RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18070
(169 letters)
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 135 bits (342), Expect = 1e-39
Identities = 54/113 (47%), Positives = 75/113 (66%), Gaps = 8/113 (7%)
Query: 10 FGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKR--KDIDRTITHKKYI 67
FGN+GGPLVNLDGEVIG+N+MKVTAGISFAIP D EFL ++ + + ++YI
Sbjct: 170 FGNAGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYI 229
Query: 68 GITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
G+ MLTL+ ++ +L+ D+ HGVLI +V+ SPA+ AG++P
Sbjct: 230 GVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAH------RAGLRP 276
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 133 bits (336), Expect = 1e-38
Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 19/145 (13%)
Query: 10 FGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKD-IDRTITHKKYIG 68
+GN+GGPLVNLDGEVIGIN++KVTAGISFAIP D +FLT + + IT KKYIG
Sbjct: 169 YGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIG 228
Query: 69 ITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP-------- 120
I M++L ++L+ D+ G I V+ ++PA + G+K
Sbjct: 229 IRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAE------AGGLKENDVIISIN 282
Query: 121 ----TSSRLLGECLAQYTTSKLVVW 141
S+ + + + + +T +VV
Sbjct: 283 GQSVVSANDVSDVIKRESTLNMVVR 307
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo
sapiens} PDB: 3tjn_A 3nwu_A
Length = 231
Score = 85.1 bits (211), Expect = 5e-21
Identities = 32/45 (71%), Positives = 37/45 (82%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRK 55
GN+GGPLVNLDGEVIGIN++KVTAGISFAIP D +FLT +
Sbjct: 187 GNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDR 231
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 84.6 bits (210), Expect = 3e-20
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 34/127 (26%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
GNSGGPL++ G +IGIN+ + +G+ F+IP+D +D+ + K
Sbjct: 178 GNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTV--------GGIVDQLVRFGK 229
Query: 66 ----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPT 121
+GI ++ +EQL GVL+ + PA AG++ T
Sbjct: 230 VTRPILGIKFAP--DQSVEQLGVS---------GVLVLDAPPSGPA------GKAGLQST 272
Query: 122 SSRLLGE 128
G
Sbjct: 273 KRDGYGR 279
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 82.2 bits (204), Expect = 2e-19
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 32/122 (26%)
Query: 11 GNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDIDRTIT 62
GNSGG LVN GE++GIN++ + GI FAIP A K +D+ I
Sbjct: 163 GNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLA--------TKIMDKLIR 214
Query: 63 HKK----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGI 118
+ YIGI + + D+ G+++ V + PA +AGI
Sbjct: 215 DGRVIRGYIGIGGREIAPLHAQGGGIDQ------LQGIVVNEVSPDGPA------ANAGI 262
Query: 119 KP 120
+
Sbjct: 263 QV 264
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 82.4 bits (204), Expect = 3e-19
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 29/119 (24%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
GN+GG LVNL+GE+IGIN+ + GI FAIP + + + + + +
Sbjct: 208 GNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMV--------KNLTSQMVEYGQ 259
Query: 66 ----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
+GI LN +L + ++ D G + +V+ NS A AGIK
Sbjct: 260 VKRGELGIMGTELNSELAKAMKVDA------QRGAFVSQVLPNSSA------AKAGIKA 306
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 82.4 bits (204), Expect = 4e-19
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 28/119 (23%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
GNSGG LVN GE+IGIN+ ++ GI FAIPI+ + + I
Sbjct: 203 GNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV--------KDVAQQIIKFGS 254
Query: 66 ----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
+GI + L +L + + G L+ +V NSPA AG+K
Sbjct: 255 IHRGLMGIFVQHLTPELAQAMGYPED-----FQGALVSQVNPNSPA------ELAGLKA 302
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 80.8 bits (200), Expect = 6e-19
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 46/126 (36%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVTA------------GISFAIPIDYAIEFLTNYKRKDID 58
GNSGG LVN++ +++G+NS T G+ FAIP+D A ++ D
Sbjct: 167 GNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQA--------KRIAD 218
Query: 59 RTITHKK----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRT 114
I+ K +G+ + + T G I V+ A
Sbjct: 219 ELISTGKASHASLGVQVTNDKD----------------TLGAKIVEVVAGGAA------A 256
Query: 115 SAGIKP 120
+AG+
Sbjct: 257 NAGVPK 262
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 81.5 bits (202), Expect = 7e-19
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 29/119 (24%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
GN+GG L+NL+GE+IGIN+ + GI FAIP + A R + I +
Sbjct: 185 GNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMA--------RTLAQQLIDFGE 236
Query: 66 ----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
+GI ++ + + D G + V+ S + AG+K
Sbjct: 237 IKRGLLGIKGTEMSADIAKAFNLDV------QRGAFVSEVLPGSGS------AKAGVKA 283
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 80.4 bits (199), Expect = 1e-18
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 29/119 (24%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
GNSGG L+NL+GE+IGIN+ + GI FAIP + A R + I +
Sbjct: 185 GNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMA--------RTLAQQLIDFGE 236
Query: 66 ----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
+GI ++ + + D G + V+ S + AG+K
Sbjct: 237 IKRGLLGIKGTEMSADIAKAFNLDV------QRGAFVSEVLPGSGS------AKAGVKA 283
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A
{Thermotoga maritima} SCOP: b.47.1.1
Length = 239
Score = 67.7 bits (166), Expect = 1e-14
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYA 45
GNSGGPL+N+ GEVIGIN+ V + FAIPI+
Sbjct: 181 GNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTV 219
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A
{Staphylococcus aureus}
Length = 210
Score = 67.1 bits (164), Expect = 2e-14
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVTA----GISFAIPIDYAIEFLTNYKRK 55
GNSG P++N + EVIG+ + +F+ + +
Sbjct: 156 GNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ 204
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol
protease, RNA replication, ribosomal frameshifting,
catalytic triad, membrane; 2.00A {Human astrovirus 1}
Length = 163
Score = 63.9 bits (156), Expect = 1e-13
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 11 GNSGGPLVNLDGEVIGINSMK--VTAGISFAIPIDYA 45
G SG P+ + V+ ++ T G P D+
Sbjct: 125 GMSGAPVCDKYCRVLAVHQTNTGYTGGAVIIDPTDFH 161
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase;
2.60A {Escherichia coli}
Length = 245
Score = 63.8 bits (156), Expect = 4e-13
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYA 45
GNSGG L+NL+GE+IGIN+ + GI FAIP + A
Sbjct: 185 GNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMA 224
>3k6y_A Serine protease, possible membrane-associated serine protease;
oxidative stress, disulfide, BENT helix, HY protease;
1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Length = 237
Score = 63.5 bits (155), Expect = 5e-13
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVT--AGISFAIPIDYAIEFLTNYKR 54
G+SGGPL++L+G+V+G+ A F + L
Sbjct: 181 GDSGGPLIDLNGQVLGVVFGAAIDDAETGFVLTAGEVAGQLAKIGA 226
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A
{Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A
1exf_A 1due_A
Length = 242
Score = 61.8 bits (150), Expect = 2e-12
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPID 43
GNSG + N +GE++GI+S KV+ I++ + I
Sbjct: 193 GNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIG 230
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR;
1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A*
3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A
3lgt_A 2r3u_A
Length = 237
Score = 61.5 bits (150), Expect = 3e-12
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
Query: 11 GNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYA 45
GNSGG LVN GE++GIN++ + GI FAIP A
Sbjct: 174 GNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLA 216
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 57.7 bits (140), Expect = 1e-11
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 18/92 (19%)
Query: 62 THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP- 120
K++IGI M T+ L+++L+ +++ G+ + V NSP+ GI+
Sbjct: 3 HMKRFIGIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQ------RGGIQDG 56
Query: 121 -----------TSSRLLGECLAQYTTSKLVVW 141
S L E + + L V
Sbjct: 57 DIIVKVNGRPLVDSSELQEAVLTESPLLLEVR 88
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 57.2 bits (139), Expect = 3e-11
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 20/90 (22%)
Query: 35 GISFAIPIDYAIEFLTNYKRKDIDRTITHKK----YIGITMLTLNEKLIEQLRRDRHIPY 90
G+ FAIP + AI I++ + K +GI M+ L+ +RR +IP
Sbjct: 3 GLGFAIPANDAINI--------IEQLEKNGKVTRPALGIQMVNLSNVSTSDIRR-LNIPS 53
Query: 91 DLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
++T GV++ V N PA + ++
Sbjct: 54 NVTSGVIVRSVQSNMPA-------NGHLEK 76
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 56.6 bits (137), Expect = 3e-11
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 64 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
++YIG+ MLTL+ ++ +L+ D+ HGVLI +V+ SPA+ AG++P
Sbjct: 5 RRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAH------RAGLRP 55
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 58.3 bits (141), Expect = 3e-11
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 11 GNSGGPLVNLDGEVIGINSMKV-----TAGISFAIPIDYAIEFLTNYKRK 55
GNSG P++N + E++GI+ +F+ K
Sbjct: 155 GNSGSPVLNSNNELVGIHFASDVKNDDNRNAYGVYFTPEIKKFIAENIDK 204
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 53.9 bits (130), Expect = 1e-09
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRK 55
GNSG P++N E+IGI EF+ N K
Sbjct: 152 GNSGSPVLNSKHELIGILYAGSGKDESEKNFGVYFTPQLK-EFIQNNIEK 200
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 53.4 bits (128), Expect = 2e-09
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVTA-GISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
GNSG + NL GE+IGI+S K + + + I L + D K
Sbjct: 184 GNSGSGIFNLKGELIGIHSGKGGQHNLPIGVFFNRKISSLYSVDNTFGDTLGNDLK 239
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 46.2 bits (109), Expect = 1e-06
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDIDR 59
GNSG P+ N EVIGI+ V + A+ I+ + N+ +++I+
Sbjct: 167 GNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENVR---NFLKQNIED 212
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels,
C-terminal alpha-beta extra domain; 1.90A {Porcine
respiratory and reproductivesyndrome virus} PDB: 3fao_A
Length = 213
Score = 43.2 bits (101), Expect = 8e-06
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVTAGI-SFAIPIDYAIE 47
G+SG P++ GE++G+++ G P
Sbjct: 125 GDSGSPVITEAGELVGVHTGSNKQGGGIVTRPSGQFCN 162
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 42.5 bits (100), Expect = 1e-05
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIPIDYA 45
T + + G+SGGPL + IG+ S + G +F P+ A
Sbjct: 132 TNVCAEPGDSGGPLYS-GTRAIGLTSGGSGNCSSGGTTFFQPVTEA 176
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 38.0 bits (88), Expect = 6e-04
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVTAG-ISFAIPIDYAI-EFLTNYKRK 55
GNSG +++ + +++G+++ + G I+ A EF+ K +
Sbjct: 169 GNSGSAMLDQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKAQ 215
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 6e-04
Identities = 29/165 (17%), Positives = 47/165 (28%), Gaps = 65/165 (39%)
Query: 2 SLTGIM--------VKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYK 53
S+ I+ + FG G G+ I N + F +D ++ +K
Sbjct: 1660 SILDIVINNPVNLTIHFG---GE----KGKRIRENYSAMI----FETIVDGKLKTEKIFK 1708
Query: 54 RKDIDRTITHKKYI-----GITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVM-----Y 103
+I+ T Y G+ T Q P + +
Sbjct: 1709 --EINEHST--SYTFRSEKGLLSATQFT----Q-------PALTLMEKAAFEDLKSKGLI 1753
Query: 104 NSPAYFIKFRTSAGIKPTSSRLLGE-----CLAQY----TTSKLV 139
+ A F AG S LGE LA + ++V
Sbjct: 1754 PADATF------AG----HS--LGEYAALASLADVMSIESLVEVV 1786
Score = 36.2 bits (83), Expect = 0.004
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 26/88 (29%)
Query: 2 SLTGIMVKFGNSGGPLV-----NLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKD 56
+L ++ + G G LV N++ + V AG A+ D L K +
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQY------VAAGDLRAL--DTVTNVLNFIKLQK 1876
Query: 57 IDRTITHKKYIGITMLTLNEKL-IEQLR 83
ID ++ L + L +E++
Sbjct: 1877 ID------------IIELQKSLSLEEVE 1892
Score = 35.4 bits (81), Expect = 0.006
Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 55/158 (34%)
Query: 15 GPLVNLDGEVIGINSMKVTAGISFA-IP-----IDYAIEFLTNYKRKDIDRTIT---HKK 65
GP +L G + + K +G+ + IP + ++ FL + H
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP----------VASPFHSH 430
Query: 66 YIGITMLTLNEKLIEQLRRDR--------HIP-YDLTHGVLIWRVMYNSPAYFIKFRTSA 116
++ ++ + + L ++ IP YD T + R +
Sbjct: 431 L----LVPASDLINKDLVKNNVSFNAKDIQIPVYD-TFD---GSDL----------RVLS 472
Query: 117 GIKPTSSRLLGECLAQYTTSKLVVW-SINHPSITCHIL 153
G + E + V W + T HIL
Sbjct: 473 G-------SISERIVDCIIRLPVKWETTTQFKAT-HIL 502
Score = 26.9 bits (59), Expect = 3.9
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 142 SINHPSITCHILL--RLYLLVCSELT-KFLS 169
+++H S+ +L+ + + S+L +F
Sbjct: 10 TLSHGSLEHVLLVPTASF-FIASQLQEQFNK 39
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 36.8 bits (85), Expect = 0.001
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKV----TAGISFAIPIDYAIEFL 49
M T G+SGG +GI+S TAG + P+ A+
Sbjct: 131 MVRTTACSAGGDSGGAHFA-GSVALGIHSGSSGCSGTAGSAIHQPVTEALSAY 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.003
Identities = 32/190 (16%), Positives = 53/190 (27%), Gaps = 79/190 (41%)
Query: 39 AIPIDYAIEFL-TNYKRKDIDRTITHKKYIG----------------ITMLTLNEKLIEQ 81
+ I+Y +FL + K + ++ + YI ++ L KL +
Sbjct: 86 VLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 82 LRRDRHIPYDLTHG-------VLI------------------W----------------- 99
L R L G + W
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 100 ----RVMYN-----SPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLV---VWS---IN 144
++ N + IK R + I+ RLL Y LV V + N
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLL--KSKPYENCLLVLLNVQNAKAWN 260
Query: 145 HPSITCHILL 154
+++C ILL
Sbjct: 261 AFNLSCKILL 270
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 34.9 bits (80), Expect = 0.006
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 1 MSLTGIMVKFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIPIDYAIEFL 49
+ T + + G+SGG L+ + G+ S T G +F P++ ++
Sbjct: 125 LIRTTVCAEPGDSGGSLLA-GNQAQGVTSGGSGNCRTGGTTFFQPVNPILQAY 176
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 34.1 bits (78), Expect = 0.010
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 1 MSLTGIMVKFGNSGGPLVNLDGEVIGI----NSMKVTAGISFAIPIDYAIEFL 49
M T + + G+SGG L +G+ + T G +F P+ A+
Sbjct: 125 MIQTNVCAQPGDSGGSLFA-GSTALGLTSGGSGNCRTGGTTFYQPVTEALSAY 176
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 34.2 bits (78), Expect = 0.011
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 1 MSLTGIMVKFGNSGGPLVNLDGEVIGINS 29
++ + G+SGG + G+ G+ S
Sbjct: 131 LTQGNACMGRGDSGGSWITSAGQAQGVMS 159
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 33.4 bits (76), Expect = 0.016
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 1 MSLTGIMVKFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIPIDYA 45
++ T + + G+SGG ++ + G+ S T G +F ++
Sbjct: 131 LTRTSVCAEPGDSGGSFIS-GTQAQGVTSGGSGNCRTGGTTFYQEVNPM 178
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 32.5 bits (74), Expect = 0.038
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 1 MSLTGIMVKFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIPIDYA 45
++ T + G+SGGP + + G+ S + GI+F PI+
Sbjct: 128 LTRTTACAEGGDSGGPWLT-GSQAQGVTSGGTGDCRSGGITFFQPINPL 175
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 31.4 bits (72), Expect = 0.10
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 11 GNSGGPLVNLDGEVIGINS 29
G+SGGP+V+ +IG S
Sbjct: 178 GDSGGPIVDSSNTLIGAVS 196
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase;
2.40A {Sesbania mosaic virus}
Length = 191
Score = 30.5 bits (68), Expect = 0.19
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVTAG-ISFAIPIDYAIEFL 49
G SG PL + V+G++ G ++ + + Y +L
Sbjct: 148 GWSGTPLYS-SRGVVGMHVGFEEIGKLNRGVNMFYVANYL 186
>2fp7_B Serine protease NS3; flavivirus, NS3 protease, NS2B cofactor; HET:
OAR; 1.68A {West nile virus} SCOP: b.47.1.3
Length = 172
Score = 29.9 bits (67), Expect = 0.24
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 10 FGNSGGPLVNLDGEVIGI--NSMKVTAG 35
G SG P+V+ +G+VIG+ N + + G
Sbjct: 117 TGTSGSPIVDKNGDVIGLYGNGVIMPNG 144
>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral
protein, hydrolase; 1.70A {Tobacco vein mottling virus}
Length = 241
Score = 30.3 bits (68), Expect = 0.25
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 6 IMVKFGNSGGPLVNL-DGEVIGINSMKVTAGIS--FA-IPIDYAIEFLTN 51
I K G +G PLV++ DG ++GI+S+ T S F P + +L
Sbjct: 144 ITTKDGQAGSPLVSIIDGNILGIHSLTHTTNGSNYFVEFPEKFVATYLDA 193
>3u1j_B Serine protease NS3; serine protease, ER MEM hydrolase-hydrolase
inhibitor complex; 1.80A {Dengue virus 3} PDB: 3u1i_B
Length = 191
Score = 29.9 bits (67), Expect = 0.29
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 10 FGNSGGPLVNLDGEVIGI 27
G SG P++N +G+V+G+
Sbjct: 141 PGTSGSPIINREGKVVGL 158
>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral
protein-prote complex; 1.50A {Dengue virus 2} SCOP:
b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A
Length = 185
Score = 29.5 bits (66), Expect = 0.34
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 10 FGNSGGPLVNLDGEVIGI 27
G SG P+V+ G+V+G+
Sbjct: 132 PGTSGSPIVDKKGKVVGL 149
>3e90_B NS3 protease; trypsin-like serine protease, protease inhibitor,
catalytic histidine, induced FIT, ATP-binding, capsid
protein, helicase; HET: NKK; 2.45A {West nile virus}
Length = 198
Score = 29.6 bits (66), Expect = 0.40
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 10 FGNSGGPLVNLDGEVIGI--NSMKVTAG 35
G SG P+V+ +G+VIG+ N + + G
Sbjct: 136 TGTSGSPIVDKNGDVIGLYGNGVIMPNG 163
>2ggv_B NS3, non-structural protein 3; beta barrel, serine protease, viral
protease, flavivirus, hydrolase; 1.80A {West nile virus}
PDB: 2ijo_B
Length = 185
Score = 29.5 bits (66), Expect = 0.40
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 10 FGNSGGPLVNLDGEVIGI 27
G SG P+V+ +G+VIG+
Sbjct: 131 TGTSGSPIVDKNGDVIGL 148
>3lkw_A Fusion protein of nonstructural protein 2B and nonstructural
protein 3; viral protease, serine protease, NS3
protease, NS2B cofactor; 2.00A {Dengue virus 1} PDB:
3l6p_A
Length = 236
Score = 29.6 bits (66), Expect = 0.45
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 10 FGNSGGPLVNLDGEVIGI 27
G +G P+VN +G+++G+
Sbjct: 182 PGTAGSPIVNREGKIVGL 199
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta
barrel, chymotrypsin-type cystein protease, enzyme-
peptide complex; 1.80A {Tobacco etch virus} SCOP:
b.47.1.3 PDB: 1lvb_A 1q31_A
Length = 229
Score = 29.1 bits (65), Expect = 0.63
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 11 GNSGGPLVNL-DGEVIGINSMKVTAGIS--FAIPIDYAIEFLTN 51
G G PLV+ DG ++GI+S + F +E LTN
Sbjct: 157 GQCGSPLVSTRDGFIVGIHSASNFTNTNNYFTSVPKNFMELLTN 200
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 28.8 bits (65), Expect = 0.77
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 11 GNSGGPLVNLDG--EVIGINSMKVTAGISFAIP 41
G+SGGPL DG V+G+ S V++G+ +P
Sbjct: 189 GDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLP 221
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 28.3 bits (64), Expect = 1.1
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 11 GNSGGPLVNLDGEVIGINS 29
G+SGGPLV +G IGI S
Sbjct: 176 GDSGGPLV-ANGAQIGIVS 193
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 28.3 bits (64), Expect = 1.3
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 5 GIMVKFGNSGGPLVNLDGEVIGINSMKVT 33
G+ V FGN+ G + + ++ +
Sbjct: 241 GVFVSFGNASGLIPPFSITRLSPKNITLV 269
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 27.9 bits (63), Expect = 1.5
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 11 GNSGGPLVNLDGEVIGINS 29
G+SGGPL +G GI S
Sbjct: 176 GDSGGPLN-YNGLTYGITS 193
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 28.0 bits (63), Expect = 1.6
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 5 GIMVKFGN--SGGPLVNLDGEVIG-INSMK--------VTAGISFAIPID 43
G+ V G G PL+N DGE +G + SM+ + G A+ I
Sbjct: 483 GVEVLTGVIRQGYPLMNDDGETVGTVESMQDKGENLKSASRGQKVAMAIK 532
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 27.6 bits (62), Expect = 1.8
Identities = 5/17 (29%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 11 GNSGGPLVNLDGEVIGI 27
G++G P V ++G+
Sbjct: 181 GDAGDPTVQ-QDTLVGV 196
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB:
3k6e_A
Length = 156
Score = 27.3 bits (61), Expect = 1.9
Identities = 5/54 (9%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 6 IMVKFGNSGGPLVNLDGEVIGINSMKVTAG--ISFAIPIDYAIEFLTNYKRKDI 57
++ + + P+V + + +G + +++ + D + E + + +
Sbjct: 42 LLSQMTYTRVPVVTDEKQFVGT----IGLRDIMAYQMEHDLSQEIMADTDIVHM 91
>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine
proteinase, chymotrypsin-like proteinase, collapsed O
HOLE, transferase; 2.00A {Equine arteritis virus} SCOP:
b.47.1.3
Length = 198
Score = 27.5 bits (60), Expect = 2.0
Identities = 6/19 (31%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 11 GNSGGPLVNLDGEVIGINS 29
G+SG +V V+G+++
Sbjct: 112 GDSGSAVVQ-GDAVVGVHT 129
>1sp3_A Cytochrome C, putative; octaheme, oxidoreductase; HET: HEM; 2.20A
{Shewanella oneidensis} SCOP: a.138.1.3
Length = 443
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/64 (18%), Positives = 17/64 (26%), Gaps = 7/64 (10%)
Query: 89 PYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTS-------KLVVW 141
YD + I Y Y+ +F + K S + W
Sbjct: 337 IYDKKLNIFITPKTYGKGGYWSEFDWNLAAKLGMEANPTMLEKGIKYSGEYDFAATEMWW 396
Query: 142 SINH 145
INH
Sbjct: 397 RINH 400
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 27.5 bits (62), Expect = 2.2
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 5 GIMVKFGNSGGPLVNLD-GEVIGINSMKVT 33
G++V FGN+ GP+ ++ G + +S+ VT
Sbjct: 233 GLVVSFGNASGPVSGVNLGILAQKDSVYVT 262
>2ns2_A Spindlin-1; beta barrel, repeat domains, cell cycle; 2.20A {Homo
sapiens}
Length = 242
Score = 27.0 bits (59), Expect = 2.8
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 12/112 (10%)
Query: 9 KFGNSGGPLVNLDGEVIG-INSMKVTAGISF-AIPIDYAIEFLTNYKRKDI------DRT 60
F G G V+ M I++ P+ Y + L +YK D+ + +
Sbjct: 120 MFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDS 179
Query: 61 ITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKF 112
++ G + +L K +E + D G++I +V YFIKF
Sbjct: 180 PPAEREPGEVVDSLVGKQVEYAKEDGSKRT----GMVIHQVEAKPSVYFIKF 227
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 27.0 bits (59), Expect = 2.9
Identities = 8/23 (34%), Positives = 9/23 (39%), Gaps = 3/23 (13%)
Query: 10 FGNSGGPLV---NLDGEVIGINS 29
G+SGGP G NS
Sbjct: 166 GGSSGGPWFLGNGTGGAQNSTNS 188
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 26.8 bits (60), Expect = 3.0
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 11 GNSGGPLV-NLDGEVIGINS 29
G+SGGP V + +IG+ S
Sbjct: 178 GDSGGPFVLSDKNLLIGVVS 197
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory
for structural genomics, secsg; 2.59A
{Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 26.4 bits (59), Expect = 3.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 6 IMVKFGNSGGPLVNLDGEVIGI 27
M+K+ S P+++ + +VIGI
Sbjct: 33 KMLKYKISSLPVIDDENKVIGI 54
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 26.8 bits (60), Expect = 3.3
Identities = 6/17 (35%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 11 GNSGGPLVNLDGEVIGI 27
G++G P V +G ++G+
Sbjct: 184 GDAGDPAVQ-NGTLVGV 199
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 26.7 bits (60), Expect = 4.9
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 6 IMVKFGNSGGPLVNLDGEVIGI 27
+M ++ G P+V+ +G ++G+
Sbjct: 120 LMAEYKIGGLPVVDEEGRLVGL 141
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 26.1 bits (58), Expect = 5.3
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 6 IMVKFGNSGGPLVNLDGEVIGI 27
+++ + V D +++G+
Sbjct: 41 RILEDPVTRTVYVARDNKLVGM 62
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 26.4 bits (58), Expect = 5.7
Identities = 6/51 (11%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 61 ITHKKYIGITMLTLNEKLIEQLRRD-RHIPYDLTHGVLIWRVMYNSPAYFI 110
+ +K+ T + + + + R + Y + + +++P +F
Sbjct: 1119 TSSEKFKSGTKKDVVKFIEDYSRVNPNKSVYYFS-------LNHDNPGWFY 1162
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 26.4 bits (59), Expect = 5.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 5 GIMVKFGNSGGPLVNLD 21
G+MV FGNS G + ++
Sbjct: 233 GLMVSFGNSSGAVTGVN 249
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 26.0 bits (58), Expect = 5.8
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 11 GNSGGPLVNLDGEVIGINS 29
G+SGGPL+ +G GI S
Sbjct: 102 GDSGGPLIC-NGMWQGITS 119
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 26.3 bits (59), Expect = 6.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 6 IMVKFGNSGGPLVNLDGEVIGI 27
+ G +G P+V + E++GI
Sbjct: 114 LTHYHGFAGFPVVTENNELVGI 135
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 26.0 bits (58), Expect = 6.2
Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 11 GNSGGPLVNLDGEVIGINS 29
G+SGGPL+ +GE+ GI +
Sbjct: 178 GDSGGPLI-CNGEMHGIVA 195
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 26.3 bits (58), Expect = 6.3
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 6 IMVKFGNSGGPLVNLDGEVIGI 27
+ G P+VN + ++I +
Sbjct: 109 TFLTKNVGGAPIVNDENQLISL 130
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 26.1 bits (57), Expect = 6.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 11 GNSGGPLVNLDGEVIGI 27
G+SGGPL+ G +GI
Sbjct: 172 GSSGGPLLCPSGHAVGI 188
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 26.0 bits (58), Expect = 6.5
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 5 GIMVKFGNSGGPLVNLD 21
G+ +G++ G +
Sbjct: 238 GMCAAYGHASGVADPIR 254
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C*
1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C
1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C
2gmt_C* ...
Length = 97
Score = 24.8 bits (55), Expect = 7.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 11 GNSGGPLV-NLDG--EVIGINS 29
G+SGGPLV +G ++GI S
Sbjct: 45 GDSGGPLVCKKNGAWTLVGIVS 66
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 25.5 bits (57), Expect = 7.6
Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 11 GNSGGPLVNLDGEVIGINS 29
G+SGGP+V +GE+ G+ S
Sbjct: 174 GDSGGPVVC-NGELQGVVS 191
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses;
2.50A {Geobacillus kaustophilus}
Length = 157
Score = 25.5 bits (56), Expect = 8.1
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 6 IMVKFGNSGGPLVNLDGEVIGI 27
++ K G S P+++ ++ G+
Sbjct: 38 VLTKTGYSAIPVLDTSYKLHGL 59
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 25.9 bits (57), Expect = 8.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 6 IMVKFGNSGGPLVNLDGEVIGI 27
IMV P+V+++ + +GI
Sbjct: 118 IMVTRNFGSLPVVDINDKPVGI 139
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM;
1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A*
3kpc_A*
Length = 122
Score = 25.2 bits (56), Expect = 8.2
Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 6 IMVKFGNSGGPLVNLDGEVIGINSMKVTAG-ISFAIP 41
I++K + P+V+ G+++GI +T+ I+ A+
Sbjct: 26 ILIKHNINHLPIVDEHGKLVGI----ITSWDIAKALA 58
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 25.6 bits (57), Expect = 9.0
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 11 GNSGGPLVNLDGEVIGINS 29
G+SGGPL+ DG + GI+S
Sbjct: 174 GDSGGPLI-CDGIIQGIDS 191
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 25.6 bits (57), Expect = 9.1
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 11 GNSGGPLVNLDGEVIGINS 29
G+SGGPL+ +G+ GI S
Sbjct: 175 GDSGGPLI-CNGQFQGILS 192
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 25.4 bits (56), Expect = 9.1
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 6 IMVKFGNSGGPLVNLDGEVIGI 27
+M P+V+ + +++GI
Sbjct: 30 LMEALDIRHVPIVDANKKLLGI 51
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
domain, lipid synthesis, fatty acid biosynthesis; HET:
AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Length = 152
Score = 25.3 bits (56), Expect = 9.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 6 IMVKFGNSGGPLVNLDGEVIGINS 29
I V+ S P+V+ G V+ I S
Sbjct: 46 IFVQHRVSALPVVDEKGRVVDIYS 69
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase,
golgi apparatus, membrane, signal-anchor, transmembrane;
HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1
b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A*
3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A*
1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A*
2alw_A* 2f18_A* ...
Length = 1045
Score = 25.6 bits (55), Expect = 10.0
Identities = 3/69 (4%), Positives = 17/69 (24%)
Query: 43 DYAIEFLTNYKRKDIDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVM 102
D ++ + E ++++ +R + + +
Sbjct: 316 DLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQ 375
Query: 103 YNSPAYFIK 111
+ + +
Sbjct: 376 FGTLQEYFD 384
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.420
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,608,573
Number of extensions: 150101
Number of successful extensions: 679
Number of sequences better than 10.0: 1
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 124
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.4 bits)