BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18072
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q8K|A Chain A, Solution Structure Of Alpha Subunit Of Human Eif2
Length = 308
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 60/92 (65%), Gaps = 5/92 (5%)
Query: 3 LSCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLI 62
+SCRFY K+PEVEDVVMV V SI EMGAYV LLEYNNIEGM NKLI
Sbjct: 1 MSCRFYQHKFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLI 60
Query: 63 RVGKTEPVVVIRVDKEK-----VMTTVTPEKA 89
R+G+ E V VIRVDKEK V+PE+A
Sbjct: 61 RIGRNECVKVIRVDKEKGYIDLSKRRVSPEEA 92
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 40/55 (72%)
Query: 80 VMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMAPKVVTASDEAELARQM 134
VMTT T E+ +GL L +A+ IK KIE+ GVF VQM PKVVT +DE ELARQM
Sbjct: 233 VMTTTTLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQM 287
>pdb|1Q46|A Chain A, Crystal Structure Of The Eif2 Alpha Subunit From
Saccharomyces Cerevisia
Length = 175
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 51/75 (68%)
Query: 5 CRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLIRV 64
CRFY KYPE++D+VMV V IAEMGAYV LLEY+NIEGM KLIRV
Sbjct: 5 CRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRV 64
Query: 65 GKTEPVVVIRVDKEK 79
GK + VV+RVDKEK
Sbjct: 65 GKNDVAVVLRVDKEK 79
>pdb|2A19|A Chain A, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|A Chain A, Pkr Kinase Domain-Eif2alpha Complex
Length = 175
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 51/75 (68%)
Query: 5 CRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLIRV 64
CRFY KYPE++D+VMV V IAEMGAYV LLEY+NIEGM KLIRV
Sbjct: 5 CRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRV 64
Query: 65 GKTEPVVVIRVDKEK 79
GK + VV+RVDKEK
Sbjct: 65 GKNDVAVVLRVDKEK 79
>pdb|1KL9|A Chain A, Crystal Structure Of The N-Terminal Segment Of Human
Eukaryotic Initiation Factor 2alpha
Length = 182
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
Query: 3 LSCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLI 62
LSCRFY K+PEVEDVV V V SIAE GAYV LLEYNNIEG NKLI
Sbjct: 3 LSCRFYQHKFPEVEDVVXVNVRSIAEXGAYVSLLEYNNIEGXILLSELSRRRIRSINKLI 62
Query: 63 RVGKTEPVVVIRVDKEK-----VMTTVTPEKA 89
R+G+ E VVVIRVDKEK V+PE+A
Sbjct: 63 RIGRNECVVVIRVDKEKGYIDLSKRRVSPEEA 94
>pdb|1YZ6|A Chain A, Crystal Structure Of Intact Alpha Subunit Of Aif2 From
Pyrococcus Abyssi
Length = 274
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 9/115 (7%)
Query: 9 AEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLIRVGKTE 68
A +YPE + V+ TV I GA++ L EY E ++ G+
Sbjct: 4 AREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKV 63
Query: 69 PVVVIRVDKEK-----VMTTVTPE----KADGLKALQEAIDTIKAKIEQLGGVFQ 114
VIRVD K + VT + K K Q+A + +K E+LG F+
Sbjct: 64 VAKVIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLKLAAEKLGKDFE 118
>pdb|3AEV|A Chain A, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From
Pyrococcus Horikoshii Ot3
Length = 275
Score = 33.1 bits (74), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 13/123 (10%)
Query: 1 MPLSCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNK 60
MP R +YPE + V+ TV I GA++ L EY E
Sbjct: 1 MPRKAR----EYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRD 56
Query: 61 LIRVGKTEPVVVIRVDKEK-----VMTTVTPE----KADGLKALQEAIDTIKAKIEQLGG 111
++ G+ VIRVD K + VT + K K Q+A + ++ E+LG
Sbjct: 57 YLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLRLAAEKLGK 116
Query: 112 VFQ 114
F+
Sbjct: 117 DFE 119
>pdb|2AHO|B Chain B, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus
Complexed With Gdpnp
pdb|3CW2|C Chain C, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|D Chain D, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|G Chain G, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|H Chain H, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3V11|B Chain B, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 266
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 7 FYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLIRVGK 66
+ K P ++++ TV + + G+YV L EY ++ +++ +
Sbjct: 3 YSRSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENR 62
Query: 67 TEPVVVIRVDKEKVMTTVTPEK 88
V VIRVD+ K V+ +K
Sbjct: 63 KVIVKVIRVDRRKGTVDVSLKK 84
>pdb|1Q1L|A Chain A, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|B Chain B, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|C Chain C, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|D Chain D, Crystal Structure Of Chorismate Synthase
Length = 401
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 86 PEKADGLKALQEAIDTIKAKIEQLGGVFQV 115
PEK + K ID +K K E LGGVF+V
Sbjct: 207 PEKDEEFKTY---IDEVKEKGESLGGVFEV 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,053,804
Number of Sequences: 62578
Number of extensions: 90922
Number of successful extensions: 333
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 10
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)