RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18072
(174 letters)
>d1q8ka2 d.58.51.1 (A:186-302) eIF-2-alpha, C-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 77.9 bits (192), Expect = 8e-20
Identities = 43/68 (63%), Positives = 49/68 (72%)
Query: 80 VMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMAPKVVTASDEAELARQMERAEA 139
VMTT T E+ +GL L +A+ IK KIE+ GVF VQM PKVVT +DE ELARQMER E
Sbjct: 50 VMTTTTLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQMERLER 109
Query: 140 ENAEVAAD 147
ENAEV D
Sbjct: 110 ENAEVDGD 117
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha,
eIF2alpha, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 86
Score = 72.3 bits (177), Expect = 5e-18
Identities = 67/77 (87%), Positives = 70/77 (90%)
Query: 3 LSCRFYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLI 62
LSCRFY K+PEVEDVVMV V SIAEMGAYV LLEYNNIEGMILLSELSRRRIRSINKLI
Sbjct: 1 LSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLI 60
Query: 63 RVGKTEPVVVIRVDKEK 79
R+G+ E VVVIRVDKEK
Sbjct: 61 RIGRNECVVVIRVDKEK 77
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha,
eIF2alpha, N-terminal domain {Sulfolobus solfataricus
[TaxId: 2287]}
Length = 84
Score = 57.3 bits (138), Expect = 3e-12
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 7 FYAEKYPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGK 66
+ K P ++++ TV + + G+YV L EY ++ + SE+S + +++I +++ +
Sbjct: 3 YSRSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENR 62
Query: 67 TEPVVVIRVDKEK 79
V VIRVD+ K
Sbjct: 63 KVIVKVIRVDRRK 75
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex
RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId:
56636]}
Length = 88
Score = 42.6 bits (100), Expect = 1e-06
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 12 YPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRS----INKLIRVGKT 67
P+ DVV+ + S+ M +V + + ++ + + R + L++VG
Sbjct: 4 VPQAGDVVIGLIQSVGIMNWFVDI--NSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDY 61
Query: 68 EPVVVIRVDKEK 79
V+ DK +
Sbjct: 62 IKAKVVAFDKTR 73
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide
phosphorylase, PNPase {Escherichia coli [TaxId: 562]}
Length = 76
Score = 40.9 bits (96), Expect = 4e-06
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVV 72
EV V V I + GA+V EG++ +S+++ +R+ + +++G+ PV V
Sbjct: 3 IEVGRVYTGKVTRIVDFGAFVA--IGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 60
Query: 73 IRVDKEK 79
+ VD++
Sbjct: 61 LEVDRQG 67
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex
RNA-binding protein 1, ECR1 {Sulfolobus solfataricus
[TaxId: 2287]}
Length = 87
Score = 38.1 bits (88), Expect = 5e-05
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 12 YPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVV 71
YP++ D+V+ V + G V + + + S L R I L R V
Sbjct: 4 YPKINDIVIGLVEDVEIYGWVVDI--KAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYV 61
Query: 72 ---VIRVDKEK 79
+ D+
Sbjct: 62 IARIENFDRSI 72
>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of
polyribonucleotide phosphorylase, PNPase {Streptomyces
antibioticus [TaxId: 1890]}
Length = 62
Score = 37.4 bits (87), Expect = 6e-05
Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 22 TVISIAEMGAYVHLLEYNNIEGMILLSELSR----RRIRSINKLIRVGKTEPVVVIRVDK 77
+V+ GA+V L +G++ +S++ + +R+ ++ ++ VG+ V + +D
Sbjct: 2 SVVKTTTFGAFVSL--LPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS 59
Query: 78 EK 79
Sbjct: 60 RG 61
>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing
protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 35.7 bits (82), Expect = 4e-04
Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 12/77 (15%)
Query: 12 YPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELS----------RRRIRSINKL 61
EV D+V+ + + + V + ++ ++LLS ++ ++
Sbjct: 5 IGEVGDIVVGRITEVQQKRWKVETN--SRLDSVLLLSSMNLPGGELRRRSAEDELAMRGF 62
Query: 62 IRVGKTEPVVVIRVDKE 78
++ G V V +
Sbjct: 63 LQEGDLISAEVQAVFSD 79
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex
RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 83
Score = 35.4 bits (81), Expect = 4e-04
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 12 YPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRR-RIRSINKLIRVGKTEPV 70
P V DVV+ + +A G V Y+ + + +SE + N+++ +G
Sbjct: 2 TPSVGDVVIGIIREVAANGWAVD--IYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIA 59
Query: 71 VVIRVDKEK 79
V+ +D +
Sbjct: 60 KVLNIDPKM 68
>d2qn6b1 d.58.51.1 (B:176-264) eIF-2-alpha, C-terminal domain
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 89
Score = 34.8 bits (80), Expect = 7e-04
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 80 VMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQV 115
+ V + +AL + I + ++ V
Sbjct: 53 RVDVVGTNPKEASEALNQIISNLIKIGKEENVDISV 88
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase
II subunit RBP7 (RpoE) {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 106
Score = 34.2 bits (78), Expect = 0.002
Identities = 11/78 (14%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEP--- 69
PE+ +++ V+ + E G++V ++G+I +S++ + K + E
Sbjct: 1 PEMYELIEGEVVDVVEFGSFV---RLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKV 57
Query: 70 --------VVVIRVDKEK 79
++ + +
Sbjct: 58 LEIGDYVRARIVAISLKA 75
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 94
Score = 33.3 bits (76), Expect = 0.003
Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 14 EVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVI 73
+ V+ V ++ GA+V + + +G++ +S LS + ++ ++++ G V V+
Sbjct: 17 KPGMVLEGVVTNVTNFGAFVDI--GVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVM 74
Query: 74 RVDKEK 79
VD +
Sbjct: 75 EVDIPR 80
>d1luza_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha
{Vaccinia virus [TaxId: 10245]}
Length = 85
Score = 30.9 bits (70), Expect = 0.017
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 32 YVHLLEYNNIEGMILLSELSRRRIRSINKLIR--VGKTEPVVVIRVDKEK 79
Y++L +Y + E ++ E + + + VGKT V VIRVD K
Sbjct: 24 YIYLFDYPHFEAILA--ESVKMHMDRYVEYRDKLVGKTVKVKVIRVDYTK 71
>d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3
(RRP40) {Saccharomyces cerevisiae [TaxId: 4932]}
Length = 90
Score = 29.8 bits (67), Expect = 0.043
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 6/89 (6%)
Query: 12 YPEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVV 71
P V D V+ +I V L N + L + ++VG
Sbjct: 4 IPSVNDFVIGVIIGTFSDSYKVSL--QNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYAR 61
Query: 72 VIRVDKEKV--MTTVTPE--KADGLKALQ 96
V +KE + + G L+
Sbjct: 62 VCTAEKELEAEIECFDSTTGRDAGFGILE 90
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia
coli [TaxId: 562]}
Length = 87
Score = 29.4 bits (66), Expect = 0.067
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 13/70 (18%)
Query: 22 TVISIAEMGAYVHLLEYNNIEGMILLSELSRRR------------IRSINKLIRVGKTEP 69
++ I+ G V L++ N I L R + +V
Sbjct: 10 EIVDISRGGMRVRLVD-NGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVID 68
Query: 70 VVVIRVDKEK 79
V + V E
Sbjct: 69 VTIAEVRMET 78
>d1jjga_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Myxoma
virus, m156r [TaxId: 10273]}
Length = 102
Score = 29.5 bits (66), Expect = 0.078
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 32 YVHLLEYNNIEGMILLSELSRRRIRSINKLIR--VGKTEPVVVIRVDK 77
V LL Y E ++L + R ++++L VG+ V+R D
Sbjct: 48 KVRLLGYEGHECILL--DYLNYRQDTLDRLKERLVGRVIKTRVVRADG 93
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3
(RRP40) {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 28.7 bits (64), Expect = 0.14
Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 11 KY-PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEP 69
+Y P D V+ V + + V + + + R+ + +VG
Sbjct: 1 RYVPVKGDHVIGIVTAKSGDIFKVDV--GGSEPASLSYLSFEGATKRNRPNV-QVGDLIY 57
Query: 70 VVVIRVDKEK--VMTTVTPE-KADGLKALQE 97
+ +K+ M + +A+G+ + +
Sbjct: 58 GQFVVANKDMEPEMVCIDSCGRANGMGVIGQ 88
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max)
[TaxId: 3847]}
Length = 304
Score = 26.2 bits (57), Expect = 2.2
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 3 LSCRFYAEKYPEVEDVVMVTV 23
L+ FY E P + +V +
Sbjct: 2 LTPTFYRETCPNLFPIVFGVI 22
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 25.5 bits (56), Expect = 2.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 147 DDDEDEEDFDNERDGDEGEDEEEGENED 174
+D+ D +DFD+ + + +D E E E
Sbjct: 5 EDNFDGDDFDDVEEDEGLDDLENAEEEG 32
>d1ku2a2 a.177.1.1 (A:93-272) Sigma factor SigA {Thermus aquaticus
[TaxId: 271]}
Length = 180
Score = 25.9 bits (56), Expect = 2.3
Identities = 8/52 (15%), Positives = 17/52 (32%)
Query: 123 TASDEAELARQMERAEAENAEVAADDDEDEEDFDNERDGDEGEDEEEGENED 174
T +E +LAR++E +++ D+E +
Sbjct: 18 TLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPG 69
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare),
peroxidase 1 [TaxId: 4513]}
Length = 309
Score = 25.8 bits (56), Expect = 2.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 3 LSCRFYAEKYPEVEDVVMVTV 23
LS FY + P E +V V
Sbjct: 9 LSFDFYWQTCPRAESIVREFV 29
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress
(Arabidopsis thaliana), peroxidase N [TaxId: 3702]}
Length = 300
Score = 25.8 bits (56), Expect = 3.4
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 3 LSCRFYAEKYPEVEDVV 19
LS YA+ P + +V
Sbjct: 2 LSPDIYAKSCPNLVQIV 18
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea)
[TaxId: 3818]}
Length = 294
Score = 25.5 bits (55), Expect = 3.5
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 3 LSCRFYAEKYPEVEDVV 19
LS FYA K P +
Sbjct: 2 LSSNFYATKCPNALSTI 18
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 205
Score = 25.4 bits (55), Expect = 3.9
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 65 GKTEPVVVIRVDKEKVMTTVTPEKADGLKALQEAIDTIKAKIEQ 108
+ PV V+ ++ T + DG +A+Q +
Sbjct: 18 DRAIPVTVVLAGPCPIVQRKTAQT-DGYEAVQIGYAPKAERKVN 60
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia
rusticana) [TaxId: 3704]}
Length = 307
Score = 25.1 bits (54), Expect = 5.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 1 MPLSCRFYAEKYPEVEDVV 19
M L+ FY P V ++V
Sbjct: 1 MQLTPTFYDNSCPNVSNIV 19
>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 24.1 bits (52), Expect = 7.0
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 12/51 (23%)
Query: 61 LIRVGKTEPVVVIRVDKEKVMTTVTPEKADGLKALQEAIDTIKAKIEQLGG 111
+R TE +V + + A+ ++ + + QL G
Sbjct: 60 FVRPSGTEDIVRVYAE------------ANSQESADRLAYEVSLLVFQLAG 98
>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 23.8 bits (51), Expect = 7.9
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 55 IRSINKLIRVGKTEPVVVIRVDKEKVMTTVTPE 87
+ + +R V + R +E + VTPE
Sbjct: 66 AEDVYEAVRTQSQLAVQIRR-GRETLTLYVTPE 97
>d1ni9a_ e.7.1.2 (A:) Glycerol metabolism protein GlpX {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 24.4 bits (53), Expect = 8.1
Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 3/110 (2%)
Query: 44 MILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEKVMTTVTPE-KADGLKALQEAID-- 100
+ ++ L++ R ++ ++ + D + T P+ + D L + A +
Sbjct: 158 ELTVTILAKPRHDAVIAEMQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGV 217
Query: 101 TIKAKIEQLGGVFQVQMAPKVVTASDEAELARQMERAEAENAEVAADDDE 150
A I L G ++ + D E R E+ A + + +
Sbjct: 218 VSAAVIRALDGDMNGRLLARHDVKGDNEENRRIGEQELARCKAMGIEAGK 267
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 23.7 bits (51), Expect = 9.3
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 13 PEVEDVVMVTVISIAEMGAYVHLLEYNNIEGMILLSELSRRR-IRSINK 60
P+V +V V SI A VH+L ++ R+ +R+ K
Sbjct: 5 PDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEK 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.131 0.344
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 642,219
Number of extensions: 29653
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 51
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.3 bits)