Query psy18072
Match_columns 174
No_of_seqs 280 out of 1421
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 21:55:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 99.9 1.5E-26 5E-31 195.1 9.5 120 10-142 148-274 (285)
2 1q8k_A Eukaryotic translation 99.9 4.2E-26 1.5E-30 194.0 11.1 145 3-147 1-300 (308)
3 1kl9_A Eukaryotic translation 99.8 4.4E-21 1.5E-25 152.3 10.4 88 1-88 1-89 (182)
4 2a19_A EIF-2- alpha, eukaryoti 99.8 7.7E-20 2.6E-24 144.3 13.3 86 3-88 3-89 (175)
5 3aev_A Translation initiation 99.8 2E-18 7E-23 144.7 9.5 84 5-88 1-85 (275)
6 3cw2_C Translation initiation 99.7 1.9E-18 6.5E-23 144.2 4.8 129 6-135 2-145 (266)
7 1luz_A Protein K3, protein K2; 99.7 5.9E-17 2E-21 114.3 8.7 74 12-87 8-83 (88)
8 2k4k_A GSP13, general stress p 99.6 8.7E-16 3E-20 115.4 9.5 71 14-86 6-77 (130)
9 2k52_A Uncharacterized protein 99.6 1.5E-15 5.1E-20 104.8 9.6 69 14-88 4-73 (80)
10 2eqs_A ATP-dependent RNA helic 99.6 1.3E-15 4.6E-20 110.0 8.6 74 13-87 10-85 (103)
11 2khj_A 30S ribosomal protein S 99.6 2.2E-15 7.6E-20 109.6 6.9 72 14-87 30-102 (109)
12 2cqo_A Nucleolar protein of 40 99.6 2.6E-15 8.9E-20 111.3 7.3 75 12-87 19-96 (119)
13 2khi_A 30S ribosomal protein S 99.6 1.1E-14 3.7E-19 107.1 9.2 73 13-87 28-102 (115)
14 3m7n_A Putative uncharacterize 99.5 6.2E-16 2.1E-20 122.1 0.9 97 11-114 54-158 (179)
15 2nn6_I 3'-5' exoribonuclease C 99.4 1.9E-13 6.5E-18 110.3 7.9 89 11-101 77-174 (209)
16 1go3_E DNA-directed RNA polyme 99.4 5.7E-13 1.9E-17 105.1 9.7 87 13-108 79-182 (187)
17 2je6_I RRP4, exosome complex R 99.4 4.6E-13 1.6E-17 110.8 7.3 79 11-91 70-151 (251)
18 2ba0_A Archeal exosome RNA bin 99.4 1.3E-12 4.3E-17 106.8 9.1 79 11-91 53-132 (229)
19 1wi5_A RRP5 protein homolog; S 99.4 2.3E-12 8E-17 94.9 9.1 78 13-91 19-98 (119)
20 4ayb_E DNA-directed RNA polyme 99.3 2.8E-12 9.6E-17 100.6 8.7 76 13-91 79-170 (180)
21 2z0s_A Probable exosome comple 99.3 1.9E-12 6.5E-17 106.0 7.6 79 11-91 62-144 (235)
22 4aid_A Polyribonucleotide nucl 99.3 1.4E-13 4.8E-18 128.1 0.0 72 13-86 635-706 (726)
23 3cdi_A Polynucleotide phosphor 99.3 3.9E-13 1.3E-17 125.3 0.0 72 13-86 625-696 (723)
24 1y14_B B16, RPB7, DNA-directed 99.2 2.3E-11 7.9E-16 94.8 8.4 64 13-79 81-154 (171)
25 3psi_A Transcription elongatio 99.2 1.4E-11 4.7E-16 120.0 8.0 73 14-88 901-975 (1219)
26 2c35_B Human RPB7, DNA-directe 99.2 3.1E-11 1.1E-15 94.1 8.4 64 13-79 79-154 (172)
27 1e3p_A Guanosine pentaphosphat 99.2 5.9E-13 2E-17 124.5 -3.4 74 13-88 665-742 (757)
28 3bzc_A TEX; helix-turn-helix, 99.2 6.4E-12 2.2E-16 117.9 3.5 72 14-87 653-725 (785)
29 2b8k_G B16, DNA-directed RNA p 99.2 3.7E-11 1.3E-15 97.3 7.2 74 14-91 82-169 (215)
30 3psf_A Transcription elongatio 99.1 3.8E-12 1.3E-16 122.2 0.0 73 14-88 904-978 (1030)
31 3h0g_G DNA-directed RNA polyme 99.1 2.3E-11 7.7E-16 95.2 4.0 64 13-79 82-155 (172)
32 3ayh_B DNA-directed RNA polyme 99.0 1.4E-09 4.8E-14 87.1 7.7 70 3-78 72-160 (203)
33 2nn6_H Exosome complex exonucl 99.0 6.9E-10 2.4E-14 94.2 5.9 79 11-91 91-179 (308)
34 2ckz_B C25, DNA-directed RNA p 98.9 1E-09 3.4E-14 89.0 6.2 72 3-79 72-157 (218)
35 2ja9_A Exosome complex exonucl 98.8 8.8E-09 3E-13 80.9 8.0 72 11-84 3-74 (175)
36 2id0_A Exoribonuclease 2; RNAs 98.8 1.3E-08 4.4E-13 93.8 8.8 78 4-85 550-642 (644)
37 1hh2_P NUSA, N utilization sub 98.6 2.4E-07 8.3E-12 79.6 10.8 89 13-116 132-223 (344)
38 2bx2_L Ribonuclease E, RNAse E 98.6 9.3E-08 3.2E-12 86.1 8.1 64 13-78 43-117 (517)
39 2vnu_D Exosome complex exonucl 98.6 7.5E-08 2.6E-12 90.3 7.0 77 4-85 662-759 (760)
40 3go5_A Multidomain protein wit 98.6 1.8E-07 6.1E-12 78.5 8.2 67 14-86 68-135 (285)
41 2nn6_G Exosome complex exonucl 98.5 1.4E-07 4.6E-12 79.5 6.9 72 11-85 123-194 (289)
42 2wp8_J Exosome complex exonucl 98.5 1E-07 3.5E-12 91.5 6.4 77 4-85 879-976 (977)
43 2bh8_A 1B11; transcription, mo 98.5 6.9E-08 2.4E-12 69.2 4.0 42 12-55 58-99 (101)
44 1k0r_A NUSA; two component arr 98.4 1.1E-06 3.9E-11 75.9 8.7 97 8-116 123-227 (366)
45 2asb_A Transcription elongatio 98.1 1.9E-05 6.5E-10 65.1 10.0 91 14-116 6-104 (251)
46 1jjg_A M156R; beta barrel, S1 97.7 6.8E-05 2.3E-09 52.7 6.2 62 15-78 32-94 (102)
47 2bh8_A 1B11; transcription, mo 97.1 0.0012 4E-08 46.9 6.1 61 15-79 13-76 (101)
48 1yz7_A Probable translation in 96.5 0.0011 3.8E-08 52.3 2.7 85 41-125 91-183 (188)
49 3d0f_A Penicillin-binding 1 tr 96.4 0.013 4.5E-07 41.4 7.3 60 10-71 28-93 (106)
50 2qn6_B Translation initiation 96.0 0.0023 8E-08 45.0 1.6 76 41-116 6-91 (93)
51 2r7d_A Ribonuclease II family 95.2 0.022 7.4E-07 50.5 5.4 59 4-79 395-453 (469)
52 2rf4_A DNA-directed RNA polyme 94.0 0.11 3.8E-06 41.3 6.3 65 13-79 127-203 (214)
53 3cw2_C Translation initiation 92.8 0.019 6.4E-07 47.3 -0.0 77 40-116 178-264 (266)
54 3h8z_A FragIle X mental retard 89.2 0.87 3E-05 33.5 5.9 58 15-72 14-71 (128)
55 1wfq_A UNR protein; beta-barre 88.2 2.4 8.2E-05 29.0 7.3 55 15-76 15-70 (89)
56 2k5n_A Putative cold-shock pro 87.6 2.7 9.2E-05 27.7 7.0 48 19-74 3-52 (74)
57 1c9o_A CSPB, cold-shock protei 87.5 1.9 6.5E-05 27.6 6.1 51 19-75 2-54 (66)
58 3i2z_B RNA chaperone, negative 86.2 1.9 6.4E-05 28.2 5.6 53 18-75 5-59 (71)
59 3a0j_A Cold shock protein; OB- 85.2 1.5 5.2E-05 28.8 4.8 51 19-75 2-54 (73)
60 2ca6_A RAN GTPase-activating p 84.9 0.32 1.1E-05 40.3 1.6 11 128-138 323-333 (386)
61 2kcm_A Cold shock domain famil 84.6 1.5 5E-05 29.1 4.5 49 20-74 2-53 (74)
62 1g6p_A Cold shock protein TMCS 81.7 0.77 2.6E-05 29.6 2.1 49 20-74 2-52 (66)
63 1h95_A CSD, Y-box binding prot 81.3 4.9 0.00017 26.6 6.2 58 16-74 6-65 (79)
64 2ytx_A Cold shock domain-conta 81.0 1.6 5.6E-05 30.3 3.8 51 16-73 16-67 (97)
65 3ts2_A Protein LIN-28 homolog 80.5 3.5 0.00012 30.7 5.7 52 18-75 9-70 (148)
66 3cam_A Cold-shock domain famil 80.3 5.8 0.0002 25.4 6.0 52 19-75 2-55 (67)
67 2yty_A Cold shock domain-conta 78.3 2.7 9.2E-05 28.6 4.1 53 15-74 15-68 (88)
68 1fr3_A MOP, molybdate/tungstat 78.0 3 0.0001 25.7 4.0 51 17-73 7-59 (67)
69 3aqq_A Calcium-regulated heat 77.8 3.7 0.00013 30.8 5.1 53 15-74 59-113 (147)
70 3ulj_A LIN28B, DNA-binding pro 75.2 7.4 0.00025 26.6 5.7 54 18-75 8-69 (90)
71 2ca6_A RAN GTPase-activating p 75.2 1.3 4.6E-05 36.5 2.2 15 129-143 320-334 (386)
72 1yez_A MM1357; MAR30, autostru 73.2 15 0.0005 23.2 6.7 49 14-78 12-60 (68)
73 1gut_A Mopii, molybdate bindin 73.0 3.4 0.00011 25.8 3.3 53 17-73 7-60 (68)
74 1yvc_A MRR5; structure, autost 68.6 15 0.0005 23.5 5.7 49 14-78 14-62 (70)
75 3zzp_A TS9, ribosomal protein 62.1 16 0.00054 24.1 5.0 59 53-111 17-77 (77)
76 1e3p_A Guanosine pentaphosphat 61.6 1 3.5E-05 42.2 -1.4 61 15-79 609-682 (757)
77 3i4o_A Translation initiation 58.8 37 0.0013 22.6 7.6 54 16-75 13-67 (79)
78 3j20_R 30S ribosomal protein S 54.5 39 0.0013 24.1 6.3 65 4-71 20-89 (113)
79 1d7q_A Translation initiation 53.9 63 0.0021 23.9 7.5 55 12-74 27-82 (143)
80 2oqk_A Putative translation in 53.7 56 0.0019 23.1 7.1 54 12-73 28-82 (117)
81 2ytv_A Cold shock domain-conta 53.0 6.6 0.00023 26.1 1.8 51 18-75 8-59 (79)
82 2lss_A Cold shock-like protein 58.0 2.9 9.9E-05 27.1 0.0 52 18-74 4-57 (70)
83 1x65_A UNR protein; cell-free 49.2 6.1 0.00021 26.9 1.2 51 17-75 7-58 (89)
84 3bju_A Lysyl-tRNA synthetase; 48.1 33 0.0011 30.5 6.1 54 18-71 59-117 (521)
85 2zkq_q 40S ribosomal protein S 47.6 25 0.00085 26.6 4.5 65 3-70 58-128 (158)
86 2jk8_A BEPA, putative cell fil 47.3 58 0.002 26.6 7.2 54 12-72 247-300 (302)
87 2xzm_Q Ribosomal protein S17 c 45.8 66 0.0023 24.2 6.6 33 3-36 55-88 (157)
88 2do3_A Transcription elongatio 45.1 8.1 0.00028 25.3 1.3 25 57-81 13-47 (69)
89 4ex5_A Lysine--tRNA ligase; st 42.9 35 0.0012 30.5 5.4 53 18-71 90-145 (529)
90 3cdi_A Polynucleotide phosphor 42.1 5.4 0.00018 37.2 0.0 72 22-98 581-660 (723)
91 2dgy_A MGC11102 protein; EIF-1 41.5 60 0.002 22.9 5.5 57 12-76 11-68 (111)
92 2khj_A 30S ribosomal protein S 41.3 19 0.00065 24.7 2.8 27 53-79 20-46 (109)
93 1jt8_A EIF-1A, probable transl 38.9 48 0.0016 23.1 4.6 54 16-76 19-73 (102)
94 1e1o_A Lysyl-tRNA synthetase, 37.5 62 0.0021 28.6 6.2 54 18-71 68-124 (504)
95 1h9m_A MODG, molybdenum-bindin 37.4 35 0.0012 23.6 3.8 53 17-73 82-135 (145)
96 3a74_A Lysyl-tRNA synthetase; 37.4 42 0.0015 29.5 5.1 53 18-71 60-115 (493)
97 4fp9_B Mterf domain-containing 36.8 7.3 0.00025 32.8 0.0 8 129-136 269-276 (335)
98 2ayu_A Nucleosome assembly pro 34.8 10 0.00035 33.0 0.6 13 62-74 276-289 (417)
99 1mhn_A SurviVal motor neuron p 34.5 78 0.0027 19.2 6.3 39 12-51 14-54 (59)
100 1x54_A Asparaginyl-tRNA synthe 33.2 55 0.0019 28.2 5.1 56 15-71 15-75 (434)
101 3s6w_A Tudor domain-containing 33.0 67 0.0023 19.0 4.1 36 14-50 14-51 (54)
102 2l74_A Putative uncharacterize 31.9 86 0.003 22.5 5.3 22 16-37 46-67 (145)
103 2p9r_A Alpha-2-M, alpha-2-macr 31.5 29 0.001 23.2 2.4 19 60-78 11-29 (102)
104 2kjw_A TS9, 30S ribosomal prot 31.3 85 0.0029 21.4 4.8 60 54-113 18-79 (96)
105 1ywu_A Hypothetical protein PA 29.8 1E+02 0.0035 22.2 5.4 22 16-37 48-69 (149)
106 2vv5_A MSCS, small-conductance 29.6 54 0.0018 26.4 4.1 50 7-59 125-179 (286)
107 3pnw_C Tudor domain-containing 29.4 91 0.0031 20.2 4.6 36 15-51 31-68 (77)
108 2xvc_A ESCRT-III, SSO0910; cel 29.0 42 0.0014 21.2 2.6 41 100-141 13-53 (59)
109 2lj0_A Sorbin and SH3 domain-c 28.2 1E+02 0.0036 19.0 4.6 34 14-50 26-60 (65)
110 1cuk_A RUVA protein; DNA repai 28.2 2E+02 0.0068 22.1 7.1 53 18-79 4-56 (203)
111 2wac_A CG7008-PA; unknown func 27.8 1.9E+02 0.0064 21.5 7.3 35 15-50 65-99 (218)
112 3nem_A Aspartyl-tRNA synthetas 26.5 1.3E+02 0.0046 25.8 6.3 56 15-71 15-75 (438)
113 1k3r_A Conserved protein MT000 26.2 1.4E+02 0.0049 24.1 6.1 56 3-75 90-147 (268)
114 2jpp_A Translational repressor 26.2 27 0.00093 22.8 1.4 22 58-79 8-29 (70)
115 1vpz_A Carbon storage regulato 25.9 28 0.00095 23.0 1.4 23 57-79 19-41 (73)
116 2bti_A Carbon storage regulato 25.8 28 0.00097 22.3 1.4 22 58-79 10-31 (63)
117 1g5v_A SurviVal motor neuron p 25.3 1.6E+02 0.0053 19.7 6.1 37 14-51 23-61 (88)
118 2cqo_A Nucleolar protein of 40 25.0 46 0.0016 23.3 2.6 28 52-79 10-37 (119)
119 3irb_A Uncharacterized protein 24.9 1.3E+02 0.0046 21.7 5.3 45 15-71 81-134 (145)
120 3u5c_L RP41, S18, YS12, 40S ri 24.9 42 0.0014 25.3 2.4 32 4-36 57-89 (156)
121 2d9t_A Tudor domain-containing 24.2 1.5E+02 0.005 19.1 6.1 40 11-51 19-60 (78)
122 1xhj_A Nitrogen fixation prote 24.1 1.7E+02 0.0057 19.6 6.7 50 92-141 9-69 (88)
123 1uwv_A 23S rRNA (uracil-5-)-me 23.9 2.2E+02 0.0074 24.0 7.1 47 15-77 13-59 (433)
124 2hqx_A P100 CO-activator tudor 23.5 1.7E+02 0.0059 22.4 6.0 57 15-77 78-139 (246)
125 1b9m_A Protein (mode); DNA-bin 23.4 1.7E+02 0.006 22.3 6.0 50 16-74 203-256 (265)
126 3fdr_A Tudor and KH domain-con 23.3 1.2E+02 0.004 19.9 4.3 36 15-51 41-77 (94)
127 3our_B EIIA, phosphotransferas 23.0 82 0.0028 24.2 3.8 57 19-77 78-139 (183)
128 2id0_A Exoribonuclease 2; RNAs 22.3 86 0.003 28.4 4.5 50 15-75 18-67 (644)
129 3bbo_G Ribosomal protein L4; l 22.1 16 0.00055 30.4 -0.4 15 126-140 248-262 (293)
130 2bzy_A CRK-like protein, CRKL 21.6 1.4E+02 0.0048 17.9 4.8 33 14-50 23-55 (67)
131 1eov_A ASPRS, aspartyl-tRNA sy 21.6 2E+02 0.0068 25.1 6.5 56 15-71 35-99 (487)
132 3dlm_A Histone-lysine N-methyl 21.4 2.8E+02 0.0097 21.7 6.7 66 4-74 12-81 (213)
133 3au7_A TIAS, putative uncharac 21.4 1.6E+02 0.0054 25.4 5.7 53 16-71 286-343 (402)
134 4a4f_A SurviVal of motor neuro 21.0 1.5E+02 0.0053 18.1 6.3 37 14-51 21-59 (64)
135 4hcz_A PHD finger protein 1; p 20.3 1.7E+02 0.0058 18.3 5.0 35 15-51 16-52 (58)
136 2nn6_I 3'-5' exoribonuclease C 20.0 1.1E+02 0.0039 23.5 4.2 26 12-37 135-162 (209)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.93 E-value=1.5e-26 Score=195.11 Aligned_cols=120 Identities=15% Similarity=0.199 Sum_probs=112.1
Q ss_pred ccCCCCCCEEEEEEEEEecceEEE-EECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeC-CCceeeeccc
Q psy18072 10 EKYPEVEDVVMVTVISIAEMGAYV-HLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDK-EKVMTTVTPE 87 (174)
Q Consensus 10 ~~~p~~GdiV~G~V~~i~~~GafV-~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~-~~~l~ls~~~ 87 (174)
..|+ +|++|.|+|+++++||+|| .|.+ ++.||||+|+++ ..+++||.|+|+|++|++ ++++++|++.
T Consensus 148 ~~~~-~G~~V~g~V~~i~~~G~fV~~i~~--g~~Glih~SEl~--------~~l~~Gd~v~~~V~~id~~d~kI~LSlk~ 216 (285)
T 3go5_A 148 YNNM-QNQNWPAIVYRLKLSGTFVYLPEN--NMLGFIHPSERY--------AEPRLGQVLDARVIGFREVDRTLNLSLKP 216 (285)
T ss_dssp CSCC-TTCEEEEEEEEEETTEEEEEETTT--TEEEEECGGGCS--------SCCCTTCEEEEEEEEEETTTTEEEEECSC
T ss_pred hhCC-CCCEEEEEEEEEeCCcEEEEEeCC--CeEEEEEHHHcc--------ccCCCCCEEEEEEEEEECCCCeEEEEeCh
Confidence 4665 8999999999999999999 9988 899999999998 579999999999999999 8899999977
Q ss_pred ccchHHHHHHHHHHHHHHHhhhCCeeEE--eeCceeEe---ccCHHHHHHHHHHHHHhcc
Q psy18072 88 KADGLKALQEAIDTIKAKIEQLGGVFQV--QMAPKVVT---ASDEAELARQMERAEAENA 142 (174)
Q Consensus 88 k~~g~~~i~~~~~~i~~~l~~~~g~l~~--k~~P~~i~---~~~~~~~k~~~~~l~k~~~ 142 (174)
. ++.++..+++.|++.|+.+||+||+ ||+|+.|+ ++||++||||+|+|+|++.
T Consensus 217 ~--~~~~~~~~a~~il~~L~~~~G~l~~~DkS~pe~I~~~f~~SK~~FKrAiG~L~K~~~ 274 (285)
T 3go5_A 217 R--SFEMLENDAQMILTYLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAGK 274 (285)
T ss_dssp C--CCCCCCHHHHHHHHHHHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTC
T ss_pred h--hhhccchHHHHHHHHHHhcCCeeccCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCc
Confidence 7 7778999999999999999999999 89999999 9999999999999999873
No 2
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.93 E-value=4.2e-26 Score=194.05 Aligned_cols=145 Identities=73% Similarity=1.027 Sum_probs=137.8
Q ss_pred cccchhhccCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCCC---
Q psy18072 3 LSCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEK--- 79 (174)
Q Consensus 3 ~~~r~~~~~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~~--- 79 (174)
+.||||...+|++|++|.|+|++|++|||||.|.+|++++||||+|++++.+++++.+.|++||.|.|+|+++++.+
T Consensus 1 ~~~~f~~~~~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI 80 (308)
T 1q8k_A 1 MSCRFYQHKFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYI 80 (308)
T ss_dssp CCCCSSSSCCCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEE
T ss_pred CceEehhhcCCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEE
Confidence 46999999999999999999999999999999985547999999999999999999999999999999999999854
Q ss_pred --------------------------------------------------------------------------------
Q psy18072 80 -------------------------------------------------------------------------------- 79 (174)
Q Consensus 80 -------------------------------------------------------------------------------- 79 (174)
T Consensus 81 ~LSlK~~~~~p~~~~~~~~~~G~~v~G~V~~v~~~~G~fi~~~~e~l~~~i~~~l~~~~g~~~~~~y~af~~a~~~~~~l 160 (308)
T 1q8k_A 81 DLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSIL 160 (308)
T ss_dssp EEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHTHHHHHHHTTCSSHHHHHHHHHTTTCGGGG
T ss_pred EEEEEecccChHHHHHHHccCCCeeEEEEEEcccccCCccCCCHHHHHHHHHHHHHHHhCCcchhHHHHHHHHcCChhhh
Confidence
Q ss_pred ------------------------------------------------------------------------ceeeeccc
Q psy18072 80 ------------------------------------------------------------------------VMTTVTPE 87 (174)
Q Consensus 80 ------------------------------------------------------------------------~l~ls~~~ 87 (174)
.+++++.+
T Consensus 161 ~~~~i~~~~~~~l~~~~~~~l~~~~vkI~~~iel~~~~~dGIe~Ik~aL~~~~~~~~~~~~i~i~~v~~P~Y~i~~~~~d 240 (308)
T 1q8k_A 161 DSLDLNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTTTLE 240 (308)
T ss_dssp GGCCCCHHHHHHHHHHHHHHTSCCCCEEEECCCEECCSTTTHHHHHHHHHHHHHSSBTTBCEEEEEEETTEEEEEEECSS
T ss_pred hhcCCCHHHHHHHHHHHHHhccCCCceEEEEEEEEecCCChHHHHHHHHHHhhhccCcCccEEEEEECCCEEEEEEEeCC
Confidence 57888999
Q ss_pred ccchHHHHHHHHHHHHHHHhhhCCeeEEeeCceeEeccCHHHHHHHHHHHHHhcccccCC
Q psy18072 88 KADGLKALQEAIDTIKAKIEQLGGVFQVQMAPKVVTASDEAELARQMERAEAENAEVAAD 147 (174)
Q Consensus 88 k~~g~~~i~~~~~~i~~~l~~~~g~l~~k~~P~~i~~~~~~~~k~~~~~l~k~~~e~~gd 147 (174)
+..|...|+++++.|.+.|++.||.+.|+..|++++..++..|.++|+++.++|+|++||
T Consensus 241 ~k~~~~~l~~~~~~i~~~i~~~gG~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (308)
T 1q8k_A 241 RTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQMERLERENAEVDGD 300 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCEECCSSCCEECCSSHHHHHHHHCCSGGGCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCEEEEEECCEecChhhHHHHHHHHHHhhhhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999988
No 3
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.85 E-value=4.4e-21 Score=152.28 Aligned_cols=88 Identities=75% Similarity=1.053 Sum_probs=67.2
Q ss_pred CCcccchhhccCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCC-C
Q psy18072 1 MPLSCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKE-K 79 (174)
Q Consensus 1 ~~~~~r~~~~~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~-~ 79 (174)
|+|+||||..++|++|++|.|+|++|++|||||+|.++++++||||+|++++.++.++++.|++||.|+|+|+++|.. +
T Consensus 1 ~~~~~~~~~~~~p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~ 80 (182)
T 1kl9_A 1 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKG 80 (182)
T ss_dssp --CCCCSSSSSSCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTT
T ss_pred CCeeeEeccccCCCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCC
Confidence 789999999999999999999999999999999996444899999999999999999999999999999999999974 5
Q ss_pred ceeeecccc
Q psy18072 80 VMTTVTPEK 88 (174)
Q Consensus 80 ~l~ls~~~k 88 (174)
.+++|.+..
T Consensus 81 rI~LSlk~~ 89 (182)
T 1kl9_A 81 YIDLSKRRV 89 (182)
T ss_dssp EEEEESTTC
T ss_pred EEEEEEeec
Confidence 678877654
No 4
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.83 E-value=7.7e-20 Score=144.25 Aligned_cols=86 Identities=67% Similarity=1.034 Sum_probs=70.1
Q ss_pred cccchhhccCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCC-Cce
Q psy18072 3 LSCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKE-KVM 81 (174)
Q Consensus 3 ~~~r~~~~~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~-~~l 81 (174)
..|+||.++||++|++|.|+|++|++|||||+|.++++++||||+|++++.++.++++.|++||.|+|+|+++|.. +.+
T Consensus 3 ~~~~~~~~~~p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I 82 (175)
T 2a19_A 3 SHCRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYI 82 (175)
T ss_dssp CCCCSSSSSSCCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEE
T ss_pred cceEEhhhcCCCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeE
Confidence 3699999999999999999999999999999996434799999999999999999999999999999999999985 467
Q ss_pred eeecccc
Q psy18072 82 TTVTPEK 88 (174)
Q Consensus 82 ~ls~~~k 88 (174)
++|++..
T Consensus 83 ~LSlk~~ 89 (175)
T 2a19_A 83 DLSKRRV 89 (175)
T ss_dssp EEESTTC
T ss_pred EEEEEec
Confidence 8877654
No 5
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.75 E-value=2e-18 Score=144.71 Aligned_cols=84 Identities=29% Similarity=0.413 Sum_probs=71.8
Q ss_pred cchhhccCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeC-CCceee
Q psy18072 5 CRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDK-EKVMTT 83 (174)
Q Consensus 5 ~r~~~~~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~-~~~l~l 83 (174)
++||.+.+|++|++|.|+|++|.+|||||.|.+|++++||||+|++++.++.++.+.|++||.|.|+|+++|. .+.+.+
T Consensus 1 ~~~~~~~~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~L 80 (275)
T 3aev_A 1 MPRKAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDL 80 (275)
T ss_dssp ------CCCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEE
T ss_pred CCcccccCCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEE
Confidence 4789999999999999999999999999999865579999999999999999999999999999999999998 567788
Q ss_pred ecccc
Q psy18072 84 VTPEK 88 (174)
Q Consensus 84 s~~~k 88 (174)
|.+..
T Consensus 81 Slk~~ 85 (275)
T 3aev_A 81 SLRRV 85 (275)
T ss_dssp ESTTC
T ss_pred EEeec
Confidence 77653
No 6
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.72 E-value=1.9e-18 Score=144.25 Aligned_cols=129 Identities=20% Similarity=0.326 Sum_probs=98.6
Q ss_pred chhhccCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeC-CCceeee
Q psy18072 6 RFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDK-EKVMTTV 84 (174)
Q Consensus 6 r~~~~~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~-~~~l~ls 84 (174)
|||...+|++|++|.|+|++|.+|||||.|.+|++++||||+|++++.++.++++.|++||.|.|+|++++. .+.+.+|
T Consensus 2 r~~~~~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LS 81 (266)
T 3cw2_C 2 IYSRSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVS 81 (266)
T ss_dssp CCCSSSSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEE
T ss_pred CccccccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEE
Confidence 799999999999999999999999999999844489999999999999999999999999999999999997 5677777
Q ss_pred cccccc-hHHHH------HHHHHHHHHHHhhhCCeeEEeeCceeE----e---ccCHHHHHHHHH
Q psy18072 85 TPEKAD-GLKAL------QEAIDTIKAKIEQLGGVFQVQMAPKVV----T---ASDEAELARQME 135 (174)
Q Consensus 85 ~~~k~~-g~~~i------~~~~~~i~~~l~~~~g~l~~k~~P~~i----~---~~~~~~~k~~~~ 135 (174)
.+.... .+..+ ......+...+...-+ +..++.|..+ . +.+.++||+|++
T Consensus 82 lk~~~~~~~~~~~~~~~~~~~~~~iv~~lae~~~-~~~ee~~~~i~~~l~~~~~~~~~aFk~a~~ 145 (266)
T 3cw2_C 82 LKKVTDDERRKKNLQWKKIQRLDKILELVSQKLK-LSEKDAWEQVAWKLEAKYGDPITAIEKAVK 145 (266)
T ss_dssp STTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHTHHHHHTTSSCHHHHHHHHHH
T ss_pred EEecchhhHHHHHHhccccCccceeeeehhhhCC-CCHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 765421 22111 1133344444442222 2235666444 2 678899999998
No 7
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.70 E-value=5.9e-17 Score=114.32 Aligned_cols=74 Identities=27% Similarity=0.376 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEce-ecchhhhhccccccCCCCEEEEEEEEEeCC-Cceeeeccc
Q psy18072 12 YPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLS-ELSRRRIRSINKLIRVGKTEPVVVIRVDKE-KVMTTVTPE 87 (174)
Q Consensus 12 ~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iS-els~~~v~~~~~~l~vGd~V~vrVi~Vd~~-~~l~ls~~~ 87 (174)
.|++|+++.|+|+ |++|||||+|.++++++||||+| +++++++.++++.+ +||.|+|+|+++|.. +.+.+|.+.
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~ 83 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKR 83 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEee
Confidence 3568999999999 99999999998654699999999 99999999999999 999999999999984 567776643
No 8
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.64 E-value=8.7e-16 Score=115.39 Aligned_cols=71 Identities=28% Similarity=0.431 Sum_probs=66.2
Q ss_pred CCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeC-CCceeeecc
Q psy18072 14 EVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDK-EKVMTTVTP 86 (174)
Q Consensus 14 ~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~-~~~l~ls~~ 86 (174)
++|++|.|+|++|++|||||.|.+ +++||||+|++++.++.++.+.|++||.|+|+|++|+. .+.+.+|++
T Consensus 6 ~vG~iv~G~V~~i~~~G~FV~l~~--~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk 77 (130)
T 2k4k_A 6 EVGSVYTGKVTGLQAYGAFVALDE--ETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIR 77 (130)
T ss_dssp CTTCEEEEEEEEEETTEEEEEEET--TEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESH
T ss_pred CCCCEEEEEEEEEeCCeEEEEECC--CcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEe
Confidence 499999999999999999999988 89999999999999999999999999999999999998 667777764
No 9
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.63 E-value=1.5e-15 Score=104.79 Aligned_cols=69 Identities=22% Similarity=0.279 Sum_probs=62.4
Q ss_pred CCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCC-Cceeeecccc
Q psy18072 14 EVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKE-KVMTTVTPEK 88 (174)
Q Consensus 14 ~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~-~~l~ls~~~k 88 (174)
++|++|.|+|+++++|||||.|.+ +++||||+|++++.++ +.|++||.|+|+|++++.+ +.+.+|.+..
T Consensus 4 ~~G~iv~G~V~~v~~~G~fV~l~~--~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~ 73 (80)
T 2k52_A 4 EPGKFYKGVVTRIEKYGAFINLNE--QVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPL 73 (80)
T ss_dssp CTTCEEEEEEEEEETTEEEEEEET--TEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSC
T ss_pred CCCCEEEEEEEEEeCCEEEEEECC--CCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 589999999999999999999988 8999999999997765 6899999999999999997 7788877554
No 10
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=109.97 Aligned_cols=74 Identities=23% Similarity=0.405 Sum_probs=65.0
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCC-CeEEEEEceec-chhhhhccccccCCCCEEEEEEEEEeCCCceeeeccc
Q psy18072 13 PEVEDVVMVTVISIAEMGAYVHLLEYN-NIEGMILLSEL-SRRRIRSINKLIRVGKTEPVVVIRVDKEKVMTTVTPE 87 (174)
Q Consensus 13 p~~GdiV~G~V~~i~~~GafV~L~~~~-~~~GlI~iSel-s~~~v~~~~~~l~vGd~V~vrVi~Vd~~~~l~ls~~~ 87 (174)
+++|++|.|+|++|++|||||+|.++. +++||||+|++ ++.++.++.+.|++||.|+|+|++++. +.+.+|.+.
T Consensus 10 ~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~-~~i~LSlk~ 85 (103)
T 2eqs_A 10 PTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG-TKTSLSMKD 85 (103)
T ss_dssp CCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET-TEEEEESTT
T ss_pred CCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC-CeeEEEEee
Confidence 459999999999999999999998642 69999999999 666788888999999999999999998 567777654
No 11
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.58 E-value=2.2e-15 Score=109.63 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=66.7
Q ss_pred CCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCCC-ceeeeccc
Q psy18072 14 EVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEK-VMTTVTPE 87 (174)
Q Consensus 14 ~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~~-~l~ls~~~ 87 (174)
++|++|.|+|++|.+|||||.|.+ +++||||+|++++.++.++.+.|++||.|+|+|++++..+ .+.+|.+.
T Consensus 30 ~~G~iv~G~V~~v~~~G~fV~l~~--~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~LS~k~ 102 (109)
T 2khj_A 30 KKGAIVTGKVTAVDAKGATVELAD--GVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRA 102 (109)
T ss_dssp CSSSEEEEEEEEECSSCEEEECST--TCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEEETTS
T ss_pred CCCCEEEEEEEEEECCeEEEEECC--CCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 499999999999999999999987 8999999999999999999999999999999999999875 68887754
No 12
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.6e-15 Score=111.30 Aligned_cols=75 Identities=15% Similarity=0.268 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCC---Cceeeeccc
Q psy18072 12 YPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKE---KVMTTVTPE 87 (174)
Q Consensus 12 ~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~---~~l~ls~~~ 87 (174)
.+++|++|.|+|++|++|||||.|.++ +++||||+|++++.++.++.+.|++||.|+|+|++++.. +.+.++++.
T Consensus 19 ~~~vG~iv~G~V~~I~~fGaFV~l~g~-~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~ 96 (119)
T 2cqo_A 19 LPALYTIFQGEVAMVTDYGAFIKIPGC-RKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKV 96 (119)
T ss_dssp SCCTTCEEEEEEEEEETTEEEEECTTC-SSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTT
T ss_pred ccCCCCEEEEEEEEEeCceEEEEECCC-cEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEee
Confidence 346899999999999999999999652 269999999999999999999999999999999999975 367777654
No 13
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.57 E-value=1.1e-14 Score=107.08 Aligned_cols=73 Identities=19% Similarity=0.358 Sum_probs=65.3
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchh-hhhccccccCCCCEEEEEEEEEeC-CCceeeeccc
Q psy18072 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRR-RIRSINKLIRVGKTEPVVVIRVDK-EKVMTTVTPE 87 (174)
Q Consensus 13 p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~-~v~~~~~~l~vGd~V~vrVi~Vd~-~~~l~ls~~~ 87 (174)
+++|++|.|+|++|++||+||.|.+ +++||||+|++++. ++.++.+.|++||.|+|+|++++. .+.+.++++.
T Consensus 28 ~~~G~~~~G~V~~v~~~G~FV~l~~--~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~lslk~ 102 (115)
T 2khi_A 28 YPEGTKLTGRVTNLTDYGCFVEIEE--GVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ 102 (115)
T ss_dssp SCSSCEEEEEEEEEETTEEEEECST--TCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEECCCC
T ss_pred CCCCCEEEEEEEEEECCEEEEEECC--CCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEEEEe
Confidence 4599999999999999999999988 89999999999874 778888999999999999999998 4577777654
No 14
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=99.54 E-value=6.2e-16 Score=122.06 Aligned_cols=97 Identities=18% Similarity=0.234 Sum_probs=84.0
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCC--------CCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCCCcee
Q psy18072 11 KYPEVEDVVMVTVISIAEMGAYVHLLEY--------NNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEKVMT 82 (174)
Q Consensus 11 ~~p~~GdiV~G~V~~i~~~GafV~L~~~--------~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~~~l~ 82 (174)
..|+ |++|.|+|++|.++||||+|..+ .+++|+||+|++++.++.++.+.|++||.|.|+|++ +.+.
T Consensus 54 y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~----~~i~ 128 (179)
T 3m7n_A 54 EIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG----DNLR 128 (179)
T ss_dssp CCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE----TTTE
T ss_pred ccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC----CeEE
Confidence 5787 99999999999999999999752 148999999999999999999999999999999998 6799
Q ss_pred eecccccchHHHHHHHHHHHHHHHhhhCCeeE
Q psy18072 83 TVTPEKADGLKALQEAIDTIKAKIEQLGGVFQ 114 (174)
Q Consensus 83 ls~~~k~~g~~~i~~~~~~i~~~l~~~~g~l~ 114 (174)
||++...+| ++.+.|..|+..|...+..|+
T Consensus 129 LS~k~~~lG--vv~a~~~~~g~~m~~~~~~~~ 158 (179)
T 3m7n_A 129 LSTKEEEMG--VLRALCSNCKTEMVREGDILK 158 (179)
T ss_dssp EECCSTTCE--EEECBCTTTCCBCEECSSSEE
T ss_pred EEEecCCCC--EEEecccccCCceEECCCEEE
Confidence 999998777 788888888887766554443
No 15
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.44 E-value=1.9e-13 Score=110.34 Aligned_cols=89 Identities=25% Similarity=0.263 Sum_probs=76.8
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCC------CCeEEEEEceecchhhhh--ccccccCCCCEEEEEEEEEeCCC-ce
Q psy18072 11 KYPEVEDVVMVTVISIAEMGAYVHLLEY------NNIEGMILLSELSRRRIR--SINKLIRVGKTEPVVVIRVDKEK-VM 81 (174)
Q Consensus 11 ~~p~~GdiV~G~V~~i~~~GafV~L~~~------~~~~GlI~iSels~~~v~--~~~~~l~vGd~V~vrVi~Vd~~~-~l 81 (174)
..|++|++|.|+|++|+++||||.|..+ .+++|+||+|++++.++. ++.+.|++||.|+|+|++++..+ .+
T Consensus 77 y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i 156 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNY 156 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEE
T ss_pred CCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeE
Confidence 3578999999999999999999998521 157999999999988887 89999999999999999999875 59
Q ss_pred eeecccccchHHHHHHHHHH
Q psy18072 82 TTVTPEKADGLKALQEAIDT 101 (174)
Q Consensus 82 ~ls~~~k~~g~~~i~~~~~~ 101 (174)
.||++...+| ++.+.|+.
T Consensus 157 ~LS~k~~~lG--Vv~A~c~~ 174 (209)
T 2nn6_I 157 LLTTAENELG--VVVAHSES 174 (209)
T ss_dssp EEECCSSSCE--ECCCBCSS
T ss_pred EEEEecCCCc--EEEEEcCC
Confidence 9999998777 66776654
No 16
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.43 E-value=5.7e-13 Score=105.07 Aligned_cols=87 Identities=16% Similarity=0.362 Sum_probs=71.3
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhh-----------ccccccCCCCEEEEEEEEEeCC---
Q psy18072 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIR-----------SINKLIRVGKTEPVVVIRVDKE--- 78 (174)
Q Consensus 13 p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~-----------~~~~~l~vGd~V~vrVi~Vd~~--- 78 (174)
|.+|++|.|+|+++++||+||+|.+ .+||||+|++++.++. ++...|++||.|+|+|++++..
T Consensus 79 ~~~Gev~~G~V~~v~~~G~fV~l~~---~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 155 (187)
T 1go3_E 79 PEMYELIEGEVVDVVEFGSFVRLGP---LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER 155 (187)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECSS---SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--
T ss_pred cCCCCEEEEEEEEEeCcEEEEEEcC---ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCC
Confidence 4589999999999999999999954 8999999999987765 6788999999999999999974
Q ss_pred ---CceeeecccccchHHHHHHHHHHHHHHHhh
Q psy18072 79 ---KVMTTVTPEKADGLKALQEAIDTIKAKIEQ 108 (174)
Q Consensus 79 ---~~l~ls~~~k~~g~~~i~~~~~~i~~~l~~ 108 (174)
..+.+|.+...+|. ++|..+..++
T Consensus 156 p~~~~I~lS~k~~~LG~------~~w~~~~~~~ 182 (187)
T 1go3_E 156 KRGSKIALTMRQPYLGK------LEWIEEEKAK 182 (187)
T ss_dssp ---CEEEEECCSTTCEE------HHHHHHHHHH
T ss_pred CCccEEEEEEcCCCCCc------HHHHhhhhhh
Confidence 26788887776663 3555544443
No 17
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=99.39 E-value=4.6e-13 Score=110.83 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=72.1
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhh---hccccccCCCCEEEEEEEEEeCCCceeeeccc
Q psy18072 11 KYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRI---RSINKLIRVGKTEPVVVIRVDKEKVMTTVTPE 87 (174)
Q Consensus 11 ~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v---~~~~~~l~vGd~V~vrVi~Vd~~~~l~ls~~~ 87 (174)
..|++||+|.|+|+++.++||||.|.. .+.|+||+|+++..++ .++++.|++||.|.|+|++++.++.+.||++.
T Consensus 70 y~p~~GDiV~G~V~~v~~~ga~VdI~~--~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~ 147 (251)
T 2je6_I 70 YYPKINDIVIGLVEDVEIYGWVVDIKA--PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKG 147 (251)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSS--SSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCS
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEcCC--CeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEcc
Confidence 467899999999999999999999987 7899999999998776 77889999999999999999988889999988
Q ss_pred ccch
Q psy18072 88 KADG 91 (174)
Q Consensus 88 k~~g 91 (174)
+.+|
T Consensus 148 ~~lG 151 (251)
T 2je6_I 148 KDLG 151 (251)
T ss_dssp TTCE
T ss_pred ccCC
Confidence 7666
No 18
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=99.38 E-value=1.3e-12 Score=106.79 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=71.7
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchh-hhhccccccCCCCEEEEEEEEEeCCCceeeeccccc
Q psy18072 11 KYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRR-RIRSINKLIRVGKTEPVVVIRVDKEKVMTTVTPEKA 89 (174)
Q Consensus 11 ~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~-~v~~~~~~l~vGd~V~vrVi~Vd~~~~l~ls~~~k~ 89 (174)
..|++||+|.|+|+++.++||||.|.. .+.|+||+|+++.. +..++++.|++||.|.|+|++++.++.+.||++.+.
T Consensus 53 y~p~~GDiV~G~V~~v~~~~a~V~I~~--~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~~~ 130 (229)
T 2ba0_A 53 YTPSVGDVVIGIIREVAANGWAVDIYS--PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKDRI 130 (229)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSS--SSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCSSS
T ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCC--CeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCCCcEEEEEcccc
Confidence 468899999999999999999999987 68999999999964 677889999999999999999998888999998876
Q ss_pred ch
Q psy18072 90 DG 91 (174)
Q Consensus 90 ~g 91 (174)
+|
T Consensus 131 lG 132 (229)
T 2ba0_A 131 CR 132 (229)
T ss_dssp CE
T ss_pred CC
Confidence 66
No 19
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.37 E-value=2.3e-12 Score=94.88 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=61.8
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecc-hhhhhccccccCCCCEEEEEEEEEeCC-Cceeeecccccc
Q psy18072 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELS-RRRIRSINKLIRVGKTEPVVVIRVDKE-KVMTTVTPEKAD 90 (174)
Q Consensus 13 p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels-~~~v~~~~~~l~vGd~V~vrVi~Vd~~-~~l~ls~~~k~~ 90 (174)
+++|++|.|+|++|++|||||+|.. ++..||+|.++.. +.++.++.+.|++||.|+|+|++++.. +.+.++.+....
T Consensus 19 l~~G~i~~G~V~~v~~fG~fV~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~~~l 97 (119)
T 1wi5_A 19 LKPGMLLTGTVSSLEDHGYLVDIGV-DGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSEV 97 (119)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECCC-SSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCCCCS
T ss_pred CCCCCEEEEEEEEEeCceEEEEECC-CCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEchhhc
Confidence 4599999999999999999999982 1566666655532 334557889999999999999999975 578888877655
Q ss_pred h
Q psy18072 91 G 91 (174)
Q Consensus 91 g 91 (174)
+
T Consensus 98 ~ 98 (119)
T 1wi5_A 98 S 98 (119)
T ss_dssp C
T ss_pred c
Confidence 5
No 20
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.34 E-value=2.8e-12 Score=100.59 Aligned_cols=76 Identities=22% Similarity=0.389 Sum_probs=64.3
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhh-----------hccccccCCCCEEEEEEEEEeCCC--
Q psy18072 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRI-----------RSINKLIRVGKTEPVVVIRVDKEK-- 79 (174)
Q Consensus 13 p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v-----------~~~~~~l~vGd~V~vrVi~Vd~~~-- 79 (174)
|.+|+++.|+|+++++||+||++.. .+||+|+|+++++++ ++....+++||.|+|||++++.+.
T Consensus 79 p~~Gev~~G~V~~v~~~G~fv~l~~---~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~ 155 (180)
T 4ayb_E 79 PVVQEVVEGEVLQVDNYGVFVNLGP---MDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTG 155 (180)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECSS---SEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC----
T ss_pred ccCCCEEEEEEeeeccceEEEEECC---ccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCc
Confidence 4589999999999999999999864 799999999998876 466788999999999999998642
Q ss_pred ---ceeeecccccch
Q psy18072 80 ---VMTTVTPEKADG 91 (174)
Q Consensus 80 ---~l~ls~~~k~~g 91 (174)
.+.+|.+.+.+|
T Consensus 156 ~~~rI~ls~k~~gLG 170 (180)
T 4ayb_E 156 RLPRIALTMRQPYLG 170 (180)
T ss_dssp ---CEEEECCSTTCE
T ss_pred ccCcEEEEcCCCCCC
Confidence 577777776555
No 21
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=99.33 E-value=1.9e-12 Score=106.00 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=69.9
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchh----hhhccccccCCCCEEEEEEEEEeCCCceeeecc
Q psy18072 11 KYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRR----RIRSINKLIRVGKTEPVVVIRVDKEKVMTTVTP 86 (174)
Q Consensus 11 ~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~----~v~~~~~~l~vGd~V~vrVi~Vd~~~~l~ls~~ 86 (174)
..|++||+|.|+|+++.++||||.|.. .+.|+||+|+++.+ +..++++.|++||.|.|+|++++.++.+.||++
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~~--~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k 139 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDINS--PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQ 139 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECSS--SSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECC
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCC--CeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEe
Confidence 468899999999999999999999987 79999999999863 456788899999999999999998878888887
Q ss_pred cccch
Q psy18072 87 EKADG 91 (174)
Q Consensus 87 ~k~~g 91 (174)
.+.+|
T Consensus 140 ~~~lG 144 (235)
T 2z0s_A 140 GEGLG 144 (235)
T ss_dssp SSSCE
T ss_pred cccCc
Confidence 77555
No 22
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.32 E-value=1.4e-13 Score=128.14 Aligned_cols=72 Identities=18% Similarity=0.380 Sum_probs=0.0
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCCCceeeecc
Q psy18072 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEKVMTTVTP 86 (174)
Q Consensus 13 p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~~~l~ls~~ 86 (174)
+++|++|.|+|++|.+|||||+|.+ +++||||+|++++.|+.++.+.|++||.|+|||+++|..+++++|.+
T Consensus 635 ~~vG~v~~G~V~~I~~fGaFVel~~--g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~~grI~LS~K 706 (726)
T 4aid_A 635 AEVGKIYDGKVVKVVDFGAFVNFFG--AKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMK 706 (726)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hcCCcEEEEEEEEEeccEEEEEECC--CcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECCCCcEEEEEe
Confidence 3599999999999999999999988 89999999999999999999999999999999999998777777654
No 23
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.27 E-value=3.9e-13 Score=125.26 Aligned_cols=72 Identities=25% Similarity=0.469 Sum_probs=0.0
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCCCceeeecc
Q psy18072 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEKVMTTVTP 86 (174)
Q Consensus 13 p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~~~l~ls~~ 86 (174)
+++|++|.|+|++|.+||+||+|.+ +++||||+|++++.|+.++.+.|++||.|+|||++++..+++++|.+
T Consensus 625 ~~vG~i~~G~V~~i~~fGaFVel~~--g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k 696 (723)
T 3cdi_A 625 IEVGRVYTGKVTRIVDFGAFVAIGG--GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 696 (723)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hhcCcEEEEEEEEEecceEEEEeCC--CceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECCCCcEEEEEE
Confidence 3599999999999999999999987 89999999999999999999999999999999999998777777765
No 24
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=99.23 E-value=2.3e-11 Score=94.84 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=53.0
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhh----hcc------ccccCCCCEEEEEEEEEeCCC
Q psy18072 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRI----RSI------NKLIRVGKTEPVVVIRVDKEK 79 (174)
Q Consensus 13 p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v----~~~------~~~l~vGd~V~vrVi~Vd~~~ 79 (174)
|.+|+++.|+|+++++||+||+|.. .+||||+|++++.+. .++ .+.+++||.|+|||++++.+.
T Consensus 81 ~~~Gev~~G~V~~v~~fG~FV~l~~---~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~ 154 (171)
T 1y14_B 81 PFKGEVVDGTVVSCSQHGFEVQVGP---MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQV 154 (171)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETT---EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEET
T ss_pred CCCCCEEEEEEEEEecCEEEEEecC---eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCC
Confidence 3489999999999999999999964 899999999975432 111 267999999999999999764
No 25
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.4e-11 Score=120.01 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=66.1
Q ss_pred CCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhh-hhccccccCCCCEEEEEEEEEeCC-Cceeeecccc
Q psy18072 14 EVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRR-IRSINKLIRVGKTEPVVVIRVDKE-KVMTTVTPEK 88 (174)
Q Consensus 14 ~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~-v~~~~~~l~vGd~V~vrVi~Vd~~-~~l~ls~~~k 88 (174)
++|++|.|+|++|++|||||.|.. +++||||+|++++.+ +.++.+.|++||.|+|+|++||.. +.+.+|++..
T Consensus 901 ~~G~iv~G~V~~V~~fGaFV~L~~--gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 975 (1219)
T 3psi_A 901 FKGSIIPVRVERFWHNDIICTTNS--EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 975 (1219)
T ss_dssp CTTCEEEEEEEEECSSCEEEECTT--SCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHH
T ss_pred CCCCEEEEEEEEEecceEEEEeCC--CceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHH
Confidence 489999999999999999999987 899999999999998 789999999999999999999964 5677776544
No 26
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=99.22 E-value=3.1e-11 Score=94.06 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=53.2
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhh----h--------ccccccCCCCEEEEEEEEEeCCC
Q psy18072 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRI----R--------SINKLIRVGKTEPVVVIRVDKEK 79 (174)
Q Consensus 13 p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v----~--------~~~~~l~vGd~V~vrVi~Vd~~~ 79 (174)
|.+|+++.|+|+++++||+||+|.. .+||||+|++++.+. . .....+++||.|+|||++++...
T Consensus 79 ~~~Gev~~G~V~~v~~fG~fV~l~~---~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~ 154 (172)
T 2c35_B 79 PFKGEVVDAVVTQVNKVGLFTEIGP---MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDK 154 (172)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETT---EEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEET
T ss_pred CCCCCEEEEEEEEEeCCEEEEEECC---EEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCC
Confidence 3589999999999999999999953 779999999975432 1 11458999999999999999764
No 27
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.19 E-value=5.9e-13 Score=124.54 Aligned_cols=74 Identities=22% Similarity=0.513 Sum_probs=37.7
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceec----chhhhhccccccCCCCEEEEEEEEEeCCCceeeecccc
Q psy18072 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSEL----SRRRIRSINKLIRVGKTEPVVVIRVDKEKVMTTVTPEK 88 (174)
Q Consensus 13 p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSel----s~~~v~~~~~~l~vGd~V~vrVi~Vd~~~~l~ls~~~k 88 (174)
+++|++|.|+|++|.+||+||+|.+ +++||||+|++ ++.|+.++.+.|++||.|+|+|+++|..++++++.+..
T Consensus 665 ~~vG~i~~G~V~~i~~fGaFV~l~~--g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~~ 742 (757)
T 1e3p_A 665 PEVGERILGSVVKTTTFGAFVSLLP--GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSLIPVIE 742 (757)
T ss_dssp --------CBEEECC-CSCEECCC-----CCCCC-------------------CCSSCBCCCCCCCCCSSCC--------
T ss_pred cccccEEEEEEEEccccEEEEEEcC--CcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECCCCCEEEEEecC
Confidence 4599999999999999999999987 89999999999 99999999999999999999999999877787776543
No 28
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=99.18 E-value=6.4e-12 Score=117.92 Aligned_cols=72 Identities=19% Similarity=0.306 Sum_probs=66.0
Q ss_pred CCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCC-Cceeeeccc
Q psy18072 14 EVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKE-KVMTTVTPE 87 (174)
Q Consensus 14 ~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~-~~l~ls~~~ 87 (174)
++|++|.|+|++|++||+||.|.. +++||||+|++++.++.++.+.|++||.|+|+|++||.. +.+.+|++.
T Consensus 653 ~vG~iv~G~V~~V~~fGaFV~l~~--~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~ 725 (785)
T 3bzc_A 653 KPGMVLEGVVTNVTNFGAFVDIGV--HQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRM 725 (785)
T ss_dssp CTTCBCCCEEEEEETTEEEEECSS--SSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSS
T ss_pred CCCCEEEEEEEEEecCCeEEEeCC--CcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEec
Confidence 489999999999999999999977 799999999999999999999999999999999999984 567777764
No 29
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=99.18 E-value=3.7e-11 Score=97.33 Aligned_cols=74 Identities=15% Similarity=0.071 Sum_probs=58.6
Q ss_pred CCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhcc----------ccccCCCCEEEEEEEEEeCCC----
Q psy18072 14 EVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSI----------NKLIRVGKTEPVVVIRVDKEK---- 79 (174)
Q Consensus 14 ~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~----------~~~l~vGd~V~vrVi~Vd~~~---- 79 (174)
++|+++.|+|+++++||+||+|.. .+||||+|++++.+..++ .+.+++||.|+|||++++.+.
T Consensus 82 ~vGev~~G~V~~vt~fG~FVelg~---~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~ 158 (215)
T 2b8k_G 82 FKGEVVDGTVVSCSQHGFEVQVGP---MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIH 158 (215)
T ss_dssp CTTEEEEEEEEEEETTEEEEECTT---SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEE
T ss_pred CCCCEEEEEEEEEecceEEEEecC---cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccE
Confidence 589999999999999999999964 799999999975433111 267999999999999999864
Q ss_pred ceeeecccccch
Q psy18072 80 VMTTVTPEKADG 91 (174)
Q Consensus 80 ~l~ls~~~k~~g 91 (174)
.+. |.+...+|
T Consensus 159 ~Ig-Smk~~~LG 169 (215)
T 2b8k_G 159 AIG-SIKEDYLG 169 (215)
T ss_dssp EEE-ECCSTTCE
T ss_pred EEE-EcCCCCCC
Confidence 344 55554444
No 30
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=99.15 E-value=3.8e-12 Score=122.24 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhh-hhccccccCCCCEEEEEEEEEeC-CCceeeecccc
Q psy18072 14 EVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRR-IRSINKLIRVGKTEPVVVIRVDK-EKVMTTVTPEK 88 (174)
Q Consensus 14 ~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~-v~~~~~~l~vGd~V~vrVi~Vd~-~~~l~ls~~~k 88 (174)
++|++|.|+|++|++|||||.|.. +++||||+|++++.+ +.++.+.|++||.|+|+|++|+. .+.+.+|++..
T Consensus 904 ~~G~iv~G~V~~V~~fGaFV~L~~--gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 978 (1030)
T 3psf_A 904 FKGSIIPVRVERFWHNDIICTTNS--EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 978 (1030)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cCCCEEEEEEEEEccCeEEEEeCC--CcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEechH
Confidence 489999999999999999999987 899999999999998 88999999999999999999995 45677776544
No 31
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.13 E-value=2.3e-11 Score=95.16 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=54.5
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhh----------hccccccCCCCEEEEEEEEEeCCC
Q psy18072 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRI----------RSINKLIRVGKTEPVVVIRVDKEK 79 (174)
Q Consensus 13 p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v----------~~~~~~l~vGd~V~vrVi~Vd~~~ 79 (174)
|.+|+++.|+|+++++||+||+|.. .+||||+|++++.+. ++....+++||.|+|||++++.+.
T Consensus 82 p~~Gev~~G~V~~v~~fG~FV~l~~---~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~ 155 (172)
T 3h0g_G 82 PFRGEVVDAIVTTVNKMGFFANIGP---LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDA 155 (172)
T ss_dssp CCTTCEEECCCCEEETTEEECCBTT---BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESS
T ss_pred cCCCCEEEEEEEEEEcceEEEEeCC---eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCC
Confidence 3489999999999999999999964 679999999975533 233578999999999999999875
No 32
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.96 E-value=1.4e-09 Score=87.11 Aligned_cols=70 Identities=9% Similarity=0.087 Sum_probs=58.3
Q ss_pred cccchhhccCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhh-------------------hccccccC
Q psy18072 3 LSCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRI-------------------RSINKLIR 63 (174)
Q Consensus 3 ~~~r~~~~~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v-------------------~~~~~~l~ 63 (174)
++|.|+.+ .+|+++.|+|++++++|+||+| + .++||+|++++..+++ ++....++
T Consensus 72 fk~~~f~p---~~GEv~~G~Vs~vt~~GifV~l-g--~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~ 145 (203)
T 3ayh_B 72 FRLIIFRP---FRGEVMLGKIKSCSEEGIRVTI-S--FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFD 145 (203)
T ss_dssp EEEEEECC---CTTCEEEEEEEEEETTEEEEEC-S--SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECC
T ss_pred EEEEEEcc---CCCCEEEEEEEEEeccEEEEEE-e--CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEc
Confidence 35665553 4799999999999999999999 4 4899999999977654 44567899
Q ss_pred CCCEEEEEEEEEeCC
Q psy18072 64 VGKTEPVVVIRVDKE 78 (174)
Q Consensus 64 vGd~V~vrVi~Vd~~ 78 (174)
+||.|++||++++..
T Consensus 146 ~Gd~VrvrV~~v~~~ 160 (203)
T 3ayh_B 146 IDEEIRFQIESEDFV 160 (203)
T ss_dssp TTCEEEEEEEEEEEC
T ss_pred CCCEEEEEEEEEEcc
Confidence 999999999999874
No 33
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.95 E-value=6.9e-10 Score=94.22 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=66.0
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchh----hh------hccccccCCCCEEEEEEEEEeCCCc
Q psy18072 11 KYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRR----RI------RSINKLIRVGKTEPVVVIRVDKEKV 80 (174)
Q Consensus 11 ~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~----~v------~~~~~~l~vGd~V~vrVi~Vd~~~~ 80 (174)
..|++||+|.|+|+++.+++|||.|.. ...|++|+|+++.. |. ..++..|++||.|.|||++++.+..
T Consensus 91 Y~P~vGDvViG~Vt~V~~~~a~VdI~s--~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~~~~ 168 (308)
T 2nn6_H 91 YIGEVGDIVVGRITEVQQKRWKVETNS--RLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGA 168 (308)
T ss_dssp CCCCSSBCCCEEEEEEETTEEEEECSS--SSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTE
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEECC--CcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCCCCC
Confidence 478899999999999999999999986 57899999998642 22 2456899999999999999998888
Q ss_pred eeeecccccch
Q psy18072 81 MTTVTPEKADG 91 (174)
Q Consensus 81 l~ls~~~k~~g 91 (174)
+.+|++...+|
T Consensus 169 i~LStr~~~LG 179 (308)
T 2nn6_H 169 VSLHTRSLKYG 179 (308)
T ss_dssp EEEECCSSTTC
T ss_pred EEEEecCcCCc
Confidence 99988877555
No 34
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.94 E-value=1e-09 Score=89.04 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=59.0
Q ss_pred cccchhhccCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhh--------------hccccccCCCCEE
Q psy18072 3 LSCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRI--------------RSINKLIRVGKTE 68 (174)
Q Consensus 3 ~~~r~~~~~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v--------------~~~~~~l~vGd~V 68 (174)
++|.||.+ + +|+++.|+|++++++|+||+|.+ .++||+|++++..+++ +.....|++||.|
T Consensus 72 fk~~~f~p-~--vGEv~~G~Is~Vt~fGifVeL~g--~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~V 146 (218)
T 2ckz_B 72 FRAVVFKP-F--LGEIVTGWISKCTAEGIKVSLLG--IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKI 146 (218)
T ss_dssp EEEEEECC-C--TTCEEEEEEEEEETTEEEEECTT--SCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEE
T ss_pred EEEEEecC-C--CCCEEEEEEEEEccCcEEEEccC--ccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEE
Confidence 35665544 3 79999999999999999999976 5899999999976553 3346789999999
Q ss_pred EEEEEEEeCCC
Q psy18072 69 PVVVIRVDKEK 79 (174)
Q Consensus 69 ~vrVi~Vd~~~ 79 (174)
++||++++...
T Consensus 147 rvrV~~v~~~~ 157 (218)
T 2ckz_B 147 RFRIEREVFVD 157 (218)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEEccc
Confidence 99999999764
No 35
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=98.83 E-value=8.8e-09 Score=80.91 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=62.0
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCCCceeee
Q psy18072 11 KYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEKVMTTV 84 (174)
Q Consensus 11 ~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~~~l~ls 84 (174)
+.|++||+|.|+|+.+..++|+|.|..+ .+.|+||++.+. ...+..+..|++||.|.|||.+++.+..+.++
T Consensus 3 Y~P~~gDvViG~V~~v~~~~~~VdI~~~-~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~~~~~~Lt 74 (175)
T 2ja9_A 3 YIPSVNDFVIGVIIGTFSDSYKVSLQNF-SSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEKELEAEIE 74 (175)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEESSTT-SCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCTTSCCEEE
T ss_pred ccCCCcCEEEEEEEEEECcEEEEEECCC-CccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecCCCceEEE
Confidence 4577999999999999999999999752 378999999886 33456778999999999999999987777887
No 36
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.79 E-value=1.3e-08 Score=93.84 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=62.5
Q ss_pred ccchhhccCCCCCC--EEEEEEEEEecceEEEEECCCCCeEEEEEceecch--hhhh----------ccccccCCCCEEE
Q psy18072 4 SCRFYAEKYPEVED--VVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSR--RRIR----------SINKLIRVGKTEP 69 (174)
Q Consensus 4 ~~r~~~~~~p~~Gd--iV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~--~~v~----------~~~~~l~vGd~V~ 69 (174)
.|+|+... +|+ ++.|+|++|++||+||.|.++ +++||||+|+++. +++. +....|++||.|+
T Consensus 550 ~~~~l~~~---vGe~~~f~g~V~~V~~~G~fV~L~~~-gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~ 625 (644)
T 2id0_A 550 YARFLKDK---AGTDTRFAAEIVDISRGGMRVRLVDN-GAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVID 625 (644)
T ss_dssp HHHHHGGG---TTSCCCEEEEEEEEETTEEEEEETTT-CCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEE
T ss_pred HHHHhhhc---cCCCceEEEEEEEEeCCceEEEEcCC-cEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEE
Confidence 57877663 688 999999999999999999754 6999999999973 3321 3356799999999
Q ss_pred EEEEEEeCC-Cceeeec
Q psy18072 70 VVVIRVDKE-KVMTTVT 85 (174)
Q Consensus 70 vrVi~Vd~~-~~l~ls~ 85 (174)
|+|++|+.. +.+.++.
T Consensus 626 VkV~~vd~~~~~I~~~l 642 (644)
T 2id0_A 626 VTIAEVRMETRSIIARP 642 (644)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCCEEEEEE
Confidence 999999985 4565553
No 37
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.61 E-value=2.4e-07 Score=79.61 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=66.7
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCCC---ceeeeccccc
Q psy18072 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEK---VMTTVTPEKA 89 (174)
Q Consensus 13 p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~~---~l~ls~~~k~ 89 (174)
.+.|++|+|+|.++.++|+||.|. +.+|+||.++++ ++..|++||.|+|.|++++... .+.+|...+
T Consensus 132 ~~~GeIV~G~V~ri~~~~v~VDlG---k~EgiLp~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p- 201 (344)
T 1hh2_P 132 ELKGTVTTAEVIRVMGEWADIRIG---KLETRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRVP- 201 (344)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEET---TEEEEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESSSH-
T ss_pred hcCCCEEEEEEEEEecCcEEEEeC---CeEEEEeHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEeecc-
Confidence 358999999999999999999994 599999999987 4578999999999999999653 355554444
Q ss_pred chHHHHHHHHHHHHHHHhhhCCeeEEe
Q psy18072 90 DGLKALQEAIDTIKAKIEQLGGVFQVQ 116 (174)
Q Consensus 90 ~g~~~i~~~~~~i~~~l~~~~g~l~~k 116 (174)
. .+....+ .+.=+...|.+.++
T Consensus 202 -~--~lk~Lfe--lEVPEI~dG~VeI~ 223 (344)
T 1hh2_P 202 -E--FVIGLMK--LEIPEVENGIVEIK 223 (344)
T ss_dssp -H--HHHHHHH--HHCHHHHHSSEEEE
T ss_pred -H--HHHHHHH--hhcccceeeeEEEE
Confidence 3 2333333 23334467777664
No 38
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.60 E-value=9.3e-08 Score=86.13 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=56.0
Q ss_pred CCCCCEEEEEEEEEecc--eEEEEECCCCCeEEEEEceecchhhh---------hccccccCCCCEEEEEEEEEeCC
Q psy18072 13 PEVEDVVMVTVISIAEM--GAYVHLLEYNNIEGMILLSELSRRRI---------RSINKLIRVGKTEPVVVIRVDKE 78 (174)
Q Consensus 13 p~~GdiV~G~V~~i~~~--GafV~L~~~~~~~GlI~iSels~~~v---------~~~~~~l~vGd~V~vrVi~Vd~~ 78 (174)
+.+|++|.|+|++|.++ ||||.|.. +..||||+|++++.++ .++.+.+++||.|.|+|++....
T Consensus 43 ~~vGnIY~GkV~rv~p~~~aAFVdiG~--gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g 117 (517)
T 2bx2_L 43 QKKANIYKGKITRIEPSLEAAFVDYGA--ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERG 117 (517)
T ss_dssp CCTTCEEEEEEEEEETTTTEEEEESSS--SSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCT
T ss_pred CCCCCEEEEEEEEeccCCceEEEEeCC--CcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccc
Confidence 35899999999999999 99999988 8899999999987763 34668899999999999996644
No 39
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=98.57 E-value=7.5e-08 Score=90.27 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=56.5
Q ss_pred ccchhhccCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecc--hhhh-----------hc----cccccCCCC
Q psy18072 4 SCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELS--RRRI-----------RS----INKLIRVGK 66 (174)
Q Consensus 4 ~~r~~~~~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels--~~~v-----------~~----~~~~l~vGd 66 (174)
.|+|+... + .++.|+|++|+++|+||.|.++ +++|+||+|+++ ..++ .+ ....|++||
T Consensus 662 ~~~~l~~~---~-~~~~g~V~~V~~~G~fV~l~~~-giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD 736 (760)
T 2vnu_D 662 VGQVMRNN---E-STETGYVIKVFNNGIVVLVPKF-GVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFD 736 (760)
T ss_dssp HHHHHHTC---C-SEEEEEEEEEETTEEEEEETTT-TEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTC
T ss_pred HHHHhhcC---c-eEEEEEEEEEECCeEEEEEeCC-CcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCC
Confidence 57766653 3 6999999999999999999876 599999999996 4442 12 257899999
Q ss_pred EEEEEEEEEeCC----Cceeeec
Q psy18072 67 TEPVVVIRVDKE----KVMTTVT 85 (174)
Q Consensus 67 ~V~vrVi~Vd~~----~~l~ls~ 85 (174)
.|+|+|++++.. +++.+++
T Consensus 737 ~V~VkV~~vd~~~~~~~kI~lsl 759 (760)
T 2vnu_D 737 KVEVQVRSVMDPITSKRKAELLL 759 (760)
T ss_dssp EEEEEEC--------CCEEEC--
T ss_pred EEEEEEEEEECccccCCcEEEEe
Confidence 999999999876 5666554
No 40
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=98.55 E-value=1.8e-07 Score=78.51 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=55.0
Q ss_pred CCCCEEEEEEEEEe-cceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCCCceeeecc
Q psy18072 14 EVEDVVMVTVISIA-EMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEKVMTTVTP 86 (174)
Q Consensus 14 ~~GdiV~G~V~~i~-~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~~~l~ls~~ 86 (174)
++|+++.|+|++++ ++||||.+.. .+.+||||+|+++|.+. ..+++||.+.|+ +.+|+.+.+.+|.+
T Consensus 68 ~~G~~~~g~V~~v~~~~GaFVdiG~-~~~d~lvp~sel~~~~~----~~~~~Gd~v~v~-l~iD~~~Ri~ls~k 135 (285)
T 3go5_A 68 TQDQFGWGRVTEVRKDLGVFVDTGL-PDKEIVVSLDILPELKE----LWPKKGDQLYIR-LEVDKKDRIWGLLA 135 (285)
T ss_dssp CSSSCEEEEEEEEETTTEEEEECSC-TTCCEEEEGGGSCSSGG----GSCCTTCEEEEE-EEECTTSCEEEEEC
T ss_pred cCCCEEEEEEEEEccCceEEEEECC-CCcEEEEEHHHCCcccc----cccCCCCEEEEE-EEECCCCcEEEEeh
Confidence 48999999999999 7999999952 03799999999997543 357999999766 68998777877764
No 41
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.53 E-value=1.4e-07 Score=79.47 Aligned_cols=72 Identities=13% Similarity=-0.014 Sum_probs=63.1
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCCCceeeec
Q psy18072 11 KYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEKVMTTVT 85 (174)
Q Consensus 11 ~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~~~l~ls~ 85 (174)
+.|++||+|.|+|+++....|.|.|.. .+.|+||.+.+. ...+.++..|++||.|.|||+++..+..+.|++
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s--~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~~~~~eLsc 194 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGG--SEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANKDMEPEMVC 194 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSS--SSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCTTSCCEEEC
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECC--CceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCCCCceEEEe
Confidence 468899999999999999999999987 789999999875 234567789999999999999999877778887
No 42
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1e-07 Score=91.52 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=62.0
Q ss_pred ccchhhccCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecc--hhhh-----------hc----cccccCCCC
Q psy18072 4 SCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELS--RRRI-----------RS----INKLIRVGK 66 (174)
Q Consensus 4 ~~r~~~~~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels--~~~v-----------~~----~~~~l~vGd 66 (174)
.|+|+... |.++.|+|++|+++|+||.|.++ +++|+||+|+++ .+++ ++ ....|++||
T Consensus 879 ~~~~l~~~----ge~~~g~V~~V~~~G~fV~L~~~-giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD 953 (977)
T 2wp8_J 879 VGQVMRNN----ESTETGYVIKVFNNGIVVLVPKF-GVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFD 953 (977)
T ss_dssp HHHHHHHT----TCEEEEEEEEECSSEEEEECTTT-CCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTC
T ss_pred Hhhhhccc----ceEEEEEEEEEcCCeEEEEEcCC-CeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCC
Confidence 57877663 78999999999999999999876 599999999997 5442 11 347899999
Q ss_pred EEEEEEEEEeCC----Cceeeec
Q psy18072 67 TEPVVVIRVDKE----KVMTTVT 85 (174)
Q Consensus 67 ~V~vrVi~Vd~~----~~l~ls~ 85 (174)
.|+|+|++++.. +++.+++
T Consensus 954 ~V~VkV~~vd~~~~~~~kI~Lsl 976 (977)
T 2wp8_J 954 KVEVQVRSVMDPITSKRKAELLL 976 (977)
T ss_dssp EEEEEECCCCCSSSCCCCCCEEE
T ss_pred EEEEEEEEEcCcccCCCceEEEe
Confidence 999999999862 4566654
No 43
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.51 E-value=6.9e-08 Score=69.19 Aligned_cols=42 Identities=29% Similarity=0.481 Sum_probs=37.9
Q ss_pred CCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhh
Q psy18072 12 YPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRI 55 (174)
Q Consensus 12 ~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v 55 (174)
.|++|+.|.+.|.++++||+||+|.+ +++||||+|++++.++
T Consensus 58 ~l~~Ge~V~g~V~~i~~fG~fv~l~~--~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 58 NPQQGDRVEGKIKSITDFGIFIGLDG--GIDGLVHLSDISWAQA 99 (101)
T ss_dssp CCCTTCEEEEEEEECCSEEEEECTTS--CEEEEEEEEEEEECCC
T ss_pred CCCCCCEEEEEEEEeCCcEEEEEcCC--CceEEEEHHHCccCcC
Confidence 34599999999999999999999987 8999999999997654
No 44
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=98.36 E-value=1.1e-06 Score=75.90 Aligned_cols=97 Identities=15% Similarity=0.119 Sum_probs=69.4
Q ss_pred hhccCCCCCCEEEEEEEE----EecceEEEEECC-CCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCCC---
Q psy18072 8 YAEKYPEVEDVVMVTVIS----IAEMGAYVHLLE-YNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEK--- 79 (174)
Q Consensus 8 ~~~~~p~~GdiV~G~V~~----i~~~GafV~L~~-~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~~--- 79 (174)
|.+...+.|++|+|+|.+ +.+.++||.|.. -.+.+|+||.+++. ++..|++||.|+|.|++|+...
T Consensus 123 ~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~~kgp 196 (366)
T 1k0r_A 123 YGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREP 196 (366)
T ss_dssp ----CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSC
T ss_pred HHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEecCCCcc
Confidence 444445689999999999 999999999953 01389999999986 3589999999999999999863
Q ss_pred ceeeecccccchHHHHHHHHHHHHHHHhhhCCeeEEe
Q psy18072 80 VMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQ 116 (174)
Q Consensus 80 ~l~ls~~~k~~g~~~i~~~~~~i~~~l~~~~g~l~~k 116 (174)
.+.+|...+ + .+...++ .++=+...|.+.++
T Consensus 197 qI~LSRT~p--~--lv~~Lfe--~EVPEI~dG~VeIk 227 (366)
T 1k0r_A 197 LITLSRTHP--N--LVRKLFS--LEVPEIADGSVEIV 227 (366)
T ss_dssp EEEEESSCH--H--HHHHHHH--HHCHHHHTTSEEEE
T ss_pred EEEEEeCCh--H--HHHHHHH--hcchhhcCCeEEEE
Confidence 355555444 3 3344433 33345577888775
No 45
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=98.09 E-value=1.9e-05 Score=65.07 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=68.0
Q ss_pred CCCCEEEEEEEE----EecceEEEEECC-CCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCCC---ceeeec
Q psy18072 14 EVEDVVMVTVIS----IAEMGAYVHLLE-YNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEK---VMTTVT 85 (174)
Q Consensus 14 ~~GdiV~G~V~~----i~~~GafV~L~~-~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~~---~l~ls~ 85 (174)
+.|++|+|+|.+ +....+||.|.. -.+.+|+||.+++. +++.|++||.|+|.|++|+... .+.+|.
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLSR 79 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLSR 79 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEEe
Confidence 489999999999 788899999952 01389999999976 4589999999999999999863 455665
Q ss_pred ccccchHHHHHHHHHHHHHHHhhhCCeeEEe
Q psy18072 86 PEKADGLKALQEAIDTIKAKIEQLGGVFQVQ 116 (174)
Q Consensus 86 ~~k~~g~~~i~~~~~~i~~~l~~~~g~l~~k 116 (174)
..+ . .+...++ .++=+...|.+.++
T Consensus 80 t~p--~--lvk~Lfe--~EVPEI~dG~veI~ 104 (251)
T 2asb_A 80 THP--N--LVRKLFS--LEVPEIADGSVEIV 104 (251)
T ss_dssp SCH--H--HHHHHHH--HHCHHHHTTSEEEE
T ss_pred ccH--H--HHHHHHH--hcchHhhcCeEEEE
Confidence 544 3 3344443 33445678888875
No 46
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=97.74 E-value=6.8e-05 Score=52.74 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=51.7
Q ss_pred CCCEEEEEEEEEecceEEEEECCCCCeEEEEEce-ecchhhhhccccccCCCCEEEEEEEEEeCC
Q psy18072 15 VEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLS-ELSRRRIRSINKLIRVGKTEPVVVIRVDKE 78 (174)
Q Consensus 15 ~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iS-els~~~v~~~~~~l~vGd~V~vrVi~Vd~~ 78 (174)
+|++.+|+|+ +.+.-++|.|.+|.+.+|+|--+ .+..++...+++.+ +|.+|+|+|+++|.-
T Consensus 32 ~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~l 94 (102)
T 1jjg_A 32 PGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADGL 94 (102)
T ss_dssp SSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECSS
T ss_pred CCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEeccE
Confidence 7999999998 68889999999997799998755 34445666677777 899999999999863
No 47
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.08 E-value=0.0012 Score=46.86 Aligned_cols=61 Identities=8% Similarity=0.007 Sum_probs=45.8
Q ss_pred CCCEEEEEEEEE---ecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCCC
Q psy18072 15 VEDVVMVTVISI---AEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEK 79 (174)
Q Consensus 15 ~GdiV~G~V~~i---~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~~ 79 (174)
.++.++|+|+.+ +.|| ||.... ++.+.|+|+|.+++..+ +...+++|+.|...|.++.+-+
T Consensus 13 ~~~~~~G~Vk~fn~~kGfG-FI~~~~-gg~dvfvH~s~l~~~~~--~~~~l~~Ge~V~g~V~~i~~fG 76 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFG-FITPDD-GSKDVFVHFSAGSSGAA--VRGNPQQGDRVEGKIKSITDFG 76 (101)
T ss_dssp ---CEEEEEEEEEGGGTEE-EEEESS-SSCEEEEECCCSCSSSC--CCCCCCTTCEEEEEEEECCSEE
T ss_pred ccccceeEEEEEECCCCCE-EEEeCC-CCcEEEEEEEEEecCCc--cccCCCCCCEEEEEEEEeCCcE
Confidence 678899999988 5688 887654 25899999999987543 1246889999999999987543
No 48
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=96.54 E-value=0.0011 Score=52.29 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=57.6
Q ss_pred eEEEEEceecchhhhhccccccCCC-------CEEEEEEEEEeC-CCceeeecccccchHHHHHHHHHHHHHHHhhhCCe
Q psy18072 41 IEGMILLSELSRRRIRSINKLIRVG-------KTEPVVVIRVDK-EKVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGV 112 (174)
Q Consensus 41 ~~GlI~iSels~~~v~~~~~~l~vG-------d~V~vrVi~Vd~-~~~l~ls~~~k~~g~~~i~~~~~~i~~~l~~~~g~ 112 (174)
+.|.|.++-++.+-+..+...|+-| +.+.++|.-|-+ --.+++++.++..|...|+.+++.|.+.|++.||.
T Consensus 91 Ira~ieltc~~~dGIe~IK~AL~~a~~~~~~~~~~~ikI~lvgaP~Y~i~~~~~Dkk~g~~~L~~aie~i~~~I~~~gG~ 170 (188)
T 1yz7_A 91 IDAEFEITVPKPNGVEIIKEALIRARDRANKEKDVEVKFTYLGAPRYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGE 170 (188)
T ss_dssp EEEEEEEECCSTTHHHHHHHHHHHHHHHHHTSTTCEEEEEECSTTEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEEEEEEEeCCCchHHHHHHHHHHHHhcccCCCCCcEEEEEEcCcEEEEEEeeCCHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 5666666655555555444444322 223333333333 23689999999999999999999999999999999
Q ss_pred eEEeeCceeEecc
Q psy18072 113 FQVQMAPKVVTAS 125 (174)
Q Consensus 113 l~~k~~P~~i~~~ 125 (174)
+.|+..++.|+..
T Consensus 171 ~~v~r~~~~~~~~ 183 (188)
T 1yz7_A 171 ATLLRKEKRIKKV 183 (188)
T ss_dssp EEEECCCCC----
T ss_pred EEEEEcHHHHHHH
Confidence 9999888877643
No 49
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=96.38 E-value=0.013 Score=41.44 Aligned_cols=60 Identities=17% Similarity=0.042 Sum_probs=50.3
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhh-----hc-cccccCCCCEEEEE
Q psy18072 10 EKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRI-----RS-INKLIRVGKTEPVV 71 (174)
Q Consensus 10 ~~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v-----~~-~~~~l~vGd~V~vr 71 (174)
..++..|+.+.+.|+++.+.++-|.+.+ +..+.|+.+.+.+.+- +. +.+.|++||.|.|+
T Consensus 28 ~~~~~~~~~~~AvV~~v~~~~~~v~~~~--g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 28 QDIGNSDDILAAVVLSATPGAVEAFRKN--GETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTSCTTTTCEEEEEEEEETTEEEEEETT--SCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred hccCccCCeEEEEEEEeCCCeEEEEEcC--CCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 4466679999999999999999999977 6778899999988752 33 66789999999998
No 50
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=95.99 E-value=0.0023 Score=44.99 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=53.4
Q ss_pred eEEEEEceecchhhhhccccccCCCC---------EEEEEEEEEeCCC-ceeeecccccchHHHHHHHHHHHHHHHhhhC
Q psy18072 41 IEGMILLSELSRRRIRSINKLIRVGK---------TEPVVVIRVDKEK-VMTTVTPEKADGLKALQEAIDTIKAKIEQLG 110 (174)
Q Consensus 41 ~~GlI~iSels~~~v~~~~~~l~vGd---------~V~vrVi~Vd~~~-~l~ls~~~k~~g~~~i~~~~~~i~~~l~~~~ 110 (174)
+.|.|.++-+..+-+..+.+.|+-|. .+.++|--|-+-. .+++++.++..|...|+++++.|.+.++++|
T Consensus 6 Ira~iel~c~~~dGIe~IK~AL~~a~~~~~~~~~~~~~vkI~~vgaP~Y~i~~~~~D~k~ge~~L~~ai~~i~~~i~~~g 85 (93)
T 2qn6_B 6 MSGLITVRTNEPLGVEKIKEVISKALENIEQDYESLLNIKIYTIGAPRYRVDVVGTNPKEASEALNQIISNLIKIGKEEN 85 (93)
T ss_dssp EEEEEEEEECCTTTHHHHHHHHHHHHTTHHHHCTTEEEEEEEESSTTEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEEEeCCCchHHHHHHHHHHHHhhcccccCccceEEEEEEcCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56666666666555554444443221 1345554443322 6789999999999999999999999999999
Q ss_pred CeeEEe
Q psy18072 111 GVFQVQ 116 (174)
Q Consensus 111 g~l~~k 116 (174)
|.+.|+
T Consensus 86 G~~~v~ 91 (93)
T 2qn6_B 86 VDISVV 91 (93)
T ss_dssp EEEEEC
T ss_pred CEEEEE
Confidence 999884
No 51
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=95.25 E-value=0.022 Score=50.54 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=42.2
Q ss_pred ccchhhccCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCCC
Q psy18072 4 SCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEK 79 (174)
Q Consensus 4 ~~r~~~~~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~~ 79 (174)
.|+|+.+ ++|..+.|.|+.+. . ..|+||++.+... ......+++||.|+|+|.+||..+
T Consensus 395 ~~~~l~~---~~g~~f~g~vv~l~---------~---~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~ 453 (469)
T 2r7d_A 395 TLRFIAA---QPERVWDAVVVDRR---------G---AQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQ 453 (469)
T ss_dssp HHHHHHT---CTTCCEEEEEEEEE---------T---TEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTT
T ss_pred HHHHHHh---CCCCEEEEEEEEEe---------C---cEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCC
Confidence 5776665 37999999876543 2 3577777766543 123467999999999999999865
No 52
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=94.02 E-value=0.11 Score=41.34 Aligned_cols=65 Identities=11% Similarity=0.038 Sum_probs=46.6
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhh--hcc----------ccccCCCCEEEEEEEEEeCCC
Q psy18072 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRI--RSI----------NKLIRVGKTEPVVVIRVDKEK 79 (174)
Q Consensus 13 p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v--~~~----------~~~l~vGd~V~vrVi~Vd~~~ 79 (174)
|.+|+++.|+|+.+.+.|+.+-+.+ -+..+|+...+...+. .+- .+--++|+.|+.||.+++..+
T Consensus 127 Pf~GevL~G~V~~~s~~~Ig~~~~G--~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~ 203 (214)
T 2rf4_A 127 PQVGDVLEGYIFIQSASHIGLLIHD--AFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTG 203 (214)
T ss_dssp CCTTCEEEEEECCCCSSCEEEEETT--TEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCS
T ss_pred cCCCCEEEEEEEEECCCcEEEEEeC--CEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecC
Confidence 4589999999999999777776544 5778999988753321 100 011236999999999998755
No 53
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=92.85 E-value=0.019 Score=47.35 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=54.7
Q ss_pred CeEEEEEceecchhhhhccccccCCCCE---------EEEEEEEEeC-CCceeeecccccchHHHHHHHHHHHHHHHhhh
Q psy18072 40 NIEGMILLSELSRRRIRSINKLIRVGKT---------EPVVVIRVDK-EKVMTTVTPEKADGLKALQEAIDTIKAKIEQL 109 (174)
Q Consensus 40 ~~~GlI~iSels~~~v~~~~~~l~vGd~---------V~vrVi~Vd~-~~~l~ls~~~k~~g~~~i~~~~~~i~~~l~~~ 109 (174)
++.|.|.++-++...+..+.+.|+.|.. +.++|.-|-+ .-.+++++.++..|...|+++++.|.+.|+++
T Consensus 178 ki~~~i~~~~~~~~Gi~~Ik~aL~~~~~~~~~~~~~~~~i~i~~v~~P~Y~i~~~~~d~k~~~~~l~~~~~~~~~~i~~~ 257 (266)
T 3cw2_C 178 KMSGLITVRTNEPLGVEKIKEVISKALENIEQDYESLLNIKIYTIGAPRYRVDVVGTNPKEASEALNQIISNLIKIGKEE 257 (266)
T ss_dssp EEEEEEEECCCCTTHHHHHHHHHHHHHTTCTTTSCSEEEEECBBSSSSEEEEEEEESCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEEEEEEecCCChHHHHHHHHHHhhhhcccccCccceEEEEEEcCCEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677777777766666555555543311 2233333332 22678899999999999999999999999999
Q ss_pred CCeeEEe
Q psy18072 110 GGVFQVQ 116 (174)
Q Consensus 110 ~g~l~~k 116 (174)
||.+.|+
T Consensus 258 ~g~~~~~ 264 (266)
T 3cw2_C 258 NVDISVV 264 (266)
T ss_dssp TCCEEEC
T ss_pred CCEEEEE
Confidence 9999874
No 54
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=89.22 E-value=0.87 Score=33.52 Aligned_cols=58 Identities=16% Similarity=0.024 Sum_probs=39.1
Q ss_pred CCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEE
Q psy18072 15 VEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVV 72 (174)
Q Consensus 15 ~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrV 72 (174)
.|..+.|+|..|.+.+++|...+.-...--+|.+++.--.-......|.+||.|.|-.
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~ 71 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYS 71 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEE
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEe
Confidence 5999999999999999999997611124567777664221112235789999998844
No 55
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=88.16 E-value=2.4 Score=29.00 Aligned_cols=55 Identities=9% Similarity=0.011 Sum_probs=41.8
Q ss_pred CCCEEEEEEEEEecceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEe
Q psy18072 15 VEDVVMVTVISIAEMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVD 76 (174)
Q Consensus 15 ~GdiV~G~V~~i~~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd 76 (174)
......|+|+.+. .|. ||.-.+ ++-+=|+|+|.|... .+.++.||.|...|..-.
T Consensus 15 ~~~~~~G~Vkwf~-KGfGFI~~dd-gg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~~~ 70 (89)
T 1wfq_A 15 AALRETGVIEKLL-TSYGFIQCSE-RQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSSDR 70 (89)
T ss_dssp CCCEEEEEEEEEC-SSEEEEEETT-TTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEECS
T ss_pred cccccceEEEEEe-CCeeEEecCC-CCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEECC
Confidence 4567899999984 555 666665 137999999998753 257899999999987643
No 56
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=87.59 E-value=2.7 Score=27.75 Aligned_cols=48 Identities=8% Similarity=0.058 Sum_probs=35.2
Q ss_pred EEEEEEEEe-cceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEE
Q psy18072 19 VMVTVISIA-EMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIR 74 (174)
Q Consensus 19 V~G~V~~i~-~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~ 74 (174)
..|+|+... ..|. ||.-.+- +-. |+|+|.|.... .++.||.|...+..
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~dg-~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENG-DNR-YFHVIKVANPD------LIKKDAAVTFEPTT 52 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSS-CEE-EEEGGGBSSGG------GCCTTCEEEEEEEE
T ss_pred cceEEEEEECCCCeEEEecCCC-Cce-EEEHhHcccCC------CCCCCCEEEEEEEe
Confidence 579999883 3455 6665541 356 99999997432 68999999998875
No 57
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=87.47 E-value=1.9 Score=27.64 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=37.7
Q ss_pred EEEEEEEEe-cceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEE
Q psy18072 19 VMVTVISIA-EMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRV 75 (174)
Q Consensus 19 V~G~V~~i~-~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~V 75 (174)
..|+|+... ..|. ||.-.+ +-+=|+|+|.+..... +.++.||.|...+..-
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~--g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEG--GSDVFVHFTAIQGEGF----KTLEEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETT--EEEEEEEGGGBCSSSC----CCCCTTCEEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCC--CccEEEEHHHccccCC----CCCCCCCEEEEEEEEC
Confidence 479999884 4455 676666 5788999999874322 4688999999988653
No 58
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=86.15 E-value=1.9 Score=28.15 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=37.4
Q ss_pred EEEEEEEEEe-cceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEE
Q psy18072 18 VVMVTVISIA-EMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRV 75 (174)
Q Consensus 18 iV~G~V~~i~-~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~V 75 (174)
...|+|+... ..|. ||.-.+ ++-+=|+|.|.+..... +.++.||.|...+..-
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~-g~~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 59 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPED-GSKDVFVHFSAIQTNGF----KTLAEGQRVEFEITNG 59 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETT-CCCCEEEEGGGBCCSSC----CCCCTTCEEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCC-CCccEEEEhHHcccccC----cCCCCCCEEEEEEEEC
Confidence 3689999884 3344 666555 13678999999874322 4688999999988753
No 59
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=85.25 E-value=1.5 Score=28.76 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=37.5
Q ss_pred EEEEEEEEe-cceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEE
Q psy18072 19 VMVTVISIA-EMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRV 75 (174)
Q Consensus 19 V~G~V~~i~-~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~V 75 (174)
..|+|+... ..|. ||.-.+ +-+=|+|+|.+....+ ..++.||.|...+..-
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~--g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 54 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREG--DTDVFVHYTAINAKGF----RTLNEGDIVTFDVEPG 54 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTT--SCCEEEEGGGBCSSSC----SSCCTTCEEEEEEECC
T ss_pred CCEEEEEEECCCCEEEEecCC--CCcEEEEhhhccccCC----CCCCCCCEEEEEEEEC
Confidence 479999884 4455 676665 5788999999874322 4688999999988653
No 60
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=84.94 E-value=0.32 Score=40.32 Aligned_cols=11 Identities=9% Similarity=0.142 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q psy18072 128 AELARQMERAE 138 (174)
Q Consensus 128 ~~~k~~~~~l~ 138 (174)
..+..++.++.
T Consensus 323 ~~l~~~l~~~~ 333 (386)
T 2ca6_A 323 DEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHhhhcC
Confidence 45555555543
No 61
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=84.57 E-value=1.5 Score=29.07 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=36.8
Q ss_pred EEEEEEEe-cceE-EEEECCCCCeEEEEEceecc-hhhhhccccccCCCCEEEEEEEE
Q psy18072 20 MVTVISIA-EMGA-YVHLLEYNNIEGMILLSELS-RRRIRSINKLIRVGKTEPVVVIR 74 (174)
Q Consensus 20 ~G~V~~i~-~~Ga-fV~L~~~~~~~GlI~iSels-~~~v~~~~~~l~vGd~V~vrVi~ 74 (174)
+|+|+... ..|. ||.-.+ +-+=|+|+|.+. ...+ ..++.||.|...+..
T Consensus 2 ~G~Vkwfn~~KGfGFI~~~d--G~DvFvH~s~i~~~~g~----~~l~~G~~V~F~~~~ 53 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGDD--GESYFLHFSELLDKKDE----GKLVKGSMVHFDPTP 53 (74)
T ss_dssp EEEEEEEETTTTEEEEEETT--SCEECCCGGGSSCSGGG----TTCCTTSEEEEEEEC
T ss_pred CEEEEEEECCCCEEEEecCC--CceEEEEhhhcccCCCC----CCCCCCCEEEEEEEE
Confidence 68999884 4455 676666 578899999987 4433 468899999998863
No 62
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=81.71 E-value=0.77 Score=29.57 Aligned_cols=49 Identities=12% Similarity=0.109 Sum_probs=35.8
Q ss_pred EEEEEEEe-cceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEE
Q psy18072 20 MVTVISIA-EMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIR 74 (174)
Q Consensus 20 ~G~V~~i~-~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~ 74 (174)
+|+|+... ..|. ||.-.+ +-+=++|+|.+....+ ..++.||.|...+..
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~--g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 52 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDE--GGDVFVHWSAIEMEGF----KTLKEGQVVEFEIQE 52 (66)
T ss_dssp CEEEEEEETTTTEEEEEETT--SCBCBBCSSSSCCSSC----CCCCSSSEEEEEEEC
T ss_pred cEEEEEEECCCCEEEEecCC--CceEEEEhHHccccCC----CCCCCCCEEEEEEEE
Confidence 58888884 3455 666665 5788999999874322 468899999988764
No 63
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=81.34 E-value=4.9 Score=26.63 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=39.5
Q ss_pred CCEEEEEEEEEe-cceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEE
Q psy18072 16 EDVVMVTVISIA-EMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIR 74 (174)
Q Consensus 16 GdiV~G~V~~i~-~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~ 74 (174)
...+.|+|+... ..|. ||.-.+ ++-+=|+|+|.|.....+.-.+.++.||.|...+..
T Consensus 6 ~~~~~G~Vkwfn~~kGfGFI~~~~-gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 6 ATKVLGTVKWFNVRNGYGFINRND-TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEGG-GTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE
T ss_pred ccccceEEEEEECCCCcEEEecCC-CCccEEEEhHHccccccccccccCCCCCEEEEEEEE
Confidence 456889999984 3444 555543 147899999999753111112568899999998875
No 64
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=81.01 E-value=1.6 Score=30.30 Aligned_cols=51 Identities=10% Similarity=0.056 Sum_probs=39.2
Q ss_pred CCEEEEEEEEEecceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEE
Q psy18072 16 EDVVMVTVISIAEMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVI 73 (174)
Q Consensus 16 GdiV~G~V~~i~~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi 73 (174)
.....|+|..+ ..|. ||.-.+ ++-+=|+|+|.+... .+.++.||.|...|.
T Consensus 16 ~~~~~G~Vkwf-~KGfGFI~~dd-g~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAM-KEAFGFIERGD-VVKEIFFHYSEFKGD-----LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCC-CSSEEEEECSS-SCCCEEEETTTCCSC-----TTSCCSCCEEEEEEC
T ss_pred CcceeEEEEEE-eCCceEEecCC-CCceEEEEehHhccc-----cCCCCCCCEEEEEEE
Confidence 56789999988 5566 666654 136889999999754 257899999999885
No 65
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=80.49 E-value=3.5 Score=30.70 Aligned_cols=52 Identities=10% Similarity=0.135 Sum_probs=37.4
Q ss_pred EEEEEEEEEe-cceE-EEEEC--------CCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEE
Q psy18072 18 VVMVTVISIA-EMGA-YVHLL--------EYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRV 75 (174)
Q Consensus 18 iV~G~V~~i~-~~Ga-fV~L~--------~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~V 75 (174)
.++|+|+-+. ..|. ||.-. . +-+-|+|+|.|....+ +.|+.|+.|...|..-
T Consensus 9 ~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~--g~DvFvH~s~i~~~g~----~~l~eG~~V~f~~~~g 70 (148)
T 3ts2_A 9 HGAGICKWFNVRMGFGFLSMTARAGVALDP--PVDVFVHQSKLHMEGF----RSLKEGEAVEFTFKKS 70 (148)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEETTEEEEE--EEEEEEEGGGBCSSSS----CCCCTTCEEEEEEEEE
T ss_pred cceeEEEEEECCCCeeEEeeCccccccCCC--CccEEEEhHHhcccCC----ccCCCCCEEEEEEEEc
Confidence 4789999984 3344 55543 3 4688999999874433 4688999999988764
No 66
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=80.25 E-value=5.8 Score=25.43 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=36.9
Q ss_pred EEEEEEEEe-cceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEE
Q psy18072 19 VMVTVISIA-EMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRV 75 (174)
Q Consensus 19 V~G~V~~i~-~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~V 75 (174)
..|+|+... ..|. ||.-.+ ++-+=|+|+|.+...-. +.++.||.|...+..-
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~-gg~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 55 (67)
T 3cam_A 2 ATGIVKWFNDAKGFGFITPDE-GGEDLFAHFSAINMEGF----KTLKEGQRVSFDVTTG 55 (67)
T ss_dssp EEEEEEEEETTTTEEEEEETT-SCCCEEEEGGGBCGGGG----SSCCTTCEEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEecCC-CCccEEEEHHHccccCC----CCCCCCCEEEEEEEEC
Confidence 368999883 3454 565544 14788999999975432 4688999999988753
No 67
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=78.28 E-value=2.7 Score=28.64 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=40.1
Q ss_pred CCCEEEEEEEEEecceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEE
Q psy18072 15 VEDVVMVTVISIAEMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIR 74 (174)
Q Consensus 15 ~GdiV~G~V~~i~~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~ 74 (174)
.+....|+|.... .|. ||.-.+ ++-+=|+|+|.+... .+.++.||.|...+..
T Consensus 15 ~~~~~~G~Vk~f~-kGfGFI~~dd-gg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~~ 68 (88)
T 2yty_A 15 NSKRLLGYVATLK-DNFGFIETAN-HDKEIFFHYSEFSGD-----VDSLELGDMVEYSLSK 68 (88)
T ss_dssp SCCCEEEEEEEEC-SSEEEEECSS-SSCEEEEETTTCCSC-----TTTCCTTCEEEECCCC
T ss_pred CCCceeEEEEEEE-CCccEEecCC-CCceEEEEEhhhccc-----cCcCCCCCEEEEEEEE
Confidence 4677999999985 455 666554 147899999999754 2578999999988764
No 68
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=78.00 E-value=3 Score=25.74 Aligned_cols=51 Identities=12% Similarity=0.064 Sum_probs=29.8
Q ss_pred CEEEEEEEEEecceEEE--EECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEE
Q psy18072 17 DVVMVTVISIAEMGAYV--HLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVI 73 (174)
Q Consensus 17 diV~G~V~~i~~~GafV--~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi 73 (174)
..+.|+|.++...|..+ .+.- ++ + .-.+.++...... -.+++|+.|.+.+.
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~-~~--~-~l~a~it~~s~~~--l~L~~G~~V~~~ik 59 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDY-KG--T-ELVAAITIDSVAD--LDLVPGDKVTALVK 59 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEE-TT--E-EEEEEEEHHHHHH--HTCCTTCEEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEe-CC--C-EEEEEeCHHHHHh--CCCCCCCEEEEEEe
Confidence 46899999998777443 3321 11 1 1222333332332 24899999999874
No 69
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=77.82 E-value=3.7 Score=30.76 Aligned_cols=53 Identities=8% Similarity=0.063 Sum_probs=39.2
Q ss_pred CCCEEEEEEEEEe-cceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEE
Q psy18072 15 VEDVVMVTVISIA-EMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIR 74 (174)
Q Consensus 15 ~GdiV~G~V~~i~-~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~ 74 (174)
.|..+.|+|+-+. ..|. ||.-.+ ++-+=|+|+|.|... ..+..||.|...|..
T Consensus 59 ~g~m~~GtVKwFn~~KGfGFI~~dd-Gg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~ 113 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGHGFITPAD-GGPDIFLHISDVEGE------YVPVEGDEVTYKMCS 113 (147)
T ss_dssp HSCCEEEEEEEEETTTTEEEEEESS-SCSCEEEEGGGEESS------BCCCTTCEEEEEEEE
T ss_pred cCCccceEEEEEeCCCCeEEeccCC-CCccEEEEeeeecCC------CcCCCCCEEEEEEEe
Confidence 3667899999984 3455 666554 137889999998632 379999999988875
No 70
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=75.20 E-value=7.4 Score=26.64 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=36.6
Q ss_pred EEEEEEEEEe-cceE-EEEECC------CCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEE
Q psy18072 18 VVMVTVISIA-EMGA-YVHLLE------YNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRV 75 (174)
Q Consensus 18 iV~G~V~~i~-~~Ga-fV~L~~------~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~V 75 (174)
..+|+|+-+. ..|. ||.... -++-+=|+|.|.|...-+ +.|..||.|...|..-
T Consensus 8 r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~----~~L~eG~~V~f~v~~g 69 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGF----RSLKEGEPVEFTFKKS 69 (90)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSS----CCCCTTCEEEEEEEEE
T ss_pred ccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCC----CccCCCCEEEEEEEEC
Confidence 4679998874 3455 554321 013577999999875433 4688999999988753
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=75.16 E-value=1.3 Score=36.47 Aligned_cols=15 Identities=0% Similarity=0.173 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhccc
Q psy18072 129 ELARQMERAEAENAE 143 (174)
Q Consensus 129 ~~k~~~~~l~k~~~e 143 (174)
.+..++..+++...-
T Consensus 320 ~~~~~l~~~l~~~~~ 334 (386)
T 2ca6_A 320 DVVDEIREVFSTRGR 334 (386)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHhhhcCc
Confidence 344555666665543
No 72
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=73.23 E-value=15 Score=23.22 Aligned_cols=49 Identities=27% Similarity=0.255 Sum_probs=32.9
Q ss_pred CCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCC
Q psy18072 14 EVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKE 78 (174)
Q Consensus 14 ~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~ 78 (174)
+.|+.+..+|.++...|-=|.-.+ +..=|++ .. -+|+.|.|+|.++...
T Consensus 12 ~~~~~~~~~I~~l~~~G~Gva~~~--g~~vfV~-------------~a-lPGE~V~v~i~k~kk~ 60 (68)
T 1yez_A 12 EEGEVYDVTIQDIARQGDGIARIE--GFVIFVP-------------GT-KVGDEVRIKVERVLPK 60 (68)
T ss_dssp CTTEEEEEECCEEETTTEEEEEET--TEEEEEE-------------SC-CTTCEEEEEEEEECSS
T ss_pred CCCCEEEEEEEEcCCCccEEEEEC--CEEEECc-------------CC-CCCCEEEEEEEEecCC
Confidence 478999988888876665443322 3444444 22 3899999999987653
No 73
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=72.98 E-value=3.4 Score=25.77 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=29.9
Q ss_pred CEEEEEEEEEecceEEEEECCCCCeE-EEEEceecchhhhhccccccCCCCEEEEEEE
Q psy18072 17 DVVMVTVISIAEMGAYVHLLEYNNIE-GMILLSELSRRRIRSINKLIRVGKTEPVVVI 73 (174)
Q Consensus 17 diV~G~V~~i~~~GafV~L~~~~~~~-GlI~iSels~~~v~~~~~~l~vGd~V~vrVi 73 (174)
..+.|+|.++...|..+.+.= ... |..-.+.++...... -.+++|+.|.+.+.
T Consensus 7 N~l~g~V~~i~~~g~~~~V~l--~~~~g~~l~a~it~~s~~~--l~L~~G~~V~a~ik 60 (68)
T 1gut_A 7 NQLKGKVVGLKKGVVTAEVVL--EIAGGNKITSIISLDSVEE--LGVKEGAELTAVVK 60 (68)
T ss_dssp CEEEEEEEEEEECSSEEEEEE--EETTSCEEEEEEEHHHHHH--HTCCTTCEEEEECC
T ss_pred eEEEEEEEEEEeCCceEEEEE--EeCCCCEEEEEeCHHHHHH--CCCCCCCEEEEEEe
Confidence 478999999987774433311 010 111113344333332 24899999999764
No 74
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=68.63 E-value=15 Score=23.48 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=31.3
Q ss_pred CCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCC
Q psy18072 14 EVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKE 78 (174)
Q Consensus 14 ~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~ 78 (174)
+.|+.+..+|.++...|-=|.-.+ +..=|++ ..+ +|+.|.|+|.++...
T Consensus 14 ~~~~~~~v~I~~l~~~G~Gva~~~--g~~vfV~-------------~al-PGE~V~v~i~k~kk~ 62 (70)
T 1yvc_A 14 EAGKEYEVTIEDMGKGGDGIARID--GFVVFVP-------------NAE-KGSVINVKVTAVKEK 62 (70)
T ss_dssp CTTCEEEEECCEECTTSCEEEEET--TEEEEET-------------TCC-TTCEEEEEEEEECSS
T ss_pred cCCCEEEEEEEEcCCCccEEEEEC--CEEEEcc-------------CCC-CCCEEEEEEEEeeCC
Confidence 479999888888765554333222 2333333 233 899999999987653
No 75
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=62.15 E-value=16 Score=24.13 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=43.2
Q ss_pred hhhhccccccCCCCEE-EEEEEEEeCCCceeee-cccccchHHHHHHHHHHHHHHHhhhCC
Q psy18072 53 RRIRSINKLIRVGKTE-PVVVIRVDKEKVMTTV-TPEKADGLKALQEAIDTIKAKIEQLGG 111 (174)
Q Consensus 53 ~~v~~~~~~l~vGd~V-~vrVi~Vd~~~~l~ls-~~~k~~g~~~i~~~~~~i~~~l~~~~g 111 (174)
..+..+...+++.+.| +-.+++.+..+.+.+. ...+.+.-.++.+..+++...|..+||
T Consensus 17 ~~i~Eler~~rine~VlR~l~vr~d~~r~YE~m~Il~P~l~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 17 DRVNDLARELRIRDNVRRVMVVASTTPGRYEVNIVLNPNLDQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEECSSTTEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHhCCCHHHHHHHHHhccCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 3445555677777555 8888888877766433 335566777999999999999998886
No 76
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=61.64 E-value=1 Score=42.17 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=22.1
Q ss_pred CCCEE--EEEEEE--EecceEEEEECCCCCeEEEEEceecchhh-------hhccc--cccCCCCEEEEEEEEEeCCC
Q psy18072 15 VEDVV--MVTVIS--IAEMGAYVHLLEYNNIEGMILLSELSRRR-------IRSIN--KLIRVGKTEPVVVIRVDKEK 79 (174)
Q Consensus 15 ~GdiV--~G~V~~--i~~~GafV~L~~~~~~~GlI~iSels~~~-------v~~~~--~~l~vGd~V~vrVi~Vd~~~ 79 (174)
.|+++ .|++.+ +.++|+||.|.. +|.+|+|..++.. +..+. ..+++|+.+.++|.++..-+
T Consensus 609 i~~vIG~gGk~Ik~I~~~~G~~IdI~~----dG~v~Is~~~~~~~~~a~~~i~~i~~p~~~~vG~i~~G~V~~i~~fG 682 (757)
T 1e3p_A 609 IGEVIGPKRQMINQIQEDTGAEITIED----DGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFG 682 (757)
T ss_dssp ------------CTTCCCCCSCC------------CCCBSSHHHHCC---------------------CBEEECC-CS
T ss_pred eehcccccceeeehhhHhhCCEEEecC----CceEEEecCCHHHHHHHHHHHHHhcchhhcccccEEEEEEEEccccE
Confidence 45544 355655 478999999964 7999999887643 33344 56789999999999997665
No 77
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=58.83 E-value=37 Score=22.56 Aligned_cols=54 Identities=13% Similarity=-0.080 Sum_probs=35.5
Q ss_pred CCEEEEEEEEEecceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEE
Q psy18072 16 EDVVMVTVISIAEMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRV 75 (174)
Q Consensus 16 GdiV~G~V~~i~~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~V 75 (174)
--.+.|+|+...+.|. +|.+.+ +..=+.|++=-.+. -.-.+.+||.|.+.+...
T Consensus 13 ~ie~~G~Vik~l~n~~f~V~l~n--G~~~~c~i~GK~Rk----~~I~Il~GD~V~ve~~~y 67 (79)
T 3i4o_A 13 AIEVEGRVVEPLPNAMFRIELEN--GHKVLAHISGKMRQ----HYIRILPEDRVVVELSPY 67 (79)
T ss_dssp CSEEEEEEEEEETTTEEEEEETT--SCEEEEEECHHHHH----TTCCCCTTCEEEEEEETT
T ss_pred eEEEEEEEEEEcCCCEEEEEeCC--CCEEEEEeCcceec----CCccCCCCCEEEEEECcc
Confidence 3458999999985555 688877 65556666532211 112478999999876543
No 78
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=54.47 E-value=39 Score=24.06 Aligned_cols=65 Identities=17% Similarity=0.066 Sum_probs=37.9
Q ss_pred ccchhhccCCCCCCEEEEEEEEE-ecceEEEEECCC---CCeEEEEEceecchhhhhcc-ccccCCCCEEEEE
Q psy18072 4 SCRFYAEKYPEVEDVVMVTVISI-AEMGAYVHLLEY---NNIEGMILLSELSRRRIRSI-NKLIRVGKTEPVV 71 (174)
Q Consensus 4 ~~r~~~~~~p~~GdiV~G~V~~i-~~~GafV~L~~~---~~~~GlI~iSels~~~v~~~-~~~l~vGd~V~vr 71 (174)
+|+|.-.-.. -|.+..|+|++- .+.-+.|.+... ..|.-++..+.=. .+.+. ....++||.|.+.
T Consensus 20 ~cPf~G~~~v-rgr~l~G~VvS~KM~KTivV~ve~~~~hpkY~K~~kr~kk~--~aHDe~~n~~~vGD~V~I~ 89 (113)
T 3j20_R 20 KCPWHGNLKI-HGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKI--HAHNPPCINAKVGDKVLIA 89 (113)
T ss_dssp SSTTSSSCCC-CSCEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEE--EEECCTTSCCCTTSEEEEE
T ss_pred CCCCcceeeE-eeEEEEEEEEeccCCceEEEEEEEEEEcCcccEEEECceEE--EEECCCCCCCCCCCEEEEE
Confidence 7998887665 899999999987 355677766430 0111222211100 01122 2468999998653
No 79
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=53.90 E-value=63 Score=23.92 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=39.7
Q ss_pred CCCCCCEEEEEEEEEecceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEE
Q psy18072 12 YPEVEDVVMVTVISIAEMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIR 74 (174)
Q Consensus 12 ~p~~GdiV~G~V~~i~~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~ 74 (174)
+| ....+.|+|+.....+. -|.+.+ +..=|.|++-=.+.+ -.+++||.|.|....
T Consensus 27 ~p-~ege~~g~V~e~lgn~~f~V~l~n--G~~~La~I~GKmRk~-----IwI~~GD~VlVe~~~ 82 (143)
T 1d7q_A 27 FK-EDGQEYAQVIKMLGNGRLEAMCFD--GVKRLCHIRGKLRKK-----VWINTSDIILVGLRD 82 (143)
T ss_dssp CC-CTTEEEEEEEEECSSSEEEEEETT--TEEEEEECCSGGGGS-----CCCCTTCEEEEECSS
T ss_pred CC-CCCEEEEEEEEEcCCCEEEEEeCC--CCEEEEEecccceee-----EEecCCCEEEEeecc
Confidence 55 34578999999977665 467777 888888888533222 468899999987653
No 80
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=53.73 E-value=56 Score=23.10 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=34.1
Q ss_pred CCCCCCEEEEEEEEEecceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEE
Q psy18072 12 YPEVEDVVMVTVISIAEMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVI 73 (174)
Q Consensus 12 ~p~~GdiV~G~V~~i~~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi 73 (174)
+|..|+ +.|+|+.....+. .|.+.+ +..=++|++--. +. .-.+.+||.|.+.+.
T Consensus 28 ~~~~~e-~~G~Vi~~lgn~~y~V~~~d--G~~~l~~i~GK~----Rk-~I~i~~GD~V~ve~~ 82 (117)
T 2oqk_A 28 FKEEGQ-EYGQVQRMLGNGRLDAYCFD--GQKRLCHIRGKM----RK-KVWVNPGDIVLVSLR 82 (117)
T ss_dssp CCCTTE-EEEEEEEEEETTEEEEEETT--SCEEEEECCHHH----HH-HSCCCTTCEEEEEEC
T ss_pred CCCCCE-EEEEEEEEcCCCEEEEEeCC--CCEEEEEEcCce----ec-CCcCCCCCEEEEEEE
Confidence 454554 5799999877444 566776 555555655322 22 234669999998765
No 81
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=53.04 E-value=6.6 Score=26.10 Aligned_cols=51 Identities=12% Similarity=0.064 Sum_probs=35.2
Q ss_pred EEEEEEEEEecceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEE
Q psy18072 18 VVMVTVISIAEMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRV 75 (174)
Q Consensus 18 iV~G~V~~i~~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~V 75 (174)
...|+|..+. .|. ||.-.+-.+-+=|+|+|.+. .. ..++.||.|...|..-
T Consensus 8 ~~~G~V~~~~-KGfGFI~~ddg~g~DvFvH~s~i~-~g-----~~l~~G~~V~F~v~~~ 59 (79)
T 2ytv_A 8 LRRATVECVK-DQFGFINYEVGDSKKLFFHVKEVQ-DG-----IELQAGDEVEFSVILN 59 (79)
T ss_dssp BCCEEEEECC-SSEEEESCCCSSSSSEEEETTTCC-SS-----CCCCTTCEEECBCEEC
T ss_pred cccEEEEEec-ccceeEeCCCCCCCcEEEEhHHcC-CC-----CcCCCCCEEEEEEEEC
Confidence 4578888873 344 66555410267899999987 21 4789999999988653
No 82
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=58.04 E-value=2.9 Score=27.12 Aligned_cols=52 Identities=6% Similarity=0.008 Sum_probs=34.8
Q ss_pred EEEEEEEEEe-cceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEE
Q psy18072 18 VVMVTVISIA-EMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIR 74 (174)
Q Consensus 18 iV~G~V~~i~-~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~ 74 (174)
.+.|+|+... ..|. ||.-.+ ++-+=|+|.|.+..... ..++.||.|...+..
T Consensus 4 ~~~G~Vk~fn~~kGfGFI~~~~-gg~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 57 (70)
T 2lss_A 4 NIVGKVKWYNSTKNFGFIEQDN-GGKDVFVHKSAVDAAGL----HSLEEGQDVIFDLEE 57 (70)
Confidence 4678888773 3343 454433 14688999999975432 458899999887754
No 83
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=49.22 E-value=6.1 Score=26.94 Aligned_cols=51 Identities=10% Similarity=0.217 Sum_probs=37.0
Q ss_pred CEEEEEEEEEecceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEE
Q psy18072 17 DVVMVTVISIAEMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRV 75 (174)
Q Consensus 17 diV~G~V~~i~~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~V 75 (174)
...+|+|..+. .|. ||.-.+ ++-+=|+|+|.+... +.++.||.|.-.|..-
T Consensus 7 ~r~~G~Vk~f~-KGfGFI~~~~-gg~DvFvH~s~i~~~------~~L~~G~~V~F~v~~g 58 (89)
T 1x65_A 7 GREMGVIAAMR-DGFGFIKCVD-RDVRMFFHFSEILDG------NQLHIADEVEFTVVPD 58 (89)
T ss_dssp CCEEEEEEECC-TTBCEEEESS-SSSCCCCBTTGGGGS------CCCCTTCCEEECCBCC
T ss_pred cceeEEEEEEe-CCcceeecCC-CCccEEEEhhhccCC------CCCCCCCEEEEEEEeC
Confidence 35789999884 454 666544 136789999998741 5799999999888653
No 84
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=48.12 E-value=33 Score=30.48 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=34.9
Q ss_pred EEEEEEEEEecce---EEEEECCC-CCeEEEEEceec-chhhhhccccccCCCCEEEEE
Q psy18072 18 VVMVTVISIAEMG---AYVHLLEY-NNIEGMILLSEL-SRRRIRSINKLIRVGKTEPVV 71 (174)
Q Consensus 18 iV~G~V~~i~~~G---afV~L~~~-~~~~GlI~iSel-s~~~v~~~~~~l~vGd~V~vr 71 (174)
.|.|.|.++...| +|+.|... +.++.++....+ +...+....+.+..|+.|.|+
T Consensus 59 ~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~ 117 (521)
T 3bju_A 59 KVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQ 117 (521)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEE
T ss_pred EEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEE
Confidence 5899999998887 89999762 235666655444 222222222458889988664
No 85
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=47.57 E-value=25 Score=26.63 Aligned_cols=65 Identities=8% Similarity=0.039 Sum_probs=27.2
Q ss_pred cccchhhccCCCCCCEEEEEEEEE-ecceEEEEECCC---CCeEEEEEceecchhhhhccc--cccCCCCEEEE
Q psy18072 3 LSCRFYAEKYPEVEDVVMVTVISI-AEMGAYVHLLEY---NNIEGMILLSELSRRRIRSIN--KLIRVGKTEPV 70 (174)
Q Consensus 3 ~~~r~~~~~~p~~GdiV~G~V~~i-~~~GafV~L~~~---~~~~GlI~iSels~~~v~~~~--~~l~vGd~V~v 70 (174)
.+|+|+-.-.. -|.+..|+|++- .+.-+.|.+... ..|.=++..+.=. .+.+.. ...++||.|.+
T Consensus 58 ~kCPf~G~lsv-RGr~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy--~AHDe~~n~~~kvGD~V~I 128 (158)
T 2zkq_q 58 KKCPFTGNVSI-RGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNM--SVHLSPCFRDVQIGDIVTV 128 (158)
T ss_dssp --------------CEEEEEEEECSSSCEEEEEEEEECSSTTCCCEEEEEEEE--CCBCCSSCCCC-CCCEEEE
T ss_pred CCCCCccccce-eeEEEEEEEEEccCCccEEEEEEEEEecCccceeeecceeE--EEECCcccCcCCCCCEEEE
Confidence 47999887665 799999999987 455677766431 1122222222100 011222 25999999765
No 86
>2jk8_A BEPA, putative cell filamentation protein (BEPA protein; T4SS, OB fold, FIC domain, substrate protein, protein transl cell adhesion; 2.80A {Bartonella henselae} PDB: 2vy3_A 2vza_A*
Probab=47.32 E-value=58 Score=26.55 Aligned_cols=54 Identities=9% Similarity=0.046 Sum_probs=42.0
Q ss_pred CCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEE
Q psy18072 12 YPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVV 72 (174)
Q Consensus 12 ~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrV 72 (174)
.|+.|..+.|...+-...++.+.+.+ .-=+++...++..++ +.+++||.+..++
T Consensus 247 ~~~~g~~~~g~~~~~~~~~~~~~~~~---~~~~~~k~~~~pe~~----~~l~~~~~~~~~~ 300 (302)
T 2jk8_A 247 VAKEGETYTGTYRGAGLEGFALNVKG---AYIIGNIDHLPPEQL----KILKPGDKITFTA 300 (302)
T ss_dssp ECCTTCEEEEEEEEECSSEEEEEBTT---BEEEEEGGGSCHHHH----HTCCTTCEEEEEC
T ss_pred eccCCCccceEEEecCCCeEEEEeCC---cEEEEECCccCHHHH----hccCCCCEEEEEe
Confidence 45689999999999888888888865 455667677766555 5689999998865
No 87
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=45.77 E-value=66 Score=24.21 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=26.0
Q ss_pred cccchhhccCCCCCCEEEEEEEEE-ecceEEEEEC
Q psy18072 3 LSCRFYAEKYPEVEDVVMVTVISI-AEMGAYVHLL 36 (174)
Q Consensus 3 ~~~r~~~~~~p~~GdiV~G~V~~i-~~~GafV~L~ 36 (174)
.+|+|+-.-.. -|.+..|+|++- .+.-+.|.+.
T Consensus 55 ~kCPf~G~lsv-Rgr~l~G~VVS~KMdKTIvV~ve 88 (157)
T 2xzm_Q 55 KKCPFTSNLSI-RGKIIKGLVISTKMNRTVIIRRD 88 (157)
T ss_dssp TTCSSSSSCCC-CSCEEEEEEEECCSTTEEEEEEE
T ss_pred CCCCCccceee-eeEEEEEEEEEecCCccEEEEEE
Confidence 57999988665 799999999987 4566777764
No 88
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=45.10 E-value=8.1 Score=25.33 Aligned_cols=25 Identities=24% Similarity=0.574 Sum_probs=17.7
Q ss_pred ccccccCCCCEEEE----------EEEEEeCCCce
Q psy18072 57 SINKLIRVGKTEPV----------VVIRVDKEKVM 81 (174)
Q Consensus 57 ~~~~~l~vGd~V~v----------rVi~Vd~~~~l 81 (174)
.++++|++||.|+| .|++|+.+...
T Consensus 13 ~LrK~F~~GDHVkVi~G~~~getGlVV~v~~d~v~ 47 (69)
T 2do3_A 13 ELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVI 47 (69)
T ss_dssp CCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEE
T ss_pred HceeeccCCCeEEEeccEEcCceEEEEEEeCCEEE
Confidence 34489999999986 46777665433
No 89
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=42.85 E-value=35 Score=30.48 Aligned_cols=53 Identities=9% Similarity=0.136 Sum_probs=33.6
Q ss_pred EEEEEEEEEecce--EEEEECCC-CCeEEEEEceecchhhhhccccccCCCCEEEEE
Q psy18072 18 VVMVTVISIAEMG--AYVHLLEY-NNIEGMILLSELSRRRIRSINKLIRVGKTEPVV 71 (174)
Q Consensus 18 iV~G~V~~i~~~G--afV~L~~~-~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vr 71 (174)
.|.|.|..+...| +|+.|... +.++.++....++...+.. -+.++.|+.|.|+
T Consensus 90 ~v~GwV~~~R~~Gk~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~-~~~l~~gd~V~V~ 145 (529)
T 4ex5_A 90 AIAGRMMLKRVMGKASFATVQDGSGQIQFFVTPADVGAETYDA-FKKWDLGDIVAAR 145 (529)
T ss_dssp EEEEEEEEEEEETTEEEEEEECSSCEEEEEECHHHHCHHHHHH-HHTCCTTCEEEEE
T ss_pred EEEEEEEeeecCCCeEEEEEEeCCeeEEEEEECCcCCHHHHHH-HhcCCCCCEEEEE
Confidence 4789999998776 89999762 2355666544443222221 2358889888664
No 90
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=42.10 E-value=5.4 Score=37.16 Aligned_cols=72 Identities=18% Similarity=0.310 Sum_probs=0.0
Q ss_pred EEEEE-ecceEEEEECCCCCeEEEEEceecchh-------hhhccccccCCCCEEEEEEEEEeCCCceeeecccccchHH
Q psy18072 22 TVISI-AEMGAYVHLLEYNNIEGMILLSELSRR-------RIRSINKLIRVGKTEPVVVIRVDKEKVMTTVTPEKADGLK 93 (174)
Q Consensus 22 ~V~~i-~~~GafV~L~~~~~~~GlI~iSels~~-------~v~~~~~~l~vGd~V~vrVi~Vd~~~~l~ls~~~k~~g~~ 93 (174)
+|..| .++|+||.+.. .|.++++...+. ++..+...+++|+.+.++|.++..-+.+ ..+.....|+.
T Consensus 581 ~I~~I~~~~G~~IdI~~----dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaF-Vel~~g~eGLv 655 (723)
T 3cdi_A 581 VIRALTEETGTTIEIED----DGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAF-VAIGGGKEGLV 655 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeeehhhCceEEecC----CccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEE-EEeCCCceEEE
Confidence 56666 67899999864 688888765543 3445567789999999999998765532 22222234555
Q ss_pred HHHHH
Q psy18072 94 ALQEA 98 (174)
Q Consensus 94 ~i~~~ 98 (174)
.+.+.
T Consensus 656 HiSel 660 (723)
T 3cdi_A 656 HISQI 660 (723)
T ss_dssp -----
T ss_pred EHHHc
Confidence 55544
No 91
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.49 E-value=60 Score=22.89 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=39.0
Q ss_pred CCCCCCEEEEEEEEEecceEE-EEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEe
Q psy18072 12 YPEVEDVVMVTVISIAEMGAY-VHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVD 76 (174)
Q Consensus 12 ~p~~GdiV~G~V~~i~~~Gaf-V~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd 76 (174)
+|.. ..+.|+|+.....+.| |.+.+ +..=|.|++-=.+. .-.+++||.|.|.....+
T Consensus 11 ~p~e-ge~~g~V~~~lgn~~f~V~l~n--G~~~la~i~GK~Rk-----~IwI~~GD~VlVe~~~yd 68 (111)
T 2dgy_A 11 VPSN-QQQIVRVLRTPGNNLHEVETAQ--GQRFLVSMPSKYRK-----NIWIKRGDFLIVDPIEEG 68 (111)
T ss_dssp CCCS-SCEEEEEEECCSSSEEEEECTT--SCEEEEECCTTCCS-----CCCCCSSCEEEEEECSSC
T ss_pred CCCC-CeEEEEEEEeCCCCEEEEEeCC--CCEEEEEechhhcc-----cEEEcCCCEEEEEecccC
Confidence 4533 4688999998666554 56666 78888887743222 246889999999876433
No 92
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=41.28 E-value=19 Score=24.70 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=20.6
Q ss_pred hhhhccccccCCCCEEEEEEEEEeCCC
Q psy18072 53 RRIRSINKLIRVGKTEPVVVIRVDKEK 79 (174)
Q Consensus 53 ~~v~~~~~~l~vGd~V~vrVi~Vd~~~ 79 (174)
+.+......+++|+.+.++|.++.+.+
T Consensus 20 ~p~~~~~~~~~~G~iv~G~V~~v~~~G 46 (109)
T 2khj_A 20 HMFNNWVALNKKGAIVTGKVTAVDAKG 46 (109)
T ss_dssp -CHHHHTTTCCSSSEEEEEEEEECSSC
T ss_pred CHHHHHhhcCCCCCEEEEEEEEEECCe
Confidence 334444567899999999999998765
No 93
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=38.88 E-value=48 Score=23.07 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=38.3
Q ss_pred CCEEEEEEEEEecceE-EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEe
Q psy18072 16 EDVVMVTVISIAEMGA-YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVD 76 (174)
Q Consensus 16 GdiV~G~V~~i~~~Ga-fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd 76 (174)
...+.|+|+.....+. -|.+.+ +..=+.|++-=.+.+ -.++.||.|.|.....+
T Consensus 19 e~e~~g~V~~~lgn~~~~V~l~n--G~~~la~i~GKmRk~-----IwI~~GD~VlVe~~~yd 73 (102)
T 1jt8_A 19 ENEILGIIEQMLGASRVRVRCLD--GKTRLGRIPGRLKNR-----IWVREGDVVIVKPWEVQ 73 (102)
T ss_dssp SCCEEEEEECSSCSSEEEEEEET--TEEEEEECCHHHHHH-----HCCCSCEEEEECCBCCT
T ss_pred CCEEEEEEEEEcCCCEEEEEECC--CCEEEEEEcccceee-----EEecCCCEEEEEeccCC
Confidence 4568999999866655 467777 888888887433333 35889999988766544
No 94
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=37.54 E-value=62 Score=28.56 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=34.3
Q ss_pred EEEEEEEEEecce--EEEEECCC-CCeEEEEEceecchhhhhccccccCCCCEEEEE
Q psy18072 18 VVMVTVISIAEMG--AYVHLLEY-NNIEGMILLSELSRRRIRSINKLIRVGKTEPVV 71 (174)
Q Consensus 18 iV~G~V~~i~~~G--afV~L~~~-~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vr 71 (174)
.|.|.|..+...| +|+.|... +.++.++....+....+...-+.++.|+.|.|+
T Consensus 68 ~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~ 124 (504)
T 1e1o_A 68 SVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGAR 124 (504)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEE
T ss_pred EEEEEEEEEecCCCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEE
Confidence 4789999997765 89999762 235666655444433222112568889988663
No 95
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=37.44 E-value=35 Score=23.57 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=28.6
Q ss_pred CEEEEEEEEEecceEEEEECCCCCe-EEEEEceecchhhhhccccccCCCCEEEEEEE
Q psy18072 17 DVVMVTVISIAEMGAYVHLLEYNNI-EGMILLSELSRRRIRSINKLIRVGKTEPVVVI 73 (174)
Q Consensus 17 diV~G~V~~i~~~GafV~L~~~~~~-~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi 73 (174)
..+.|+|..+...|..+.+.= .. .|..-...++...... -.+++|+.|.+.+.
T Consensus 82 N~l~g~V~~i~~~G~~~~v~v--~~~~g~~l~a~it~~~~~~--l~l~~G~~V~~~~k 135 (145)
T 1h9m_A 82 NILTGTVKTIETGAVNAEVTL--ALQGGTEITSMVTKEAVAE--LGLKPGASASAVIK 135 (145)
T ss_dssp EEEEEEEEEEEECSSEEEEEE--EETTSCEEEEEEEHHHHHH--TTCCTTCEEEEEEC
T ss_pred EEEEEEEEEEEeCCceEEEEE--EeCCCCEEEEEEcHHHHhh--cCCCCCCEEEEEEc
Confidence 478999999987775433311 01 0111112222222221 24789999998764
No 96
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=37.41 E-value=42 Score=29.54 Aligned_cols=53 Identities=15% Similarity=0.299 Sum_probs=33.5
Q ss_pred EEEEEEEEEecce--EEEEECCCC-CeEEEEEceecchhhhhccccccCCCCEEEEE
Q psy18072 18 VVMVTVISIAEMG--AYVHLLEYN-NIEGMILLSELSRRRIRSINKLIRVGKTEPVV 71 (174)
Q Consensus 18 iV~G~V~~i~~~G--afV~L~~~~-~~~GlI~iSels~~~v~~~~~~l~vGd~V~vr 71 (174)
.|.|.|..+...| +|+.|.... .++.++..+.++...+... +.++.|+.|.|+
T Consensus 60 ~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~-~~l~~g~~v~V~ 115 (493)
T 3a74_A 60 AVAGRIMTKRGMGKAGFAHIQDVTGQIQIYVRQDDVGEQQYELF-KISDLGDIVGVR 115 (493)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTEEEEEEEEHHHHHHHHHHHH-HHCCTTCEEEEE
T ss_pred EEEEEEEEEecCCCcEEEEEEECCEeEEEEEECCcCCHHHHHHH-hcCCCCCEEEEE
Confidence 4789999997765 899997622 3566665443432222222 458888888663
No 97
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=36.75 E-value=7.3 Score=32.78 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q psy18072 129 ELARQMER 136 (174)
Q Consensus 129 ~~k~~~~~ 136 (174)
.|+.++.+
T Consensus 269 ~F~k~~~~ 276 (335)
T 4fp9_B 269 VFKKLLAR 276 (335)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444444
No 98
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=34.81 E-value=10 Score=33.03 Aligned_cols=13 Identities=8% Similarity=-0.107 Sum_probs=7.4
Q ss_pred cCC-CCEEEEEEEE
Q psy18072 62 IRV-GKTEPVVVIR 74 (174)
Q Consensus 62 l~v-Gd~V~vrVi~ 74 (174)
++. |..+++++++
T Consensus 276 WK~~GknlT~k~~k 289 (417)
T 2ayu_A 276 WKDNAHNVTVDLEM 289 (417)
T ss_dssp BSCTTTCTTEEEEE
T ss_pred eecCCCCcchhhhh
Confidence 445 6666666553
No 99
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=34.48 E-value=78 Score=19.16 Aligned_cols=39 Identities=23% Similarity=0.106 Sum_probs=29.8
Q ss_pred CCCCCCEEEEEEEEEec--ceEEEEECCCCCeEEEEEceecc
Q psy18072 12 YPEVEDVVMVTVISIAE--MGAYVHLLEYNNIEGMILLSELS 51 (174)
Q Consensus 12 ~p~~GdiV~G~V~~i~~--~GafV~L~~~~~~~GlI~iSels 51 (174)
|..-|..+.|+|.++.. ..+.|....|+ -.-.++.++|.
T Consensus 14 ~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYG-n~e~v~~~~Lr 54 (59)
T 1mhn_A 14 WSEDGCIYPATIASIDFKRETCVVVYTGYG-NREEQNLSDLL 54 (59)
T ss_dssp CTTTSCEEEEEEEEEETTTTEEEEEETTTT-EEEEEEGGGCB
T ss_pred ECCCCCEEEEEEEEEcCCCCEEEEEEEcCC-CEEEEcHHHee
Confidence 33358899999999974 67888888885 56778877764
No 100
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=33.22 E-value=55 Score=28.21 Aligned_cols=56 Identities=7% Similarity=0.068 Sum_probs=33.8
Q ss_pred CCCE--EEEEEEEEecce--EEEEECCCC-CeEEEEEceecchhhhhccccccCCCCEEEEE
Q psy18072 15 VEDV--VMVTVISIAEMG--AYVHLLEYN-NIEGMILLSELSRRRIRSINKLIRVGKTEPVV 71 (174)
Q Consensus 15 ~Gdi--V~G~V~~i~~~G--afV~L~~~~-~~~GlI~iSels~~~v~~~~~~l~vGd~V~vr 71 (174)
.|+. +.|.|.++...| +|+.|.... .++.++..+.++...+... ..++.|+.|.|+
T Consensus 15 ~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~-~~l~~~~~v~v~ 75 (434)
T 1x54_A 15 DGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKA-KKLGRESSVIVE 75 (434)
T ss_dssp TTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECHHHHCHHHHHHH-HTCCTTCEEEEE
T ss_pred CCCEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEECCcCCHHHHHHH-hcCCCCCEEEEE
Confidence 4654 789999997765 799997622 2455554333332222222 457888888664
No 101
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=32.99 E-value=67 Score=19.01 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=25.3
Q ss_pred CCCCEEEEEEEEEecc--eEEEEECCCCCeEEEEEceec
Q psy18072 14 EVEDVVMVTVISIAEM--GAYVHLLEYNNIEGMILLSEL 50 (174)
Q Consensus 14 ~~GdiV~G~V~~i~~~--GafV~L~~~~~~~GlI~iSel 50 (174)
.-|..+.|+|.++... -+-|....|+ -...++.++|
T Consensus 14 ~Dg~wYrA~I~~i~~~~~~~~V~fvDYG-n~e~v~~~~l 51 (54)
T 3s6w_A 14 EDNKFYRAEVEALHSSGMTAVVKFIDYG-NYEEVLLSNI 51 (54)
T ss_dssp TTTEEEEEEEEEC--CCSEEEEEETTTC-CEEEEEGGGE
T ss_pred CCCCEEEEEEEEEeCCCCEEEEEEEccC-CeEEEeHHHE
Confidence 3578999999999643 3667777785 5677777765
No 102
>2l74_A Putative uncharacterized protein PA4608; PILZ, C-DI-GMP, unknown function, C-DI-GMP binding P; HET: C2E; NMR {Pseudomonas aeruginosa}
Probab=31.92 E-value=86 Score=22.54 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=20.1
Q ss_pred CCEEEEEEEEEecceEEEEECC
Q psy18072 16 EDVVMVTVISIAEMGAYVHLLE 37 (174)
Q Consensus 16 GdiV~G~V~~i~~~GafV~L~~ 37 (174)
|..+.|++..+...|++|.+..
T Consensus 46 g~~~~~~~~DiSl~G~~I~~~~ 67 (145)
T 2l74_A 46 ERRWEVLLHDVSLHGILVGQPQ 67 (145)
T ss_dssp TEEEEEEEEEEETTEEEEECCT
T ss_pred CEEEEEEEEEeccCCCEEEcCC
Confidence 8889999999999999999864
No 103
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=31.52 E-value=29 Score=23.15 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=16.2
Q ss_pred cccCCCCEEEEEEEEEeCC
Q psy18072 60 KLIRVGKTEPVVVIRVDKE 78 (174)
Q Consensus 60 ~~l~vGd~V~vrVi~Vd~~ 78 (174)
..+++||+|.++++..+..
T Consensus 11 ~iYrPGetV~~~~~~~~~~ 29 (102)
T 2p9r_A 11 SIYKPGQTVKFRVVSMDEN 29 (102)
T ss_dssp SEECTTCEEEEEEEEECGG
T ss_pred cccCCCCEEEEEEEEECCC
Confidence 6799999999999987654
No 104
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=31.27 E-value=85 Score=21.44 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=41.3
Q ss_pred hhhccccccCCCCEE-EEEEEEEeCCCceeee-cccccchHHHHHHHHHHHHHHHhhhCCee
Q psy18072 54 RIRSINKLIRVGKTE-PVVVIRVDKEKVMTTV-TPEKADGLKALQEAIDTIKAKIEQLGGVF 113 (174)
Q Consensus 54 ~v~~~~~~l~vGd~V-~vrVi~Vd~~~~l~ls-~~~k~~g~~~i~~~~~~i~~~l~~~~g~l 113 (174)
.+..+...+++.+.| +..++++...+.+.+. ...+.+.-.++.+..+++.+.|..+||.+
T Consensus 18 ~v~eler~~r~~e~vlR~l~v~~e~Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~gG~i 79 (96)
T 2kjw_A 18 RVNDLARELRIRDNVRRVMVVASTTPGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARV 79 (96)
T ss_dssp HHHHHHHHHHHCTTCSEEEEEECSSSSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhccchhhhhhhheehhhhhhhheeeeeCCCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 344444566666544 7888887754444333 44555667789999999999999999865
No 105
>1ywu_A Hypothetical protein PA4608; PAT7, beta barrel, PILZ domain, structural genomics, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.45.2.1
Probab=29.79 E-value=1e+02 Score=22.22 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=20.1
Q ss_pred CCEEEEEEEEEecceEEEEECC
Q psy18072 16 EDVVMVTVISIAEMGAYVHLLE 37 (174)
Q Consensus 16 GdiV~G~V~~i~~~GafV~L~~ 37 (174)
|..+.|++..+...|++|.++.
T Consensus 48 g~~~~~~~~DiS~~G~~I~~~~ 69 (149)
T 1ywu_A 48 ERRWEVLLHDVSLHGILVGQPQ 69 (149)
T ss_dssp TEEEEEEEEEECSSEEEEECSS
T ss_pred CEEEEEEEEEeccccCEEEcCC
Confidence 7889999999999999999864
No 106
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=29.61 E-value=54 Score=26.40 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=37.6
Q ss_pred hhhccCCCCCCEE-----EEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccc
Q psy18072 7 FYAEKYPEVEDVV-----MVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSIN 59 (174)
Q Consensus 7 ~~~~~~p~~GdiV-----~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~ 59 (174)
++..+|. +||.| .|+|.+|.=+-.-+...+ +..=.||.|.+....+.|.+
T Consensus 125 ~~~~pf~-vGD~I~i~g~~G~V~~I~l~~T~i~t~d--g~~v~IPNs~l~~~~i~N~s 179 (286)
T 2vv5_A 125 VMFRPFR-AGEYVDLGGVAGTVLSVQIFSTTMRTAD--GKIIVIPNGKIIAGNIINFS 179 (286)
T ss_dssp HTTCSSC-TTCEEESSSCEEEEEEECSSEEEEECTT--SCEEEEEHHHHHTSCEEESS
T ss_pred HhcCCcc-CCCEEEECCEEEEEEEEEeEEEEEEeCC--CCEEEechHHHhhCceEECC
Confidence 3566775 99986 699999877666666555 78899999999877776544
No 107
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=29.45 E-value=91 Score=20.17 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=25.7
Q ss_pred CCCEEEEEEEEEecc--eEEEEECCCCCeEEEEEceecc
Q psy18072 15 VEDVVMVTVISIAEM--GAYVHLLEYNNIEGMILLSELS 51 (174)
Q Consensus 15 ~GdiV~G~V~~i~~~--GafV~L~~~~~~~GlI~iSels 51 (174)
-|..|.|+|.++... -+-|....|+ -...++.++|.
T Consensus 31 Dg~wYRA~I~~i~~~~~~~~V~fvDYG-N~e~V~~~~Lr 68 (77)
T 3pnw_C 31 DNKFYRAEVEALHSSGMTAVVKFIDYG-NYEEVLLSNIK 68 (77)
T ss_dssp TTEEEEEEEEEECTTSSEEEEEETTTC-CEEEEEGGGEE
T ss_pred CCCEEEEEEEEEeCCCCEEEEEEEcCC-CeEEEeHHHeE
Confidence 466788999999653 3667777775 57777777664
No 108
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=29.02 E-value=42 Score=21.18 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=28.9
Q ss_pred HHHHHHHhhhCCeeEEeeCceeEeccCHHHHHHHHHHHHHhc
Q psy18072 100 DTIKAKIEQLGGVFQVQMAPKVVTASDEAELARQMERAEAEN 141 (174)
Q Consensus 100 ~~i~~~l~~~~g~l~~k~~P~~i~~~~~~~~k~~~~~l~k~~ 141 (174)
..+..+|+.+||+|.+.-=.+ .-+.++.....+|.+|...+
T Consensus 13 ~~lL~yIr~sGGildI~~~a~-kygV~kdeV~~~LrrLe~KG 53 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSK-VYGVEKQEVVKLLEALKNKG 53 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHH-HHCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEeHHHHHH-HhCCCHHHHHHHHHHHHHCC
Confidence 457899999999998731111 11668888888888887654
No 109
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=28.24 E-value=1e+02 Score=18.98 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=22.3
Q ss_pred CCCCEEEEEEEEEecceEEE-EECCCCCeEEEEEceec
Q psy18072 14 EVEDVVMVTVISIAEMGAYV-HLLEYNNIEGMILLSEL 50 (174)
Q Consensus 14 ~~GdiV~G~V~~i~~~GafV-~L~~~~~~~GlI~iSel 50 (174)
+.|+++. |....+.|++. .+. .++..|++|.+-+
T Consensus 26 ~~Gd~i~--v~~~~~~gWw~g~~~-~~g~~G~~P~nyV 60 (65)
T 2lj0_A 26 RDGDIVD--VMEKCDDGWFVGTSR-RTKQFGTFPGNYV 60 (65)
T ss_dssp CTTCEEE--EEEECTTSEEEEEET-TTCCEEEEETTSE
T ss_pred CCCCEEE--EeEeCCCCEEEEEEC-CCCCEEEEehhHe
Confidence 3799885 44556678766 343 1268999997643
No 110
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=28.15 E-value=2e+02 Score=22.08 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=37.0
Q ss_pred EEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeCCC
Q psy18072 18 VVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEK 79 (174)
Q Consensus 18 iV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~~~ 79 (174)
.+.|+|..+.+..+.|+..+. +|+=+++.+.++ ..-.+|+.+...+.-.-.+.
T Consensus 4 ~l~G~l~~~~~~~vvidv~GV-GY~v~~~~~t~~--------~l~~~g~~v~l~~~~~vRed 56 (203)
T 1cuk_A 4 RLRGIIIEKQPPLVLIEVGGV-GYEVHMPMTCFY--------ELPEAGQEAIVFTHFVVRED 56 (203)
T ss_dssp EEEEEEEEEETTEEEEEETTE-EEEEECCHHHHT--------TCCCTTSEEEEEEEEEEETT
T ss_pred eEEEEEEEEeCCEEEEEECCE-EEEEEcCHHHHH--------hcCCCCCeEEEEEEEEEeeh
Confidence 578999999999999998653 366555555443 22247999988776654444
No 111
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=27.84 E-value=1.9e+02 Score=21.49 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=26.4
Q ss_pred CCCEEEEEEEEEecceEEEEECCCCCeEEEEEceec
Q psy18072 15 VEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSEL 50 (174)
Q Consensus 15 ~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSel 50 (174)
-|..+.|+|.++.+..+.|.+.+|+ ....++.+.|
T Consensus 65 d~~wyRa~V~~v~~~~~~V~~vDyG-~~~~v~~~~l 99 (218)
T 2wac_A 65 DNQWYRAKVERVQGSNATVLYIDYG-NKETLPTNRL 99 (218)
T ss_dssp TCCEEEEEEEEEETTEEEEEETTTC-CEEEEEGGGE
T ss_pred CCeEEEEEEEEecCCeEEEEEEecC-CeEEEchHHc
Confidence 4778999999998878888887775 4556666554
No 112
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=26.45 E-value=1.3e+02 Score=25.85 Aligned_cols=56 Identities=9% Similarity=0.079 Sum_probs=33.6
Q ss_pred CCCE--EEEEEEEEecce--EEEEECCCC-CeEEEEEceecchhhhhccccccCCCCEEEEE
Q psy18072 15 VEDV--VMVTVISIAEMG--AYVHLLEYN-NIEGMILLSELSRRRIRSINKLIRVGKTEPVV 71 (174)
Q Consensus 15 ~Gdi--V~G~V~~i~~~G--afV~L~~~~-~~~GlI~iSels~~~v~~~~~~l~vGd~V~vr 71 (174)
.|+. |.|.|.++...| +|+.|.... .++.++....++...+.. -+.++.|+.|.|+
T Consensus 15 ~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~-~~~l~~~~~V~V~ 75 (438)
T 3nem_A 15 NGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKL-IPKLRSEDVVAVE 75 (438)
T ss_dssp TTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSCHHHHHH-GGGCCTTCEEEEE
T ss_pred CCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCcCCHHHHHH-HhcCCCCCEEEEE
Confidence 4655 689999997654 699997622 245555544443322222 2357888887663
No 113
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=26.24 E-value=1.4e+02 Score=24.15 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=38.7
Q ss_pred cccchhhccCCCCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccC--CCCEEEEEEEEE
Q psy18072 3 LSCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIR--VGKTEPVVVIRV 75 (174)
Q Consensus 3 ~~~r~~~~~~p~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~--vGd~V~vrVi~V 75 (174)
|.++.+...-++.|..=.|.|......|.||.+.- ...+.+. +. +|.+|.|++.+.
T Consensus 90 L~~phH~~~~~~~~~yREGvv~~~~~~~~~VdiGl----~~~v~~~-------------~p~~~g~RVTV~~~~~ 147 (268)
T 1k3r_A 90 LRTPHHPTGKPVTGEYRQGLTVKRVKKGTLVDIGA----DKLALCR-------------EKLTVNRIMSFRVVRL 147 (268)
T ss_dssp CCCTTSCCSSCCTTCEEEEEEEEECSSSEEEESSS----SCEEECS-------------SCCCSSCEEEEEEEEC
T ss_pred CCCCCCCCCCCCccceEEEEEEEecCCceEEEeCC----CceEEEe-------------cCCCCCcEEEEEecCC
Confidence 66666654435689999999998877789999854 2333321 33 788888887654
No 114
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=26.23 E-value=27 Score=22.85 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=18.4
Q ss_pred cccccCCCCEEEEEEEEEeCCC
Q psy18072 58 INKLIRVGKTEPVVVIRVDKEK 79 (174)
Q Consensus 58 ~~~~l~vGd~V~vrVi~Vd~~~ 79 (174)
....+.+|+.|.++|+.+..+.
T Consensus 8 ~GEsI~IGd~I~ItVl~v~g~~ 29 (70)
T 2jpp_A 8 VGESINIGDDITITILGVSGQQ 29 (70)
T ss_dssp TTCEEEETTTEEEEEEEEETTE
T ss_pred CCCeEEECCCEEEEEEEEeCCE
Confidence 3467889999999999998754
No 115
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=25.94 E-value=28 Score=23.01 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.2
Q ss_pred ccccccCCCCEEEEEEEEEeCCC
Q psy18072 57 SINKLIRVGKTEPVVVIRVDKEK 79 (174)
Q Consensus 57 ~~~~~l~vGd~V~vrVi~Vd~~~ 79 (174)
.+...+.+||.|+++|+.+..+.
T Consensus 19 K~GEsI~IGddI~ItVl~i~g~q 41 (73)
T 1vpz_A 19 RVGETLMVGDDVTVTVLGVKGNQ 41 (73)
T ss_dssp ETTCEEEETTTEEEEEEEEETTE
T ss_pred cCCCEEEeCCCEEEEEEEEeCCE
Confidence 34578889999999999998765
No 116
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=25.84 E-value=28 Score=22.27 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=18.5
Q ss_pred cccccCCCCEEEEEEEEEeCCC
Q psy18072 58 INKLIRVGKTEPVVVIRVDKEK 79 (174)
Q Consensus 58 ~~~~l~vGd~V~vrVi~Vd~~~ 79 (174)
+...+.+|+.|.++|+.+..+.
T Consensus 10 ~GE~I~Igd~I~I~Vl~i~g~~ 31 (63)
T 2bti_A 10 VGETLMIGDEVTVTVLGVKGNQ 31 (63)
T ss_dssp TTCEEEETTTEEEEEEEEETTE
T ss_pred CCCeEEeCCCEEEEEEEEeCCE
Confidence 3477889999999999998754
No 117
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=25.28 E-value=1.6e+02 Score=19.71 Aligned_cols=37 Identities=27% Similarity=0.131 Sum_probs=28.3
Q ss_pred CCCCEEEEEEEEEec--ceEEEEECCCCCeEEEEEceecc
Q psy18072 14 EVEDVVMVTVISIAE--MGAYVHLLEYNNIEGMILLSELS 51 (174)
Q Consensus 14 ~~GdiV~G~V~~i~~--~GafV~L~~~~~~~GlI~iSels 51 (174)
.-|.+|.|+|.+|.. ..+.|....|++ .-.++.+.|.
T Consensus 23 ~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN-~E~V~~~~Lr 61 (88)
T 1g5v_A 23 EDGCIYPATIASIDFKRETCVVVYTGYGN-REEQNLSDLL 61 (88)
T ss_dssp TTCCEEEEEEEEEETTTTEEEEEETTTCC-EEEEEGGGCB
T ss_pred CCCCEEEEEEEEecCCCCEEEEEEecCCC-EEEEcHHHcc
Confidence 358899999999975 678888888864 4567777654
No 118
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.00 E-value=46 Score=23.32 Aligned_cols=28 Identities=14% Similarity=-0.035 Sum_probs=21.7
Q ss_pred hhhhhccccccCCCCEEEEEEEEEeCCC
Q psy18072 52 RRRIRSINKLIRVGKTEPVVVIRVDKEK 79 (174)
Q Consensus 52 ~~~v~~~~~~l~vGd~V~vrVi~Vd~~~ 79 (174)
..+...+...+++|+.+.++|.+|..-+
T Consensus 10 ~~~~~~~~~~~~vG~iv~G~V~~I~~fG 37 (119)
T 2cqo_A 10 SGRPETMENLPALYTIFQGEVAMVTDYG 37 (119)
T ss_dssp CCCCCCSCCSCCTTCEEEEEEEEEETTE
T ss_pred ccchhhhhcccCCCCEEEEEEEEEeCce
Confidence 3344455577899999999999998765
No 119
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=24.93 E-value=1.3e+02 Score=21.66 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=27.7
Q ss_pred CCCEEEEEEEEEec--------c-eEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEE
Q psy18072 15 VEDVVMVTVISIAE--------M-GAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVV 71 (174)
Q Consensus 15 ~GdiV~G~V~~i~~--------~-GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vr 71 (174)
.|.+++=+|..... | -++|+|.+ +...|+++-. ..+++|+.|++.
T Consensus 81 ~GtV~S~Tvv~~~~~~~~~~~Py~valVeLde--g~~~l~~~~~----------~~v~iGm~V~vv 134 (145)
T 3irb_A 81 EAYVDSYTIIYNDDEGNKLAQPVYIALIRFPN--IEGGLLCYAE----------GNVKVGAKAKIL 134 (145)
T ss_dssp GCEEEEEEEEEECTTSCEEEEEEEEEEEECTT--CEECEEEEEE----------ESCCTTCBCEEE
T ss_pred ceEEEEEEEEeecCCCCccCCCEEEEEEEeCC--CceEEecccC----------CcCCCCCEEEEE
Confidence 46777766665432 2 25778877 5555555432 458899887764
No 120
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=24.88 E-value=42 Score=25.32 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=24.1
Q ss_pred ccchhhccCCCCCCEEEEEEEEE-ecceEEEEEC
Q psy18072 4 SCRFYAEKYPEVEDVVMVTVISI-AEMGAYVHLL 36 (174)
Q Consensus 4 ~~r~~~~~~p~~GdiV~G~V~~i-~~~GafV~L~ 36 (174)
+|+|.-.-.. -|.+..|+|++- .+.-+.|...
T Consensus 57 kCPf~G~lsv-Rgr~l~G~VVS~KMdKTIvV~ve 89 (156)
T 3u5c_L 57 KCPFTGLVSI-RGKILTGTVVSTKMHRTIVIRRA 89 (156)
T ss_dssp TCTTTSSCCE-EEEEEEEEEEECCSTTEEEEEEE
T ss_pred cCCcccceeE-eeEEEEEEEEeecCCCeEEEEEE
Confidence 6998877665 799999999987 3556667653
No 121
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=24.19 E-value=1.5e+02 Score=19.08 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=29.7
Q ss_pred cCCCCCCEEEEEEEEEec--ceEEEEECCCCCeEEEEEceecc
Q psy18072 11 KYPEVEDVVMVTVISIAE--MGAYVHLLEYNNIEGMILLSELS 51 (174)
Q Consensus 11 ~~p~~GdiV~G~V~~i~~--~GafV~L~~~~~~~GlI~iSels 51 (174)
+|..-|..|.++|.++.. .-+.|....|+ -...|+.++|.
T Consensus 19 ~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYG-N~e~V~~~~Lr 60 (78)
T 2d9t_A 19 LYWEDNKFYRAEVEALHSSGMTAVVKFTDYG-NYEEVLLSNIK 60 (78)
T ss_dssp ECTTTCCEEEEEEEEECSSSSEEEEEETTTT-EEEEEEGGGEE
T ss_pred EECCCCCEEEEEEEEEeCCCCEEEEEEEcCC-CeEEEcHHHeE
Confidence 343358899999999975 45788888885 67778877764
No 122
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=24.12 E-value=1.7e+02 Score=19.63 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCeeEEee-CceeEe----------ccCHHHHHHHHHHHHHhc
Q psy18072 92 LKALQEAIDTIKAKIEQLGGVFQVQM-APKVVT----------ASDEAELARQMERAEAEN 141 (174)
Q Consensus 92 ~~~i~~~~~~i~~~l~~~~g~l~~k~-~P~~i~----------~~~~~~~k~~~~~l~k~~ 141 (174)
...+.+.++.|+-.|...||.+.+.. ...++. .+|..-+|..+++.+++.
T Consensus 9 ~~~I~~~L~~IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~ 69 (88)
T 1xhj_A 9 FDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEE 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHh
Confidence 45788888889999999999988842 122333 446678888899888863
No 123
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=23.93 E-value=2.2e+02 Score=23.95 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=29.7
Q ss_pred CCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEEeC
Q psy18072 15 VEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDK 77 (174)
Q Consensus 15 ~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~Vd~ 77 (174)
.++++..+|.++...|-=|.-.+ +..=||+ ..+ +|+.|.|+|.+..+
T Consensus 13 ~~~~~~~~i~~l~~~G~Gv~~~~--g~~vfV~-------------~al-pGe~v~~~i~~~~~ 59 (433)
T 1uwv_A 13 TRQIITVSVNDLDSFGQGVARHN--GKTLFIP-------------GLL-PQENAEVTVTEDKK 59 (433)
T ss_dssp --CCEEEEEEEECTTSEEEEEET--TEEEEEE-------------TCC-TTCEEEEEEEEECS
T ss_pred CCCEEEEEEEEecCCCceEEEeC--CEEEEcC-------------CCC-CCCEEEEEEEeecC
Confidence 34668888888876666544323 3333444 334 89999999998654
No 124
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=23.46 E-value=1.7e+02 Score=22.39 Aligned_cols=57 Identities=7% Similarity=0.084 Sum_probs=31.8
Q ss_pred CCCEEEEEEEEEe-cceEEEEECCCCCeEEEEEceecchhhhhccccccC----CCCEEEEEEEEEeC
Q psy18072 15 VEDVVMVTVISIA-EMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIR----VGKTEPVVVIRVDK 77 (174)
Q Consensus 15 ~GdiV~G~V~~i~-~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~----vGd~V~vrVi~Vd~ 77 (174)
-|..+.|+|.++. ...+.|.+.+|+ ....++.++|. .+...|. +.+.+++++..+++
T Consensus 78 d~~wyRa~V~~~~~~~~~~V~~vDyG-n~~~v~~~~lr-----~l~~~~~~~~lp~~a~~~~L~~v~~ 139 (246)
T 2hqx_A 78 DGEWYRARVEKVESPAKIHVFYIDYG-NREVLPSTRLG-----TLSPAFSTRVLPAQATEYAFAFIQV 139 (246)
T ss_dssp TSCEEEEEEEEEEETTEEEEEETTTC-CEEEECGGGEE-----CCCGGGSTTTSCCCC----------
T ss_pred CCCEEEEEEEEEcCCCeEEEEEEeCC-CeEEEeHHHhh-----cCCHhHcCCCCchhhhhhhhhceec
Confidence 4778999999996 467788888885 56677766653 2222332 67888888877764
No 125
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=23.44 E-value=1.7e+02 Score=22.31 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=31.8
Q ss_pred CCEEEEEEEEEecce----EEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEE
Q psy18072 16 EDVVMVTVISIAEMG----AYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIR 74 (174)
Q Consensus 16 GdiV~G~V~~i~~~G----afV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~ 74 (174)
-..+.|+|..+...| +.+++.+...+.++|.... .-.+++|+.|.|.|..
T Consensus 203 rN~l~g~V~~i~~~~~~~~v~l~l~~~~~l~a~it~~s---------~l~L~~G~~v~a~ika 256 (265)
T 1b9m_A 203 DNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNE---------ATSLQQGQNVTAYFNA 256 (265)
T ss_dssp SEEEEEEEEEEEECSSEEEEEEECTTSCEEEEEEEHHH---------HTTCCTTCEEEEEECG
T ss_pred CcEEEEEEEEEEECCceEEEEEEeCCCCEEEEEECChh---------hcCCCCCCEEEEEEcc
Confidence 357999999996655 3455533223555554321 1358999999998753
No 126
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=23.31 E-value=1.2e+02 Score=19.93 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=26.6
Q ss_pred CCCEEEEEEEEEec-ceEEEEECCCCCeEEEEEceecc
Q psy18072 15 VEDVVMVTVISIAE-MGAYVHLLEYNNIEGMILLSELS 51 (174)
Q Consensus 15 ~GdiV~G~V~~i~~-~GafV~L~~~~~~~GlI~iSels 51 (174)
-|.++.|+|.++.. ..+.|.+-+|+ ....++.++|.
T Consensus 41 d~~wyRA~I~~~~~~~~~~V~fvDyG-n~e~v~~~~lr 77 (94)
T 3fdr_A 41 NGSWYRARVLGTLENGNLDLYFVDFG-DNGDCPLKDLR 77 (94)
T ss_dssp TTEEEEEEEEEECTTSCEEEEETTTC-CEEEECGGGCE
T ss_pred CCeEEEEEEEEECCCCeEEEEEEcCC-CeEEEEHHHhh
Confidence 56778889999865 36788888885 66777777664
No 127
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=23.01 E-value=82 Score=24.24 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=34.2
Q ss_pred EEEEEEEEecc--eEEEEECCCCCeEEEEEceecchh-hhhccccccCCCCEEEE--EEEEEeC
Q psy18072 19 VMVTVISIAEM--GAYVHLLEYNNIEGMILLSELSRR-RIRSINKLIRVGKTEPV--VVIRVDK 77 (174)
Q Consensus 19 V~G~V~~i~~~--GafV~L~~~~~~~GlI~iSels~~-~v~~~~~~l~vGd~V~v--rVi~Vd~ 77 (174)
+.|+|+.+.+. -+-+...+ +++-|||+-==+-. .-+-....++.||.|++ .++++|.
T Consensus 78 ~dG~V~~vfpT~HAigi~s~~--G~EvLIHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 78 VNGTIGKIFETNHAFSIESDD--GVELFVHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp SSEEEEEECTTSSEEEEEETT--SCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred CCeEEEEECCCCCEEEEEeCC--CCEEEEEecccccccCCccceEEEeCcCEEcCCCEEEEECH
Confidence 47899988553 33455556 89999997621111 11122356778888766 5566654
No 128
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=22.29 E-value=86 Score=28.41 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=34.6
Q ss_pred CCCEEEEEEEEEecceEEEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEEE
Q psy18072 15 VEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRV 75 (174)
Q Consensus 15 ~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~V 75 (174)
.-..+.|+|..-.+.-.||...+ +-+=||+..++. . .-.||.|.|+|+..
T Consensus 18 ~~~~~~G~~~~~~~GfgF~~~d~--~~difi~~~~~~--------~-a~~GD~V~v~i~~~ 67 (644)
T 2id0_A 18 QTPRAEGVVKATEKGFGFLEVDA--QKSYFIPPPQMK--------K-VMHGDRIIAVIHSE 67 (644)
T ss_dssp TSCEEEEEEECCSSSCEEEECSS--SCEEEECHHHHT--------T-SCTTCEEEEEEECC
T ss_pred hCCeEEEEEEEecCCcEEEEECC--CCCEEECHHHHh--------c-CCCCCEEEEEEecC
Confidence 34589999986544335777765 456788877665 3 33689999988753
No 129
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.08 E-value=16 Score=30.35 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHHHHh
Q psy18072 126 DEAELARQMERAEAE 140 (174)
Q Consensus 126 ~~~~~k~~~~~l~k~ 140 (174)
.+.+|+.+-++|...
T Consensus 248 T~~Al~~Lee~l~~~ 262 (293)
T 3bbo_G 248 TEGTIQYLNQRYGVD 262 (293)
T ss_dssp CTTHHHHHHHHSCC-
T ss_pred EHHHHHHHHHHhccc
Confidence 556787776666444
No 130
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=21.64 E-value=1.4e+02 Score=17.93 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCCCEEEEEEEEEecceEEEEECCCCCeEEEEEceec
Q psy18072 14 EVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSEL 50 (174)
Q Consensus 14 ~~GdiV~G~V~~i~~~GafV~L~~~~~~~GlI~iSel 50 (174)
+.|+++. |....+.|++.-..+ +..|++|.+-+
T Consensus 23 ~~Gd~i~--v~~~~~~~Ww~g~~~--g~~G~fP~~yv 55 (67)
T 2bzy_A 23 EVGDIVK--VTRMNINGQWEGEVN--GRKGLFPFTHV 55 (67)
T ss_dssp CTTCEEE--EEEECSSSEEEEEET--TEEEEEEGGGE
T ss_pred CCCCEEE--EEEecCCCeEEEEeC--CcEEEEehHHe
Confidence 3799887 334456677655444 78999997644
No 131
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=21.59 E-value=2e+02 Score=25.09 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=34.4
Q ss_pred CCCE--EEEEEEEEecce---EEEEECCC-CCeEEEEEce--e-cchhhhhccccccCCCCEEEEE
Q psy18072 15 VEDV--VMVTVISIAEMG---AYVHLLEY-NNIEGMILLS--E-LSRRRIRSINKLIRVGKTEPVV 71 (174)
Q Consensus 15 ~Gdi--V~G~V~~i~~~G---afV~L~~~-~~~~GlI~iS--e-ls~~~v~~~~~~l~vGd~V~vr 71 (174)
.|+. |.|.|.++...| +|+.|... +.++.++..+ . ++...... -..++.|+.|.|+
T Consensus 35 ~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~-~~~l~~e~~V~V~ 99 (487)
T 1eov_A 35 SDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKW-AGSLNLESIVLVR 99 (487)
T ss_dssp TTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHH-HTTCCTTCEEEEE
T ss_pred CCCEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccHHHHHH-HhcCCCCCEEEEE
Confidence 4664 789999998875 79999762 2356666543 1 33222211 2457888887653
No 132
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=21.41 E-value=2.8e+02 Score=21.74 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=44.7
Q ss_pred ccchhhccCCCCCCEEEEEEEEEec--ceE--EEEECCCCCeEEEEEceecchhhhhccccccCCCCEEEEEEEE
Q psy18072 4 SCRFYAEKYPEVEDVVMVTVISIAE--MGA--YVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIR 74 (174)
Q Consensus 4 ~~r~~~~~~p~~GdiV~G~V~~i~~--~Ga--fV~L~~~~~~~GlI~iSels~~~v~~~~~~l~vGd~V~vrVi~ 74 (174)
.|+.+..+- .+..+.|+|+.|.+ .|. -|...+ +-.-+++.+.+... .......+.+|-.|.|.-..
T Consensus 12 g~~vlg~k~--~~~W~rg~v~~I~~~~~g~~YkVkF~~--~g~~ivs~~hiA~~-~~p~~~~l~vG~RVVA~~~~ 81 (213)
T 3dlm_A 12 SMRILGKKR--TKTWHKGTLIAIQTVGPGKKYKVKFDN--KGKSLLSGNHIAYD-YHPPADKLYVGSRVVAKYKD 81 (213)
T ss_dssp TCEEEEECT--TSBEEEEEEEEEEEETTEEEEEEEESS--SCEEEECGGGEEES-SCCCGGGCCTTCEEEEEEEC
T ss_pred ccEEEEEec--CCcEEEEEEEEEEECCCCeEEEEEEcC--CCCEEeecceEEEe-cCCCccEEeEEEEEEEEecC
Confidence 467666663 58999999999966 354 566665 45667887777642 12334478899888776653
No 133
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=21.41 E-value=1.6e+02 Score=25.40 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=34.1
Q ss_pred CCEEEEEEEEE---ecce-EEEEECCCCCeEEEEEceecch-hhhhccccccCCCCEEEEE
Q psy18072 16 EDVVMVTVISI---AEMG-AYVHLLEYNNIEGMILLSELSR-RRIRSINKLIRVGKTEPVV 71 (174)
Q Consensus 16 GdiV~G~V~~i---~~~G-afV~L~~~~~~~GlI~iSels~-~~v~~~~~~l~vGd~V~vr 71 (174)
.=+|.|+|.+. ...| +|+.|.+ + .|-|..--+.. .+++++-..+.+||.|.|.
T Consensus 286 ~~~v~G~V~~~P~~~~GGHV~f~l~d--~-~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~ 343 (402)
T 3au7_A 286 SYRLRGRVTLEPYDIEGGHVFFEIDT--K-FGSVKCAAFEPTKQFRNVIRLLRKGDVVEVY 343 (402)
T ss_dssp EEEEEEEEEEEEEEETTTEEEEEEEE--T-TEEEEEEECGGGTTHHHHHTTCCTTCEEEEE
T ss_pred eEEEEEEEecCcEeccCceEEEEEEc--C-CCEEEEEEEccchHHHHHHhcCCCCCEEEEE
Confidence 44689999976 3446 8999975 3 23333333221 3466666788999999874
No 134
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=21.01 E-value=1.5e+02 Score=18.12 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=28.4
Q ss_pred CCCCEEEEEEEEEec--ceEEEEECCCCCeEEEEEceecc
Q psy18072 14 EVEDVVMVTVISIAE--MGAYVHLLEYNNIEGMILLSELS 51 (174)
Q Consensus 14 ~~GdiV~G~V~~i~~--~GafV~L~~~~~~~GlI~iSels 51 (174)
.-|..|.++|.++.. ..+.|....|+ -.-.++.+.|.
T Consensus 21 ~Dg~wYrA~I~~v~~~~~~~~V~fvdYG-n~e~V~~~~Lr 59 (64)
T 4a4f_A 21 EDGQCYEAEIEEIDEENGTAAITFAGYG-NAEVTPLLNLK 59 (64)
T ss_dssp TTSSEEEEEEEEEETTTTEEEEEETTTT-EEEEEEGGGEE
T ss_pred CCCCEEEEEEEEEcCCCCEEEEEEEecC-CEEEEeHHHcE
Confidence 358899999999975 46888888885 56677777653
No 135
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=20.34 E-value=1.7e+02 Score=18.31 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=26.5
Q ss_pred CCCEEEEEEEEEecc--eEEEEECCCCCeEEEEEceecc
Q psy18072 15 VEDVVMVTVISIAEM--GAYVHLLEYNNIEGMILLSELS 51 (174)
Q Consensus 15 ~GdiV~G~V~~i~~~--GafV~L~~~~~~~GlI~iSels 51 (174)
-|-.|-|+|.+|... -++|.... +.+-.++..+|+
T Consensus 16 DG~fYlGtI~~V~~~~~~clV~F~D--~s~~W~~~kdi~ 52 (58)
T 4hcz_A 16 DGLLYLGTIKKVDSAREVCLVQFED--DSQFLVLWKDIS 52 (58)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEETT--SCEEEEEGGGEE
T ss_pred CCCEEeEEEEEEecCCCEEEEEEcC--CCeEEEEhHHcc
Confidence 366788999999766 68999987 677776666554
No 136
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=20.03 E-value=1.1e+02 Score=23.53 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=20.0
Q ss_pred CCCCCCEEEEEEEEEecce--EEEEECC
Q psy18072 12 YPEVEDVVMVTVISIAEMG--AYVHLLE 37 (174)
Q Consensus 12 ~p~~GdiV~G~V~~i~~~G--afV~L~~ 37 (174)
+.++||+|.++|.++.+.+ +.+.+..
T Consensus 135 ~l~~GD~V~akVisi~~~~~~i~LS~k~ 162 (209)
T 2nn6_I 135 SFRPGDIVLAKVISLGDAQSNYLLTTAE 162 (209)
T ss_dssp TCCSSSEEEEEEEEEETTTTEEEEECCS
T ss_pred hcCCCCEEEEEEEEEeCCCCeEEEEEec
Confidence 3459999999999997642 6777765
Done!