BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18070
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 88/133 (66%), Gaps = 11/133 (8%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDIDRTI-- 61
T + FGN+GGPLVNLDGEVIG+N+MKVTAGISFAIP D EFL ++K+ I
Sbjct: 164 TDAAIDFGNAGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFLHRGEKKNSSSGISG 223
Query: 62 THKKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
+ ++YIG+ MLTL+ ++ +L+ R+ P D+ HGVLI +V+ SPA+ AG++P
Sbjct: 224 SQRRYIGVMMLTLSPSILAELQLREPSFP-DVQHGVLIHKVILGSPAH------RAGLRP 276
Query: 121 TSSRL-LGECLAQ 132
L +GE + Q
Sbjct: 277 GDVILAIGEQMVQ 289
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT-NYKRKDIDRTIT 62
T ++ +GNSGGPLVNLDGEVIGIN++KVTAGISFAIP D +FLT ++ R+ + IT
Sbjct: 163 TDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAIT 222
Query: 63 HKKYIGITMLTLNEKLIEQLRRDRHIPY-DLTHGVLIWRVMYNSPA 107
KKYIGI M++L ++L +DRH + D+ G I V+ ++PA
Sbjct: 223 KKKYIGIRMMSLTSSKAKEL-KDRHRDFPDVISGAYIIEVIPDTPA 267
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT-NYKRKDIDRTIT 62
T ++ +GN+GGPLVNLDGEVIGIN++KVTAGISFAIP D +FLT ++ R+ + IT
Sbjct: 163 TDAIINYGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAIT 222
Query: 63 HKKYIGITMLTLNEKLIEQLRRDRHIPY-DLTHGVLIWRVMYNSPA 107
KKYIGI M++L ++L +DRH + D+ G I V+ ++PA
Sbjct: 223 KKKYIGIRMMSLTSSKAKEL-KDRHRDFPDVISGAYIIEVIPDTPA 267
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 40/47 (85%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT 50
T ++ +GNSGGPLVNLDGEVIGIN++KVTAGISFAIP D +FLT
Sbjct: 163 TDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLT 209
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 40/47 (85%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT 50
T ++ +GNSGGPLVNLDGEVIGIN++KVTAGISFAIP D +FLT
Sbjct: 180 TDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLT 226
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 40/47 (85%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT 50
T ++ +GN+GGPLVNLDGEVIGIN++KVTAGISFAIP D +FLT
Sbjct: 180 TDAIINYGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLT 226
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
T + GNSGG LVNL+GE+IGIN+ + GI FAIP + + N + ++
Sbjct: 201 TDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQMVE 256
Query: 59 RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR----- 113
+ +GI LN +L + ++ D G + +V+ NS A +
Sbjct: 257 YGQVKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 114 TSAGIKPTSS 123
TS KP SS
Sbjct: 311 TSLNGKPISS 320
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 36/145 (24%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
T + GNSGG LVN GE+IGIN+ ++ GI FAIPI+ KD+
Sbjct: 196 TDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV---------KDVA 246
Query: 59 RTI-----THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR 113
+ I H+ +GI + + L +L + P D G L+ +V NSPA
Sbjct: 247 QQIIKFGSIHRGLMGIFV----QHLTPELAQAMGYPEDF-QGALVSQVNPNSPAEL---- 297
Query: 114 TSAGIKPTSSRLLGECLAQYTTSKL 138
AG+K G+ + Q +K+
Sbjct: 298 --AGLK------AGDIITQINDTKI 314
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
T + GNSGG LVNL+GE+IGIN+ + GI FAIP + + N + ++
Sbjct: 201 TDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQMVE 256
Query: 59 RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR----- 113
+ +GI LN +L + ++ D G + +V+ NS A +
Sbjct: 257 YGQVKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 114 TSAGIKPTSS 123
TS KP SS
Sbjct: 311 TSLNGKPISS 320
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 35/147 (23%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
T + GNSGG LVNL+GE+IGIN+ + GI FAIP + + N + ++
Sbjct: 201 TDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNX----VKNLTSQXVE 256
Query: 59 RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAY---------- 108
+ +GI LN +L + + D G + +V+ NS A
Sbjct: 257 YGQVKRGELGIXGTELNSELAKAXK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 109 ----------FIKFRTSAGIKPTSSRL 125
F R G P S+L
Sbjct: 311 TSLNGKPISSFAALRAQVGTXPVGSKL 337
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 36/145 (24%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
T + GNSGG LVN GE+IGIN+ ++ GI FAIPI+ KD+
Sbjct: 196 TDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV---------KDVA 246
Query: 59 RTI-----THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR 113
+ I H+ +GI + + L +L + P D G L+ +V NSPA
Sbjct: 247 QQIIKFGSIHRGLMGIFV----QHLTPELAQAMGYPEDF-QGALVSQVNPNSPAEL---- 297
Query: 114 TSAGIKPTSSRLLGECLAQYTTSKL 138
AG+K G+ + Q +K+
Sbjct: 298 --AGLK------AGDIITQINDTKI 314
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 36/145 (24%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
T + GNSGG LVN GE+IGIN+ ++ GI FAIPI+ KD+
Sbjct: 196 TDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV---------KDVA 246
Query: 59 RTI-----THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR 113
+ I H+ +GI + + L +L + P D G L+ +V NSPA
Sbjct: 247 QQIIKFGSIHRGLMGIFV----QHLTPELAQAMGYPEDF-QGALVSQVNPNSPAEL---- 297
Query: 114 TSAGIKPTSSRLLGECLAQYTTSKL 138
AG+K G+ + Q +K+
Sbjct: 298 --AGLK------AGDIITQINDTKI 314
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
T + GN+GG LVNL+GE+IGIN+ + GI FAIP + + N + ++
Sbjct: 201 TDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQMVE 256
Query: 59 RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR----- 113
+ +GI LN +L + ++ D G + +V+ NS A +
Sbjct: 257 YGQVKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 114 TSAGIKPTSS 123
TS KP SS
Sbjct: 311 TSLNGKPISS 320
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
T + GN+GG LVNL+GE+IGIN+ + GI FAIP + + N + ++
Sbjct: 201 TDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQMVE 256
Query: 59 RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR----- 113
+ +GI LN +L + ++ D G + +V+ NS A +
Sbjct: 257 YGQVKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 114 TSAGIKPTSS 123
TS KP SS
Sbjct: 311 TSLNGKPISS 320
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 35/147 (23%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
T + GN+GG LVNL+GE+IGIN+ + GI FAIP + + N + ++
Sbjct: 201 TDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNX----VKNLTSQXVE 256
Query: 59 RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAY---------- 108
+ +GI LN +L + + D G + +V+ NS A
Sbjct: 257 YGQVKRGELGIXGTELNSELAKAXK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 109 ----------FIKFRTSAGIKPTSSRL 125
F R G P S+L
Sbjct: 311 TSLNGKPISSFAALRAQVGTXPVGSKL 337
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 35/147 (23%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
T + GN+GG LVNL+GE+IGIN+ + GI FAIP + + N + ++
Sbjct: 201 TDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNX----VKNLTSQXVE 256
Query: 59 RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAY---------- 108
+ +GI LN +L + + D G + +V+ NS A
Sbjct: 257 YGQVKRGELGIXGTELNSELAKAXK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 109 ----------FIKFRTSAGIKPTSSRL 125
F R G P S+L
Sbjct: 311 TSLNGKPISSFAALRAQVGTXPVGSKL 337
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
T + GN+GG LVNL+GE+IGIN+ + GI FAIP + + N + ++
Sbjct: 201 TDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQMVE 256
Query: 59 RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR----- 113
+ +GI LN +L + ++ D G + +V+ NS A +
Sbjct: 257 YGQVKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 114 TSAGIKPTSS 123
TS KP SS
Sbjct: 311 TSLNGKPISS 320
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 36/145 (24%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
T + GN+GG LVN GE+IGIN+ ++ GI FAIPI+ KD+
Sbjct: 196 TDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV---------KDVA 246
Query: 59 RTI-----THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR 113
+ I H+ +GI + + L +L + P D G L+ +V NSPA
Sbjct: 247 QQIIKFGSIHRGLMGIFV----QHLTPELAQAMGYPEDF-QGALVSQVNPNSPAEL---- 297
Query: 114 TSAGIKPTSSRLLGECLAQYTTSKL 138
AG+K G+ + Q +K+
Sbjct: 298 --AGLK------AGDIITQINDTKI 314
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 16/74 (21%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKV----TAGISFAIPIDYAIEFLTNYKRKDIDR 59
T + GNSGGPL+N+ GEVIGIN+ V + FAIPI+ +FL D
Sbjct: 174 TDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFL--------DT 225
Query: 60 TITHKK----YIGI 69
+T KK Y+G+
Sbjct: 226 ILTQKKVEKAYLGV 239
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 9/71 (12%)
Query: 64 KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTS 122
++YIG+ MLTL+ ++ +L+ R+ P D+ HGVLI +V+ SPA+ AG++P
Sbjct: 5 RRYIGVMMLTLSPSILAELQLREPSFP-DVQHGVLIHKVILGSPAH------RAGLRPGD 57
Query: 123 SRL-LGECLAQ 132
L +GE + Q
Sbjct: 58 VILAIGEQMVQ 68
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 11 GNSGGPLVNLDGEVIGIN----SMKVTAGISFAIPIDYAIEFLTNYKRKDIDRTITHKKY 66
GNSGGP N GE IG+ + T I + IP FLT+Y+R + KY
Sbjct: 198 GNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYER--------NGKY 249
Query: 67 IGITMLTLNEKLIEQ--LRRDRHIPYDLTHGVLIWRVMYNSPA 107
G L + + +E LR +P + GVL+ RV S A
Sbjct: 250 TGYPCLGVLLQKLENPALRECLKVPTN--EGVLVRRVEPTSDA 290
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Query: 11 GNSGGPLVNLDGEVIGINSM-----KVTAGISFAIPIDYA 45
GNSGG L+NL+GE+IGIN+ + GI FAIP + A
Sbjct: 185 GNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMA 224
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Query: 11 GNSGGPLVNLDGEVIGINSM-----KVTAGISFAIPIDYA 45
GNSGG L+NL+GE+IGIN+ + GI FAIP + A
Sbjct: 185 GNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMA 224
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Query: 11 GNSGGPLVNLDGEVIGINSM-----KVTAGISFAIPIDYA 45
GN+GG L+NL+GE+IGIN+ + GI FAIP + A
Sbjct: 185 GNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMA 224
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Query: 8 VKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDIDR 59
+ GNSGG LVN GE++GIN++ + GI FAIP A + + R R
Sbjct: 155 INHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD--GR 212
Query: 60 TITHKKYIGI 69
I + YIGI
Sbjct: 213 VI--RGYIGI 220
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Query: 8 VKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDIDR 59
+ GNSGG LVN GE++GIN++ + GI FAIP A + + R R
Sbjct: 160 INHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD--GR 217
Query: 60 TITHKKYIGI 69
I + YIGI
Sbjct: 218 VI--RGYIGI 225
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM-----KVTAGISFAIPID 43
T + GNSGGPL++ G +IGIN+ ++G+ F+IP+D
Sbjct: 171 TDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVD 215
>pdb|2YTW|A Chain A, Solution Structure Of The Pdz-Domain Of Human Protease
Htra 1 Precursor
Length = 118
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 59 RTITHKKYIGITMLTLNEKLIEQLRRDRHIPY-DLTHGVLIWRVMYNSPA 107
+ IT KKYIGI M++L ++L +DRH + D+ G I V+ ++PA
Sbjct: 13 KAITKKKYIGIRMMSLTSSKAKEL-KDRHRDFPDVISGAYIIEVIPDTPA 61
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFL 49
T + GNSGG LVN GE++GIN++ + GI FAIP A + +
Sbjct: 177 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 230
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFL 49
T + GNSGG LVN GE++GIN++ + GI FAIP A + +
Sbjct: 167 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 220
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFL 49
T + GNSGG LVN GE++GIN++ + GI FAIP A + +
Sbjct: 179 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 232
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 24/116 (20%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVT------------AGISFAIPIDY----AIE 47
T + GNSGG LVN + +++G+NS T G+ FAIP+D A E
Sbjct: 160 TDAAINPGNSGGALVNXNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADE 219
Query: 48 FLTNYKRK--DIDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRV 101
++ K + +T+ K TL K++E + + GV++ +V
Sbjct: 220 LISTGKASHASLGVQVTNDKD------TLGAKIVEVVAGGAAANAGVPKGVVVTKV 269
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRK 55
T + GNSGG LVN GE++GIN++ + GI FAIP A + + R
Sbjct: 179 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 238
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRK 55
T + GNSGG LVN GE++GIN++ + GI FAIP A + + R
Sbjct: 179 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 238
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFL 49
T + GNSGG LVN GE++GIN++ + GI FAIP A + +
Sbjct: 177 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 230
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFL 49
T + GNSGG LVN GE++GIN++ + GI FAIP A + +
Sbjct: 177 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 230
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 8 VKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFL 49
+ GNSGG LVN GE++GIN++ + GI FAIP A + +
Sbjct: 155 INHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 204
>pdb|2L97|A Chain A, Solution Structure Of Htra Pdz Domain From Streptococcus
Pneumoniae
Length = 134
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 35 GISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTH 94
G+ FAIP + AI + ++ + +T + +GI M+ L+ +RR +IP ++T
Sbjct: 3 GLGFAIPANDAINIIEQLEK---NGKVT-RPALGIQMVNLSNVSTSDIRR-LNIPSNVTS 57
Query: 95 GVLIWRVMYNSPA 107
GV++ V N PA
Sbjct: 58 GVIVRSVQSNMPA 70
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRK 55
T + GNSGG LVN GE+ GIN++ + GI FAIP A + R
Sbjct: 151 TDASINHGNSGGALVNSLGELXGINTLSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRD 210
Query: 56 DIDRTITHKKYIGI 69
R I + YIGI
Sbjct: 211 --GRVI--RGYIGI 220
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFL 49
T + GNSGG LVN GE++GIN++ + GI FAIP A + +
Sbjct: 177 TDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 230
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFL 49
T + GNSGG LVN GE++GIN++ + GI FAIP A + +
Sbjct: 177 TDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 230
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFL 49
T + GNSGG LVN GE++GIN++ + GI FAIP A + +
Sbjct: 177 TDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 230
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 8 VKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDIDR 59
+ GN GG LVN GE++GIN++ + GI FAIP A + + R R
Sbjct: 181 INPGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD--GR 238
Query: 60 TITHKKYIGI 69
I + YIGI
Sbjct: 239 VI--RGYIGI 246
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEF 48
T + GNSGG LVN GE+ GIN++ + GI FAIP A +
Sbjct: 179 TDASINHGNSGGALVNSLGELXGINTLSFDKSNDGETPEGIGFAIPFQLATKI 231
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFL 49
T + GN GG LVN GE++GIN++ + GI FAIP A + +
Sbjct: 179 TDASINHGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 232
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFL 49
T + GN GG LVN GE++GIN++ + GI FAIP A + +
Sbjct: 177 TDASINHGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 230
>pdb|2JOA|A Chain A, Htra1 Bound To An Optimized Peptide: Nmr Assignment Of Pdz
Domain And Ligand Resonances
Length = 105
Score = 32.7 bits (73), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 64 KKYIGITMLTLNEKLIEQLRRDRHIPY-DLTHGVLIWRVMYNSPA 107
KKYIGI M++L ++L +DRH + D+ G I V+ ++PA
Sbjct: 5 KKYIGIRMMSLTSSKAKEL-KDRHRDFPDVISGAYIIEVIPDTPA 48
>pdb|3CNQ|P Chain P, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|P Chain P, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|P Chain P, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 80
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 65 KYIGITMLTLNEKLIEQLRRDRHIPY 90
KY+ TLNEK +E+L++D + Y
Sbjct: 41 KYVDAASATLNEKAVEELKKDPSVAY 66
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 19/20 (95%)
Query: 8 VKFGNSGGPLVNLDGEVIGI 27
V+ G+SGGPL++L+G+V+G+
Sbjct: 178 VEQGDSGGPLIDLNGQVLGV 197
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 19/20 (95%)
Query: 8 VKFGNSGGPLVNLDGEVIGI 27
V+ G+SGGPL++L+G+V+G+
Sbjct: 160 VEQGDSGGPLIDLNGQVLGV 179
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 64 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPA 107
K++IGI M T+ L+++L+ +++ G+ + V NSP+
Sbjct: 5 KRFIGIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPS 48
>pdb|1SPB|P Chain P, Subtilisin Bpn' Prosegment (77 Residues) Complexed With
A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph
4.6. Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 78
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 65 KYIGITMLTLNEKLIEQLRRDRHIPY 90
KY+ TLNEK +++L++D + Y
Sbjct: 43 KYVDAASATLNEKAVKELKKDPSVAY 68
>pdb|3LT3|A Chain A, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
pdb|3LT3|B Chain B, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
Length = 217
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 19/20 (95%)
Query: 8 VKFGNSGGPLVNLDGEVIGI 27
V+ G++GGPL++L+G+V+G+
Sbjct: 158 VEQGDAGGPLIDLNGQVLGV 177
>pdb|2RE7|A Chain A, Crystal Structure Of A Pyridoxamine 5'-Phosphate Oxidase
Related Protein (Psyc_0186) From Psychrobacter Arcticus
273-4 At 2.50 A Resolution
Length = 134
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 53 KRKDIDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKF 112
K D+ + I IG+T T +EK + D +P D +W +Y+ A+F
Sbjct: 55 KTSDVVKDIQDDARIGLTYATQDEKNYVSISGDAELPTDKAKLDELWSPVYS--AFFANG 112
Query: 113 RTSAGIK 119
+ A I+
Sbjct: 113 KEDANIQ 119
>pdb|2WV9|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Murray
Valley Encephalitis Virus
Length = 673
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVTAG 35
G SG P+VN +GE+IG+ V G
Sbjct: 187 GTSGSPIVNSNGEIIGLYGNGVILG 211
>pdb|1SCJ|B Chain B, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 71
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 11/50 (22%)
Query: 49 LTNYKRKDIDRTITHK--------KYIGITMLTLNEKLIEQLRRDRHIPY 90
+++ K+KD+ I+ K KY+ TL+EK +++L++D + Y
Sbjct: 15 MSSAKKKDV---ISQKGGKVEKQFKYVNAAAATLDEKAVKELKKDPSVAY 61
>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1EXF|A Chain A, Exfoliative Toxin A
pdb|1DUA|A Chain A, Crystal Structure Of Exfoliative Toxin A
Length = 242
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVT 33
GNSG + N +GE++GI+S KV+
Sbjct: 193 GNSGSGIFNSNGELVGIHSSKVS 215
>pdb|1QTF|A Chain A, Crystal Structure Of Exfoliative Toxin B
Length = 246
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVTAGISFAIPI 42
GNSG + NL GE+IGI+S K G +PI
Sbjct: 184 GNSGSGIFNLKGELIGIHSGK---GGQHNLPI 212
>pdb|1DT2|A Chain A, Crystal Structure Of Exfoliative Toxin B
Length = 245
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVTAGISFAIPI 42
GNSG + NL GE+IGI+S K G +PI
Sbjct: 183 GNSGSGIFNLKGELIGIHSGK---GGQHNLPI 211
>pdb|4I33|A Chain A, Crystal Structure Of Hcv Ns34A R155K PROTEASE COMPLEXED
WITH COMPOUND 4
pdb|4I33|B Chain B, Crystal Structure Of Hcv Ns34A R155K PROTEASE COMPLEXED
WITH COMPOUND 4
Length = 187
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 11 GNSGGPLVNLDGEVIGINSMKV-TAGISFA---IPIDYAIEFLTNYKRK 55
G+SGGPL+ G V+GI V T G++ A IP++ + K+K
Sbjct: 138 GSSGGPLLCPSGHVVGIFKAAVCTRGVAKAVDFIPVESMETTMRASKKK 186
>pdb|4I32|A Chain A, Crystal Structure Of Hcv Ns34A D168V PROTEASE COMPLEXED
WITH COMPOUND 4
pdb|4I32|B Chain B, Crystal Structure Of Hcv Ns34A D168V PROTEASE COMPLEXED
WITH COMPOUND 4
Length = 187
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 11 GNSGGPLVNLDGEVIGINSMKV-TAGISFA---IPIDYAIEFLTNYKRK 55
G+SGGPL+ G V+GI V T G++ A IP++ + K+K
Sbjct: 138 GSSGGPLLCPSGHVVGIFRAAVCTRGVAKAVVFIPVESMETTMRASKKK 186
>pdb|4I31|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
COMPOUND 4
pdb|4I31|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
COMPOUND 4
Length = 187
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 11 GNSGGPLVNLDGEVIGINSMKV-TAGISFA---IPIDYAIEFLTNYKRK 55
G+SGGPL+ G V+GI V T G++ A IP++ + K+K
Sbjct: 138 GSSGGPLLCPSGHVVGIFRAAVCTRGVAKAVDFIPVESMETTMRASKKK 186
>pdb|3P8N|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
BI 201335
pdb|3P8N|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
BI 201335
pdb|3P8O|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
DES-Bromine Analogue Of Bi 201335
pdb|3P8O|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
DES-Bromine Analogue Of Bi 201335
Length = 186
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 11 GNSGGPLVNLDGEVIGINSMKV-TAGISFA---IPIDYAIEFLTNYKRK 55
G+SGGPL+ G V+GI V T G++ A IP++ + K+K
Sbjct: 137 GSSGGPLLCPSGHVVGIFRAAVCTRGVAKAVDFIPVESMETTMRASKKK 185
>pdb|1DUE|A Chain A, Crystal Structure Of Exfoliative Toxin A S195a Mutant
Length = 242
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVT 33
GN+G + N +GE++GI+S KV+
Sbjct: 193 GNAGSGIFNSNGELVGIHSSKVS 215
>pdb|2BOA|A Chain A, Human Procarboxypeptidase A4.
pdb|2BOA|B Chain B, Human Procarboxypeptidase A4
Length = 404
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 91 DLTHGVLIWRVMYNSPAYFIKFRTSAGI-KPT--------SSRLLGECLAQYTTSKLVVW 141
DL V I N P Y +KF T G+ +P S + + A +T K+V
Sbjct: 125 DLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQATAIWTARKIVSD 184
Query: 142 SINHPSITC 150
P+IT
Sbjct: 185 YQRDPAITS 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,831,661
Number of Sequences: 62578
Number of extensions: 178846
Number of successful extensions: 736
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 77
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)