RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18070
(169 letters)
>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 205
Score = 72.7 bits (177), Expect = 6e-17
Identities = 34/46 (73%), Positives = 38/46 (82%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFL 49
T + FGN+GGPLVNLDGEVIG+N+MKVTAGISFAIP D EFL
Sbjct: 159 TDAAIDFGNAGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFL 204
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic
domain {Escherichia coli [TaxId: 562]}
Length = 249
Score = 63.8 bits (154), Expect = 2e-13
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRK 55
T + GN+GG LVNL+GE+IGIN+ + GI FAIP + +
Sbjct: 191 TDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEY 247
>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain
{Thermotoga maritima [TaxId: 2336]}
Length = 228
Score = 63.4 bits (153), Expect = 2e-13
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIEFL 49
T + GNSGGPL+N+ GEVIGIN+ V + FAIPI+ +FL
Sbjct: 174 TDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFL 223
>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 221
Score = 53.5 bits (127), Expect = 7e-10
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA------------GISFAIPIDYAIEFLTN 51
T + GNSGG LVN++ +++G+NS T G+ FAIP+D A
Sbjct: 155 TDAAINPGNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADE 214
Query: 52 YKRK 55
Sbjct: 215 LIST 218
>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A
{Staphylococcus aureus [TaxId: 1280]}
Length = 242
Score = 52.7 bits (125), Expect = 2e-09
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPI-DYAIEFL 49
GNSG + N +GE++GI+S KV+ I++ + I +Y +
Sbjct: 193 GNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIGNYVKRII 237
>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus
[TaxId: 1280]}
Length = 246
Score = 49.2 bits (116), Expect = 3e-08
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
GNSG + NL GE+IGI+S K G+ F I + + K
Sbjct: 184 GNSGSGIFNLKGELIGIHSGKGGQHNLPIGVFFNRKISSLYSVDNTFGDTLGNDLKKRAK 243
>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1
[TaxId: 1911]}
Length = 181
Score = 46.3 bits (109), Expect = 2e-07
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIPIDYAIE 47
T + + G+SGG L +G+ S T G +F P+ A+
Sbjct: 128 TNVCAQPGDSGGSLFA-GSTALGLTSGGSGNCRTGGTTFYQPVTEALS 174
>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus
[TaxId: 1280]}
Length = 216
Score = 46.6 bits (109), Expect = 2e-07
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 11 GNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAI-EFLTN 51
GNSG P+ N EVIGI+ V + A+ I+ + FL
Sbjct: 167 GNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQ 208
>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus,
strain k1 [TaxId: 1911]}
Length = 185
Score = 44.4 bits (104), Expect = 1e-06
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIE 47
T + + G+SGGPL + IG+ S G +F P+ A+
Sbjct: 132 TNVCAEPGDSGGPLYS-GTRAIGLTSGGSGNCSSGGTTFFQPVTEALS 178
>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 42.6 bits (100), Expect = 1e-06
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 64 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYF 109
++YIG+ MLTL+ ++ +L+ D+ HGVLI +V+ SPA+
Sbjct: 1 RRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHR 46
>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic
domain {Escherichia coli [TaxId: 562]}
Length = 210
Score = 44.0 bits (102), Expect = 2e-06
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA--------GISFAIPIDYAIEFLTNYKRK 55
T + GNSGG LVN GE++GIN++ GI FAIP A + + R
Sbjct: 150 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 209
>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A,
NIA) {Tobacco etch virus, TEV [TaxId: 12227]}
Length = 219
Score = 41.6 bits (97), Expect = 1e-05
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 6 IMVKFGNSGGPLVNL-DGEVIGINSMKVTA---GISFAIPIDYAIEFLTNYKRKDIDR 59
I K G G PLV+ DG ++GI+S ++P ++ +E LTN + +
Sbjct: 142 IQTKDGQCGSPLVSTRDGFIVGIHSASNFTNTNNYFTSVPKNF-MELLTNQEAQQWVS 198
>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces
griseus [TaxId: 1911]}
Length = 187
Score = 41.1 bits (95), Expect = 1e-05
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 4 TGIMVKFGNSGGPLVNLDGEVIGINSMKV----TAGISFAIPIDYAI 46
T G+SGG +GI+S TAG + P+ A+
Sbjct: 134 TTACSAGGDSGGAHFA-GSVALGIHSGSSGCSGTAGSAIHQPVTEAL 179
>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter
enzymogenes, 495 [TaxId: 69]}
Length = 198
Score = 37.2 bits (85), Expect = 4e-04
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVTA------GISFAIPIDYAI 46
++ + G+SGG + G+ G+ S GI +
Sbjct: 131 LTQGNACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGIPASQRSSLFE 182
>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C)
{Foot-and-mouth disease virus FMDV [TaxId: 12110]}
Length = 199
Score = 36.2 bits (83), Expect = 8e-04
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 11 GNSGGPLV---NLDGEVIGINSMKVTAGISFAIPID 43
G +GG ++ D ++G +S G+ + +
Sbjct: 155 GYAGGAVLAKDGADTFIVGTHSA-GGNGVGYCSCVS 189
>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius
[TaxId: 1400]}
Length = 215
Score = 32.0 bits (71), Expect = 0.020
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 7 MVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYA 45
GNSG +++ + +++G+++ + G P A
Sbjct: 165 DTFSGNSGSAMLDQNQQIVGVHNAGYSNGTINGGPKATA 203
>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2
[TaxId: 11060]}
Length = 150
Score = 28.1 bits (63), Expect = 0.29
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 11 GNSGGPLVNLDGEVIGI--NSMKVTAGI 36
G SG P+V+ G+V+G+ N + +G
Sbjct: 116 GTSGSPIVDKKGKVVGLYGNGVVTRSGA 143
>d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId:
11082]}
Length = 152
Score = 28.1 bits (63), Expect = 0.37
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 11 GNSGGPLVNLDGEVIGI 27
G SG P+V+ +G+VIG+
Sbjct: 115 GTSGSPIVDKNGDVIGL 131
>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId:
6396]}
Length = 241
Score = 26.3 bits (56), Expect = 1.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 5 GIMVKFGNSGGPLVNLDG--EVIGINSMKVTAGISFAIPIDYAI 46
G+SGGPL DG V+G+ S V++G+ +P ++
Sbjct: 183 NTGACNGDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLPDYPSV 226
>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 88
Score = 24.9 bits (54), Expect = 2.9
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 6/28 (21%)
Query: 93 THGVLIWRVMYNSPAYFIKFRTSAGIKP 120
T G I V+ A +AG+
Sbjct: 15 TLGAKIVEVVAGGAAA------NAGVPK 36
>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal
domains {Escherichia coli [TaxId: 562]}
Length = 88
Score = 24.5 bits (53), Expect = 3.5
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 6/30 (20%)
Query: 91 DLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
GV++ V +PA G+K
Sbjct: 22 GKDQGVVVNNVKTGTPAA------QIGLKK 45
>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum)
[TaxId: 5507]}
Length = 224
Score = 25.0 bits (53), Expect = 4.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 5 GIMVKFGNSGGPLVNLDGEVIGINS 29
G G+SGGP+V+ +IG S
Sbjct: 172 GKDSCQGDSGGPIVDSSNTLIGAVS 196
>d1xv2a_ d.290.1.1 (A:) Hypothetical protein SA2394
{Staphylococcus aureus [TaxId: 1280]}
Length = 232
Score = 24.7 bits (54), Expect = 5.8
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 9 KFGNSG-GPLVNLDGEVIGINS 29
+ GN G L DGEVI ++
Sbjct: 28 EHGNLGIATLTGSDGEVIFLDG 49
>d1f06a2 d.81.1.3 (A:119-268) Diaminopimelic acid dehydrogenase
(DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}
Length = 150
Score = 24.4 bits (53), Expect = 7.0
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 32 VTAGISFAIPIDYAIEFLTNYKRKDIDRTITHKKY 66
V + + +P + A+E + D+ THK+
Sbjct: 44 VQKAVQYTLPSEDALEKARRGEAGDLTGKQTHKRQ 78
>d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease
{Bacillus pasteurii [TaxId: 1474]}
Length = 180
Score = 23.9 bits (52), Expect = 9.3
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 17/59 (28%)
Query: 5 GIMVKFGNSGGPLVNLDG-----------EVIGINSMKVTAGI-----SFAIPIDYAIE 47
G +V G G P + +DG EVI VTA + F + D I+
Sbjct: 92 GYIVGIGKGGNPDI-MDGVTPNMIVGTATEVIAAEGKIVTALVLWEPKFFGVKADRVIK 149
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.420
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 637,862
Number of extensions: 28769
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 29
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.1 bits)