407 YSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELI---TCPEPEV 463
S +G + + + C K S T C + C +
Sbjct: 814 GSCQDGRQLEWGLERTRLSSNSTKKESC-GYDTCYDWEKCSASTSKCVCLLPPQCFKGGN 872
Query: 464 PKGGYVVGYDLNVHSTLEFHCEPG 487
+G + + CE G
Sbjct: 873 QLYCVKMGSSTSEKTLNI--CEVG 894
Score = 77.2 bits (189), Expect = 8e-15
Identities = 35/229 (15%), Positives = 57/229 (24%), Gaps = 21/229 (9%)
Query: 296 TTHGAVAIYACHENYTLIGE--TRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSG 353
+ AV + L+ + + E FD C P + G T SG
Sbjct: 456 KENPAVIDFELAPIVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSG 515
Query: 354 RR-TGSVATYSCEPGFILFGSNELKCGLGGDWSGK------APTCKYV---DCGSPANID 403
+ + + + G W T K +C +PA
Sbjct: 516 TECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQR 575
Query: 404 NGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEV 463
G ++ + K CP+P
Sbjct: 576 GGKRCEGEKRQEEDCTFSIMENNGQPCIN-------DDEEMKEVDLPEIEADSGCPQPVP 628
Query: 464 PKGGYVVGYDLN--VHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQ 510
P+ G++ V +E C G VG +C G W +
Sbjct: 629 PENGFIRNEKQLYLVGEDVEISCLTGFETVGYQYFRCLPDGTWRQGDVE 677
Score = 30.2 bits (67), Expect = 2.6
Identities = 9/103 (8%), Positives = 19/103 (18%), Gaps = 1/103 (0%)
Query: 410 LNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELITCPEPEVPKGGYV 469
L + +V ++ L + + + + + C P G
Sbjct: 452 LESVKENPAVIDFELAPIVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRP 511
Query: 470 VGYDLNVHSTLEFHCE-PGHLLVGQASLKCTRQGDWDNMSPQF 511
+ G W S
Sbjct: 512 TLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWS 554
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense,
metalloprotein, sugar binding protein; 1.90A {Rattus
norvegicus} SCOP: d.169.1.1 h.1.1.1
Length = 168
Score = 86.7 bits (215), Expect = 4e-20
Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 22/132 (16%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGI----TNTFLLGELERRKDRLK 142
+ + N ++ F+ ++ C G + N + +
Sbjct: 52 KKSGKKFFVTNHER-MPFSKVKALCSELRGTVAI----PRNAEENKAIQEVAKTS----- 101
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
++G D T + +V G +T +W KD+PN++ ++CV + LWND+
Sbjct: 102 ---AFLGIT-DEV-TEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTI--VDNGLWNDI 154
Query: 203 GCKLDYLHWICQ 214
C+ +C+
Sbjct: 155 SCQ-ASHTAVCE 165
>2ehf_A CUB and sushi domain-containing protein 1; CUB and sushi multiple
domains protein 1, CSMD1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 73
Score = 83.7 bits (207), Expect = 5e-20
Identities = 19/72 (26%), Positives = 27/72 (37%)
Query: 326 WNGTEPQCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWS 385
+G+ + C +P + G T S G T+ C F L G + C WS
Sbjct: 2 SSGSSGEIEKGGCGDPGIPAYGKRTGSSFLHGDTLTFECPAAFELVGERVITCQQNNQWS 61
Query: 386 GKAPTCKYVDCG 397
G P+C G
Sbjct: 62 GNKPSCSGPSSG 73
Score = 76.7 bits (189), Expect = 1e-17
Identities = 18/65 (27%), Positives = 24/65 (36%)
Query: 446 WSGDTPSCELITCPEPEVPKGGYVVGYDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWD 505
SG + E C +P +P G G TL F C LVG+ + C + W
Sbjct: 2 SSGSSGEIEKGGCGDPGIPAYGKRTGSSFLHGDTLTFECPAAFELVGERVITCQQNNQWS 61
Query: 506 NMSPQ 510
P
Sbjct: 62 GNKPS 66
Score = 74.8 bits (184), Expect = 5e-17
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 266 WTGVAPTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGK 325
+G + + CG +G T + HG + C + L+GE C +
Sbjct: 2 SSGSSGEIEKGGCGDPGIPAYGKRT--GSSFLHGDTLTFECPAAFELVGERVITCQQNNQ 59
Query: 326 WNGTEPQCLFDWC 338
W+G +P C
Sbjct: 60 WSGNKPSCSGPSS 72
Score = 74.4 bits (183), Expect = 6e-17
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 384 WSGKAPTCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRD 443
SG + + CG P G + + HG + C + L G C ++
Sbjct: 2 SSGSSGEIEKGGCGDPGIPAYGKRT--GSSFLHGDTLTFECPAAFELV-GERVI-TCQQN 57
Query: 444 GKWSGDTPSCELITC 458
+WSG+ PSC +
Sbjct: 58 NQWSGNKPSCSGPSS 72
Score = 61.3 bits (149), Expect = 3e-12
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 212 ICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVA 270
+ CG P G+ + G T+++ CP LVG TC++ W+G
Sbjct: 8 EIE--KGGCGDPGIPAYGKRTGS-SFLHGDTLTFECPAAFELVGERVITCQQNNQWSGNK 64
Query: 271 PTCQYVDCG 279
P+C G
Sbjct: 65 PSCSGPSSG 73
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate
binding, lectin, mannose, sugar BIND protein; 1.80A
{Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A
3pak_A
Length = 148
Score = 85.5 bits (212), Expect = 6e-20
Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 20/133 (15%)
Query: 86 ITSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKT 143
+ S + N +F + C +GG++ N + ++ +
Sbjct: 31 MLSVGDKVFSTNGQS-VNFDTIKEMCTRAGGNIAVPRTPE--ENEAIASIAKKYNNY--- 84
Query: 144 LLVWIGA--QKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWND 201
V++G + PG + ++DG V+ +W +P E CV + WND
Sbjct: 85 --VYLGMIEDQTPG----DFHYLDGASVSYTNWYPGEPRGQGKE-KCVEMYTDG--TWND 135
Query: 202 VGCKLDYLHWICQ 214
GC Y +C+
Sbjct: 136 RGCL-QYRLAVCE 147
>2msb_A Mannose-binding protein-A; lectin; HET: BMA MAN; 1.70A {Rattus
rattus} SCOP: d.169.1.1 PDB: 1msb_A 1ytt_A*
Length = 115
Score = 84.6 bits (210), Expect = 7e-20
Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 22/126 (17%)
Query: 93 CYEFNIDKGASFADARSKCQASGGDLVHGFRGI----TNTFLLGELERRKDRLKTLLVWI 148
+ N ++ F+ ++ C G + N + + ++
Sbjct: 5 FFVTNHER-MPFSKVKALCSELRGTVAI----PRNAEENKAIQEVAKTS--------AFL 51
Query: 149 GAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDY 208
G D T + +V G +T +W KD+PN++ ++CV + LWND+ C+
Sbjct: 52 GIT-DEV-TEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTI--VDNGLWNDISCQ-AS 106
Query: 209 LHWICQ 214
+C+
Sbjct: 107 HTAVCE 112
>1qdd_A Lithostathine; pancreatic stone inhibitor, metal binding protein;
HET: SIA NDG GAL; 1.30A {Homo sapiens} SCOP: d.169.1.1
PDB: 1lit_A
Length = 144
Score = 85.6 bits (212), Expect = 7e-20
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQ-ASGGDLVHGFRGITNTFLLGELERRKDRLKTLL 145
++ CY FN D+ ++ DA CQ + G+LV F+ + ++
Sbjct: 19 NAYRSYCYYFNEDR-ETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLI--KESGTDDFN 75
Query: 146 VWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCK 205
VWIG DP R W W G +V+ SWG P++ N + W DV C+
Sbjct: 76 VWIGLH-DPK-KNRAWHWSSGSLVSYKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCE 133
Query: 206 LDYLHWICQ 214
D ++C+
Sbjct: 134 -DKFSFVCK 141
>1sl6_A C-type lectin DC-signr; sugar binding protein; HET: GAL NDG FUC;
2.25A {Homo sapiens} SCOP: d.169.1.1 PDB: 1xar_A
Length = 184
Score = 86.1 bits (213), Expect = 1e-19
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 17/141 (12%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
T F NCY + + ++ D+ + CQ LV FL + R
Sbjct: 58 TFFQGNCYFMSNSQ-RNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRF-----S 111
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPS---WGKDQPNNYNGEQNCVVLDGGRGWLWNDVG 203
W+G D TW+WVDG ++ W +PNN E +C G WND
Sbjct: 112 WMGLS-DLN-QEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNE-DCAEFSGSG---WNDNR 165
Query: 204 CKLDYLHWICQHNPANCGSPD 224
C +D +WIC+ PA C +
Sbjct: 166 CDVDN-YWICK-KPAACFRDE 184
>1rdl_1 SUB-MBP-C, mannose-binding protein-C; C-type lectin,
calcium-binding protein; HET: MMA; 1.70A {Rattus rattus}
SCOP: d.169.1.1 PDB: 1rdj_1* 1rdk_1* 1rdi_1* 1rdm_1*
1rdn_1* 1rdo_1 1bv4_A 1kza_1* 1kzb_1* 1kzc_1* 1kzd_1*
1kze_1*
Length = 113
Score = 83.1 bits (206), Expect = 2e-19
Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 26/128 (20%)
Query: 93 CYEFNIDKGASFADARSKCQASGGDLVHGFRGI----TNTFLLGELERRKDRLKTLLVWI 148
+ ++ + A++ C G + N + + + ++
Sbjct: 3 YFMSSVRR-MPLNRAKALCSELQGTVAT----PRNAEENRAIQ--------NVAKDVAFL 49
Query: 149 GA--QKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKL 206
G Q+ ++ + G V +W + +PNN +NCVVL WNDV C
Sbjct: 50 GITDQRTEN----VFEDLTGNRVRYTNWNEGEPNNVGSGENCVVL--LTNGKWNDVPCS- 102
Query: 207 DYLHWICQ 214
D +C+
Sbjct: 103 DSFLVVCE 110
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 84.1 bits (208), Expect = 3e-19
Identities = 39/198 (19%), Positives = 59/198 (29%), Gaps = 49/198 (24%)
Query: 93 CYEFNIDKGASFADARSKCQASGGDLVHGFRGITN----TFLLGELERRKDRLKTLLVWI 148
Y ++ ++ AR C+ + DLV I N +L L + WI
Sbjct: 2 TYHYSEKP-MNWQRARRFCRDNYTDLVA----IQNKAEIEYLEKTLPFSRSY-----YWI 51
Query: 149 GAQKDPGITARTWKWVDGEVVTKPS---WGKDQPNNYNGEQNCVVL---DGGRGWLWNDV 202
G +K W WV WG +PNN +++CV + WND
Sbjct: 52 GIRK----IGGIWTWVGTNKSLTEEAENWGDGEPNNKKNKEDCVEIYIKRNKDAGKWNDD 107
Query: 203 GCKLDYLHWICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCK 262
C +C + C E + + T C
Sbjct: 108 ACHKLK-AALCY-TASCQPWSCSGHGE-----------------CVEI---INNYTCNCD 145
Query: 263 EGFWTGVAPTCQYVDCGK 280
G+ P CQ+V
Sbjct: 146 VGY---YGPQCQFVQVDP 160
>1uv0_A Pancreatitis-associated protein 1; lectin, C-type, secreted,
inflammatory response, acute phase; 1.78A {Homo sapiens}
SCOP: d.169.1.1 PDB: 2go0_A
Length = 149
Score = 83.3 bits (206), Expect = 4e-19
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 10/133 (7%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQA-SGGDLVHGFRGITNTFLLGELERRKDRLKTLL 145
++ +CY + S+ DA CQ G+LV G +F+ ++ +
Sbjct: 19 KAYGSHCYALFLSP-KSWTDADLACQKRPSGNLVSVLSGAEGSFVSSLVKSIGNSYS--Y 75
Query: 146 VWIG---AQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WND 201
VWIG + W+W +V+ +W ++ + +C L +L W D
Sbjct: 76 VWIGLHDPTQGTEPNGEGWEWSSSDVMNYFAWERNPSTISSPG-HCASLSRSTAFLRWKD 134
Query: 202 VGCKLDYLHWICQ 214
C L ++C+
Sbjct: 135 YNCN-VRLPYVCK 146
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 82.9 bits (205), Expect = 8e-19
Identities = 31/140 (22%), Positives = 46/140 (32%), Gaps = 17/140 (12%)
Query: 93 CYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQK 152
Y ++ S+ +R CQ DLV +L L WIG +K
Sbjct: 2 TYHYSTKA-YSWNISRKYCQNRYTDLVAIQNKNEIDYLNKVLPYYSSY-----YWIGIRK 55
Query: 153 DPGITARTWKWVDGEVVTKPS---WGKDQPNNYNGEQNCVVL---DGGRGWLWNDVGCKL 206
+TW WV + W ++PNN ++CV + WND C
Sbjct: 56 ----NNKTWTWVGTKKALTNEAENWADNEPNNKRNNEDCVEIYIKSPSAPGKWNDEHCL- 110
Query: 207 DYLHWICQHNPANCGSPDRH 226
H +C S +
Sbjct: 111 KKKHALCYTASCQDMSCSKQ 130
>2kv3_A Regenerating islet-derived protein 4; GISP, C-type lectin, REG IV,
disulfide bond, glycoPro lectin, secreted, sugar binding
protein; NMR {Homo sapiens}
Length = 131
Score = 81.3 bits (201), Expect = 1e-18
Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 17/136 (12%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQ--ASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
NCY + +++DA +CQ +G L + + + + +
Sbjct: 8 FYHKSNCYGYFRKL-RNWSDAELECQSYGNGAHLASILSLK--EASTIAEYI---SGYQR 61
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDG-GRGWLWND 201
+ +WIG DP + W+W+DG + SW + G ++C + W+
Sbjct: 62 SQSIWIGLH-DPQ-KRQQWQWIDGAMYLYRSW---SGKSMGGNKHCAEMSSNNNFLTWSS 116
Query: 202 VGCKLDYLHWICQHNP 217
C H++C++ P
Sbjct: 117 NECNKRQ-HFLCKYRP 131
>1dv8_A Asialoglycoprotein receptor 1; C-type lectin CRD, signaling
protein; 2.30A {Homo sapiens} SCOP: d.169.1.1
Length = 128
Score = 80.9 bits (200), Expect = 2e-18
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 26/137 (18%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
+R+CY F+ ++ADA + C+ LV + F+ + + +
Sbjct: 6 VEHERSCYWFSRSG-KAWADADNYCRLEDAHLVVVTSWE--EQKFV-------QHHIGPV 55
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKP--SWGKDQPNNY-----NGEQNCVVLDGGRGW 197
W+G WKWVDG +W +QP+++ G ++C
Sbjct: 56 NTWMGLHD----QNGPWKWVDGTDYETGFKNWRPEQPDDWYGHGLGGGEDCAHF--TDDG 109
Query: 198 LWNDVGCKLDYLHWICQ 214
WND C+ Y W+C+
Sbjct: 110 RWNDDVCQRPY-RWVCE 125
>1h8u_A MBP, eosinophil granule major basic protein 1; lectin, eosinophil
granule protein, EMBP; 1.8A {Homo sapiens} SCOP:
d.169.1.1 PDB: 2brs_A*
Length = 117
Score = 80.5 bits (199), Expect = 2e-18
Identities = 32/124 (25%), Positives = 46/124 (37%), Gaps = 10/124 (8%)
Query: 93 CYEFNIDKGASFADARSKCQ-ASGGDLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQ 151
Y +F+ A C+ G+LV I N + ++ L VWIG +
Sbjct: 3 RYLLVRSL-QTFSQAWFTCRRCYRGNLVS----IHNFNINYRIQCSVSALNQGQVWIGGR 57
Query: 152 KDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHW 211
R ++WVDG W QP + G +CV L G W C L +
Sbjct: 58 ITGSGRCRRFQWVDGSRWNFAYWAAHQPWSRGG--HCVALCTRGG-YWRRAHCL-RRLPF 113
Query: 212 ICQH 215
IC +
Sbjct: 114 ICSY 117
>1gz2_A Ovocleidin-17, OC-17 ovocleidin; structural protein, CTLD, eggshell
structural protein, phosphoprotein, sugar-binding
protein, glycoprotein; HET: SEP; 1.5A {Gallus gallus}
SCOP: d.169.1.1
Length = 142
Score = 79.9 bits (197), Expect = 5e-18
Identities = 26/138 (18%), Positives = 39/138 (28%), Gaps = 18/138 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQ--ASGGDLV-------HGFRGITNTFLLGELERR 137
C F + S++ A S C+ G L +
Sbjct: 10 VPTPGGCLGFFSRE-LSWSRAESFCRRWGPGSHLAAVRSAAELRL--LAELLNASRGGDG 66
Query: 138 KDRLKTLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGW 197
VWIG P +R+W+W DG SW + G C L +
Sbjct: 67 SGEGADGRVWIGLH-RPA-GSRSWRWSDGTAPRFASWHRTAKARRGG--RCAALRDEEAF 122
Query: 198 L-WNDVGCKLDYLHWICQ 214
W C ++C+
Sbjct: 123 TSWAARPCTERN-AFVCK 139
>2e3x_B Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 134
Score = 79.4 bits (196), Expect = 6e-18
Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 12/134 (8%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
+ + CY + ++ A C + G LV F+ +L
Sbjct: 8 SLYRYFCYRVFKEH-KTWEAAERFCMEHPNNGHLVSIESMEEAEFVA-KLLSNTTGKFIT 65
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WNDVG 203
WIG + +W DG V+ GK + C VL+ G+ W +
Sbjct: 66 HFWIGLMIKDKEQECSSEWSDGSSVSYDKLGKQEFR------KCFVLEKESGYRMWFNRN 119
Query: 204 CKLDYLHWICQHNP 217
C+ + ++C+ P
Sbjct: 120 CE-ERYLFVCKVPP 132
>3bx4_A Aggretin alpha chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB:
2vrp_A
Length = 136
Score = 79.4 bits (196), Expect = 8e-18
Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 13/135 (9%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
+ +D++CY+ ++ ++ +A C Q +G L F+ + ++ +
Sbjct: 10 SPYDQHCYQAFNEQ-KTWDEAEKFCRAQENGAHLASIESNG--EADFVSWLISQKDELAD 66
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
VWIG + + +W DG V+ + + W +
Sbjct: 67 EDYVWIGLRAQNKEQQCSSEWSDGSSVSYENLIDLHTKKCGALEKLT-----GFRKWVNY 121
Query: 203 GCKLDYLHWICQHNP 217
C+ ++C+ P
Sbjct: 122 YCE-QMHAFVCKLLP 135
>1fvu_A Botrocetin alpha chain; VON WILLBRAND factor modulator, C-type
lectin, metal- binding, loop exchanged dimer, toxin;
1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_B
1u0n_B 1u0o_A
Length = 133
Score = 78.7 bits (194), Expect = 1e-17
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
+S++ NCY+F K ++ADA C QA GG LV + +G+L + +
Sbjct: 7 SSYEGNCYKFFQQK-MNWADAERFCSEQAKGGHLVSIKIYSK--EKDFVGDLVTKNIQSS 63
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WND 201
L WIG + + + +W DG V+ + + C L+ G++ W +
Sbjct: 64 DLYAWIGLRVENKEKQCSSEWSDGSSVSYENVVERTVK------KCFALEKDLGFVLWIN 117
Query: 202 VGCKLDYLHWICQHNP 217
+ C ++C+ P
Sbjct: 118 LYCA-QKNPFVCKSPP 132
>3ubu_A Agglucetin subunit alpha-1; platelet inhibiting, agkisacucetin,
dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding;
1.91A {Deinagkistrodon acutus}
Length = 131
Score = 77.9 bits (192), Expect = 2e-17
Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
+++D++CY ++ DA C + GG LV F+ + + +T
Sbjct: 9 SAYDQSCYRVFKLL-KTWDDAEKFCTERPKGGHLVSIESAGERDFVAQLV---SENKQTD 64
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WNDVG 203
VW+G + + +W DG V+ ++ + Q C VL+ G+ W ++
Sbjct: 65 NVWLGLKIQSKGQQCSTEWTDGSSVSYENFSEYQSK------KCFVLEKNTGFRTWLNLN 118
Query: 204 CKLDYLHWICQHNP 217
C ++C+ P
Sbjct: 119 CG-SEYSFVCKSPP 131
>1jwi_A Bitiscetin; domain swapping, C-type lectin, toxin; 2.00A {Bitis
arietans} SCOP: d.169.1.1 PDB: 1uex_A
Length = 131
Score = 77.5 bits (191), Expect = 3e-17
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 14/130 (10%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLV--HGFRGITNTFLLGELERRKDRLKTL 144
+S+ +CY+ ++ DA C + G L F+ + +
Sbjct: 9 SSYKGHCYKVFKKV-GTWEDAEKFCVENSGHLASIDSKE--EADFVTKLASQTLTKFVYD 65
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGC 204
WIG + + + +W DG V + +P G W D+ C
Sbjct: 66 -AWIGLRDESKTQQCSPQWTDGSSVVYENVD--EPTKCFGLDVH-----TEYRTWTDLPC 117
Query: 205 KLDYLHWICQ 214
+IC+
Sbjct: 118 GEKN-PFICK 126
>1ukm_A EMS16 A chain, EMS16 subunit A; domain swapping, C-type lectin,
toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP:
d.169.1.1 PDB: 1v7p_A*
Length = 134
Score = 77.5 bits (191), Expect = 3e-17
Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 14/132 (10%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
T++D++CY + ++ +A C QA G LV F+ +L
Sbjct: 9 TAYDQHCYLAIGEP-QNWYEAERFCTEQAKDGHLVSIQSRE--EGNFVA-QLVSGFMHRS 64
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
+ VWIG + +W DG + +W + + G WN++
Sbjct: 65 EIYVWIGLRDRREEQQCNPEWNDGSKIIYVNWKEGESKMCQGLTKWT-----NFHDWNNI 119
Query: 203 GCKLDYLHWICQ 214
C+ D ++C+
Sbjct: 120 NCE-DLYPFVCK 130
>3tvj_A Mannan-binding lectin serine protease 2 A chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 86
Score = 74.7 bits (183), Expect = 8e-17
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 390 TCKYVDCGSPANIDNGH--YSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWS 447
+ VDCG P ++ +G Y G TT+ +V +Y+C++ ++ + VC DG W+
Sbjct: 2 SMTIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCDADGFWT 61
Query: 448 GDTPSCELITC----PEPEVPKGG 467
L C GG
Sbjct: 62 SSKGEKSLPVCEPVCGLSARTTGG 85
Score = 65.0 bits (158), Expect = 2e-13
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 272 TCQYVDCGKLEHIEHGTVTLETT--RTTHGAVAIYACHENY--TLIGETRRVCGDGGKWN 327
+ VDCG + + G V T TT+ AV Y+C E + + + + VC G W
Sbjct: 2 SMTIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCDADGFWT 61
Query: 328 GTE-----PQCLFDWCAEPPQISGG 347
++ P C C + +GG
Sbjct: 62 SSKGEKSLPVCEPV-CGLSARTTGG 85
Score = 50.8 bits (121), Expect = 2e-08
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 12/79 (15%)
Query: 338 CAEPPQISGGIVT--TSGRRT--GSVATYSCEPGF--ILFGSNELKCGLGGDWSG----- 386
C P + G V T T +V YSCE F + + C G W+
Sbjct: 8 CGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCDADGFWTSSKGEK 67
Query: 387 KAPTCKYVDCGSPANIDNG 405
P C+ V CG A G
Sbjct: 68 SLPVCEPV-CGLSARTTGG 85
Score = 46.9 bits (111), Expect = 5e-07
Identities = 23/86 (26%), Positives = 28/86 (32%), Gaps = 14/86 (16%)
Query: 213 CQHNPANCGSPDRHLN---TTFVGTVNTKLGSTISYACPEG--NMLVGSATRTCKE-GFW 266
+CG PD + G T + I Y+C E M V C GFW
Sbjct: 3 MT--IVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCDADGFW 60
Query: 267 TG-----VAPTCQYVDCGKLEHIEHG 287
T P C+ V CG G
Sbjct: 61 TSSKGEKSLPVCEPV-CGLSARTTGG 85
Score = 41.1 bits (96), Expect = 5e-05
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 452 SCELITCPEPEVPKGGYVVGYDLNVH----STLEFHCEPGH--LLVGQASLKCTRQGDWD 505
S ++ C P+ G V + +++ CE + V C G W
Sbjct: 2 SMTIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCDADGFWT 61
Query: 506 NMSPQ 510
+ +
Sbjct: 62 SSKGE 66
>1j34_A Coagulation factor IX-binding protein A chain; magnesium ION,
calcium ION, GLA domain, protein binding/blood clotting
complex; HET: CGU; 1.55A {Trimeresurus flavoviridis}
SCOP: d.169.1.1 PDB: 1bj3_A* 1j35_A* 1x2t_A* 1x2w_A
1ixx_A 1y17_A 1wt9_A 1iod_A*
Length = 129
Score = 75.9 bits (187), Expect = 8e-17
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
+S++ +CY+ ++ DA C QA GG LV F+ +L +
Sbjct: 7 SSYEGHCYKPFKLY-KTWDDAERFCTEQAKGGHLVSIESAG--EADFVA-QLVTENIQNT 62
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WND 201
VWIG + + +W DG V+ +W + + C+ L+ G+ W +
Sbjct: 63 KSYVWIGLRVQGKEKQCSSEWSDGSSVSYENWIEAESK------TCLGLEKETGFRKWVN 116
Query: 202 VGCKLDYLHWICQ 214
+ C ++C+
Sbjct: 117 IYCG-QQNPFVCE 128
>2yra_A Seizure 6-like protein isoform 3; disulfide bond, sushi domain,
SCR, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 73.2 bits (180), Expect = 2e-16
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 390 TCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGD 449
+ C I NG + + G+ Y CD Y + C D WS D
Sbjct: 2 SSGSSGCSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTL--TCQWDLSWSSD 59
Query: 450 TPSCELITCPEPE 462
P CE P
Sbjct: 60 PPFCEKTEESGPS 72
Score = 72.1 bits (177), Expect = 4e-16
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 338 CAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSNELKCGLGGDWSGKAPTCKYVD 395
C++ P+I G TTS G+ TY C+PG+ + GS+ L C WS P C+ +
Sbjct: 8 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCEKTE 67
Query: 396 CGSPAN 401
P++
Sbjct: 68 ESGPSS 73
Score = 67.5 bits (165), Expect = 2e-14
Identities = 17/70 (24%), Positives = 24/70 (34%)
Query: 272 TCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEP 331
+ C L I++G T T GA Y C Y ++G C W+ P
Sbjct: 2 SSGSSGCSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPP 61
Query: 332 QCLFDWCAEP 341
C + P
Sbjct: 62 FCEKTEESGP 71
Score = 54.8 bits (132), Expect = 7e-10
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 452 SCELITCPEPEVPKGGYVVG--YDLNVHSTLEFHCEPGHLLVGQASLKCTRQGDWDNMSP 509
S C + + G+ +L + + + C+PG+ +VG +L C W + P
Sbjct: 2 SSGSSGCSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPP 61
Query: 510 Q 510
Sbjct: 62 F 62
Score = 53.6 bits (129), Expect = 1e-09
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 220 CGSPDRHLNTTFVGT-VNTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTCQYVD 277
C N + G+ I+Y C G +VGS T TC+ W+ P C+ +
Sbjct: 8 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCEKTE 67
Query: 278 CGKLE 282
Sbjct: 68 ESGPS 72
>1c3a_A Flavocetin-A: alpha subunit; C-type lectin-like domains, membrane
protein; 2.50A {Trimeresurus flavoviridis} SCOP:
d.169.1.1 PDB: 1v4l_A
Length = 135
Score = 74.8 bits (184), Expect = 3e-16
Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 21/141 (14%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQ--ASGGDLVHGFRGIT----NTFLLGELERRKDR 140
+++DR CY+ ++ DA S C+ LV I F+ +L K +
Sbjct: 9 SAYDRYCYQAFSKP-KNWEDAESFCEEGVKTSHLVS----IESSGEGDFVA-QLVAEKIK 62
Query: 141 LKTLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRG-WLW 199
VWIG + +W D V + K C L G W
Sbjct: 63 TSFQYVWIGLRIQNKEQQCRSEWSDASSVNYENLVKQFSK------KCYALKKGTELRTW 116
Query: 200 NDVGCKLDYLHWICQHNPANC 220
+V C +C++ C
Sbjct: 117 FNVYCG-TENPEVCKY-TPEC 135
>3gpr_C Rhodocetin subunit gamma; disulfide bond, lectin, secreted, toxin,
cell adhesion; 3.20A {Calloselasma rhodostoma}
Length = 134
Score = 74.4 bits (183), Expect = 4e-16
Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
+++D++CY+ + ++ +A C QA G LV F+ +L +
Sbjct: 8 SAYDQHCYQAFNEP-KTWDEAERFCTEQAKRGHLVSIGSDG--EADFVA-QLVTNNIKRP 63
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRG-WLWND 201
L VWIG + + +W + +W + C L G W+
Sbjct: 64 ELYVWIGLRDRRKEQQCSSEWSMSASIIYVNWNTGESQ------MCQGLARWTGFRKWDY 117
Query: 202 VGCKLDYLHWICQHNPANC 220
C+ ++C+ + C
Sbjct: 118 SDCQ-AKNPFVCKF-SSEC 134
>3vpp_A C-type lectin domain family 9 member A; dendritic cell, C-type
lectin-like domain, membrane, immune; 1.64A {Homo
sapiens}
Length = 132
Score = 73.2 bits (180), Expect = 9e-16
Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 20/138 (14%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITN----TFLLGELERRKDRLK 142
+CY + + + ++ C G L+ I + F+ G L + K
Sbjct: 9 IQNRESCYYVSEIW-SIWHTSQENCLKEGSTLLQ----IESKEEMDFITGSLRKIKGSYD 63
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
W+G +D + W W DG + ++ + Q C +
Sbjct: 64 Y---WVGLSQDG--HSGRWLWQDGSSPSPGLLPAERSQ--SANQVCGYVKSNS---LLSS 113
Query: 203 GCKLDYLHWICQHNPANC 220
C ++IC+
Sbjct: 114 NCDTWK-YFICEKYALRS 130
>1fvu_B Botrocetin beta chain; VON WILLBRAND factor modulator, C-type
lectin, metal- binding, loop exchanged dimer, toxin;
1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_C
1u0n_C 1u0o_B
Length = 125
Score = 72.4 bits (178), Expect = 1e-15
Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 20/132 (15%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
+S++ +CY F + + DA C Q +G LV F+ + LK
Sbjct: 7 SSYEGHCYRFFKEW-MHWDDAEEFCTEQQTGAHLVSFQSKE--EADFVRSLT---SEMLK 60
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
+VWIG D ++W DG + E CV W +
Sbjct: 61 GDVVWIGLS-DVW-NKCRFEWTDGMEFDYDDY------YLIAEYECVASKPTNN-KWWII 111
Query: 203 GCKLDYLHWICQ 214
C + +++C+
Sbjct: 112 PCT-RFKNFVCE 122
>1umr_A Convulxin alpha, CVX alpha; lectin, C-type lectin, platelet,
sugar-binding protein, activator, snake venom; 2.40A
{Crotalus durissus terrificus} SCOP: d.169.1.1 PDB:
1uos_A
Length = 135
Score = 72.5 bits (178), Expect = 2e-15
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
+D++CY ++ ++ DA C QA G LV + F+ + + +
Sbjct: 9 YYYDQHCYRIFNEE-MNWEDAEWFCTKQAKGAHLVSIKSAK--EADFVAWMVTQNIEESF 65
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WND 201
+ V IG + + KW DG V+ + C +L G+ W
Sbjct: 66 SH-VSIGLRVQNKEKQCSTKWSDGSSVSYDNLLDLYIT------KCSLLKKETGFRKWFV 118
Query: 202 VGCKLDYLHWICQHNPANC 220
C + ++C+ P C
Sbjct: 119 ASCI-GKIPFVCKF-PPQC 135
>1sb2_B Rhodocetin beta subunit; C-type lectin, domain swapping, toxin;
1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB:
3gpr_B
Length = 129
Score = 72.5 bits (178), Expect = 2e-15
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 18/131 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
++ CY+ +K ++ +A C QA G LV FL + D+ +
Sbjct: 9 SASKLYCYKPFKEK-KTWIEAERFCAKQAENGHLVSIGSAAEADFLDLVIVVNFDKQRYR 67
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRG-WLWNDVG 203
W G + R KW +G V+ + + C V+ G W
Sbjct: 68 -AWTGLTE------RNLKWTNGASVSYENLYEPYIR------KCFVVQPWEGKSKWYKAD 114
Query: 204 CKLDYLHWICQ 214
C+ + ++C+
Sbjct: 115 CE-EKNAFLCK 124
>2yby_A Complement factor H; immune system, complement regulation, innate
immunity, infec; 1.58A {Mus musculus}
Length = 124
Score = 72.2 bits (177), Expect = 2e-15
Identities = 28/125 (22%), Positives = 41/125 (32%), Gaps = 17/125 (13%)
Query: 340 EPPQISGGIVTTSGRRT-------GSVATYSCEPGFILF---GSNELKCGLGGDWSGKAP 389
E PQ G + G+ +Y C+ GF + L+C G W
Sbjct: 6 EFPQFKYGRLYYEESLRPNFPVSIGNKYSYKCDNGFSPPSGYSWDYLRCTAQG-WEP-EV 63
Query: 390 TCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGD 449
C C ++NG + G + C + Y L+ G C +G WS
Sbjct: 64 PCV-RKCVFH-YVENGDSAYWEKVYVQGQSLKVQCYNGYSLQNGQDTMT-CTENG-WS-P 118
Query: 450 TPSCE 454
P C
Sbjct: 119 PPKCI 123
Score = 64.1 bits (156), Expect = 1e-12
Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 14/124 (11%)
Query: 220 CGSPD-----RHLNTTFVGTVNTKLGSTISYACPEG---NMLVGSATRTCKEGFWTGVAP 271
C P + + +G+ SY C G C W
Sbjct: 5 CEFPQFKYGRLYYEESLRPNFPVSIGNKYSYKCDNGFSPPSGYSWDYLRCTAQGWEP-EV 63
Query: 272 TCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLI-GETRRVCGDGGKWNGTE 330
C C +E+G G C+ Y+L G+ C + G W+
Sbjct: 64 PCV-RKCVFHY-VENGDSAYWEKVYVQGQSLKVQCYNGYSLQNGQDTMTCTENG-WS-PP 119
Query: 331 PQCL 334
P+C+
Sbjct: 120 PKCI 123
Score = 63.0 bits (153), Expect = 3e-12
Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 12/115 (10%)
Query: 396 CGSPANIDNGHYSLLNGTTTH-----GSVAEYTCDDDYWLEAGAMRRQV-CMRDGKWSGD 449
C P G + G+ Y CD+ + +G + C G W
Sbjct: 5 CEFP-QFKYGRLYYEESLRPNFPVSIGNKYSYKCDNGFSPPSGYSWDYLRCTAQG-WEP- 61
Query: 450 TPSCELITCPEPEVPKGGYVV-GYDLNVHSTLEFHCEPGHLLV-GQASLKCTRQG 502
C + C V G +L+ C G+ L GQ ++ CT G
Sbjct: 62 EVPC-VRKCVFHYVENGDSAYWEKVYVQGQSLKVQCYNGYSLQNGQDTMTCTENG 115
Score = 32.2 bits (73), Expect = 0.14
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 457 TCPEPEVPKGG------YVVGYDLNVHSTLEFHCEPGHLLVGQ---ASLKCTRQGDWD 505
C P+ G + +++ + + C+ G L+CT QG W+
Sbjct: 4 PCEFPQFKYGRLYYEESLRPNFPVSIGNKYSYKCDNGFSPPSGYSWDYLRCTAQG-WE 60
>1jwi_B Platelet aggregation inducer; domain swapping, C-type lectin,
toxin; 2.00A {Bitis arietans} SCOP: d.169.1.1 PDB:
1uex_B
Length = 125
Score = 71.3 bits (175), Expect = 3e-15
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 18/130 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQ--ASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
+S+ +CY+ + ++ADA C+ +GG L+ F+ ++++ +
Sbjct: 9 SSYKGHCYKVFKVE-KTWADAEKFCKELVNGGHLMSVNSREEGEFISKLA---LEKMRIV 64
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGC 204
LVWIG +W DG + + + E C V + W C
Sbjct: 65 LVWIGLS-HFWRI-CPLRWTDGARLDYRAL--------SDEPICFVAESFHN-KWIQWTC 113
Query: 205 KLDYLHWICQ 214
++C+
Sbjct: 114 N-RKKSFVCK 122
>1sb2_A Rhodocetin alpha subunit; C-type lectin, domain swapping, toxin;
1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB:
3gpr_A
Length = 133
Score = 71.3 bits (175), Expect = 5e-15
Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 16/133 (12%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
+S CY +K ++ +A C Q LV F+ + K
Sbjct: 7 SSTKSYCYRPFKEK-KTWEEAERFCTEQEKEAHLVSMENRL--EAVFVD-MVMENNFENK 62
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WND 201
WIG + + +W DG ++ + + + C ++D G W+
Sbjct: 63 IYRSWIGLKIENKGQRSNLEWSDGSSISYENLYEPYM------EKCFLMDHQSGLPKWHT 116
Query: 202 VGCKLDYLHWICQ 214
C+ + ++C+
Sbjct: 117 ADCE-EKNVFMCK 128
>3ubu_B Agglucetin subunit beta-2; platelet inhibiting, agkisacucetin,
dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding;
1.91A {Deinagkistrodon acutus}
Length = 126
Score = 70.9 bits (174), Expect = 5e-15
Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 21/132 (15%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
++++ +CY + + ++ DA C Q GG LV H FL+ L
Sbjct: 9 SAYEGHCYLV-VKEKKTWDDAEKFCTEQRKGGHLVSVHSRE--EADFLVHLA---YPILD 62
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
L+W+G + +W DG + SW K C++ W ++
Sbjct: 63 LSLIWMGLS-NMW-NDCKREWSDGTKLDFKSWAKTSD--------CLIGKTDGDNQWLNM 112
Query: 203 GCKLDYLHWICQ 214
C +++C+
Sbjct: 113 DCS-KKHYFVCK 123
>1ypq_A Oxidised low density lipoprotein (lectin-like) receptor 1; oxidized
low density lipoprotein receptor, LOX-1, CTLD, C- type
lectin like domain; 1.40A {Homo sapiens} SCOP: d.169.1.1
PDB: 1ypu_A 1yxk_A 3vlg_A 1ypo_A 1yxj_A
Length = 135
Score = 70.5 bits (173), Expect = 8e-15
Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 17/133 (12%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELE--RRKDRLKTL 144
NCY F+ ++ ++ KC + L+ I +T +L+ ++ +
Sbjct: 14 IWHGENCYLFSSGS-FNWEKSQEKCLSLDAKLLK----INST---ADLDFIQQAISYSSF 65
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWG-KDQPNNYNGEQNCVVLDGGRGWLWNDVG 203
W+G + + W W DG + + + + C + G
Sbjct: 66 PFWMGLSRRN--PSYPWLWEDGSPLMPHLFRVRGAVSQTYPSGTCAYIQRGA---VYAEN 120
Query: 204 CKLDYLHWICQHN 216
C L ICQ
Sbjct: 121 CILAA-FSICQKK 132
>1oz7_B Echicetin B-chain; platelet aggregation, dimer, toxin; 2.40A {Echis
carinatus} SCOP: d.169.1.1
Length = 123
Score = 70.1 bits (172), Expect = 8e-15
Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 22/132 (16%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
+ ++ CY+ ++ ++ADA C Q G LV + F++ LK
Sbjct: 7 SVYEGYCYKVFKER-MNWADAEKFCTKQHKDGHLVSFRNSK--EVDFVISLA---FPMLK 60
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
LVWIG D W+W DG + +W + E++C + W
Sbjct: 61 NDLVWIGLT-DYWRD-CNWEWSDGAQLDYKAW--------DNERHCFIYKNTDN-QWTRR 109
Query: 203 GCKLDYLHWICQ 214
C + ++C+
Sbjct: 110 DCTWTF-SFVCK 120
>2bpd_A Dectin-1; receptor, beta-glucan, fungal recognition, C-type
lectin-like domain, CTLD, carbohydrate; 1.5A {Mus
musculus} PDB: 2bph_A 2bpe_A 2cl8_A*
Length = 142
Score = 70.6 bits (173), Expect = 1e-14
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 14/131 (10%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
++CY F+ S+ ++ C G L+ I N+ +E + +
Sbjct: 22 IMHGKSCYLFSFSG-NSWYGSKRHCSQLGAHLLK----IDNSKEFEFIESQTSSHRINAF 76
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSW--GKDQPNNYNGEQNCVVLDGGRGWLWNDVGC 204
WIG ++ + W W DG S+ P NCV + G + C
Sbjct: 77 WIGLSRNQ--SEGPWFWEDGSAFFPNSFQVRNAVPQESLLH-NCVWIHGSE---VYNQIC 130
Query: 205 KLDYLHWICQH 215
+ IC+
Sbjct: 131 NTSS-YSICEK 140
>1j34_B Coagulation factor IX-binding protein B chain; magnesium ION,
calcium ION, GLA domain, protein binding/blood clotting
complex; HET: CGU; 1.55A {Trimeresurus flavoviridis}
SCOP: d.169.1.1 PDB: 1bj3_B 1ixx_B* 1j35_B* 1x2t_B*
1x2w_B 1wt9_B 1iod_B 1y17_B
Length = 123
Score = 69.7 bits (171), Expect = 1e-14
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 22/132 (16%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
+S++ +CY+ + ++ADA + C Q +GG LV F++
Sbjct: 7 SSYEGHCYKPFSEP-KNWADAENFCTQQHAGGHLVSFQSSE--EADFVVKLA---FQTFG 60
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
+ W+G + W+W + ++ +W ++ CV W
Sbjct: 61 HSIFWMGLS-NVW-NQCNWQWSNAAMLRYKAWAEESY--------CVYFKSTNN-KWRSR 109
Query: 203 GCKLDYLHWICQ 214
C++ ++C+
Sbjct: 110 ACRMMA-QFVCE 120
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB:
2vrp_B
Length = 146
Score = 70.5 bits (173), Expect = 1e-14
Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
+S++ +CY+ + ++ADA C Q LV F++ + RLK
Sbjct: 30 SSYEGHCYKPFNEP-KNWADAERFCKLQPKHSHLVSFQSAEEADFVVKLT---RPRLKAN 85
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGC 204
LVW+G + W+W DG + ++ + C+ G W ++ C
Sbjct: 86 LVWMGLS-NIWHG-CNWQWSDGARLN--------YKDWQEQSECLAFRGVHT-EWLNMDC 134
Query: 205 KLDYLHWICQ 214
++C+
Sbjct: 135 S-STCSFVCK 143
>2e3x_C Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 122
Score = 69.0 bits (169), Expect = 2e-14
Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 22/132 (16%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
S++++CY+ D ++ DA C Q G LV H F++ + + L+
Sbjct: 8 LSYEQHCYKGFNDL-KNWTDAEKFCTEQKKGSHLVSLHSRE--EEKFVVNLI---SENLE 61
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
WIG + +W D V + E C+++ +W +
Sbjct: 62 YPATWIGLG-NMW-KDCRMEWSDRGNVKYKALA--------EESYCLIMITHEK-VWKSM 110
Query: 203 GCKLDYLHWICQ 214
C +C+
Sbjct: 111 TCNFIA-PVVCK 121
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system;
2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D
1ja3_A 1p1z_D
Length = 203
Score = 71.1 bits (174), Expect = 2e-14
Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 17/129 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
+ CY F ++K +++ ++ CQ G ++ I + EL+ + +
Sbjct: 85 FCYSTKCYYFIMNK-TTWSGCKANCQHYGVPILK----IEDE---DELKFLQRHVIPGNY 136
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKL 206
WIG D + W W+D K + N+ CV L R D+ C +
Sbjct: 137 WIGLSYDK--KKKEWAWIDNGPSK--LDMKIKKMNFKSR-GCVFLSKAR---IEDIDCNI 188
Query: 207 DYLHWICQH 215
Y + IC
Sbjct: 189 PY-YCICGK 196
>3m9z_A Killer cell lectin-like receptor subfamily B MEMB; C-type
lectin-like domain, domain swapping, disulfide bond,
transmembrane protein; 1.70A {Mus musculus} PDB: 3t3a_A
Length = 139
Score = 69.0 bits (169), Expect = 3e-14
Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 24/142 (16%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITN----TFLLGELERRKDRLK 142
S C+ + ++ + C G L+ I + FLL ++ + +
Sbjct: 11 LSHRDKCFHVSQVS-NTWEEGLVDCDGKGATLML----IQDQEELRFLLDSIKEKYNS-- 63
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
WIG + WKW++G + + +C + G +
Sbjct: 64 ---FWIGLRYTL--PDMNWKWINGSTLNSDVL---KITGDTENDSCAAISGDK---VTFE 112
Query: 203 GCKLDYLHWICQHNPANCGSPD 224
C D WICQ +
Sbjct: 113 SCNSDN-RWICQK-ELYHETLS 132
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 73.6 bits (181), Expect = 3e-14
Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 14/148 (9%)
Query: 338 CAEPPQISGGIVT--TSGRRTGSVATYSCEPGFILFGSNE------LKCGLGGDWSGKAP 389
C P G V+ + + CE G+ L + C G W P
Sbjct: 17 CPYPMAPPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMP 76
Query: 390 TCKYVDCGSPANIDNGH--YSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWS 447
C VDCG P ++ +G Y G TT+ +V +Y+C++ ++ + VC DG W+
Sbjct: 77 ACSIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWT 136
Query: 448 GDTPSCELITCP----EPEVPKGGYVVG 471
L C GG + G
Sbjct: 137 SSKGEKSLPVCEPVCGLSARTTGGQIYG 164
Score = 63.2 bits (154), Expect = 8e-11
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 245 YACPEGNMLVGSATRTC-KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETT--RTTHGAV 301
Y +G++ + S T C K+G W P C VDCG + + G V T TT+ AV
Sbjct: 49 YELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPGVTTYKAV 108
Query: 302 AIYACHENY--TLIGETRRVCGDGGKWNGTE-----PQCLFDWCAEPPQ-----ISGGIV 349
Y+C E + + + + VC G W ++ P C C + I GG
Sbjct: 109 IQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVCEPV-CGLSARTTGGQIYGGQK 167
Query: 350 TTSGR 354
G
Sbjct: 168 AKPGD 172
>3ff7_C Killer cell lectin-like receptor subfamily G member 1;
KLRG1-cadherin complex, calcium, cell adhesion, cell
junction, cell membrane; 1.80A {Homo sapiens}
Length = 112
Score = 68.2 bits (167), Expect = 3e-14
Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 22/128 (17%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
+ +CY F++++ + + C A L+ IT+ E+ + L
Sbjct: 6 MKYGNHCYYFSVEE-KDWNSSLEFCLARDSHLLV----ITDN---QEMSLLQVFLSEAFS 57
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKL 206
WIG + + W+W DG + ++ + Q C ++ C++
Sbjct: 58 WIGLRNN-----SGWRWEDGSPLNFSRI-----SSNSFVQTCGAINKNG---LQASSCEV 104
Query: 207 DYLHWICQ 214
HW+C+
Sbjct: 105 PL-HWVCK 111
>1c3a_B Flavocetin-A: beta subunit; C-type lectin-like domains, membrane
protein; 2.50A {Trimeresurus flavoviridis} SCOP:
d.169.1.1 PDB: 1v4l_B
Length = 125
Score = 68.2 bits (167), Expect = 4e-14
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 22/132 (16%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
+S+D +CY+ K ++ DA C Q G LV H F+ + LK
Sbjct: 9 SSYDEHCYQVFQQK-MNWEDAEKFCTQQHKGSHLVSFHSSE--EVDFVTSKT---FPILK 62
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
VWIG + T +W DG + +W +G +C+V W +
Sbjct: 63 YDFVWIGLS-NVW-NECTKEWSDGTKLDYKAW--------SGGSDCIVSKTTDN-QWLSM 111
Query: 203 GCKLDYLHWICQ 214
C Y + +C+
Sbjct: 112 DCSSKY-YVVCK 122
>3bdw_A Natural killer cells antigen CD94; NK cells, receptor,
glycoprotein, lectin, signal-A transmembrane, immune
system receptor; 2.50A {Homo sapiens} SCOP: d.169.1.1
PDB: 3cdg_J 1b6e_A 3cii_G
Length = 123
Score = 67.8 bits (166), Expect = 5e-14
Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 26/133 (19%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITN----TFLLGELERRKDRLK 142
+ NCY + ++ ++ ++R C + L+ + N F+
Sbjct: 10 VGYRCNCYFISSEQ-KTWNESRHLCASQKSSLLQ----LQNTDELDFM---------SSS 55
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
WIG W W +G +++ + + N +NC+ D
Sbjct: 56 QQFYWIGLSYSE--EHTAWLWENGSALSQYLFPSFETFN---TKNCIAY--NPNGNALDE 108
Query: 203 GCKLDYLHWICQH 215
C+ +IC+
Sbjct: 109 SCEDKN-RYICKQ 120
>1umr_C Convulxin beta, CVX beta; lectin, C-type lectin, platelet,
sugar-binding protein, activator, snake venom; 2.40A
{Crotalus durissus terrificus} SCOP: d.169.1.1 PDB:
1uos_B
Length = 125
Score = 67.8 bits (166), Expect = 6e-14
Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 26/134 (19%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLVHGFRGIT----NTFLLGELERRKDR 140
+S+DR CY+ + ++ADA C Q +G LV F++
Sbjct: 9 SSYDRYCYKVFKQE-MTWADAEKFCTQQHTGSHLVS----FHSTEEVDFVVKMT---HQS 60
Query: 141 LKTLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWN 200
LK+ WIGA + W+W DG W + E C++ W
Sbjct: 61 LKSTFFWIGAN-NIW-NKCNWQWSDGTKPEYKEW--------HEEFECLISRTFDN-QWL 109
Query: 201 DVGCKLDYLHWICQ 214
C Y ++C+
Sbjct: 110 SAPCSDTY-SFVCK 122
>3ff9_A Killer cell lectin-like receptor subfamily G member 1; natural
killer cell receptor KLTG1, glycoprotein, membrane,
phosphoprotein, signal-anchor; 1.80A {Mus musculus} PDB:
3ff8_C
Length = 115
Score = 67.4 bits (165), Expect = 7e-14
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 23/130 (17%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
T +CY F+++K + + C G L+ + ++ + L
Sbjct: 7 TRNGSHCYYFSMEK-KDWNSSLKFCADKGSHLLT----FPDN---QGVKLFGEYLGQDFY 58
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKL 206
WIG + G W+W G ++ + Q C + C++
Sbjct: 59 WIGLRNIDG-----WRWEGGPALSLRIL------TNSLIQRCGAIHRNG---LQASSCEV 104
Query: 207 DYLHWICQHN 216
WIC+
Sbjct: 105 AL-QWICKKV 113
>2c6u_A CLEC1B protein; lectin, rhodocytin, aggretin, C-type lectin-like,
platelets, thrombosis; 1.6A {Homo sapiens}
Length = 122
Score = 67.4 bits (165), Expect = 8e-14
Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 25/133 (18%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITN----TFLLGELERRKDRLK 142
+ +CY F ++ +++ C L+ I N ++
Sbjct: 8 RYYGDSCYGFFRHN-LTWEESKQYCTDMNATLLK----IDNRNIVEYIK--------ART 54
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
L+ W+G + + WKW DG V+++ + + G NC G+ +
Sbjct: 55 HLIRWVGLSRQK--SNEVWKWEDGSVISENMFEFLEDG--KGNMNCAYFHNGK---MHPT 107
Query: 203 GCKLDYLHWICQH 215
C+ + + +C+
Sbjct: 108 FCENKH-YLMCER 119
>1oz7_A Echicetin A-chain; platelet aggregation, dimer, toxin; 2.40A {Echis
carinatus} SCOP: d.169.1.1
Length = 131
Score = 66.8 bits (163), Expect = 2e-13
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 14/131 (10%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQ--ASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
+S CY + ++ +A C G L+ + + ++ K
Sbjct: 7 SSNGVYCYMLFKEP-KTWDEAEKFCNKQGKDGHLLSIESKKEEILVDIVV--SENIGKMY 63
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRG-WLWNDVG 203
+W G + + +W DG C VL+ W
Sbjct: 64 KIWTGLSERSKEQHCSSRWSDGSFFRSYEIA-------IRYSECFVLEKQSVFRTWVATP 116
Query: 204 CKLDYLHWICQ 214
C+ + ++C+
Sbjct: 117 CENTF-PFMCK 126
>3g8l_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.50A {Mus musculus}
Length = 190
Score = 68.0 bits (166), Expect = 2e-13
Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 18/134 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
+ CY F +D+ +++ + CQ S L+ I N L L+
Sbjct: 72 FCYGIKCYYFVMDR-KTWSGCKQTCQISSLSLLK----IDNEDELKFLKLLVPSDSY--- 123
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKL 206
WIG D + W W++ + C++L R ++ C
Sbjct: 124 WIGLSYDN--KKKDWAWINNGPSKLALN---TMKYNIRDGGCMLLSKTR---LDNDNCDK 175
Query: 207 DYLHWICQHNPANC 220
+ IC +
Sbjct: 176 SF-ICICGK-RLDK 187
>2yhf_A C-type lectin domain family 5 member A; immune system; 1.90A {Homo
sapiens}
Length = 118
Score = 65.9 bits (161), Expect = 2e-13
Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 19/128 (14%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
+ C+ + + +S+ ++R C+ G L + +L+ +D
Sbjct: 7 EFYQARCFFLSTSE-SSWNESRDFCKGKGSTLAI----VNTP---EKLKFLQDITDAEKY 58
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKL 206
+IG + W+W++ V N N NC + + ++ C +
Sbjct: 59 FIGLIYHR--EEKRWRWINNSVFNG------NVTNQNQNFNCATIGLTKT--FDAASCDI 108
Query: 207 DYLHWICQ 214
Y IC+
Sbjct: 109 SY-RRICE 115
>3hup_A Early activation antigen CD69; C-type lectin-like domain, disulfide
bond, glycoprotein, LEC membrane, phosphoprotein,
signal-anchor, transmembrane; 1.37A {Homo sapiens} PDB:
1e87_A 1e8i_A 3cck_A
Length = 130
Score = 66.3 bits (162), Expect = 2e-13
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 22/128 (17%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
+ R CY + K S+ A++ C G L I + ++ K
Sbjct: 21 VGYQRKCYFISTVK-RSWTSAQNACSEHGATLAV----IDSE---KDMNFLKRYAGREEH 72
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKL 206
W+G +K+PG WKW +G+ +W N G CV L + + C+
Sbjct: 73 WVGLKKEPG---HPWKWSNGKEFN--NW-----FNVTGSDKCVFLKNTE---VSSMECEK 119
Query: 207 DYLHWICQ 214
+ +WIC
Sbjct: 120 NL-YWICN 126
>3g8k_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.00A {Mus musculus} PDB:
1qo3_C 3cad_A
Length = 130
Score = 65.9 bits (161), Expect = 3e-13
Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 17/129 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
+ CY F +D+ +++ + CQ S L+ I N EL+ K + +
Sbjct: 12 FCYGIKCYYFVMDR-KTWSGCKQTCQISSLSLLK----IDNE---DELKFLKLLVPSDSY 63
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKL 206
WIG D + W W++ + C++L R ++ C
Sbjct: 64 WIGLSYDN--KKKDWAWINNGPSKLALN---TMKYNIRDGGCMLLSKTR---LDNDNCDK 115
Query: 207 DYLHWICQH 215
+ IC
Sbjct: 116 SF-ICICGK 123
>3gpr_D Rhodocetin subunit delta; disulfide bond, lectin, secreted, toxin,
cell adhesion; 3.20A {Calloselasma rhodostoma}
Length = 124
Score = 65.5 bits (160), Expect = 4e-13
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 18/131 (13%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLVHGFRGITNTFLLGELERRKDRLKTL 144
+S++ CY + ++ DA S C Q G L F+ LK
Sbjct: 6 SSYNGYCYRVFSEL-KTWEDAESFCYAQHKGSRLASIHSREEEAFVGKLA---SQTLKYT 61
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDG-GRGWLWNDVG 203
+W+G + A W+W D + W + C V+ W + G
Sbjct: 62 SMWLGLN-NAW-AACKWEWSDDAKLDYKVWLR--------RAYCAVMVVKTDRIFWYNRG 111
Query: 204 CKLDYLHWICQ 214
C+ + ++C+
Sbjct: 112 CE-KTVSFLCK 121
>1ukm_B EMS16 B chain, EMS16 subunit B; domain swapping, C-type lectin,
toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP:
d.169.1.1 PDB: 1v7p_B*
Length = 128
Score = 65.6 bits (160), Expect = 5e-13
Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 22/133 (16%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKC--QASGGDLV--HGFRGITNTFLLGELERRKDRLK 142
+SFD++CY+ ++ +A C Q G L H F+ LK
Sbjct: 6 SSFDQHCYKVFEPV-KNWTEAEEICMQQHKGSRLASIHSSE--EEAFVSKLA---SKALK 59
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDG-GRGWLWND 201
+WIG +P W+W D +W C V+ W
Sbjct: 60 FTSMWIGLN-NPWKD-CKWEWSDNARFDYKAW--------KRRPYCTVMVVKPDRIFWFT 109
Query: 202 VGCKLDYLHWICQ 214
GC+ + ++C+
Sbjct: 110 RGCE-KSVSFVCK 121
>1fm5_A Early activation antigen CD69; C-type lectin-like domain, natural
killer cell receptor, lectin, C-type lectin, immune
system; 2.27A {Homo sapiens} SCOP: d.169.1.1
Length = 199
Score = 67.3 bits (164), Expect = 5e-13
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 22/128 (17%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
+ R CY + K S+ A++ C G L I + ++ K
Sbjct: 90 VGYQRKCYFISTVK-RSWTSAQNACSEHGATLAV----IDSEK---DMNFLKRYAGREEH 141
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKL 206
W+G +K+PG WKW +G+ +W N G CV L + + C+
Sbjct: 142 WVGLKKEPG---HPWKWSNGKEFN--NW-----FNVTGSDKCVFLKNTE---VSSMECEK 188
Query: 207 DYLHWICQ 214
+ +WIC
Sbjct: 189 NL-YWICN 195
>1hq8_A NKG2-D; homodimer, CIS-proline, apoptosis; 1.95A {Mus musculus}
SCOP: d.169.1.1 PDB: 1jsk_A 1kcg_A*
Length = 123
Score = 63.5 bits (155), Expect = 2e-12
Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 27/133 (20%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITN----TFLLGELERRKDRLK 142
NCY+F ++ ++ +++ C + L+ I + FL +L
Sbjct: 11 ICHRNNCYQFFNEE-KTWNQSQASCLSQNSSLLK----IYSKEEQDFL---------KLV 56
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
W+G + P +W+W DG ++ + V +
Sbjct: 57 KSYHWMGLVQIP--ANGSWQWEDGSSLSYNQLTLVEIPK---GSCAVYGSSFK---AYTE 108
Query: 203 GCKLDYLHWICQH 215
C +IC
Sbjct: 109 DCANLN-TYICMK 120
>1mpu_A NKG2-D type II integral membrane protein; C-type lectin-like
domain, immune system; 2.50A {Homo sapiens} SCOP:
d.169.1.1 PDB: 1hyr_B
Length = 138
Score = 62.9 bits (153), Expect = 5e-12
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 27/133 (20%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITN----TFLLGELERRKDRLK 142
+ NCY+F + ++ ++++ C + L+ + + L +L
Sbjct: 26 ICYKNNCYQFFDES-KNWYESQASCMSQNASLLK----VYSKEDQDLL---------KLV 71
Query: 143 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDV 202
W+G P T +W+W DG +++ + +C +
Sbjct: 72 KSYHWMGLVHIP--TNGSWQWEDGSILSPNLLTIIEMQK----GDCALYASSFK--GYIE 123
Query: 203 GCKLDYLHWICQH 215
C +IC
Sbjct: 124 NCSTPN-TYICMQ 135
>3bdw_B NKG2-A/NKG2-B type II integral membrane protein; NK cells,
receptor, glycoprotein, lectin, signal-A transmembrane,
immune system receptor; 2.50A {Homo sapiens} PDB: 3cdg_K
3cii_H
Length = 120
Score = 62.0 bits (151), Expect = 6e-12
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 21/129 (16%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
++ +CY ++ ++ ++ C + L+ I N + L
Sbjct: 12 ITYSNSCYYIGKER-RTWEESLLACTSKNSSLLS----IDNEEEMKFLSIISPSS----- 61
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKL 206
WIG ++ + W ++G KD N E NC VL R C
Sbjct: 62 WIGVFRNS--SHHPWVTMNGLAFK--HEIKDSDN---AELNCAVLQVNR---LKSAQCGS 111
Query: 207 DYLHWICQH 215
+ C+H
Sbjct: 112 SI-IYHCKH 119
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 66.8 bits (163), Expect = 7e-12
Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 24/158 (15%)
Query: 338 CAEPPQISGGIVTTSGRRTGS---VATYSCEPGFILF-GSNELK-----CGLGGDWSGKA 388
C +P + + + + +C+ G+ L G+ L C G W
Sbjct: 3 CPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAM 62
Query: 389 PTCKYVDCGSPANIDNGH--YSLLNGTTTHGSVAEYTCDDDY-------WLEAGAMRRQV 439
P CK DCG P N+ NG Y+ G T+ + +Y C + Y
Sbjct: 63 PRCKIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYT 122
Query: 440 CMRDGKWSGDTPSCELITC------PEPEVPKGGYVVG 471
C G W + ++ C P V + ++G
Sbjct: 123 CTAQGIWKNEQKGEKIPRCLPVCGKPVNPVEQRQQIIG 160
Score = 49.8 bits (119), Expect = 1e-06
Identities = 32/133 (24%), Positives = 46/133 (34%), Gaps = 27/133 (20%)
Query: 243 ISYACPEGNMLVG------SATRTC-KEGFWTGVAPTCQYVDCGKLEHIEHGTVTLETTR 295
C +G L+ S T C +G W P C+ DCG+ ++ +G TT
Sbjct: 28 FIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTTM 87
Query: 296 --TTHGAVAIYACHENY---------TLIGETRRVCGDGGKWNGTE-----PQCLFDWC- 338
T+ A Y CHE Y + C G W + P+CL C
Sbjct: 88 GVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCLPV-CG 146
Query: 339 --AEPPQISGGIV 349
P + I+
Sbjct: 147 KPVNPVEQRQQII 159
Score = 45.2 bits (107), Expect = 4e-05
Identities = 29/151 (19%), Positives = 45/151 (29%), Gaps = 26/151 (17%)
Query: 276 VDCGKLEHIEHGTVTL-ETTRTTHGAVAIYACHENYTLIGETR------RVCGDGGKWNG 328
+ C + + ++ T+ + I C + Y LI + VC D G W+
Sbjct: 1 IKCPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHR 60
Query: 329 TEPQCLFDWCAEPPQISGGIVT----TSGRRTGSVATYSCEPGF---------ILFGSNE 375
P+C C +P + G + Y C +
Sbjct: 61 AMPRCKIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGV 120
Query: 376 LKCGLGGDWSGKA-----PTCKYVDCGSPAN 401
C G W + P C V CG P N
Sbjct: 121 YTCTAQGIWKNEQKGEKIPRCLPV-CGKPVN 150
>3rs1_A C-type lectin domain family 2 member I; C-type lectin-like, ligand
of NK receptor, natural killer CE receptors, surface of
activated T lymphocytes; 1.94A {Mus musculus}
Length = 122
Score = 61.3 bits (149), Expect = 1e-11
Identities = 24/128 (18%), Positives = 37/128 (28%), Gaps = 21/128 (16%)
Query: 87 TSFDRNCYEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLLGELERRKDRLKTLLV 146
T C+ F+ ++ A++ C A L N EL K
Sbjct: 13 TGVGNKCFYFSGYP-RNWTFAQAFCMAQEAQLAR----FDNE---EELIFLKRFKGDFDS 64
Query: 147 WIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKL 206
WIG ++ WKW + + N G L R + +
Sbjct: 65 WIGLHRESSE--HPWKWTNN--TEYNNM-----NPILGVGRYAYLSSDR---ISSSRSYI 112
Query: 207 DYLHWICQ 214
+ WIC
Sbjct: 113 NR-MWICS 119
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 55.0 bits (132), Expect = 3e-08
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 338 CAEPPQISGGIVTTSG--RRTGSVATYSCEPGFIL------FGSNELKCGLGGDWSGKAP 389
C E G + S SC+ G+ + + +++C G WS K P
Sbjct: 282 CPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIP 341
Query: 390 TCKYVDCGSPANIDNG 405
TCK + + + +
Sbjct: 342 TCKKNEIDLESELKSE 357
Score = 48.4 bits (115), Expect = 4e-06
Identities = 28/153 (18%), Positives = 44/153 (28%), Gaps = 20/153 (13%)
Query: 327 NGTEPQCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKCGLGGDWSG 386
+ E C +D+ +I G G G A P I S+ + D SG
Sbjct: 217 DHPEVPCPYDYI----KIKVG-PKVLGPFCGEKA-----PEPISTQSHSVLILFHSDNSG 266
Query: 387 KAP------TCKYVDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQ-- 438
+ +C +G +CD Y + +
Sbjct: 267 ENRGWRLSYRAAGNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTF 326
Query: 439 --VCMRDGKWSGDTPSCELITCPEPEVPKGGYV 469
C++DG WS P+C+ K V
Sbjct: 327 QIECLKDGTWSNKIPTCKKNEIDLESELKSEQV 359
Score = 45.4 bits (107), Expect = 4e-05
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Query: 217 PANCGSPDRHLNTTFVGTV-NTKLGSTISYACPEGNMLVG------SATRTC-KEGFWTG 268
C ++ + + +C G ++ + C K+G W+
Sbjct: 279 GNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSN 338
Query: 269 VAPTCQYVDCGKLEHIEHGTVT 290
PTC+ + ++ VT
Sbjct: 339 KIPTCKKNEIDLESELKSEQVT 360
Score = 44.6 bits (105), Expect = 7e-05
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 278 CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRR------VCGDGGKWNGTEP 331
C +L+ HG + + + +C Y ++ + C G W+ P
Sbjct: 282 CPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIP 341
Query: 332 QCLFDWCAEPPQISGGIVT 350
C + ++ VT
Sbjct: 342 TCKKNEIDLESELKSEQVT 360
Score = 32.3 bits (73), Expect = 0.41
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 456 ITCPEPEVPKGGYVV--GYDLNVHSTLEFHCEPGHLLVGQ------ASLKCTRQGDWDNM 507
CPE + P G + + C+ G+ ++ ++C + G W N
Sbjct: 280 NECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNK 339
Query: 508 SP 509
P
Sbjct: 340 IP 341
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 50.9 bits (122), Expect = 6e-07
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 394 VDCGSPANIDNGHYSLLNGTTTHGSVAEYTCDDDYW-LEAGAMRRQVCMRDGKWSGDTPS 452
+DCG P +I+NG +T GSV YTC++ Y+ +E G C +G W +
Sbjct: 2 LDCGIPESIENGKVE-DPESTLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVNEVLG 60
Query: 453 CELITC------PEPEVPKGGYVVG 471
EL C P + ++G
Sbjct: 61 PELPKCVPVCGVPREPFEEKQRIIG 85
Score = 42.8 bits (101), Expect = 2e-04
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 276 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLI---GETRRVCGDGGKWNGTE-- 330
+DCG E IE+G V + T G+V Y C E Y + G C G W
Sbjct: 2 LDCGIPESIENGKVE-DPESTLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVNEVLG 60
Query: 331 ---PQCL 334
P+C+
Sbjct: 61 PELPKCV 67
Score = 42.0 bits (99), Expect = 4e-04
Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 338 CAEPPQISGGIVTTSGRRT-GSVATYSCEPGFILF---GSNELKCGLGGDWSGKA----- 388
C P I G V GSV Y+CE + G E C G W +
Sbjct: 4 CGIPESIENGKVEDPESTLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVNEVLGPEL 63
Query: 389 PTCKYVDCGSPAN 401
P C V CG P
Sbjct: 64 PKCVPV-CGVPRE 75
Score = 35.5 bits (82), Expect = 0.049
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 219 NCGSPDRHLNTTFVGTVNTKLGSTISYACPEG--NMLV-GSATRTC-KEGFWTGVA---- 270
+CG P+ N +T GS I Y C E M G C G W
Sbjct: 3 DCGIPESIENGKVEDPESTLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVNEVLGPE 62
Query: 271 -PTCQYVDCGK 280
P C V CG
Sbjct: 63 LPKCVPV-CGV 72
Score = 30.9 bits (70), Expect = 1.3
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 456 ITCPEPEVPKGGYVVGYDLNVH-STLEFHCEPGHLLV---GQASLKCTRQGDWDN 506
+ C PE + G V + + S + + CE + + G C G W N
Sbjct: 2 LDCGIPESIENGKVEDPESTLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVN 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 1e-06
Identities = 91/609 (14%), Positives = 168/609 (27%), Gaps = 225/609 (36%)
Query: 129 FLLGELERRKDRLKTLLV---------WIGAQ-----KDPG------ITARTWKWVDGEV 168
L L +++ + V ++ + + P I R + D +V
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 169 VTK-------PSWG------KDQPNNYNGEQNCVVLDG----GRGWLWNDV------GCK 205
K P + +P V++DG G+ W+ DV CK
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKN------VLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 206 LDY-LHWICQHNPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEGNMLVGSATRTCKEG 264
+D+ + W+ N NC SP+ L ML +
Sbjct: 180 MDFKIFWL---NLKNCNSPETVLE-----------------------ML---------QK 204
Query: 265 FWTGVAPTCQYVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYT---LIGETRRVCG 321
+ P + +H + + + + + + + Y L+ V
Sbjct: 205 LLYQIDPN----WTSRSDHSSNIKLRIHSIQA---ELRRLLKSKPYENCLLV--LLNVQ- 254
Query: 322 DGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNELKCGLG 381
+ WN C +I ++TT R V + + L
Sbjct: 255 NAKAWNAFNLSC---------KI---LLTT---RFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 382 GDWSGKAPTCKYVDCGS---PANIDNGHYSLLNGTTTHGSVAEYTCDD----DYW----- 429
D K+ KY+DC P + + L +AE D D W
Sbjct: 300 PDEV-KSLLLKYLDCRPQDLPREVLTTNPRRL------SIIAESIRDGLATWDNWKHVNC 352
Query: 430 -------------LEAGAMRRQ-----VCMRDGK---------WSGDTPS-CELITCPEP 461
LE R+ V W S ++
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN--- 409
Query: 462 EV---------PKGGYVVGYDLNVHSTLEFHCEPG-----H-LLVGQASLKCTRQGDWDN 506
++ PK + + LE + H +V ++ T D D+
Sbjct: 410 KLHKYSLVEKQPKESTISIPSI----YLELKVKLENEYALHRSIVDHYNIPKTF--DSDD 463
Query: 507 MSPQFISFYFPPSETISAVSEAQTLGY-MISVGAG--VVLFLLILL--AIIYARLRKATP 561
+ P ++ YF +G+ + ++ + LF ++ L + ++R +
Sbjct: 464 LIPPYLDQYF-----------YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 562 VKNTE----NIEGAVRKEEQTAAVMSYASLSDGGGDNIYE-----------NVAENTYDN 606
N N ++ + Y + D YE + EN +
Sbjct: 513 AWNASGSILNTLQQLKFYKP------YICDN----DPKYERLVNAILDFLPKIEENLICS 562
Query: 607 PYETALAFA 615
Y L A
Sbjct: 563 KYTDLLRIA 571
Score = 42.5 bits (99), Expect = 5e-04
Identities = 32/251 (12%), Positives = 77/251 (30%), Gaps = 63/251 (25%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVTPQSKSVFIQLVGVEGSLSL 60
KD ++ S+ + + ++++ + L TL+ + + + + V
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL----SKQEEMVQKFVE------- 84
Query: 61 CEVEIFTTD-EFSTDRCASEKAASAEITSFDRNCYEFNIDK----GASFAD---ARSKC- 111
E+ + +F +E+ S Y D+ FA +R +
Sbjct: 85 ---EVLRINYKFLMSPIKTEQRQ----PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 112 ----------QASGGDLVHGFRGITNTFLLGELERRKDRLKTL---LVWI--GAQKDPG- 155
+ + L+ G G T++ ++ + + W+ P
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 156 ---ITARTWKWVDGEVVTKPSWGKDQPNNYNGEQ-------------NC-VVLDGGR-GW 197
+ + +D ++ + + Q NC +VL +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 198 LWN--DVGCKL 206
WN ++ CK+
Sbjct: 258 AWNAFNLSCKI 268
>1srz_A Gamma-aminobutyric acid type B receptor, subunit 1; GABA(B)
receptor, CIS-trans isomerization, CCP module, sushi
domain; NMR {Rattus norvegicus} SCOP: g.18.1.1 PDB:
1ss2_A
Length = 68
Score = 42.8 bits (100), Expect = 1e-05
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 330 EPQCLFDWCAEPPQISGGIVTTSG----RRTGSVATYSCEPGFILFGSNELKCGLGGDWS 385
E + + + G V +G G+ + C+P F L GS+ C G WS
Sbjct: 1 EAEFVRICSKSYLTLENGKVFLTGGDLPALDGARVEFRCDPDFHLVGSSRSVCSQ-GQWS 59
Query: 386 GKAPTCK 392
P C+
Sbjct: 60 TPKPHCQ 66
Score = 41.3 bits (96), Expect = 4e-05
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 240 GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQ 274
G+ + + C LVGS+ C +G W+ P CQ
Sbjct: 32 GARVEFRCDPDFHLVGSSRSVCSQGQWSTPKPHCQ 66
Score = 36.3 bits (83), Expect = 0.002
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 298 HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQC 333
GA + C ++ L+G +R VC G+W+ +P C
Sbjct: 31 DGARVEFRCDPDFHLVGSSRSVCSQ-GQWSTPKPHC 65
Score = 35.9 bits (82), Expect = 0.003
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 402 IDNGHYSLLNGTTT--HGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCE 454
++NG L G G+ E+ CD D+ L + R VC + G+WS P C+
Sbjct: 15 LENGKVFLTGGDLPALDGARVEFRCDPDFHLVGSS--RSVCSQ-GQWSTPKPHCQ 66
Score = 33.2 bits (75), Expect = 0.024
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 478 STLEFHCEPGHLLVGQASLKCTRQGDWDNMSPQ 510
+ +EF C+P LVG + C++ G W P
Sbjct: 33 ARVEFRCDPDFHLVGSSRSVCSQ-GQWSTPKPH 64
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 43.2 bits (102), Expect = 2e-04
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 15/92 (16%)
Query: 395 DCGSPANIDNGH--YSLLNGTTTHGSVAEYTCDDDY-------WLEAGAMRRQVCMRDGK 445
DCG P N+ NG Y+ G T+ + +Y C + Y C G
Sbjct: 1 DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGI 60
Query: 446 WSGDTPSCELITC------PEPEVPKGGYVVG 471
W + ++ C P V + ++G
Sbjct: 61 WKNEQKGEKIPRCLPVCGKPVNPVEQRQRIIG 92
Score = 33.6 bits (77), Expect = 0.17
Identities = 22/92 (23%), Positives = 31/92 (33%), Gaps = 20/92 (21%)
Query: 277 DCGKLEHIEHGTVTLETT--RTTHGAVAIYACHENY---------TLIGETRRVCGDGGK 325
DCG+ ++ +G TT T+ A Y CHE Y + C G
Sbjct: 1 DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGI 60
Query: 326 WNG-----TEPQCLFDWC---AEPPQISGGIV 349
W P+CL C P + I+
Sbjct: 61 WKNEQKGEKIPRCLPV-CGKPVNPVEQRQRII 91
>2b5i_D Interleukin-2 receptor alpha chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 3nfp_I
3iu3_I 1z92_B 2erj_A*
Length = 217
Score = 38.0 bits (87), Expect = 0.004
Identities = 35/205 (17%), Positives = 50/205 (24%), Gaps = 40/205 (19%)
Query: 340 EPPQISGGIVTTSGRRTGSVATYSCEPGF--ILFGSNELKCGLGGDWSGKAPTCKYVDCG 397
+PP+I + G++ C+ GF I GS + C S C+ C
Sbjct: 6 DPPEIPHATFKAMAYKEGTMLNCECKRGFRRIKSGSLYMLCTGNSSHSSWDNQCQ---CT 62
Query: 398 SPANIDNGHYSLLNGTTTHGSVAEYTCDDDYWLEAGAMRRQVCMRDGKWSGDTPSCELIT 457
S A + S P +
Sbjct: 63 SSATRQTTKQVTPQPEEQ----------------------KERKTTEMQSPMQPVDQASL 100
Query: 458 ---CPEP-EVPKGGYVVGYDLNVHSTLEFHCEPGH--LLVGQASLKCTR---QGDWDNMS 508
C EP Y V + + C G+ L G A C + W
Sbjct: 101 PGHCREPPPWENEATERIYHFVVGQMVYYQCVQGYRALHRGPAESVCKMTHGKTRWTQPQ 160
Query: 509 PQFIS----FYFPPSETISAVSEAQ 529
FP E A E +
Sbjct: 161 LICTGEMETSQFPGEEKPQASPEGR 185
Score = 31.8 bits (71), Expect = 0.44
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 216 NPANCGSPDRHLNTTFVGTVNTKLGSTISYACPEG--NMLVGSATRTCK----EGFWTGV 269
P +C P N + +G + Y C +G + G A CK + WT
Sbjct: 100 LPGHCREPPPWENEATERIYHFVVGQMVYYQCVQGYRALHRGPAESVCKMTHGKTRWTQP 159
Query: 270 APTCQ 274
C
Sbjct: 160 QLICT 164
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.010
Identities = 40/232 (17%), Positives = 73/232 (31%), Gaps = 79/232 (34%)
Query: 1 KDN-KEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVTPQSKSVFIQLVGVEGSLS 59
+N + GG K + N+ + +I +++ +F ++ E S S
Sbjct: 1666 INNPVNLTIHFGGEK---GKRIRENYSAMIFETIVD----GKLKTEKIFKEIN--EHSTS 1716
Query: 60 LC----EVEIFTTDEFSTDRC--ASEKAASAEITSFDRNCYEFNIDKGASFA-------D 106
+ + T +F T EKAA ++ S + I A+FA
Sbjct: 1717 YTFRSEKGLLSAT-QF-TQPALTLMEKAAFEDLKS------KGLIPADATFAGHSLGEYA 1768
Query: 107 ARSKCQASGG--------DLVHGFRGITNTFLLGELERRKDRLKTLLVWIGAQKDPG--- 155
A + + ++V +RG+T + E + + + +PG
Sbjct: 1769 ALA---SLADVMSIESLVEVVF-YRGMTMQVAVPRDELGRSNYGMIAI------NPGRVA 1818
Query: 156 --------------ITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDG 193
+ RT G +V + NYN E V G
Sbjct: 1819 ASFSQEALQYVVERVGKRT-----GWLV--------EIVNYNVENQQYVAAG 1857
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 35.8 bits (82), Expect = 0.030
Identities = 12/94 (12%), Positives = 24/94 (25%), Gaps = 11/94 (11%)
Query: 2 DNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVT--PQSKSVFIQLVGVEGSLS 59
DN + G+ + L + + + + + L + L
Sbjct: 72 DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131
Query: 60 LCEVEIFTTDEFSTDRCASEKAASAEITSFDRNC 93
L + + KA A I+ R
Sbjct: 132 LLDRD--------ACDTVRVKALFA-ISCLVREQ 156
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 35.7 bits (82), Expect = 0.038
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVT--PQSKSVFIQLVGVEGSL 58
++K+ + VG +K + L E T+ + ++ L L ++K+ + G L
Sbjct: 276 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 335
Query: 59 SLCEVEIFTTDEFSTDRCASEKAASA 84
V T + E
Sbjct: 336 ----VGTLTYRSQTNTLAIIESGGGI 357
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 35.6 bits (82), Expect = 0.044
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 2 DNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVT--PQSKSVFIQLVGVEGSLS 59
++K+ + VG +K + L E T+ + ++ L L ++K+ + G L
Sbjct: 161 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL- 219
Query: 60 LCEVEIFTTDEFSTDRCASEKAASA 84
V T + E
Sbjct: 220 ---VGTLTYRSQTNTLAIIESGGGI 241
Score = 31.0 bits (70), Expect = 1.3
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVTPQSKSVFIQLVGVEGS 57
++E + +G + + + L++S H+ + S L L+ + + GS
Sbjct: 295 PKDQEALWDMGAVSMLKN-LIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGS 350
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 33.5 bits (76), Expect = 0.23
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 2 DNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVTPQSKSVFIQLVGVEGSLSLC 61
D ++Y+L ++P+ L NSN + + TL L + K V +L
Sbjct: 206 DYRDYVLQCNAMEPILG-LFNSNKPSLIRTATWTLSNLC--RGKKPQPDWSVVSQALPTL 262
Query: 62 EVEIFTTD-EFSTDRCASEKAASAEITSFDRNCYEFNIDKGA 102
I++ D E D C A + ++ + + ID
Sbjct: 263 AKLIYSMDTETLVDAC----WAISYLSDGPQEAIQAVIDVRI 300
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 33.5 bits (76), Expect = 0.26
Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYL-VTPQSKSVFIQLVGVE 55
+++K IL+ GG + + +++ +E+ + + L L V +K ++ G++
Sbjct: 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ 363
Score = 33.1 bits (75), Expect = 0.33
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVTPQSKSVFIQLVGVEGSL 58
++ I GGI + + +L S + + ++ITTL L+ + V + G L
Sbjct: 224 REGLLAIFKSGGIPALVN-MLGSPVDSVLFHAITTLHNLL--LHQEGAKMAVRLAGGL 278
Score = 32.3 bits (73), Expect = 0.56
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSN-HEQTVLNSITTLMYLVT-PQSKSVFIQLVGVEGSL 58
NK + VGGI+ + +L + E +I L +L + Q + V + L
Sbjct: 431 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGL 490
Score = 29.2 bits (65), Expect = 5.3
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVTPQSKSVFIQ 50
NK I+ GG++ + L ++ V N + TL L +K ++
Sbjct: 350 SSNKPAIVEAGGMQALGL-HLTDPSQRLVQNCLWTLRNLSDAATKQEGME 398
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 33.0 bits (74), Expect = 0.35
Identities = 13/85 (15%), Positives = 24/85 (28%)
Query: 2 DNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVTPQSKSVFIQLVGVEGSLSLC 61
DNK I + G+ + LL + TL L + S + I +
Sbjct: 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEV 183
Query: 62 EVEIFTTDEFSTDRCASEKAASAEI 86
+ + + C +
Sbjct: 184 IIPHSGWEREPNEDCKPRHIEWESV 208
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 32.6 bits (74), Expect = 0.46
Identities = 11/55 (20%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 2 DNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYL-VTPQSKSVFIQLVGVE 55
++K IL+ GG + + +++ +E+ + + L L V +K ++ G++
Sbjct: 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ 227
Score = 31.1 bits (70), Expect = 1.3
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLV--TPQSKSVFIQLVGVE 55
++ I GGI + +L S + + +ITTL L+ +K G++
Sbjct: 88 REGLLAIFKSGGIPALVK-MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ 143
Score = 31.1 bits (70), Expect = 1.3
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 2 DNKEYILSVGGIKP-VTSLLLNSNHEQTVLNSITTLMYLVTPQSKSVFIQLVGVE 55
NK + VGGI+ V ++L + E +I L +L + ++ Q
Sbjct: 296 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350
Score = 29.9 bits (67), Expect = 2.8
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYL 39
NK I+ GG++ + L ++ V N + TL L
Sbjct: 214 SSNKPAIVEAGGMQALGL-HLTDPSQRLVQNCLWTLRNL 251
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 32.4 bits (74), Expect = 0.48
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLV--TPQSKSVFIQLVGVE 55
++ I GGI + +L S + + +ITTL L+ +K G++
Sbjct: 91 REGLLAIFKSGGIPALVK-MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ 146
Score = 32.1 bits (73), Expect = 0.53
Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYL-VTPQSKSVFIQLVGVE 55
+++K IL+ GG + + +++ +E+ + + L L V +K ++ G++
Sbjct: 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ 230
Score = 30.9 bits (70), Expect = 1.3
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVTPQSKSVFIQ 50
NK I+ GG++ + L ++ V N + TL L +K ++
Sbjct: 217 SSNKPAIVEAGGMQALGL-HLTDPSQRLVQNCLWTLRNLSDAATKQEGME 265
Score = 30.9 bits (70), Expect = 1.6
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSN-HEQTVLNSITTLMYLVTPQSKSVFIQLVGVE 55
NK + VGGI+ + +L + E +I L +L + ++ Q
Sbjct: 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 353
Score = 30.1 bits (68), Expect = 2.5
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 2 DNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVT--PQSKSVFIQLVGVE 55
K + GG++ + + LLN + + + + L L +SK + + G +
Sbjct: 134 GAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188
>2j1v_A Fucolectin-related protein; carbohydrate-binding protein,
carbohydrate binding protein; HET: NAG GAL FUC; 1.45A
{Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A*
2j1s_A*
Length = 151
Score = 31.2 bits (70), Expect = 0.52
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 27 QTVLNSITTLMYLVTPQSKSVFIQLVGVEGSLSLCEVEIFT 67
L+ + + ++ + ++L+ LSL EVE+F
Sbjct: 109 VNNLSGESVSLDFKEKGARYIKVKLLTSGVPLSLAEVEVFR 149
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 31.5 bits (71), Expect = 0.61
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 2 DNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVTPQSKSVFI 49
DNK + + G+ + +L + +T L L + +
Sbjct: 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM 132
>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin,
fucose, blood clotting, nicke; HET: FUC; 1.90A
{Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A*
Length = 153
Score = 30.7 bits (69), Expect = 0.78
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 47 VFIQLVGVEGSLSLCEVEIFTTD 69
V ++L LSL EVE+F +
Sbjct: 125 VKVELKTKNTPLSLAEVEVFRSA 147
>2j22_A Fucolectin-related protein; carbohydrate-binding protein,
carbohydrate binding protein; 1.8A {Streptococcus
pneumoniae}
Length = 148
Score = 30.3 bits (68), Expect = 0.91
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 47 VFIQLVGVEGSLSLCEVEIFT 67
V I L LSL EVE++T
Sbjct: 126 VRISLRSAGIPLSLAEVEVYT 146
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 30.7 bits (70), Expect = 1.2
Identities = 7/41 (17%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVT 41
+ + ++ G + + LL+S +EQ + ++ L + +
Sbjct: 170 NEQIQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIAS 209
Score = 28.0 bits (63), Expect = 8.1
Identities = 7/39 (17%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 1 KDNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYL 39
+ + ++ G + + LL+S +EQ + ++ L +
Sbjct: 128 NEQIQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNI 165
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME
TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D*
1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D*
2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D*
3ag1_D* 3ag2_D* ...
Length = 147
Score = 29.9 bits (67), Expect = 1.3
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 18/94 (19%)
Query: 493 QASLKCTRQGDWDNMSPQ------FISFYFPPSETISAVSEAQTL--GYMISVGAGVVLF 544
Q +LK + W ++S + F +E + +E +T+ M +G +L
Sbjct: 37 QKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLL 96
Query: 545 LLILLAIIYARLRKATPVKNTENIEGAVRKEEQT 578
+ + P+ +T E +QT
Sbjct: 97 IWE-------KHYVYGPIPHTFEEE---WVAKQT 120
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB:
1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B*
3ir7_B* 1y4z_B* 3egw_B*
Length = 512
Score = 30.8 bits (69), Expect = 1.4
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 145 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVG- 203
L AR + GE + K G + ++ GE + + D + +
Sbjct: 111 LHTAPEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKNFDNIQKAMYS 170
Query: 204 ----CKLDYLHWICQH--NPA 218
+ YL +C+H NPA
Sbjct: 171 QFENTFMMYLPRLCEHCLNPA 191
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo
sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Length = 96
Score = 28.6 bits (64), Expect = 1.5
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 105 ADARSKCQASGGDLVHGFRGITNTFLL 131
+DA SK G L F G N+F +
Sbjct: 4 SDA-SKVVTRGPGLSQAFVGQKNSFTV 29
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A
{Morone saxatilis}
Length = 293
Score = 30.4 bits (67), Expect = 1.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 45 KSVFIQLVGVEGSLSLCEVEIF 66
+ V I + G E L+LCEVE++
Sbjct: 267 RYVNIVIPGREEYLTLCEVEVY 288
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 30.2 bits (67), Expect = 2.5
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 2 DNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVT--PQSKSVFIQLVGVEGSLS 59
K+ + +GGI + LL S ++ + L LV +K + G+ ++S
Sbjct: 35 SAKQQVYQLGGICKLVD-LLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVS 93
Query: 60 L 60
L
Sbjct: 94 L 94
Score = 28.6 bits (63), Expect = 6.5
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 2 DNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVTPQSKSVFI 49
NK GI+ SLL + + + L L + +
Sbjct: 77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport,
complex IV, proton pumps, membrane prote; HET: TPO HEA
CHD PEK PGV DMU; 1.95A {Bos taurus}
Length = 169
Score = 29.2 bits (65), Expect = 2.6
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 493 QASLKCTRQGDWDNMSPQ------FISFYFPPSETISAVSEAQTLGYMISVGAGVVLFLL 546
Q +LK + W ++S + F +E + +E +T+ VGA +
Sbjct: 59 QKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTV-----VGAAMFFIGF 113
Query: 547 ILLAIIYARLRKATPVKNTENIEGAVRKEEQT 578
L +I+ + P+ +T E +QT
Sbjct: 114 TALLLIWEKHYVYGPIPHTFEEE---WVAKQT 142
>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 28.3 bits (63), Expect = 2.9
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 94 YEFNIDKGASFADARSKCQASGGDLVHGFRGITNTFLL 131
++ + + + + A G L G GI + F +
Sbjct: 8 FKVRVGEPGQAGNP-ALVSAYGTGLEGGTTGIQSEFFI 44
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding
protein, cytoskeleton, complex; 2.32A {Homo sapiens}
SCOP: b.1.18.10 PDB: 2aav_A
Length = 97
Score = 27.7 bits (62), Expect = 3.3
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 102 ASFADARSKCQASGGDLVHGFRGITNTFLL 131
+ + A G L HG TF +
Sbjct: 1 GAMVNC-GHVTAYGPGLTHGVVNKPATFTV 29
>4dlo_A Brain-specific angiogenesis inhibitor 3; GAIN domain, includes GPS
motif, autoproteolytic fold, extra signaling protein;
HET: NAG FUL; 2.30A {Homo sapiens}
Length = 382
Score = 29.1 bits (63), Expect = 4.2
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 10/66 (15%)
Query: 216 NPANCGSPDRHLNTTFVGTVN---TKLGSTISYACPEGNMLVGSATRTCK-----EGFWT 267
+ C +P ++ ++ T G CP G+ +R C FW
Sbjct: 9 SEQRCPAPYEICPEDYLMSMVWKRTPAGDLAFNQCPLN--ATGTTSRRCSLSLHGVAFWE 66
Query: 268 GVAPTC 273
+
Sbjct: 67 QPSFAR 72
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex,
phosphoprotein, disease mutation, immunoglobulin like,
zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB:
2brq_A* 2jf1_A 3isw_A
Length = 94
Score = 27.4 bits (61), Expect = 5.1
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 105 ADARSKCQASGGDLVHGFRGITNTFLL 131
A K +A G L G+ F +
Sbjct: 1 GGA-HKVRAGGPGLERAEAGVPAEFSI 26
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A
{Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Length = 288
Score = 28.4 bits (62), Expect = 6.7
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 102 ASFADARSKCQASGGDLVHGFRGITNTFLL 131
+ DA S+ + SG L G F++
Sbjct: 1 GAMGDA-SRVRVSGQGLHEGHTFEPAEFII 29
>4dlq_A Latrophilin-1; GAIN domain, includes the GPS motif, hormone binding
domain, autoproteolysis, A-latrotoxin, extracellular
domain; HET: NAG; 1.85A {Rattus norvegicus}
Length = 381
Score = 28.4 bits (61), Expect = 6.8
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 237 TKLGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYVDC 278
T+ G + CP+G G A+ C +C
Sbjct: 37 TQQGMLVERPCPKGT--RGIASFQCLPALGLWNPRGPDLSNC 76
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat
motif, de novo protein; 1.80A {Synthetic construct}
PDB: 4db9_A 4dba_A
Length = 210
Score = 27.6 bits (62), Expect = 9.4
Identities = 7/40 (17%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 2 DNKEYILSVGGIKPVTSLLLNSNHEQTVLNSITTLMYLVT 41
+ + ++ G + + LL +S +EQ + ++ L + +
Sbjct: 45 EQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIAS 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.431
Gapped
Lambda K H
0.267 0.0332 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,568,171
Number of extensions: 582884
Number of successful extensions: 2686
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1385
Number of HSP's successfully gapped: 319
Length of query: 618
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 519
Effective length of database: 3,937,614
Effective search space: 2043621666
Effective search space used: 2043621666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (28.0 bits)