RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18072
(174 letters)
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold,
helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1
b.40.4.5
Length = 182
Score = 110 bits (277), Expect = 2e-31
Identities = 67/78 (85%), Positives = 70/78 (89%)
Query: 2 PLSCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKL 61
LSCRFY K+PEVEDVVMV V SIAEMGAYV LLEYNNIEGMILLSELSRRRIRSINKL
Sbjct: 2 GLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKL 61
Query: 62 IRVGKTEPVVVIRVDKEK 79
IR+G+ E VVVIRVDKEK
Sbjct: 62 IRIGRNECVVVIRVDKEK 79
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Saccharomyces
cerevisiae} PDB: 2a1a_A* 1q46_A
Length = 175
Score = 105 bits (264), Expect = 1e-29
Identities = 59/77 (76%), Positives = 65/77 (84%)
Query: 3 LSCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLI 62
CRFY KYPE++D+VMV V IAEMGAYV LLEY+NIEGMILLSELSRRRIRSI KLI
Sbjct: 3 SHCRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLI 62
Query: 63 RVGKTEPVVVIRVDKEK 79
RVGK + VV+RVDKEK
Sbjct: 63 RVGKNDVAVVLRVDKEK 79
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo
sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Length = 308
Score = 101 bits (252), Expect = 2e-26
Identities = 63/77 (81%), Positives = 67/77 (87%)
Query: 3 LSCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLI 62
+SCRFY K+PEVEDVVMV V SI EMGAYV LLEYNNIEGMI LSELSRRRIRSINKLI
Sbjct: 1 MSCRFYQHKFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLI 60
Query: 63 RVGKTEPVVVIRVDKEK 79
R+G+ E V VIRVDKEK
Sbjct: 61 RIGRNECVKVIRVDKEK 77
Score = 81.2 bits (200), Expect = 5e-19
Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 41 IEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVD------KEKVMTTVTPEKADGLKA 94
I I ++ I ++ + +R G + + VMTT T E+ +GL
Sbjct: 188 IRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTTTLERTEGLSV 247
Query: 95 LQEAIDTIKAKIEQLGGVFQVQMAPKVVTASDEAELARQMERAEAENAEVAADDDED 151
L +A+ IK KIE+ GVF VQM PKVVT +DE ELARQMER E ENAEV D +
Sbjct: 248 LSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQMERLERENAEVDGDLEHH 304
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2,
initiation factor 2 alpha subunit, initiation factor 2
beta subunit; 2.80A {Sulfolobus solfataricus} PDB:
2aho_B 3v11_B*
Length = 266
Score = 97.8 bits (243), Expect = 2e-25
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 6 RFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVG 65
+ K P ++++ TV + + G+YV L EY ++ + SE+S + +++I +++
Sbjct: 2 IYSRSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKEN 61
Query: 66 KTEPVVVIRVDKEK 79
+ V VIRVD+ K
Sbjct: 62 RKVIVKVIRVDRRK 75
Score = 38.8 bits (90), Expect = 4e-04
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 80 VMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 117
+ V + +AL + I + ++ V
Sbjct: 228 RVDVVGTNPKEASEALNQIISNLIKIGKEENVDISVVK 265
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA
complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus
horikoshii} PDB: 1yz6_A
Length = 275
Score = 86.2 bits (213), Expect = 4e-21
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 6 RFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVG 65
A +YPE + V+ TV I GA++ L EY E + +SE++ +R+I ++ G
Sbjct: 2 PRKAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEG 61
Query: 66 KTEPVVVIRVDKEK 79
+ VIRVD K
Sbjct: 62 QKVVAKVIRVDPRK 75
Score = 53.1 bits (127), Expect = 4e-09
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 80 VMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMAPKVVTASDEAE 129
+ P+ + L++ + I I+Q GG + K + + +
Sbjct: 225 RIDITAPDYYKAEEVLEDIAEEILRVIKQAGGEATLLRKEKRIRKVKKRK 274
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral
protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Length = 88
Score = 57.3 bits (138), Expect = 1e-11
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 12 YPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLS-ELSRRRIRSINKLIRVGKTEPV 70
P DV+ V + Y++L +Y + E ++ S ++ R + VGKT V
Sbjct: 8 LPNAGDVIKGRV-YEKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKV 65
Query: 71 VVIRVDKEK 79
VIRVD K
Sbjct: 66 KVIRVDYTK 74
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical
domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Length = 188
Score = 55.6 bits (134), Expect = 2e-10
Identities = 7/50 (14%), Positives = 18/50 (36%)
Query: 80 VMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMAPKVVTASDEAE 129
+ P+ + L+ + I I++ GG + K + + +
Sbjct: 138 RIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKEKRIKKVKKRK 187
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein,
ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Length = 115
Score = 48.8 bits (117), Expect = 3e-08
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 9 AEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELS-RRRIRSINKLIRVGKT 67
A++YP + V ++ + G +V + E +EG++ +SE+ + +K++ VG
Sbjct: 25 AKRYP-EGTKLTGRVTNLTDYGCFVEIEE--GVEGLVHVSEMDWTNKNIHPSKVVNVGDV 81
Query: 68 EPVVVIRVDKEK 79
V+V+ +D+E+
Sbjct: 82 VEVMVLDIDEER 93
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein,
ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Length = 109
Score = 47.6 bits (114), Expect = 5e-08
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 8 YAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKT 67
+ +V V ++ GA V L + +EG + SE SR R+ ++ VG
Sbjct: 25 WVALNK-KGAIVTGKVTAVDAKGATVELAD--GVEGYLRASEASRDRVEDATLVLSVGDE 81
Query: 68 EPVVVIRVDKEK 79
VD++
Sbjct: 82 VEAKFTGVDRKN 93
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA
binding protein; NMR {Bacillus subtilis}
Length = 130
Score = 44.3 bits (105), Expect = 1e-06
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVV 72
EV V V + GA+V L E +G++ +SE++ ++ IN+ + VG V V
Sbjct: 5 FEVGSVYTGKVTGLQAYGAFVALDE--ETQGLVHISEVTHGFVKDINEHLSVGDEVQVKV 62
Query: 73 IRVDKEK 79
+ VD+EK
Sbjct: 63 LAVDEEK 69
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
4am3_A
Length = 726
Score = 40.2 bits (95), Expect = 2e-04
Identities = 13/65 (20%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVV 72
EV + V+ + + GA+V+ +G++ +S++S R+ + +++ G+ V +
Sbjct: 635 AEVGKIYDGKVVKVVDFGAFVNFF--GAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKL 692
Query: 73 IRVDK 77
+ D
Sbjct: 693 LGFDD 697
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 37.7 bits (88), Expect = 2e-04
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 13 PEVEDVVMVTVISIAEMGAYVHLLEY-NNIEGMILLSELS-RRRIRSINKLIRVGKTEPV 70
P + D+ V SI + G +V L EG++ +SEL R+ ++ ++ G+ V
Sbjct: 10 PTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKV 69
Query: 71 VVIRVDKEKV 80
V+ K
Sbjct: 70 KVLSFTGTKT 79
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
degradation, kinase, transferase; 2.60A {Escherichia
coli} PDB: 1sro_A
Length = 723
Score = 38.6 bits (91), Expect = 5e-04
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVV 72
EV V V I + GA+V + EG++ +S+++ +R+ + +++G+ PV V
Sbjct: 625 IEVGRVYTGKVTRIVDFGAFVAIG--GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 682
Query: 73 IRVDK 77
+ VD+
Sbjct: 683 LEVDR 687
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger,
structural genomics, PSI-2, protein structure
initiative; NMR {Methanocaldococcus jannaschii}
Length = 80
Score = 35.7 bits (83), Expect = 0.001
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVV 72
E V I + GA+++L E + G++ ++ R+ ++N VG V
Sbjct: 3 VEPGKFYKGVVTRIEKYGAFINLNE--QVRGLLRPRDMISLRLENLN----VGDEIIVQA 56
Query: 73 IRVDKEK 79
I V EK
Sbjct: 57 IDVRPEK 63
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 35.5 bits (82), Expect = 0.002
Identities = 12/70 (17%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 10 EKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEP 69
E P + + V + + GA++ + +G++ + +S R+ ++++ VG
Sbjct: 17 ENLPALYTIFQGEVAMVTDYGAFIKIPGCRK-QGLVHRTHMSSCRVDKPSEIVDVGDKVW 75
Query: 70 VVVIRVDKEK 79
V +I + +
Sbjct: 76 VKLIGREMKN 85
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 36.2 bits (84), Expect = 0.003
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 91 GLKALQEAIDTIKAKIEQLG-GVFQVQMAPKVVTASDEAELARQMERAEAENAEVAADDD 149
K + A + K K +L + + L ++ A+ E + DDD
Sbjct: 196 AAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKE---INGDDD 252
Query: 150 EDEEDFDNERDGDEGEDEEEGENED 174
EDE+D DN D+
Sbjct: 253 EDEDDSDNVMSSDDENAPVATNANA 277
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 35.6 bits (82), Expect = 0.005
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 18 VVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIR-SINKLIRVGKTEPVVVIRVD 76
++ V V + +E ++ + ++R N++ +GKT P VI +D
Sbjct: 908 IIPVRVERFWHNDIICTT--NSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYID 965
Query: 77 KEK 79
Sbjct: 966 YAN 968
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.009
Identities = 34/212 (16%), Positives = 64/212 (30%), Gaps = 78/212 (36%)
Query: 15 VEDVVMVTVISIAE------------------MGAYVH-----------LLEY--NNIEG 43
+ +V I+ + +G + +LE N EG
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 44 ----MILLSELSR----RRIRSINKLIRVGKTEPVVVIRV--DKEKVMTTVT--PEKADG 91
M+ +S L++ + N + + V + V K V V+ P+
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNS--HLPAGKQVEISLVNGAKNLV---VSGPPQ---S 385
Query: 92 LKALQEAIDTIKA--KIEQLGGVFQVQMAPKV------VTA---SDEAELARQMERAEAE 140
L L + KA ++Q F + K V + S L + A
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFS-ERKLKFSNRFLPVASPFHSH---L---LVPA--- 435
Query: 141 NAEVAADDDEDEEDFDNER------DGDEGED 166
+ + D ++ F+ + D +G D
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 259
Score = 33.8 bits (78), Expect = 0.016
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 65 GKTEPVVVIRVDKEKVMTTV-TPEKADGLKALQEAIDTIKAK 105
G PV V+ + ++T + T DG A+Q ++ +
Sbjct: 61 GTVVPVTVVGFREGNIVTQIKTEAT-DGYNAVQVGYRRVRDR 101
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 34.1 bits (78), Expect = 0.019
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 18 VVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIR-SINKLIRVGKTEPVVVIRVD 76
++ V V + +E ++ + ++R N++ +GKT P VI +D
Sbjct: 905 IIPVRVERFWHNDIICTT--NSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYID 962
Query: 77 KEK 79
Sbjct: 963 YAN 965
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 32.9 bits (76), Expect = 0.037
Identities = 16/69 (23%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSR----RRIRSINKLIRVGKTE 68
PEV + ++ +V+ GA+V LL +G++ +S++ + +R+ ++ ++ VG+
Sbjct: 665 PEVGERILGSVVKTTTFGAFVSLL--PGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKV 722
Query: 69 PVVVIRVDK 77
V + +D
Sbjct: 723 QVEIAEIDS 731
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 33.0 bits (74), Expect = 0.043
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 138 EAENAEVAADDDEDEEDFDNERDGDEGEDEEEGENED 174
A E D++E +ED D E D D G ++++GE+ +
Sbjct: 363 AALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAE 399
Score = 28.4 bits (62), Expect = 1.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 135 ERAEAENAEVAADDDEDEEDFDNERDGDEGEDEEEGENED 174
E E E + DEDE++ +++ G E +D E E +D
Sbjct: 363 AALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQD 402
Score = 27.6 bits (60), Expect = 2.2
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 134 MERAEAENAEVAADDDEDEEDFDNERDGDEGEDEEEGENED 174
A E ++ +++ED + + D +D+ E E
Sbjct: 361 TGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQ 401
Score = 27.2 bits (59), Expect = 3.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 130 LARQMERAEAENAEVAADDDEDEEDFDNERDGDEGEDEEEGENE 173
+E E+ E A +D+++EED D+ + D+GE EE ++
Sbjct: 361 TGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDF 404
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B*
1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B
3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E
1vou_E 1vow_E 1voy_E ...
Length = 211
Score = 31.7 bits (73), Expect = 0.068
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 65 GKTEPVVVIRVDKEKVMTTVTPEKADGLKALQEAIDTIKAK 105
+ PV V+ ++ T + DG +A+Q +
Sbjct: 18 DRAIPVTVVLAGPCPIVQRKTAQT-DGYEAVQIGYAPKAER 57
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial
ribosome, large ribosomal subunit, ribosomal R ribosome;
12.10A {Bos taurus}
Length = 211
Score = 31.7 bits (73), Expect = 0.069
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 5/53 (9%)
Query: 65 GKTEPVVVIRVDKEKVMTTVTPEKADGLKALQEAIDTIKAKI----EQLGGVF 113
G+ V +++V V+ + E K ++ + +
Sbjct: 19 GQKHVVTLLQVQDCHVLKYTSKEN-CNGKMATLSVGGKTVSRFRKATSILEFY 70
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E
2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E
2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Length = 206
Score = 31.7 bits (73), Expect = 0.075
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 65 GKTEPVVVIRVDKEKVMTTVTPEKADGLKALQEAIDTIKAK 105
+ PV VI V+ TPEK DG A+Q K
Sbjct: 18 DRAVPVTVILAGPCPVVQRRTPEK-DGYTAVQLGFLPQNPK 57
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer
RNA, 23S ribosomal subunit, ribosome recycling factor,
RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B
1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D
2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D
2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Length = 209
Score = 31.7 bits (73), Expect = 0.081
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 65 GKTEPVVVIRVDKEKVMTTVTPEKADGLKALQEAIDTIKAK 105
G + PV VI V+ +V DG +A+Q KA
Sbjct: 19 GVSIPVTVIEVEANRVTQVKDLAN-DGYRAIQVTTGAKKAN 58
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.15
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 11/31 (35%)
Query: 87 EKADGLKALQEAI-----DT-----IKAKIE 107
EK LK LQ ++ D+ IKA +E
Sbjct: 18 EKQA-LKKLQASLKLYADDSAPALAIKATME 47
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Length = 119
Score = 29.6 bits (66), Expect = 0.27
Identities = 12/94 (12%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 18 VVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSR-RRIRSINKLIRVGKTEPVVVIRVD 76
++ TV S+ + G V + + + L + R ++ ++VG+ +V +V
Sbjct: 24 LLTGTVSSLEDHGYLVDI-GVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVK 82
Query: 77 KEKVMTTVTPEKADGLKALQEA-----IDTIKAK 105
+ +++ ++ A+ ++ +
Sbjct: 83 GNGGVVSLSVGHSEVSTAIATEQQSWNLNNLSGP 116
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR
family, hydrolase; 2.35A {Escherichia coli} SCOP:
b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Length = 644
Score = 30.2 bits (69), Expect = 0.38
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 15/71 (21%)
Query: 22 TVISIAEMGAYVHLLEYNNIEGMILLSELSRRR-------------IRSINKLIRVGKTE 68
++ I+ G V L++ N I L R I+ + +V
Sbjct: 567 EIVDISRGGMRVRLVD-NGAIAFIPAPFLHAVRDELVCSQENGTVQIKG-ETVYKVTDVI 624
Query: 69 PVVVIRVDKEK 79
V + V E
Sbjct: 625 DVTIAEVRMET 635
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 29.7 bits (67), Expect = 0.40
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 118 APKVVTASDEAELARQMERAEAENAEVAADDDEDEEDFDNERDGDEGEDEEEGENED 174
P++ EAE+ E++ + E + D + + E E+ D
Sbjct: 173 PPRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTD 229
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 0.71
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 12/65 (18%)
Query: 103 KAKIEQLGGVFQVQMAPKVVTASDEAE-----LARQMERAEAENAEVAADDDEDEEDFDN 157
+ ++++L +V A + E + Q+E+ + N ++ F
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI-------ADKAFYQ 147
Query: 158 ERDGD 162
+ D D
Sbjct: 148 QPDAD 152
Score = 25.9 bits (56), Expect = 6.6
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 128 AELARQMERAEAENAEVAADDDED-----EEDFDNERDGDEGEDEEEGENED 174
EL + E E E A D E+ E + + + D+ + D
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA,
exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A
{Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Length = 179
Score = 28.8 bits (64), Expect = 0.72
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 12 YPEVEDVVMVTVISIAEMGAYVHLLEYNN--------IEGMILLSELSRRRIRSINKLIR 63
DVV+ V+ + A + + G++ +S + ++ I++ +
Sbjct: 54 EIVKGDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVG 113
Query: 64 VG 65
Sbjct: 114 YL 115
>1nvp_C Transcription initiation factor IIA beta chain; transcription
regulation, DNA, complex, transcription/DNA complex;
2.10A {Homo sapiens} SCOP: b.56.1.1
Length = 76
Score = 27.2 bits (60), Expect = 0.81
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 146 ADDDEDEEDFDNERDGDEGEDEEEGENED 174
A+D + EE+ N D E+ +E + +
Sbjct: 4 AEDGQVEEEPLNSEDDVSDEEGQELFDTE 32
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 28.7 bits (65), Expect = 0.95
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 56 RSINKLIRVGKTEPVVVIRVDKEKVMTTVTPEKAD 90
+ + +R V + R +E + VTPE +
Sbjct: 292 EDVYEAVRTQSQLAVQIRR-GRETLTLYVTPEVTE 325
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK
structural genomix research CO NYSGXRC, PSI-2, protein
structur initiative; 2.70A {Yersinia pestis}
Length = 294
Score = 28.3 bits (64), Expect = 1.2
Identities = 11/85 (12%), Positives = 30/85 (35%), Gaps = 8/85 (9%)
Query: 17 DVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVI-RV 75
D++++ + + +HL+E ++ +I+ ++ + L + P + + R
Sbjct: 42 DLLLIPDEPGEKYQSLIHLVETRRVDALIVAH--TQPEDFRLQYLQKQNF--PFLALGRS 97
Query: 76 DKEKVMTTVTPEKADGLKALQEAID 100
K D A+
Sbjct: 98 HLPKPYAWFD---FDNHAGASLAVK 119
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 28.5 bits (64), Expect = 1.3
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 126 DEAELARQMERAEAENAEVAADDDEDEEDFDNERDGDEGEDEEEGENED 174
DE + +R++ + + A D + D D G+ E+
Sbjct: 419 DEMDTSREIVQQLIDEYHAATRPDYISWGTQEQVDVDGGQKLISEEDLL 467
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 26.9 bits (60), Expect = 1.7
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 56 RSINKLIRVGKTEPVVVIRVDKEKVMTTVTPEKADG 91
+ + +R V + R +E + VTPE +G
Sbjct: 71 EDVYEAVRTQSQLAVQIRR-GRETLTLYVTPEVTEG 105
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project,
structural genomics, EIF-2A homolog, PSI, protein
structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Length = 102
Score = 27.0 bits (59), Expect = 1.8
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 23 VISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIR--VGKTEPVVVIRVDK 77
++ + V LL Y E ++L + R ++++L VG+ V+R D
Sbjct: 39 IVYFKDGIFKVRLLGYEGHECILL--DYLNYRQDTLDRLKERLVGRVIKTRVVRADG 93
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 27.2 bits (59), Expect = 2.2
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 123 TASDEAELARQMERAEAENAEVAADDDEDEEDFDNERDGDEGEDEEEGENED 174
D+ E + E E D+DEDE++ +++ D D+ ++EEE E D
Sbjct: 24 AEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTD 75
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain,
transcription, RNA binding protein; 2.27A {Pseudomonas
aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5
c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 27.6 bits (62), Expect = 2.3
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 43 GMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEK 79
G++ +S LS + ++ ++++ G V V+ VD +
Sbjct: 680 GLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPR 716
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 27.2 bits (61), Expect = 2.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 60 KLIRVGKTEPVVVIRVDKEKVMTTVTPEKADGLKALQE 97
+I+ T +VV R E +M TV PE+ D L+
Sbjct: 294 DVIKRESTLNMVVRR-GNEDIMITVIPEEIDPLEHHHH 330
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A
{Ambystoma tigrinum}
Length = 392
Score = 27.0 bits (59), Expect = 3.4
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 140 ENAEVAADDDEDEEDFDNERDGDEGEDEEEGENED 174
+ + +++D E+F ++ E +DEEE E+ +
Sbjct: 354 SDDKPRSEEDIIIEEFARQKLDGEKDDEEEKEDVE 388
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 27.0 bits (59), Expect = 3.4
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 141 NAEVAADDDEDEEDFDNERDGDEGEDEEEGENED 174
A+ +D+E E + D ++ + +
Sbjct: 218 EAQRDLEDEEGESGLSADGDSEDDDGSLGEVDLP 251
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 27.1 bits (61), Expect = 3.8
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 125 SDEAELARQMER--AEAENAEVAADDDEDEE 153
S EA ++ R A+ + ++DE
Sbjct: 17 SQEAAELIELTREIADKVLDPIVDRHEKDET 47
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 26.2 bits (57), Expect = 4.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 147 DDDEDEEDFDNERDGDEGEDEEEGENED 174
+D D E F +E +E ++GE D
Sbjct: 15 FEDFDVEHFSDEETYEEKPQFKDGETTD 42
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA
splicing, translation; NMR {Canis lupus familiaris}
Length = 171
Score = 26.3 bits (57), Expect = 4.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 148 DDEDEEDFDNERDGDEGEDEEEGENED 174
D EDE+ D + + + E E+G+ D
Sbjct: 145 DPEDEDSDDYDGEEYDVEAHEQGQEND 171
Score = 25.6 bits (55), Expect = 9.2
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 147 DDDEDEEDFDNERDGDEGEDEEEGE 171
+DED +D+D E E ++ +
Sbjct: 146 PEDEDSDDYDGEEYDVEAHEQGQEN 170
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich;
2.49A {Homo sapiens} SCOP: b.15.1.2
Length = 125
Score = 26.0 bits (57), Expect = 4.7
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 154 DFDNERDGDEGEDEEEGENED 174
DF+N +D ++ DE+ +
Sbjct: 102 DFNNWKDWEDDSDEDMSNFDR 122
>2nnc_A Sulfur covalently-binding protein; sulfur binding protein, SOXY,
beta sandwich, green sulfur BA ligand binding protein;
2.14A {Chlorobium limicola} PDB: 2nnf_A
Length = 124
Score = 25.9 bits (57), Expect = 4.8
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 18 VVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVI 73
V VTV + + + N M+ ++ R ++ +R+ KTE +VV+
Sbjct: 46 FVPVTVATSIPGATNISIFTPANFSPMVASFDVLPRMKPEVSLRMRMAKTENLVVV 101
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 26.4 bits (59), Expect = 5.7
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 142 AEVAADDDEDEEDFDNERDGDEGEDEEEG 170
+ A +E E+ D EG
Sbjct: 342 ERLDASLEEPEDVVDEAVAITSDAPPAEG 370
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA;
HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP:
b.56.1.1 PDB: 1ytf_C*
Length = 79
Score = 25.0 bits (54), Expect = 6.5
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 145 AADDDEDEEDFDNERDGDEGEDEEEGENED 174
D DE + D+ D + EE ++
Sbjct: 5 LLDTDEVGSELDDSDDDYLISEGEEDGPDE 34
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 26.0 bits (58), Expect = 6.6
Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 29 MGAYVHL---LEYNNIEGMILLSELSRRRIRSIN----KLIRV-GKTEPVVVIRVDKEKV 80
+G V++ L+ I++S + + + + + + G EPV+ ++ +
Sbjct: 158 IGPSVNIAARLQEATAPNSIMVSAMVAQYVPDEEIIKREFLELKGIDEPVMTCVINPNML 217
>3quf_A Extracellular solute-binding protein, family 1; structural
genomics, PSI-biology, midwest center for structu
genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum
subsp}
Length = 414
Score = 26.3 bits (58), Expect = 6.6
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 78 EKVMT-TVTPEKADGLKALQEAIDTIKA 104
+K++ ++ + A KAL T+K
Sbjct: 388 QKIVQGQISAKDA--AKALDAKWATLKG 413
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.4 bits (58), Expect = 7.6
Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 25/84 (29%)
Query: 89 ADGLKALQEAIDTI---KAKIEQLGGVFQVQMAPKVVTASDEAELARQME-----RAEAE 140
A ++++ ++TI KA+I + + +A +
Sbjct: 1107 ATSVESVDIGVETILSGKARI--------------CIVGGYDDFQEEGSFEFGNMKATSN 1152
Query: 141 NAEVAADDDEDEE---DFDNERDG 161
E E R+G
Sbjct: 1153 TLEEFEHGRTPAEMSRPATTTRNG 1176
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 25.9 bits (58), Expect = 7.9
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 125 SDEAELARQMER--AEAENAEVAADDDEDEEDFDNE 158
+D + ++ E + A + D +D E
Sbjct: 6 TDIQQDFLKLAHDFGEKKLAPTVTERDHKGI-YDKE 40
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn
helix, molybdate, OB fold, transcription; 1.75A
{Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB:
1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Length = 265
Score = 25.7 bits (56), Expect = 8.3
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 45 ILLSELSRRRIRSINKL------IRVGKTEPVVVIRVDKEKVMT-TVTPEKADGLKALQE 97
+ +++ + N+L I G + V++ + + + TV +A L+ Q
Sbjct: 190 VGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQN 249
Query: 98 AIDTIKA 104
A
Sbjct: 250 VTAYFNA 256
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 25.6 bits (56), Expect = 8.4
Identities = 9/48 (18%), Positives = 14/48 (29%)
Query: 103 KAKIEQLGGVFQVQMAPKVVTASDEAELARQMERAEAENAEVAADDDE 150
K K+E G V K A+ + E A+ +
Sbjct: 207 KEKLEYAGCSLIVLPGRKKWVKPSVAKNLARAEEYFAKKRGGETASEP 254
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.131 0.344
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,806,933
Number of extensions: 179507
Number of successful extensions: 772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 696
Number of HSP's successfully gapped: 147
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.1 bits)