BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18073
(639 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|B Chain B, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|E Chain E, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
Length = 353
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 12/169 (7%)
Query: 470 STRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLY 529
S +P V T LT+SFGWE+ D++ QHD+QELCRVL D +E + KG+ G I L+
Sbjct: 63 SDKP-VGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEG----TIPKLF 117
Query: 530 QGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQ 589
+GKM Y++C E R + + DI L ++ +I E+ +V E LDG N+
Sbjct: 118 RGKMVSYIQCKEVDYRSDRREDYYDIQLSIK------GKKNIFESFVDYVAVEQLDGDNK 171
Query: 590 YFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
Y + G + +A KG+KF P +L L LMRF +D T IK+ND+ E
Sbjct: 172 YDAGEHGLQ-EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFE 219
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDL 61
TCY+NSL+Q LF T + R AVY E D + + S+ LQ++F LQ S +P V T L
Sbjct: 15 TCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSK-SVPLALQRVFYELQHSDKP-VGTKKL 72
Query: 62 TRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTG 100
T+SFGWE+ D++ QHD+QELCRVL D +E + KG+ G
Sbjct: 73 TKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEG 111
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 12/169 (7%)
Query: 470 STRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLY 529
S +P V T LT+SFGWE+ D++ QHD+QELCRVL D +E + KG+ G I L+
Sbjct: 232 SDKP-VGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEG----TIPKLF 286
Query: 530 QGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQ 589
+GKM Y++C E R + + DI L ++ +I E+ +V E LDG N+
Sbjct: 287 RGKMVSYIQCKEVDYRSDRREDYYDIQLSIK------GKKNIFESFVDYVAVEQLDGDNK 340
Query: 590 YFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
Y + G + +A KG+KF P +L L LMRF +D T IK+ND+ E
Sbjct: 341 YDAGEHGLQ-EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFE 388
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDL 61
TCY+NSL+Q LF T + R AVY E D + + S+ LQ++F LQ S +P V T L
Sbjct: 184 TCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSK-SVPLALQRVFYELQHSDKP-VGTKKL 241
Query: 62 TRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTG 100
T+SFGWE+ D++ QHD+QELCRVL D +E + KG+ G
Sbjct: 242 TKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEG 280
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp)
pdb|1NB8|B Chain B, Structure Of The Catalytic Domain Of Usp7 (Hausp)
Length = 353
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 12/169 (7%)
Query: 470 STRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLY 529
S +P V T LT+SFGWE+ D++ QHD+QELCRVL D +E + KG+ G I L+
Sbjct: 63 SDKP-VGTKKLTKSFGWETLDSFXQHDVQELCRVLLDNVENKXKGTCVEG----TIPKLF 117
Query: 530 QGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQ 589
+GK Y++C E R + + DI L ++ +I E+ +V E LDG N+
Sbjct: 118 RGKXVSYIQCKEVDYRSDRREDYYDIQLSIK------GKKNIFESFVDYVAVEQLDGDNK 171
Query: 590 YFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
Y + G + +A KG+KF P +L L L RF +D T IK+ND+ E
Sbjct: 172 YDAGEHGLQ-EAEKGVKFLTLPPVLHLQLXRFXYDPQTDQNIKINDRFE 219
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 65/99 (65%), Gaps = 2/99 (2%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDL 61
TCY NSL+Q LF T + R AVY E D + + S+ LQ++F LQ S +P V T L
Sbjct: 15 TCYXNSLLQTLFFTNQLRKAVYXXPTEGDDSSK-SVPLALQRVFYELQHSDKP-VGTKKL 72
Query: 62 TRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTG 100
T+SFGWE+ D++ QHD+QELCRVL D +E + KG+ G
Sbjct: 73 TKSFGWETLDSFXQHDVQELCRVLLDNVENKXKGTCVEG 111
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 109/269 (40%), Gaps = 43/269 (15%)
Query: 223 CFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD 282
C D + +S DNTIK W E I+ HT + + I +
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ----YDERVIITGSSDS 193
Query: 283 QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPD 342
++W+ E + + +++ H++FN ++ +C+ DRSI ++D ++ D
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWD-----MASPTD 245
Query: 343 EYLRETKTSIHRIPRNI----DPSLHPFEGPR----------EYVRALNATKLERVFAKP 388
LR HR N+ D + G R E+VR LN K R A
Sbjct: 246 ITLRRVLVG-HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK--RGIACL 302
Query: 389 FVGPREYVRAL--NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVK 446
R V N +L + + L+GH++ + C+ + I+SGAYDG++K
Sbjct: 303 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR---IVSGAYDGKIK 359
Query: 447 VWNLTSQ---------SCVQTYQAHDGHV 466
VW+L + C++T H G V
Sbjct: 360 VWDLVAALDPRAPAGTLCLRTLVEHSGRV 388
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCF 224
FV L+GHK GI+CL ++ +L ++SG+ D +++W++ +C++ + H+ VR C
Sbjct: 288 FVRTLNGHKRGIACL-QYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CI 342
Query: 225 LPDGSQFLSVGIDNTIKTW 243
D + +S D IK W
Sbjct: 343 RFDNKRIVSGAYDGKIKVW 361
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ------ 206
N +L + + L+GH++ + C+ + I+SGAYDG++KVW+L +
Sbjct: 316 NTIRLWDIECGACLRVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWDLVAALDPRAP 372
Query: 207 ---SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW 243
C++T H G V + F D Q +S D+TI W
Sbjct: 373 AGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 410
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG-IDNTIKTWSSEL 247
I+S + D +KVWN ++ V+T +GH R + L + + G DNTI+ W E
Sbjct: 269 IVSASGDRTIKVWNTSTCEFVRTL---NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 325
Query: 248 SESDHIVPLH 257
++ H
Sbjct: 326 GACLRVLEGH 335
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 64/164 (39%), Gaps = 11/164 (6%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L GH + CL II+G+ D V+VW++ + + T H V + F +
Sbjct: 169 LTGHTGSVLCLQYDE---RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NN 223
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQ-CQLW 287
++ D +I W +++ I I + GD+ ++W
Sbjct: 224 GMMVTCSKDRSIAVW--DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 281
Query: 288 EHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
E +R + + + +Q+ ++ S +SD +I L+D
Sbjct: 282 NTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWD 322
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 126/300 (42%), Gaps = 22/300 (7%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L GH+ ++ + HP S ++S + D +KVW+ + +T + H V+D+ F G
Sbjct: 104 LSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWE 288
S D TIK W + E I +H + A+ ++WE
Sbjct: 163 KLLASCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 289 HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET 348
+ ++ F+ + + + V+ N D ++ASC++D+++ ++ V ++ LRE
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVW----VVATKECKAELREH 275
Query: 349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV--GPREYVRALNATKLER 406
+ + I S P A + + PF+ G R+ K+
Sbjct: 276 RHVVECI------SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD-----KTIKMWD 324
Query: 407 VFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
V + L GH + + + H + I+S A D ++VW+ ++ C++T AH+ V
Sbjct: 325 VSTGMCLMTLVGHDNWVRGVLFH-SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 383
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 43/218 (19%)
Query: 285 QLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEY 344
++W++E + R + DS+ + F+ K +LASC++D +I L+D + R +
Sbjct: 133 KVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMHGH 191
Query: 345 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF-AKPFVGPREYVRAL---- 399
+S+ +P N D H R+ + + +++ + K F G RE+VR +
Sbjct: 192 DHNV-SSVSIMP-NGD---HIVSASRD--KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 400 -----------NATKLERVFAKPFVANLDGHKDGISCLAKHP--------------TKLS 434
++ V K A L H+ + C++ P TK S
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 304
Query: 435 T-----IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 467
++SG+ D +K+W++++ C+ T HD VR
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 20/186 (10%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFL 225
+ + GH +S ++ P I+S + D +K+W + + CV+T+ H VR V
Sbjct: 185 IRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 226 PDGSQFLSVGIDNTIKTW-------SSELSESDHIVPL--------HTXXXXXXXXXXXH 270
DG+ S D T++ W +EL E H+V ++
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 303
Query: 271 QRKSKIFATCGDQ---CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSI 327
K F G + ++W+ + + + + V F+ K IL SCA D+++
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTL 362
Query: 328 ILYDTR 333
++D +
Sbjct: 363 RVWDYK 368
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW 243
I+S A D ++VW+ ++ C++T AH+ V + F ++ +D T+K W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 3/129 (2%)
Query: 346 RETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLE 405
+E TS + + DP P +Y + + + + RV P K+
Sbjct: 76 KEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 135
Query: 406 RVFAKPFVANLDGHKDGISCLA-KHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG 464
F L GH D + ++ H KL + S + D +K+W+ C++T HD
Sbjct: 136 DYETGDFERTLKGHTDSVQDISFDHSGKL--LASCSADMTIKLWDFQGFECIRTMHGHDH 193
Query: 465 HVRDTSTRP 473
+V S P
Sbjct: 194 NVSSVSIMP 202
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|C Chain C, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|E Chain E, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|G Chain G, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
Length = 355
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 525 INNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETL 584
I +L+ G+++ +KC CG + + F D+ LP+ G + + + F + E L
Sbjct: 162 IVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEEL 221
Query: 585 DGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHR 630
+ N CD+C +K + K L FP +L LHL RF ++ +
Sbjct: 222 ESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKK 267
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|E Chain E, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 370
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 525 INNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETL 584
I +L+ G+++ +KC CG + + F D+ LP+ G + + + F + E L
Sbjct: 175 IVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEEL 234
Query: 585 DGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHR 630
+ N CD+C +K + K L FP +L LHL RF ++ +
Sbjct: 235 ESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKK 280
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|C Chain C, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 373
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 525 INNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETL 584
I +L+ G+++ +KC CG + + F D+ LP+ G + + + F + E L
Sbjct: 181 IVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEEL 240
Query: 585 DGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHR 630
+ N CD+C +K + K L FP +L LHL RF ++ +
Sbjct: 241 ESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKK 286
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 170 DGHKDGISCLAKHPTKLS-TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
+GH+D +SC+ P L TI+S ++D VKVWNL++ T H G+V V PDG
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
S S G D + W +L+E + L
Sbjct: 574 SLCASGGKDGVVLLW--DLAEGKKLYSLEA 601
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 417 DGHKDGISCLAKHPTKLS-TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
+GH+D +SC+ P L TI+S ++D VKVWNL++ T H G+V + P
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP 571
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 11/170 (6%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE 249
+SG++DGE+++W+L + + + H V V F D Q +S D TIK W++ L E
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGE 504
Query: 250 SDHIVP----LHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSL 305
+ + H + + + A+ ++W + + + +
Sbjct: 505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYV 564
Query: 306 HHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRI 355
V +P D + AS D ++L+D L+ Y E + IH +
Sbjct: 565 STVAVSP-DGSLCASGGKDGVVLLWD-----LAEGKKLYSLEANSVIHAL 608
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS-----CVQTYQAHDGHVRD 221
+ H D ++ +A I+S + D + +W LT + H V D
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 222 VCFLPDGSQFLSVGIDNTIKTW 243
V DG LS D ++ W
Sbjct: 436 VVLSSDGQFALSGSWDGELRLW 457
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 134/330 (40%), Gaps = 71/330 (21%)
Query: 169 LDGHKDG-ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV-----RDV 222
L GH D I+CL + I+SG+ D +KVW+ + C++T H G V RD
Sbjct: 114 LKGHDDHVITCLQFCGNR---IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD- 169
Query: 223 CFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD 282
+ +S D T+K W++E E H + HT H + ++ + D
Sbjct: 170 ------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM-----HLHEKRVVSGSRD 218
Query: 283 Q-CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNP 341
++W+ E + + +V ++ VQ+ D + S A D + ++D
Sbjct: 219 ATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDP--------- 266
Query: 342 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA 401
ET+T +H + + + RV++ F G +L+
Sbjct: 267 -----ETETCLHTLQGHTN----------------------RVYSLQFDGIHVVSGSLDT 299
Query: 402 T-KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ 460
+ ++ V + L GH+ S + K + ++SG D VK+W++ + C+QT Q
Sbjct: 300 SIRVWDVETGNCIHTLTGHQ---SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356
Query: 461 AHDGHVRDTSTRPAVETTDLTRSFGWESSD 490
+ H + AV ++F SSD
Sbjct: 357 GPNKH------QSAVTCLQFNKNFVITSSD 380
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 12/180 (6%)
Query: 153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY 212
N K+ + L GH G+ + + IISG+ D +KVWN + C+ T
Sbjct: 139 NTLKVWSAVTGKCLRTLVGHTGGV---WSSQMRDNIIISGSTDRTLKVWNAETGECIHTL 195
Query: 213 QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQR 272
H VR C + +S D T++ W E + H++ H +
Sbjct: 196 YGHTSTVR--CMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV----AAVRCVQYDG 249
Query: 273 KSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDT 332
+ + ++W+ E + + + ++ +QF+ I H+++ + D SI ++D
Sbjct: 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSG-SLDTSIRVWDV 306
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 123 ETKTSIHRIPRNIDPSLH-PFEGPREYVRALNAT-KLERVFAKPFVANLDGHKDGISCLA 180
ET+T +H + + + F+G +L+ + ++ V + L GH+ S +
Sbjct: 267 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ---SLTS 323
Query: 181 KHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF-LSVGIDNT 239
K + ++SG D VK+W++ + C+QT Q + H V L F ++ D T
Sbjct: 324 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT 383
Query: 240 IKTWSSELSE 249
+K W + E
Sbjct: 384 VKLWDLKTGE 393
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ A +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 34 FSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 92
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 153 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 206
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 207 GKYILAATL-DNTLKLWD 223
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 115/321 (35%), Gaps = 47/321 (14%)
Query: 161 FAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG 217
F KP A L GH +S + P S A D +K+W +T H
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSA-DKLIKIWGAYDGKFEKTISGHKL 69
Query: 218 HVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIF 277
+ DV + D + +S D T+K W ++S + L Q +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 278 ATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVL 337
+ + ++W+ + + ++ + D + V FN D ++ S + D ++DT
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT----- 181
Query: 338 SRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVR 397
+ + + + +P P +V+ F +Y+
Sbjct: 182 ---------ASGQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYIL 211
Query: 398 AL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTS 452
A N KL + GHK+ C+ + T I+SG+ D V +WNL +
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 453 QSCVQTYQAHDGHVRDTSTRP 473
+ VQ Q H V T+ P
Sbjct: 272 KEIVQKLQGHTDVVISTACHP 292
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 295 NIIASAALENDKTIKLWKSD 314
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 396
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 505 FDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGS 564
F A E ++ K + +I L+QG+ + V+CL C + + F+ + LP+ +
Sbjct: 190 FKAAEHAWQKHKQLNE--SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPL----A 243
Query: 565 SVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFD 624
S + + + +R F + E L N+++C C + D+ K ++ + P +L +HL RF +D
Sbjct: 244 STSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYD 303
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDI------AEETSITYQLQKLFVNLQTSTRPA 55
TCY+NS++Q L P + + Y++DI + + + + L T
Sbjct: 71 TCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY 130
Query: 56 VETTDLTRSFGW--ESSDAWQQHDIQELCRVLFDAL 89
+ D + G + + Q D QEL L D L
Sbjct: 131 ISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGL 166
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 53 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 111
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 112 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 171
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 172 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 225
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 226 GKYILAATL-DNTLKLWD 242
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 120/329 (36%), Gaps = 47/329 (14%)
Query: 153 NATKLERVFAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV 209
+AT+ + KP A L GH +S + P + S + D +K+W
Sbjct: 22 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFE 80
Query: 210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXX 269
+T H + DV + D + +S D T+K W ++S + L
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFN 138
Query: 270 HQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL 329
Q + + + ++W+ + + ++ + D + V FN D ++ S + D +
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 197
Query: 330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF 389
+DT + + + + +P P +V+ F
Sbjct: 198 WDT--------------ASGQCLKTLIDDDNP-------PVSFVK--------------F 222
Query: 390 VGPREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGE 444
+Y+ A N KL + GHK+ C+ + T I+SG+ D
Sbjct: 223 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 282
Query: 445 VKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
V +WNL ++ VQ Q H V T+ P
Sbjct: 283 VYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 314 NIIASAALENDKTIKLWKSD 333
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 48 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 106
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 107 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 166
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 167 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 220
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 221 GKYILAATL-DNTLKLWD 237
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 112/310 (36%), Gaps = 44/310 (14%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L GH +S + P + S + D +K+W +T H + DV + D
Sbjct: 36 LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWE 288
+ +S D T+K W ++S + L Q + + + ++W+
Sbjct: 95 NLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 289 HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET 348
+ + ++ + D + V FN D ++ S + D ++DT +
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT--------------AS 197
Query: 349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL---NATKLE 405
+ + + +P P +V+ F +Y+ A N KL
Sbjct: 198 GQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYILAATLDNTLKLW 236
Query: 406 RVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD 463
+ GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 296
Query: 464 GHVRDTSTRP 473
V T+ P
Sbjct: 297 DVVISTACHP 306
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 369 PREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAK---PFVANLDGHKDGISC 425
P ++ A + V + F E++ + +A KL +++ F + GHK GIS
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 87
Query: 426 LAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
+A + + ++S + D +K+W+++S C++T + H +V
Sbjct: 88 VA-WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 127
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 249 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 308
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 309 NIIASAALENDKTIKLWKSD 328
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 55 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 113
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 114 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 173
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 174 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 227
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 228 GKYILAATL-DNTLKLWD 244
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 120/329 (36%), Gaps = 47/329 (14%)
Query: 153 NATKLERVFAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV 209
+AT+ + KP A L GH +S + P + S + D +K+W
Sbjct: 24 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFE 82
Query: 210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXX 269
+T H + DV + D + +S D T+K W ++S + L
Sbjct: 83 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFN 140
Query: 270 HQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL 329
Q + + + ++W+ + + ++ + D + V FN D ++ S + D +
Sbjct: 141 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 199
Query: 330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF 389
+DT + + + + +P P +V+ F
Sbjct: 200 WDT--------------ASGQCLKTLIDDDNP-------PVSFVK--------------F 224
Query: 390 VGPREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGE 444
+Y+ A N KL + GHK+ C+ + T I+SG+ D
Sbjct: 225 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 284
Query: 445 VKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
V +WNL ++ VQ Q H V T+ P
Sbjct: 285 VYIWNLQTKEIVQKLQGHTDVVISTACHP 313
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 256 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 315
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 316 NIIASAALENDKTIKLWKSD 335
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 27 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 85
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 86 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 145
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 146 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 199
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 200 GKYILAATL-DNTLKLWD 216
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 112/310 (36%), Gaps = 44/310 (14%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L GH +S + P + S + D +K+W +T H + DV + D
Sbjct: 15 LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWE 288
+ +S D T+K W ++S + L Q + + + ++W+
Sbjct: 74 NLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 289 HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET 348
+ + ++ + D + V FN D ++ S + D ++DT +
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT--------------AS 176
Query: 349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL---NATKLE 405
+ + + +P P +V+ F +Y+ A N KL
Sbjct: 177 GQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYILAATLDNTLKLW 215
Query: 406 RVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD 463
+ GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 275
Query: 464 GHVRDTSTRP 473
V T+ P
Sbjct: 276 DVVISTACHP 285
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 369 PREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAK---PFVANLDGHKDGISC 425
P ++ A + V + F E++ + +A KL +++ F + GHK GIS
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 66
Query: 426 LAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
+A + + ++S + D +K+W+++S C++T + H +V
Sbjct: 67 VA-WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 106
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 228 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 287
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 288 NIIASAALENDKTIKLWKSD 307
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 36 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 94
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 95 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 154
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 155 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 208
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 209 GKYILAATL-DNTLKLWD 225
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 120/329 (36%), Gaps = 47/329 (14%)
Query: 153 NATKLERVFAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV 209
+AT+ + KP A L GH +S + P + S + D +K+W
Sbjct: 5 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFE 63
Query: 210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXX 269
+T H + DV + D + +S D T+K W ++S + L
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFN 121
Query: 270 HQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL 329
Q + + + ++W+ + + ++ + D + V FN D ++ S + D +
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 180
Query: 330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF 389
+DT + + + + +P P +V+ F
Sbjct: 181 WDT--------------ASGQCLKTLIDDDNP-------PVSFVK--------------F 205
Query: 390 VGPREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGE 444
+Y+ A N KL + GHK+ C+ + T I+SG+ D
Sbjct: 206 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 265
Query: 445 VKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
V +WNL ++ VQ Q H V T+ P
Sbjct: 266 VYIWNLQTKEIVQKLQGHTDVVISTACHP 294
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 237 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 296
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 297 NIIASAALENDKTIKLWKSD 316
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 95
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 96 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 156 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 209
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 210 GKYILAATL-DNTLKLWD 226
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 120/329 (36%), Gaps = 47/329 (14%)
Query: 153 NATKLERVFAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV 209
+AT+ + KP A L GH +S + P + S + D +K+W
Sbjct: 6 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFE 64
Query: 210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXX 269
+T H + DV + D + +S D T+K W ++S + L
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 270 HQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL 329
Q + + + ++W+ + + ++ + D + V FN D ++ S + D +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 181
Query: 330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF 389
+DT + + + + +P P +V+ F
Sbjct: 182 WDT--------------ASGQCLKTLIDDDNP-------PVSFVK--------------F 206
Query: 390 VGPREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGE 444
+Y+ A N KL + GHK+ C+ + T I+SG+ D
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 445 VKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
V +WNL ++ VQ Q H V T+ P
Sbjct: 267 VYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 298 NIIASAALENDKTIKLWKSD 317
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 89
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 150 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 203
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 204 GKYILAATL-DNTLKLWD 220
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 119/328 (36%), Gaps = 47/328 (14%)
Query: 154 ATKLERVFAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ 210
AT+ + KP A L GH +S + P + S + D +K+W +
Sbjct: 1 ATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEK 59
Query: 211 TYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXH 270
T H + DV + D + +S D T+K W ++S + L
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 271 QRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILY 330
Q + + + ++W+ + + ++ + D + V FN D ++ S + D ++
Sbjct: 118 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIW 176
Query: 331 DTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV 390
DT + + + + +P P +V+ F
Sbjct: 177 DT--------------ASGQCLKTLIDDDNP-------PVSFVK--------------FS 201
Query: 391 GPREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEV 445
+Y+ A N KL + GHK+ C+ + T I+SG+ D V
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261
Query: 446 KVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
+WNL ++ VQ Q H V T+ P
Sbjct: 262 YIWNLQTKEIVQKLQGHTDVVISTACHP 289
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 292 NIIASAALENDKTIKLWKSD 311
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 89
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 150 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 203
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 204 GKYILAATL-DNTLKLWD 220
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 112/310 (36%), Gaps = 44/310 (14%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L GH +S + P + S + D +K+W +T H + DV + D
Sbjct: 19 LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWE 288
+ +S D T+K W ++S + L Q + + + ++W+
Sbjct: 78 NLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 289 HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET 348
+ + ++ + D + V FN D ++ S + D ++DT +
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT--------------AS 180
Query: 349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL---NATKLE 405
+ + + +P P +V+ F +Y+ A N KL
Sbjct: 181 GQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYILAATLDNTLKLW 219
Query: 406 RVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD 463
+ GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Query: 464 GHVRDTSTRP 473
V T+ P
Sbjct: 280 DVVISTACHP 289
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 369 PREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAK---PFVANLDGHKDGISC 425
P ++ A + V + F E++ + +A KL +++ F + GHK GIS
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 426 LAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
+A + + ++S + D +K+W+++S C++T + H +V
Sbjct: 71 VA-WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 292 NIIASAALENDKTIKLWKSD 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 95
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 96 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 156 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 209
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 210 GKYILAATL-DNTLKLWD 226
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 112/310 (36%), Gaps = 44/310 (14%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L GH +S + P + S + D +K+W +T H + DV + D
Sbjct: 25 LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWE 288
+ +S D T+K W ++S + L Q + + + ++W+
Sbjct: 84 NLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 289 HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET 348
+ + ++ + D + V FN D ++ S + D ++DT +
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT--------------AS 186
Query: 349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL---NATKLE 405
+ + + +P P +V+ F +Y+ A N KL
Sbjct: 187 GQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYILAATLDNTLKLW 225
Query: 406 RVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD 463
+ GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 464 GHVRDTSTRP 473
V T+ P
Sbjct: 286 DVVISTACHP 295
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 369 PREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAK---PFVANLDGHKDGISC 425
P ++ A + V + F E++ + +A KL +++ F + GHK GIS
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 426 LAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
+A + + ++S + D +K+W+++S C++T + H +V
Sbjct: 77 VA-WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 298 NIIASAALENDKTIKLWKSD 317
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 95
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 96 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 156 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 209
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 210 GKYILAATL-DNTLKLWD 226
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 120/329 (36%), Gaps = 47/329 (14%)
Query: 153 NATKLERVFAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV 209
+AT+ + KP A L GH +S + P + S + D +K+W
Sbjct: 6 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFE 64
Query: 210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXX 269
+T H + DV + D + +S D T+K W ++S + L
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 270 HQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL 329
Q + + + ++W+ + + ++ + D + V FN D ++ S + D +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 181
Query: 330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF 389
+DT + + + + +P P +V+ F
Sbjct: 182 WDT--------------ASGQCLKTLIDDDNP-------PVSFVK--------------F 206
Query: 390 VGPREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGE 444
+Y+ A N KL + GHK+ C+ + T I+SG+ D
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 445 VKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
V +WNL ++ VQ Q H V T+ P
Sbjct: 267 VYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 298 NIIASAALENDKTIKLWKSD 317
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 32 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 90
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 91 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 150
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 151 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 204
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 205 GKYILAATL-DNTLKLWD 221
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 112/310 (36%), Gaps = 44/310 (14%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L GH +S + P + S + D +K+W +T H + DV + D
Sbjct: 20 LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWE 288
+ +S D T+K W ++S + L Q + + + ++W+
Sbjct: 79 NLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 289 HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET 348
+ + ++ + D + V FN D ++ S + D ++DT +
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT--------------AS 181
Query: 349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL---NATKLE 405
+ + + +P P +V+ F +Y+ A N KL
Sbjct: 182 GQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYILAATLDNTLKLW 220
Query: 406 RVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD 463
+ GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 280
Query: 464 GHVRDTSTRP 473
V T+ P
Sbjct: 281 DVVISTACHP 290
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 369 PREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAK---PFVANLDGHKDGISC 425
P ++ A + V + F E++ + +A KL +++ F + GHK GIS
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 71
Query: 426 LAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
+A + + ++S + D +K+W+++S C++T + H +V
Sbjct: 72 VA-WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 111
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 233 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 292
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 293 NIIASAALENDKTIKLWKSD 312
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 30 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 88
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 89 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 148
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 149 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 202
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 203 GKYILAATL-DNTLKLWD 219
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 120/327 (36%), Gaps = 46/327 (14%)
Query: 152 LNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 211
L +T ++ +A F L GH +S + P + S + D +K+W +T
Sbjct: 3 LGSTPVKPNYALKFT--LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKT 59
Query: 212 YQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQ 271
H + DV + D + +S D T+K W ++S + L Q
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQ 117
Query: 272 RKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
+ + + ++W+ + + ++ + D + V FN D ++ S + D ++D
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 176
Query: 332 TRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG 391
T + + + + +P P +V+ F
Sbjct: 177 T--------------ASGQCLKTLIDDDNP-------PVSFVK--------------FSP 201
Query: 392 PREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVK 446
+Y+ A N KL + GHK+ C+ + T I+SG+ D V
Sbjct: 202 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 261
Query: 447 VWNLTSQSCVQTYQAHDGHVRDTSTRP 473
+WNL ++ VQ Q H V T+ P
Sbjct: 262 IWNLQTKEIVQKLQGHTDVVISTACHP 288
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 231 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 290
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 291 NIIASAALENDKTIKLWKSD 310
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 92
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 153 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 206
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 207 GKYILAATL-DNTLKLWD 223
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 116/321 (36%), Gaps = 47/321 (14%)
Query: 161 FAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG 217
F KP A L GH +S + P + S + D +K+W +T H
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 218 HVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIF 277
+ DV + D + +S D T+K W ++S + L Q +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 278 ATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVL 337
+ + ++W+ + + ++ + D + V FN D ++ S + D ++DT
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT----- 181
Query: 338 SRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVR 397
+ + + + +P P +V+ F +Y+
Sbjct: 182 ---------ASGQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYIL 211
Query: 398 AL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTS 452
A N KL + GHK+ C+ + T I+SG+ D V +WNL +
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 453 QSCVQTYQAHDGHVRDTSTRP 473
+ VQ Q H V T+ P
Sbjct: 272 KEIVQKLQGHTDVVISTACHP 292
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK + S+
Sbjct: 295 NIIASAALENDKTIKLFKSD 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 92
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + + +P H+
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 153 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 206
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 207 GKYILAATL-DNTLKLWD 223
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 116/321 (36%), Gaps = 47/321 (14%)
Query: 161 FAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG 217
F KP A L GH +S + P + S + D +K+W +T H
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 218 HVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIF 277
+ DV + D + +S D T+K W ++S + L Q +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 278 ATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVL 337
+ + ++W+ + + ++ + D + V FN D ++ S + D ++DT
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT----- 181
Query: 338 SRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVR 397
+ + + + +P P +V+ F +Y+
Sbjct: 182 ---------ASGQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYIL 211
Query: 398 AL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTS 452
A N KL + GHK+ C+ + T I+SG+ D V +WNL +
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 453 QSCVQTYQAHDGHVRDTSTRP 473
+ VQ Q H V T+ P
Sbjct: 272 KEIVQKLQGHTDVVISTACHP 292
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK + S+
Sbjct: 295 NIIASAALENDKTIKLYKSD 314
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 129/328 (39%), Gaps = 33/328 (10%)
Query: 165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCF 224
+ L GH + +A P TI S + D VK+WN Q +QT H VR V F
Sbjct: 49 LLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAF 106
Query: 225 LPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQ- 283
PDG S D T+K W + + ++ T I + D+
Sbjct: 107 SPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 162
Query: 284 CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDE 343
+LW + + ++ + + S+ V F+P D +AS + D+++ L++ +L +
Sbjct: 163 VKLW-NRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLL-----Q 215
Query: 344 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALN------------ATKLERVFAKPFVG 391
L +S+ + + D + V+ N ++ + V +P
Sbjct: 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRP--- 272
Query: 392 PREYVRALNATKLERVFAK--PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
+ + + + K +++ + + L GH + +A P TI S + D VK+WN
Sbjct: 273 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWN 331
Query: 450 LTSQSCVQTYQAHDGHVRDTSTRPAVET 477
Q +QT H V + P +T
Sbjct: 332 RNGQ-HLQTLTGHSSSVWGVAFSPDGQT 358
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 121/324 (37%), Gaps = 33/324 (10%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L+ H + +A P TI S + D VK+WN Q +QT H V V F PDG
Sbjct: 12 LEAHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDG 69
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQ-CQLW 287
S D T+K W + + ++ T I + D+ +LW
Sbjct: 70 QTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Query: 288 EHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRE 347
+ + ++ + + S+ V F+P D +AS + D+++ L++ +L + L
Sbjct: 126 -NRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLL-----QTLTG 178
Query: 348 TKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERV 407
+S+ + + D + V+ N + G VR + + +
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVRGVAFSPDGQT 235
Query: 408 FAKP--------------FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ 453
A + L GH ++ +A P TI S + D VK+WN Q
Sbjct: 236 IASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDG-QTIASASDDKTVKLWNRNGQ 294
Query: 454 SCVQTYQAHDGHVRDTSTRPAVET 477
+QT H V + P +T
Sbjct: 295 -LLQTLTGHSSSVWGVAFSPDGQT 317
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 9/170 (5%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L GH + +A P TI S + D VK+WN Q +QT H VR V F PDG
Sbjct: 340 LTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDG 397
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQ-CQLW 287
S D T+K W + + ++ T I + D+ +LW
Sbjct: 398 QTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW 453
Query: 288 EHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVL 337
+ + ++ + + S+ V F+P D +AS + D+++ L++ +L
Sbjct: 454 -NRNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLL 501
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 116/316 (36%), Gaps = 50/316 (15%)
Query: 165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCF 224
+ L GH + +A P TI S + D VK+WN Q +QT H V V F
Sbjct: 295 LLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAF 352
Query: 225 LPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQ- 283
PDG S D T+K W + + ++ T I + D+
Sbjct: 353 SPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408
Query: 284 CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDE 343
+LW + + ++ + + S+ V F+P D+ I AS + D+++ L++ +
Sbjct: 409 VKLW-NRNGQLLQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWNRNGQL------- 459
Query: 344 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATK 403
L G VR + F + + + + K
Sbjct: 460 -------------------LQTLTGHSSSVRGV-----------AFSPDGQTIASASDDK 489
Query: 404 LERVFAK--PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA 461
+++ + + L GH + +A P TI S + D VK+WN Q +QT
Sbjct: 490 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQ-LLQTLTG 547
Query: 462 HDGHVRDTSTRPAVET 477
H V + P +T
Sbjct: 548 HSSSVWGVAFSPDGQT 563
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCF 224
+ L GH + +A P TI S + D VK+WN Q +QT H V V F
Sbjct: 500 LLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAF 557
Query: 225 LPDGSQFLSVGIDNTIKTW 243
PDG S D T+K W
Sbjct: 558 SPDGQTIASASSDKTVKLW 576
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 95/198 (47%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 92
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + +P H+
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 153 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 206
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D ++ L+D
Sbjct: 207 GKYILAATL-DNTLKLWD 223
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 119/329 (36%), Gaps = 47/329 (14%)
Query: 153 NATKLERVFAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV 209
+AT+ + KP A L GH +S + P + S + D +K+W
Sbjct: 3 SATQSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFE 61
Query: 210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXX 269
+T H + DV + D + +S D T+K W ++S + L
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 270 HQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL 329
Q + + + ++W+ + ++ + D + V FN D ++ S + D +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 178
Query: 330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF 389
+DT + + + + +P P +V+ F
Sbjct: 179 WDT--------------ASGQCLKTLIDDDNP-------PVSFVK--------------F 203
Query: 390 VGPREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGE 444
+Y+ A N KL + GHK+ C+ + T I+SG+ D
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM 263
Query: 445 VKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
V +WNL ++ VQ Q H V T+ P
Sbjct: 264 VYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 295 NIIASAALENDKTIKLWKSD 314
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
Carboxyl-terminal Hydrolase 8
Length = 396
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 524 LINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPET 583
+I L+QG+ + V+CL C + + F + LP+ +S + + + +R F + E
Sbjct: 207 IIVALFQGQFKSTVQCLTCHKKSRTFEAFXYLSLPL----ASTSKCTLQDCLRLFSKEEK 262
Query: 584 LDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFD 624
L N+++C C + D+ K ++ + P +L +HL RF +D
Sbjct: 263 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYD 303
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 94/198 (47%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
F E++ + +A KL +++ F + GHK GIS +A + + ++S + D +
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 92
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
K+W+++S C++T + H +V F P + +S D +++ W + +P H+
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
++ S I ++ D C++W+ + ++ +D + V+F+P
Sbjct: 153 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 206
Query: 314 DKHILASCASDRSIILYD 331
K+ILA+ D + L+D
Sbjct: 207 GKYILAATL-DNDLKLWD 223
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 119/329 (36%), Gaps = 47/329 (14%)
Query: 153 NATKLERVFAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV 209
+AT+ + KP A L GH +S + P + S + D +K+W
Sbjct: 3 SATQSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFE 61
Query: 210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXX 269
+T H + DV + D + +S D T+K W ++S + L
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 270 HQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL 329
Q + + + ++W+ + ++ + D + V FN D ++ S + D +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 178
Query: 330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF 389
+DT + + + + +P P +V+ F
Sbjct: 179 WDT--------------ASGQCLKTLIDDDNP-------PVSFVK--------------F 203
Query: 390 VGPREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGE 444
+Y+ A N KL + GHK+ C+ + T I+SG+ D
Sbjct: 204 SPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM 263
Query: 445 VKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
V +WNL ++ VQ Q H V T+ P
Sbjct: 264 VYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 171 GHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
GHK+ C+ + T I+SG+ D V +WNL ++ VQ Q H V P
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 229 SQFLSVGIDN--TIKTWSSE 246
+ S ++N TIK W S+
Sbjct: 295 NIIASAALENDKTIKLWKSD 314
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 149 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC 208
+R N E+V + + H D I +A HPTK ++SG+ D VK+WN +
Sbjct: 79 IRVFNYNTGEKV------VDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA 131
Query: 209 V-QTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWS 244
+ QT++ H+ V V F P D S F S +D T+K WS
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 112/289 (38%), Gaps = 41/289 (14%)
Query: 174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS 233
D + + HPT+ +++ Y G V++WN +Q V++ Q + VR F+ + +
Sbjct: 14 DRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 234 VGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD-QCQLWEHERN 292
D I+ ++ E H H K + + D +LW E N
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV---HPTKPYVLSGSDDLTVKLWNWENN 129
Query: 293 EPI-RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTS 351
+ + F + + V FNP D AS DR++ ++ L ++ + T
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-----LGQSTPNFTLTTGQE 184
Query: 352 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN--ATKLERVFA 409
R +N + KP++ + A + K+
Sbjct: 185 ----------------------RGVNYVDYYPLPDKPYM-----ITASDDLTIKIWDYQT 217
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 458
K VA L+GH +S HPT L IISG+ DG +K+WN ++ +T
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKT 265
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 162 AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD 221
K VA L+GH +S HPT L IISG+ DG +K+WN ++ +T G R
Sbjct: 217 TKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERS 273
Query: 222 VCFL--PDGSQ-FLSVGIDN 238
C P G + +++ G DN
Sbjct: 274 WCIATHPTGRKNYIASGFDN 293
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL---TSQSCVQTYQAHDGHVRDVCFL 225
+GH+ + C+A +P ST SG D VKVW+L T + T Q + D L
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 226 PDGSQFLSVGIDNTIKTW 243
PD ++ D TIK W
Sbjct: 196 PDKPYMITASDDLTIKIW 213
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 35/177 (19%)
Query: 296 RAFSWNVDSLHHVQFNPIDKHILASCASDR-SIILYDTRATVLSRNPDEYLRETKTSIHR 354
+ FS D + + F+P + +L + S R + Y+T+ V S E I R
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 355 ---------------IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV--GPREYVR 397
N + FE +Y+R++ KP+V G +
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-----TKPYVLSGSDDLTV 121
Query: 398 AL----NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
L N LE+ F +GH+ + C+A +P ST SG D VKVW+L
Sbjct: 122 KLWNWENNWALEQTF--------EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 149 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC 208
+R N E+V + + H D I +A HPTK ++SG+ D VK+WN +
Sbjct: 79 IRVFNYNTGEKV------VDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA 131
Query: 209 V-QTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWS 244
+ QT++ H+ V V F P D S F S +D T+K WS
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 112/289 (38%), Gaps = 41/289 (14%)
Query: 174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS 233
D + + HPT+ +++ Y G V++WN +Q V++ Q + VR F+ + +
Sbjct: 14 DRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 234 VGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD-QCQLWEHERN 292
D I+ ++ E H H K + + D +LW E N
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV---HPTKPYVLSGSDDLTVKLWNWENN 129
Query: 293 EPI-RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTS 351
+ + F + + V FNP D AS DR++ ++ L ++ + T
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-----LGQSTPNFTLTTGQE 184
Query: 352 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN--ATKLERVFA 409
R +N + KP++ + A + K+
Sbjct: 185 ----------------------RGVNYVDYYPLPDKPYM-----ITASDDLTIKIWDYQT 217
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 458
K VA L+GH +S HPT L IISG+ DG +K+WN ++ +T
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKT 265
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 162 AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD 221
K VA L+GH +S HPT L IISG+ DG +K+WN ++ +T G R
Sbjct: 217 TKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERS 273
Query: 222 VCFL--PDGSQ-FLSVGIDN 238
C P G + +++ G DN
Sbjct: 274 WCIATHPTGRKNYIASGFDN 293
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL---TSQSCVQTYQAHDGHVRDVCFL 225
+GH+ + C+A +P ST SG D VKVW+L T + T Q + D L
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 226 PDGSQFLSVGIDNTIKTW 243
PD ++ D TIK W
Sbjct: 196 PDKPYMITASDDLTIKIW 213
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 35/177 (19%)
Query: 296 RAFSWNVDSLHHVQFNPIDKHILASCASDR-SIILYDTRATVLSRNPDEYLRETKTSIHR 354
+ FS D + + F+P + +L + S R + Y+T+ V S E I R
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 355 ---------------IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV--GPREYVR 397
N + FE +Y+R++ KP+V G +
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-----TKPYVLSGSDDLTV 121
Query: 398 AL----NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
L N LE+ F +GH+ + C+A +P ST SG D VKVW+L
Sbjct: 122 KLWNWENNWALEQTF--------EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV-QTYQAHDGHVRDVCF 224
V + + H D I +A HPTK ++SG+ D VK+WN + + QT++ H+ V V F
Sbjct: 90 VVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 225 LP-DGSQFLSVGIDNTIKTWS 244
P D S F S +D T+K WS
Sbjct: 149 NPKDPSTFASGCLDRTVKVWS 169
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 111/289 (38%), Gaps = 41/289 (14%)
Query: 174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS 233
D + + HPT+ +++ Y G V++WN +Q V++ Q + VR F+ + +
Sbjct: 14 DRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 234 VGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD-QCQLWEHERN 292
D I+ ++ E H H K + + D +LW E N
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV---HPTKPYVLSGSDDLTVKLWNWENN 129
Query: 293 EPI-RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTS 351
+ + F + + V FNP D AS DR++ ++ +
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--------------- 174
Query: 352 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN--ATKLERVFA 409
P+ G R +N + KP++ + A + K+
Sbjct: 175 ---------PNFTLTTGQE---RGVNYVDYYPLPDKPYM-----ITASDDLTIKIWDYQT 217
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 458
K VA L+GH +S HPT L IISG+ DG +K+WN ++ +T
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKT 265
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDV 222
K VA L+GH +S HPT L IISG+ DG +K+WN ++ +T G R
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSW 274
Query: 223 CFL--PDGSQ-FLSVGIDN 238
C P G + +++ G DN
Sbjct: 275 CIATHPTGRKNYIASGFDN 293
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL---TSQSCVQTYQAHDGHVRDVCFL 225
+GH+ + C+A +P ST SG D VKVW+L T + T Q + D L
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 226 PDGSQFLSVGIDNTIKTW 243
PD ++ D TIK W
Sbjct: 196 PDKPYMITASDDLTIKIW 213
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 35/177 (19%)
Query: 296 RAFSWNVDSLHHVQFNPIDKHILASCASDR-SIILYDTRATVLSRNPDEYLRETKTSIHR 354
+ FS D + + F+P + +L + S R I Y+T+ V S E I R
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 355 ---------------IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV--GPREYVR 397
N + FE +Y+R++ KP+V G +
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-----TKPYVLSGSDDLTV 121
Query: 398 AL----NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
L N LE+ F +GH+ + C+A +P ST SG D VKVW+L
Sbjct: 122 KLWNWENNWALEQTF--------EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 149 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC 208
+R N E+V + + H D I +A HPTK ++SG+ D VK+WN +
Sbjct: 79 IRVFNYNTGEKV------VDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA 131
Query: 209 V-QTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWS 244
+ QT++ H+ V V F P D S F S +D T+K WS
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 112/289 (38%), Gaps = 41/289 (14%)
Query: 174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS 233
D + + HPT+ +++ Y G V++WN +Q V++ Q + VR F+ + +
Sbjct: 14 DRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 234 VGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD-QCQLWEHERN 292
D I+ ++ E H H K + + D +LW E N
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV---HPTKPYVLSGSDDLTVKLWNWENN 129
Query: 293 EPI-RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTS 351
+ + F + + V FNP D AS DR++ ++ L ++ + T
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-----LGQSTPNFTLTTGQE 184
Query: 352 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN--ATKLERVFA 409
R +N + KP++ + A + K+
Sbjct: 185 ----------------------RGVNYVDYYPLPDKPYM-----ITASDDLTIKIWDYQT 217
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 458
K VA L+GH +S HPT L IISG+ DG +K+WN ++ +T
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKT 265
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDV 222
K VA L+GH +S HPT L IISG+ DG +K+WN ++ +T G R
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSW 274
Query: 223 CFL--PDGSQ-FLSVGIDN 238
C P G + +++ G DN
Sbjct: 275 CIATHPTGRKNYIASGFDN 293
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL---TSQSCVQTYQAHDGHVRDVCFL 225
+GH+ + C+A +P ST SG D VKVW+L T + T Q + D L
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 226 PDGSQFLSVGIDNTIKTW 243
PD ++ D TIK W
Sbjct: 196 PDKPYMITASDDLTIKIW 213
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 35/177 (19%)
Query: 296 RAFSWNVDSLHHVQFNPIDKHILASCASDR-SIILYDTRATVLSRNPDEYLRETKTSIHR 354
+ FS D + + F+P + +L + S R + Y+T+ V S E I R
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 355 ---------------IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV--GPREYVR 397
N + FE +Y+R++ KP+V G +
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-----TKPYVLSGSDDLTV 121
Query: 398 AL----NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
L N LE+ F +GH+ + C+A +P ST SG D VKVW+L
Sbjct: 122 KLWNWENNWALEQTF--------EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 17/193 (8%)
Query: 147 EYVRALNATKLERVFAKPFVANLDGHKDGI--SCLAKHPTKLSTIISGAYDGEVKVWNLT 204
E++ N T L R+ +P H D + +C ++ + I S D ++V+
Sbjct: 602 EWINKKNITNLSRLVVRP-------HTDAVYHACFSEDGQR---IASCGADKTLQVFKAE 651
Query: 205 SQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXX 264
+ + +AH+ V F D + +D +K W+S E H H+
Sbjct: 652 TGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCC 711
Query: 265 XXXXXHQRKSKIFATCGDQC--QLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA 322
+ AT C +LW+ + E + +S++H +F+P DK +LASC+
Sbjct: 712 HFTNSSHH--LLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDK-LLASCS 768
Query: 323 SDRSIILYDTRAT 335
+D ++ L+D +
Sbjct: 769 ADGTLKLWDATSA 781
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 185 KLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
K S ++S ++DG VKVWN+ + + + + H G V D ++F S D T K WS
Sbjct: 1060 KNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWS 1119
Query: 245 SELSESDHIVPLH 257
+L ++PLH
Sbjct: 1120 FDL-----LLPLH 1127
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV--------QTYQAHDGHVR 220
L GH + C A + + +G +GE+++WN+++ + + H G V
Sbjct: 1129 LRGHNGCVRCSA-FSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVT 1187
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWSSELSES 250
D+CF PDG +S G IK W+ ES
Sbjct: 1188 DLCFSPDGKMLISAG--GYIKWWNVVTGES 1215
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 143 EGPREYVRALNATKLERVFAKPFVANL-DGHKDGIS-CLAKHPTKLSTIISGAYDGEVKV 200
+G R V A N L + + + GH I C L+ + Y V++
Sbjct: 815 DGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYC--VEL 872
Query: 201 WNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE 246
WN S+S V + H V V F PDGS FL+ D TI+ W ++
Sbjct: 873 WNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 188 TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
T+IS + D E++VWN C+ + H V+D L + S+ LS D T+K W+
Sbjct: 1023 TLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKN-SRLLSWSFDGTVKVWN 1077
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 371 EYVRALNATKLERVFAKP---------FVGPREYVRALNATKLERVFAKPF---VANLDG 418
E++ N T L R+ +P F + + + A K +VF + +
Sbjct: 602 EWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKA 661
Query: 419 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
H+D + C A T I + + D +VK+WN + V TY H V
Sbjct: 662 HEDEVLCCA-FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQV 708
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 432 KLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
K S ++S ++DG VKVWN+ + + + + H G V
Sbjct: 1060 KNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTV 1094
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With
Ubiquitin
Length = 348
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 27/156 (17%)
Query: 491 AWQQHDIQELCRVLFDALETQF---------------------KGS----KTTGDQADLI 525
+ Q D QE R L D L + KG K + I
Sbjct: 95 GYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRI 154
Query: 526 NNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLD 585
+L+ G+++ + C +CG + D F D+ LP+ G +++ MR F + + LD
Sbjct: 155 GDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLD 212
Query: 586 GANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRF 621
G + C +C + K FP +L LHL RF
Sbjct: 213 GDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRF 248
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin
Length = 359
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 27/156 (17%)
Query: 491 AWQQHDIQELCRVLFDALETQF---------------------KGS----KTTGDQADLI 525
+ Q D QE R L D L + KG K + I
Sbjct: 95 GYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRI 154
Query: 526 NNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLD 585
+L+ G+++ + C +CG + D F D+ LP+ G +++ MR F + + LD
Sbjct: 155 GDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLD 212
Query: 586 GANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRF 621
G + C +C + K FP +L LHL RF
Sbjct: 213 GDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRF 248
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDI----AEETSITYQLQKLFVNLQTST----- 52
TC++NS++Q L T E R+ + Y D+ T++ + KL + TS+
Sbjct: 18 TCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVV 77
Query: 53 RPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQ 92
P+ T + R + Q D QE R L D L +
Sbjct: 78 SPSEFKTQIQRY--APRFVGYNQQDAQEFLRFLLDGLHNE 115
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
pdb|3V6E|A Chain A, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 367
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 27/156 (17%)
Query: 491 AWQQHDIQELCRVLFDALETQF---------------------KGS----KTTGDQADLI 525
+ Q D QE R L D L + KG K + I
Sbjct: 114 GYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRI 173
Query: 526 NNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLD 585
+L+ G+++ + C +CG + D F D+ LP+ G +++ MR F + + LD
Sbjct: 174 GDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLD 231
Query: 586 GANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRF 621
G + C +C + K FP +L LHL RF
Sbjct: 232 GDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRF 267
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDI----AEETSITYQLQKLFVNLQTST----- 52
TC++NS++Q L T E R+ + Y D+ T++ + KL + TS+
Sbjct: 37 TCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVV 96
Query: 53 RPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQ 92
P+ T + R + Q D QE R L D L +
Sbjct: 97 SPSEFKTQIQRY--APRFVGYNQQDAQEFLRFLLDGLHNE 134
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 174 DGISCLAKHPTKL--STIISGAYDGEVKVWNL--TSQSCVQTYQAHDGHVRDVCFLPDGS 229
D I CL+ P L + +I+G++ +V+ W + + Q+ + Q H G V DVC+ DGS
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 230 QFLSVGIDNTIKTW----SSELSESDHIVPLHT 258
+ + D T K W + + + H P+ T
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKT 132
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 160 VFAKPFVANLDGHKDGISCLAKHPTKL-STIISGAYDGEVKVWNLTSQSCVQTYQAHDGH 218
V + + + GH + CL P++ +T +SG D + VW++ S CVQ ++ H+
Sbjct: 183 VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD 242
Query: 219 VRDVCFLPDGSQFLSVGIDNTIK 241
V V + P G F S D T +
Sbjct: 243 VNSVRYYPSGDAFASGSDDATCR 265
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 407 VFAKPFVANLDGHKDGISCLAKHPTKL-STIISGAYDGEVKVWNLTSQSCVQTYQAHDGH 465
V + + + GH + CL P++ +T +SG D + VW++ S CVQ ++ H+
Sbjct: 183 VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD 242
Query: 466 VRDTSTRPA 474
V P+
Sbjct: 243 VNSVRYYPS 251
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
+ +G D + VW++ S V H+ V + PDG+ F S D+T++ W+
Sbjct: 299 LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 12/174 (6%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L GH + + C+ K I+S + DG+V VW+ + + V + P G
Sbjct: 60 LKGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 118
Query: 229 SQFLSVGIDNTIKTWSSELSESDHI------VPLHTXXXXXXXXXXXHQRKSKIFATCGD 282
G+DN + +++++ V +HT +I GD
Sbjct: 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM---QILTASGD 175
Query: 283 -QCQLWEHERNEPIRAFSWNVDSLHHVQFNPID-KHILASCASDRSIILYDTRA 334
C LW+ E + +++F + + + P + + S D+ +++D R+
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 92/266 (34%), Gaps = 39/266 (14%)
Query: 189 IISGAYDGEVKVWNLT------SQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKT 242
I G D + V+ LT + ++ H ++ F Q L+ D T
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL 180
Query: 243 WSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNV 302
W E + H + + C + +W+ + ++AF +
Sbjct: 181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE 240
Query: 303 DSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPS 362
++ V++ P AS + D + LYD RA E +K SI ++D S
Sbjct: 241 SDVNSVRYYP-SGDAFASGSDDATCRLYDLRA------DREVAIYSKESIIFGASSVDFS 293
Query: 363 LHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDG 422
L R L F G +Y + V V+ L GH++
Sbjct: 294 LSG--------RLL------------FAGYNDYT-----INVWDVLKGSRVSILFGHENR 328
Query: 423 ISCLAKHPTKLSTIISGAYDGEVKVW 448
+S L P + SG++D ++VW
Sbjct: 329 VSTLRVSPDG-TAFCSGSWDHTLRVW 353
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex
Length = 374
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 27/156 (17%)
Query: 491 AWQQHDIQELCRVLFDALETQF---------------------KGS----KTTGDQADLI 525
+ Q D QE R L D L + KG K + I
Sbjct: 121 GYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRI 180
Query: 526 NNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLD 585
+L+ G+++ + C +CG + D F D+ LP+ G +++ MR F + + LD
Sbjct: 181 GDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLD 238
Query: 586 GANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRF 621
G C +C + K FP +L LHL RF
Sbjct: 239 GDAAPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRF 274
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDI----AEETSITYQLQKLFVNLQTST----- 52
TC++NS++Q L T E R+ + Y D+ T++ + KL + TS+
Sbjct: 44 TCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVV 103
Query: 53 RPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQ 92
P+ T + R + Q D QE R L D L +
Sbjct: 104 SPSEFKTQIQRY--APRFVGYNQQDAQEFLRFLLDGLHNE 141
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 17/209 (8%)
Query: 136 DPSLHPFEGPREYVRALNATKLER--VFAKP-----FVANLDGHKDGISCLAKHPTKLST 188
D +LH ++ P+E + + + VF P FV L GH + ++ H +
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG---NI 282
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS 248
++SG+YD + VW++ C+ H + + + + +S +D TI+ W E
Sbjct: 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342
Query: 249 ESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHV 308
E + + HT + K + + + N+ R FS++ +L +
Sbjct: 343 ELMYTLQGHTALVGLL------RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI 396
Query: 309 QFNPIDKHILASCASDRSIILYDTRATVL 337
+ +IL S S+ +Y+ R+ L
Sbjct: 397 TTFYVSDNILVS-GSENQFNIYNLRSGKL 424
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 156 KLERVF---AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY 212
K+ RV+ K F+ L GH G+ L + ++SG+ D V+VW++ C +
Sbjct: 142 KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI--LVSGSTDRTVRVWDIKKGCCTHVF 199
Query: 213 QAHDGHVR--DVCFLPDGSQFLSVGIDNTIKTWS--SELSESDH 252
+ H+ VR D+ + ++ DNT+ W E S DH
Sbjct: 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 403 KLERVF---AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY 459
K+ RV+ K F+ L GH G+ L + ++SG+ D V+VW++ C +
Sbjct: 142 KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI--LVSGSTDRTVRVWDIKKGCCTHVF 199
Query: 460 QAHDGHVR 467
+ H+ VR
Sbjct: 200 EGHNSTVR 207
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 26/126 (20%)
Query: 364 HPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLER---------------VF 408
H FEG VR L+ + + + G R+ L+ KL + VF
Sbjct: 197 HVFEGHNSTVRCLDIVEYKNI-KYIVTGSRD--NTLHVWKLPKESSVPDHGEEHDYPLVF 253
Query: 409 AKP-----FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD 463
P FV L GH + ++ H + ++SG+YD + VW++ C+ H
Sbjct: 254 HTPEENPYFVGVLRGHMASVRTVSGHG---NIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310
Query: 464 GHVRDT 469
+ T
Sbjct: 311 DRIYST 316
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 12/180 (6%)
Query: 161 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
F P A L GH +S LA I S ++D +++W+L + + + + H V
Sbjct: 65 FGIPHKA-LTGHNHFVSDLALSQENCFAI-SSSWDKTLRLWDLRTGTTYKRFVGHQSEVY 122
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS--SELSESDHIVPLHTXXXXXXXXXXXHQRKSKI-- 276
V F PD Q LS G + IK W+ E S H+ + +K+
Sbjct: 123 SVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQP 182
Query: 277 ----FATCGDQCQLWEHERNEPIR-AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
FA+ G +L N IR F + +++H+ +P K+I A+ D+ ++++D
Sbjct: 183 FAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYI-ATGGKDKKLLIWD 241
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 414 ANLDGHKDGISCLAKHPTKLST---------IISGAYDGEVKVWNLTSQSCVQTYQAHDG 464
A + H D +SC+ P S S +DG +KVWN Q T++AH+
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-IRYTFKAHES 214
Query: 465 HVRDTSTRP 473
+V S P
Sbjct: 215 NVNHLSISP 223
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 85/209 (40%), Gaps = 17/209 (8%)
Query: 136 DPSLHPFEGPREYVRALNATKLER--VFAKP-----FVANLDGHKDGISCLAKHPTKLST 188
D +LH ++ P+E + + + VF P FV L GH + ++ H +
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHG---NI 282
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS 248
++SG+YD + VW++ C+ H + + + + +S D TI+ W E
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENG 342
Query: 249 ESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHV 308
E + + HT + K + + + N+ R FS++ +L +
Sbjct: 343 ELXYTLQGHTALVGLL------RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI 396
Query: 309 QFNPIDKHILASCASDRSIILYDTRATVL 337
+ +IL S S+ +Y+ R+ L
Sbjct: 397 TTFYVSDNILVS-GSENQFNIYNLRSGKL 424
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR-- 220
K F+ L GH G+ L + ++SG+ D V+VW++ C ++ H+ VR
Sbjct: 152 KKFLLQLSGHDGGVWALKYAHGGI--LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS--SELSESDH 252
D+ + ++ DNT+ W E S DH
Sbjct: 210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 467
K F+ L GH G+ L + ++SG+ D V+VW++ C ++ H+ VR
Sbjct: 152 KKFLLQLSGHDGGVWALKYAHGGI--LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 207
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 26/126 (20%)
Query: 364 HPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLER---------------VF 408
H FEG VR L+ + + + G R+ L+ KL + VF
Sbjct: 197 HVFEGHNSTVRCLDIVEYKNI-KYIVTGSRD--NTLHVWKLPKESSVPDHGEEHDYPLVF 253
Query: 409 AKP-----FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD 463
P FV L GH + ++ H + ++SG+YD + VW++ C+ H
Sbjct: 254 HTPEENPYFVGVLRGHXASVRTVSGHG---NIVVSGSYDNTLIVWDVAQXKCLYILSGHT 310
Query: 464 GHVRDT 469
+ T
Sbjct: 311 DRIYST 316
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 140 HPF---EGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG 196
HP G R +R +N ++ + K +V GH + I+ L HP + ++S + D
Sbjct: 80 HPLLAVAGSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDH 133
Query: 197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD----GSQFLSVGIDNTIKTW 243
+++WN+ + + V + +GH RD D G + +S G+D+++K W
Sbjct: 134 ALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEKIMSCGMDHSLKLW 183
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
G R +R +N ++ + K +V GH + I+ L HP + ++S + D +++WN+
Sbjct: 87 GSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 140
Query: 451 TSQSCVQTYQAHDGH 465
+ + V + +GH
Sbjct: 141 QTDTLVAIFGGVEGH 155
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 140 HPF---EGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG 196
HP G R +R +N ++ + K +V GH + I+ L HP + ++S + D
Sbjct: 85 HPLLAVAGSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDH 138
Query: 197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD----GSQFLSVGIDNTIKTW 243
+++WN+ + + V + +GH RD D G + +S G+D+++K W
Sbjct: 139 ALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEKIMSCGMDHSLKLW 188
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 390 VGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
G R +R +N ++ + K +V GH + I+ L HP + ++S + D +++WN
Sbjct: 91 AGSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144
Query: 450 LTSQSCVQTYQAHDGH 465
+ + + V + +GH
Sbjct: 145 IQTDTLVAIFGGVEGH 160
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 140 HPF---EGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG 196
HP G R +R +N ++ + K +V GH + I+ L HP + ++S + D
Sbjct: 84 HPLLAVAGSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD----GSQFLSVGIDNTIKTW 243
+++WN+ + + V + +GH RD D G + +S G+D+++K W
Sbjct: 138 ALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
G R +R +N ++ + K +V GH + I+ L HP + ++S + D +++WN+
Sbjct: 91 GSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
Query: 451 TSQSCVQTYQAHDGH 465
+ + V + +GH
Sbjct: 145 QTDTLVAIFGGVEGH 159
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 12/178 (6%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L GH + L P K + I+S + DG + VWN + + H V + F P+G
Sbjct: 62 LQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 229 SQFLSVGIDNTIKTWS-SELSESDHIVPLHTXXXXXXXXXXXHQ----RKSKIFATCGDQ 283
G+D+ ++ S ++ D +P+ Q +++++ GDQ
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 284 -CQLWEHERNEPIRAFSWNVDSLH-----HVQFNPIDKHILASCASDRSIILYDTRAT 335
C LW+ + I F S H + N ++ ++ S + D ++ L+D R T
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 160 VFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL-TSQSCVQTYQAHDGH 218
+F F + GH + L+ + + ISG+ D V++W+L + V+TY H+G
Sbjct: 195 IFGSEFPS---GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD 251
Query: 219 VRDVCFLPDGSQFLSVGIDNTIK 241
+ V F PDG +F + D T +
Sbjct: 252 INSVKFFPDGQRFGTGSDDGTCR 274
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 202 NLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLH 257
N T C +T Q H G V + + P+ + +S D + W++ S+ H + LH
Sbjct: 52 NPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH 107
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 407 VFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL-TSQSCVQTYQAHDGH 465
+F F + GH + L+ + + ISG+ D V++W+L + V+TY H+G
Sbjct: 195 IFGSEFPS---GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD 251
Query: 466 VRDTSTRP 473
+ P
Sbjct: 252 INSVKFFP 259
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 140 HPF---EGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG 196
HP G R +R +N ++ + K +V GH + I+ L HP + ++S + D
Sbjct: 84 HPLLAVAGSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD----GSQFLSVGIDNTIKTW 243
+++WN+ + + V + +GH RD D G + +S G+D+++K W
Sbjct: 138 ALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 390 VGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
G R +R +N ++ + K +V GH + I+ L HP + ++S + D +++WN
Sbjct: 90 AGSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDHALRLWN 143
Query: 450 LTSQSCVQTYQAHDGH 465
+ + + V + +GH
Sbjct: 144 IQTDTLVAIFGGVEGH 159
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 140 HPF---EGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG 196
HP G R +R +N ++ + K +V GH + I+ L HP + ++S + D
Sbjct: 121 HPLLAVAGSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDH 174
Query: 197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD----GSQFLSVGIDNTIKTW 243
+++WN+ + + V + +GH RD D G + +S G+D+++K W
Sbjct: 175 ALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEKIMSCGMDHSLKLW 224
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 390 VGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
G R +R +N ++ + K +V GH + I+ L HP + ++S + D +++WN
Sbjct: 127 AGSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDHALRLWN 180
Query: 450 LTSQSCVQTYQAHDGH 465
+ + + V + +GH
Sbjct: 181 IQTDTLVAIFGGVEGH 196
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL----------------TSQSCVQTY 212
L GH+ I ++ P + + + D VK+W++ SQ+
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 213 QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSES 250
AH+G V +CF DG L+VG DN ++ W+S E+
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 65/176 (36%), Gaps = 14/176 (7%)
Query: 172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY-------------QAHDGH 218
H GI+ L P + ++SG DG + +++L + S Y H
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 219 VRDVCFLP-DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIF 277
V V + P D F S D T+K W + ++ + +
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 278 ATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR 333
T G + QL + + + + V ++P +ILA+ ++D + L+D R
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 172 HKDGISCLAKHPT-KLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
H D +SC+ P+ I+SG +D VKVW+L + V + H +V V PDGS
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 231 FLSVGIDNTIKTW 243
S D + W
Sbjct: 211 CASSDKDGVARLW 223
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L+GH +S +A + +S ++D +++WNL + C + H V V F PD
Sbjct: 63 LEGHSAFVSDVALSNNG-NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 229 SQFLSVGIDNTIKTWS 244
Q +S G DN ++ W+
Sbjct: 122 RQIVSGGRDNALRVWN 137
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 419 HKDGISCLAKHPT-KLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
H D +SC+ P+ I+SG +D VKVW+L + V + H +V + P
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP 206
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ--AHDGHVRDVCFLP-- 226
GH + +A P I+SG D ++VWN+ + C+ T AH V V F P
Sbjct: 107 GHTKDVLSVAFSPDN-RQIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSL 164
Query: 227 DGSQFLSVGIDNTIKTW 243
D +S G DN +K W
Sbjct: 165 DAPVIVSGGWDNLVKVW 181
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE 246
S ++S ++DG VKVWN+ + + + H G V D ++F S D T K WS +
Sbjct: 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115
Query: 247 LSESDHIVPLH 257
L + PLH
Sbjct: 1116 L-----LSPLH 1121
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 81/193 (41%), Gaps = 17/193 (8%)
Query: 147 EYVRALNATKLERVFAKPFVANLDGHKDGI--SCLAKHPTKLSTIISGAYDGEVKVWNLT 204
E++ L R+ +P H D + +C ++ + I S D ++V+
Sbjct: 596 EWINKKTIKNLSRLVVRP-------HTDAVYHACFSQDGQR---IASCGADKTLQVFKAE 645
Query: 205 SQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXX 264
+ + +AH+ V F D S + D +K W S + H H+
Sbjct: 646 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS--EQVN 703
Query: 265 XXXXXHQRKSKIFATCGDQ--CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA 322
++ + AT + +LW+ + E + +S++H +F+P D +LASC+
Sbjct: 704 CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCS 762
Query: 323 SDRSIILYDTRAT 335
+D ++ L+D R+
Sbjct: 763 ADGTLRLWDVRSA 775
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 143 EGPREYVRALNATKLERVFAKPFVANL-DGHKDGISCLAKHP-TKLSTIISGAYDGEVKV 200
+G + V A N L + +A + GH I P L+ I Y V++
Sbjct: 809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC--VEL 866
Query: 201 WNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE 246
WN+ S+ V + H V V F PDGS FL+ D TI+ W ++
Sbjct: 867 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS----QSCV-----QTYQAHDGHV 219
L GH + C A + + +G +GE+++WN++ SC + H G V
Sbjct: 1123 LKGHNGCVRCSAFSLDGI-LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1181
Query: 220 RDVCFLPDGSQFLSVGIDNTIKTWSSELSES 250
DVCF PD +S G +K W+ +S
Sbjct: 1182 TDVCFSPDSKTLVSAG--GYLKWWNVATGDS 1210
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 141 PFEGPREYVRALNATKLERVF---AKPFVANLDGHKDGISCLAKHPTKLST---IISGAY 194
F Y+ +A K +++ V D H + ++C H T S + +G+
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC--HFTNKSNHLLLATGSN 721
Query: 195 DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW 243
D +K+W+L + C T H V F PD S D T++ W
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 178 CLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID 237
CL+ H L + G DG +K+ L + + H VR + F DG +S D
Sbjct: 968 CLSPH---LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED 1024
Query: 238 NTIKTWS 244
+ I+ W+
Sbjct: 1025 SVIQVWN 1031
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 24/188 (12%)
Query: 300 WNVDS-------------LHHVQFNPIDKHILASCASDRSIILYDTR------ATVLSRN 340
WN+DS +H V F+P D + + D++I +++T+ A VL +
Sbjct: 867 WNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925
Query: 341 PDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN 400
D +E +T + + NI L G + L ++ P + +
Sbjct: 926 IDVVFQENETMVLAVD-NI-RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 983
Query: 401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ 460
A K+ + ++ GHK + + + T+IS + D ++VWN + V Q
Sbjct: 984 AIKIIELPNNRVFSSGVGHKKAVRHI-QFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQ 1041
Query: 461 AHDGHVRD 468
AH V+D
Sbjct: 1042 AHQETVKD 1049
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 434 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
S ++S ++DG VKVWN+ + + + H G V
Sbjct: 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV 1088
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE 246
S ++S ++DG VKVWN+ + + + H G V D ++F S D T K WS +
Sbjct: 1063 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1122
Query: 247 LSESDHIVPLH 257
L + PLH
Sbjct: 1123 L-----LSPLH 1128
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 81/193 (41%), Gaps = 17/193 (8%)
Query: 147 EYVRALNATKLERVFAKPFVANLDGHKDGI--SCLAKHPTKLSTIISGAYDGEVKVWNLT 204
E++ L R+ +P H D + +C ++ + I S D ++V+
Sbjct: 603 EWINKKTIKNLSRLVVRP-------HTDAVYHACFSQDGQR---IASCGADKTLQVFKAE 652
Query: 205 SQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXX 264
+ + +AH+ V F D S + D +K W S + H H+
Sbjct: 653 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS--EQVN 710
Query: 265 XXXXXHQRKSKIFATCGDQ--CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA 322
++ + AT + +LW+ + E + +S++H +F+P D +LASC+
Sbjct: 711 CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCS 769
Query: 323 SDRSIILYDTRAT 335
+D ++ L+D R+
Sbjct: 770 ADGTLRLWDVRSA 782
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 198 VKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE 246
V++WN+ S+ V + H V V F PDGS FL+ D TI+ W ++
Sbjct: 871 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS----QSCV-----QTYQAHDGHV 219
L GH + C A + + +G +GE+++WN++ SC + H G V
Sbjct: 1130 LKGHNGCVRCSAFSLDGI-LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1188
Query: 220 RDVCFLPDGSQFLSVGIDNTIKTWSSELSES 250
DVCF PD +S G +K W+ +S
Sbjct: 1189 TDVCFSPDSKTLVSAG--GYLKWWNVATGDS 1217
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 142 FEGPREYVRALNATKLERVF---AKPFVANLDGHKDGISCLAKHPTKLST---IISGAYD 195
F Y+ +A K +++ V D H + ++C H T S + +G+ D
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC--HFTNKSNHLLLATGSND 729
Query: 196 GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW 243
+K+W+L + C T H V F PD S D T++ W
Sbjct: 730 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 178 CLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID 237
CL+ H L + G DG +K+ L + + H VR + F DG +S D
Sbjct: 975 CLSPH---LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED 1031
Query: 238 NTIKTWS 244
+ I+ W+
Sbjct: 1032 SVIQVWN 1038
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 24/188 (12%)
Query: 300 WNVDS-------------LHHVQFNPIDKHILASCASDRSIILYDTR------ATVLSRN 340
WN+DS +H V F+P D + + D++I +++T+ A VL +
Sbjct: 874 WNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 932
Query: 341 PDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN 400
D +E +T + + NI L G + L ++ P + +
Sbjct: 933 IDVVFQENETMVLAVD-NI-RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 990
Query: 401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ 460
A K+ + ++ GHK + + + T+IS + D ++VWN + V Q
Sbjct: 991 AIKIIELPNNRVFSSGVGHKKAVRHI-QFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQ 1048
Query: 461 AHDGHVRD 468
AH V+D
Sbjct: 1049 AHQETVKD 1056
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 434 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
S ++S ++DG VKVWN+ + + + H G V
Sbjct: 1063 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV 1095
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIK 241
+SGA D K+W++ C QT+ H+ + +CF P+G+ F + D T +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/280 (17%), Positives = 101/280 (36%), Gaps = 28/280 (10%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS 248
++S + DG++ +W+ + + V V + P G+ G+DN ++ +
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 249 ESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHH 307
E + V ++I + GD C LW+ E + F+ + +
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 308 VQFNPIDKHILASCASDRSIILYDTR----------------ATVLSRNPDEYLRETKTS 351
+ P D + S A D S L+D R A N + + + +
Sbjct: 190 LSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 352 IHRI-PRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREY-VRALNATKLERVFA 409
R+ D L + + + + + G ++ +A K +R
Sbjct: 249 TCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
L GH + +SCL ++ + +G++D +K+WN
Sbjct: 308 ------LAGHDNRVSCLGVTDDGMA-VATGSWDSFLKIWN 340
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 437 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
+SGA D K+W++ C QT+ H+ +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDI 229
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 170 DGHKDGISCLAKHPTKLSTII-SGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
+ H + +SC+ P + II S +D VKVWNL + + H G++ V PDG
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPL 256
S S G D W +L+E H+ L
Sbjct: 205 SLCASGGKDGQAMLW--DLNEGKHLYTL 230
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSS 245
+SG++DG +++W+LT+ + + + H V V F D Q +S D TIK W++
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 134
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-----VQTYQAHDGHVRD 221
L GH ++ +A P I+S + D + +W LT + + H V D
Sbjct: 9 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 222 VCFLPDGSQFLSVGIDNTIKTW 243
V DG LS D T++ W
Sbjct: 69 VVISSDGQFALSGSWDGTLRLW 90
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 417 DGHKDGISCLAKHPTKLSTII-SGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
+ H + +SC+ P + II S +D VKVWNL + + H G++ + P
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 202
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQ--AHDGHVRDVCFLPDGSQ--FLSVGIDNTIKTWS 244
I+SG+ D +K+WN T C T Q +H V V F P+ S +S G D +K W+
Sbjct: 120 IVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 170 DGHKDGISCLAKHPTKLSTII-SGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
+ H + +SC+ P + II S +D VKVWNL + + H G++ V PDG
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPL 256
S S G D W +L+E H+ L
Sbjct: 228 SLCASGGKDGQAMLW--DLNEGKHLYTL 253
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSS 245
+SG++DG +++W+LT+ + + + H V V F D Q +S D TIK W++
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-----VQTYQAHDGHVRD 221
L GH ++ +A P I+S + D + +W LT + + H V D
Sbjct: 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 222 VCFLPDGSQFLSVGIDNTIKTW 243
V DG LS D T++ W
Sbjct: 92 VVISSDGQFALSGSWDGTLRLW 113
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 417 DGHKDGISCLAKHPTKLSTII-SGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
+ H + +SC+ P + II S +D VKVWNL + + H G++ + P
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 225
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQ--AHDGHVRDVCFLPDGSQ--FLSVGIDNTIKTWS 244
I+SG+ D +K+WN T C T Q +H V V F P+ S +S G D +K W+
Sbjct: 143 IVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIK 241
+SGA D K+W++ C QT+ H+ + +CF P+G+ F + D T +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 50/280 (17%), Positives = 101/280 (36%), Gaps = 28/280 (10%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS 248
++S + DG++ +W+ + + V V + P G+ G+DN ++ +
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 249 ESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHH 307
E + V ++I + GD C LW+ E + F+ + +
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 308 VQFNPIDKHILASCASDRSIILYDTR----------------ATVLSRNPDEYLRETKTS 351
+ P D + S A D S L+D R A N + + + +
Sbjct: 190 LSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 352 IHRI-PRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREY-VRALNATKLERVFA 409
R+ D L + + + + + G ++ +A K +R
Sbjct: 249 TCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
L GH + +SCL ++ + +G++D +K+WN
Sbjct: 308 ------LAGHDNRVSCLGVTDDGMA-VATGSWDSFLKIWN 340
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 437 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
+SGA D K+W++ C QT+ H+ +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDI 229
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIK 241
+SGA D K+W++ C QT+ H+ + +CF P+G+ F + D T +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/280 (17%), Positives = 101/280 (36%), Gaps = 28/280 (10%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS 248
++S + DG++ +W+ + + V V + P G+ G+DN ++ +
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 249 ESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHH 307
E + V ++I + GD C LW+ E + F+ + +
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 308 VQFNPIDKHILASCASDRSIILYDTR----------------ATVLSRNPDEYLRETKTS 351
+ P D + S A D S L+D R A N + + + +
Sbjct: 190 LSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 352 IHRI-PRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREY-VRALNATKLERVFA 409
R+ D L + + + + + G ++ +A K +R
Sbjct: 249 TCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
L GH + +SCL ++ + +G++D +K+WN
Sbjct: 308 ------LAGHDNRVSCLGVTDDGMA-VATGSWDSFLKIWN 340
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 437 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
+SGA D K+W++ C QT+ H+ +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDI 229
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIK 241
+SGA D K+W++ C QT+ H+ + +CF P+G+ F + D T +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 50/280 (17%), Positives = 101/280 (36%), Gaps = 28/280 (10%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS 248
++S + DG++ +W+ + + V V + P G+ G+DN ++ +
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 249 ESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHH 307
E + V ++I + GD C LW+ E + F+ + +
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 308 VQFNPIDKHILASCASDRSIILYDTR----------------ATVLSRNPDEYLRETKTS 351
+ P D + S A D S L+D R A N + + + +
Sbjct: 190 LSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 352 IHRI-PRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREY-VRALNATKLERVFA 409
R+ D L + + + + + G ++ +A K +R
Sbjct: 249 TCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
L GH + +SCL ++ + +G++D +K+WN
Sbjct: 308 ------LAGHDNRVSCLGVTDDGMA-VATGSWDSFLKIWN 340
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 437 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
+SGA D K+W++ C QT+ H+ +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDI 229
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIK 241
+SGA D K+W++ C QT+ H+ + +CF P+G+ F + D T +
Sbjct: 211 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 262
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/280 (17%), Positives = 101/280 (36%), Gaps = 28/280 (10%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS 248
++S + DG++ +W+ + + V V + P G+ G+DN ++ +
Sbjct: 81 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 140
Query: 249 ESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHH 307
E + V ++I + GD C LW+ E + F+ + +
Sbjct: 141 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 200
Query: 308 VQFNPIDKHILASCASDRSIILYDTR----------------ATVLSRNPDEYLRETKTS 351
+ P D + S A D S L+D R A N + + + +
Sbjct: 201 LSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 259
Query: 352 IHRI-PRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREY-VRALNATKLERVFA 409
R+ D L + + + + + G ++ +A K +R
Sbjct: 260 TCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 318
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
L GH + +SCL ++ + +G++D +K+WN
Sbjct: 319 ------LAGHDNRVSCLGVTDDGMA-VATGSWDSFLKIWN 351
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 437 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
+SGA D K+W++ C QT+ H+ +
Sbjct: 211 VSGACDASAKLWDVREGMCRQTFTGHESDI 240
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
Length = 367
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 79/213 (37%), Gaps = 48/213 (22%)
Query: 467 RDTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALE-----------TQFKGS 515
RD P + T + R F + S +QQ D QEL L D L + K +
Sbjct: 73 RDAHVAPRMFKTQVGR-FAPQFS-GYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDA 130
Query: 516 KTTGDQA--------------DLINNLYQGKMRDYVKCLECGTEKSREDTF--LDIPLPV 559
D +I + + G + + C EC D F L +PLP+
Sbjct: 131 NGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPL 190
Query: 560 R-------PF-------GSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGL 605
+ P ++VA D IE F ETL + ++C C K A K
Sbjct: 191 KKDRVMEGPMLQPQKKKKTTVALRDCIEL---FTTMETLGEHDPWYCPNCKKHQQATKKF 247
Query: 606 KFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
P +L +HL R F Y+ R KL+ VE
Sbjct: 248 DLWSLPKILVVHLKR--FSYNRYWRDKLDTVVE 278
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
pdb|3MHS|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|4FJC|A Chain A, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
pdb|4FJC|E Chain E, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
Length = 476
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 524 LINNLYQGKMRDYVKCLEC-GTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPE 582
+++ +++G + + C C K+ D FLD+ L ++ + E + +F + E
Sbjct: 279 IVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD------KKKLYECLDSFHKKE 332
Query: 583 TLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
L N Y C +C DA K L + P +L L L RF+ + +R KL+D +E
Sbjct: 333 QLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNR-KLDDFIE 386
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FIP|E Chain E, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FK5|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
Length = 476
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 524 LINNLYQGKMRDYVKCLEC-GTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPE 582
+++ +++G + + C C K+ D FLD+ L ++ + E + +F + E
Sbjct: 279 IVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD------KKKLYECLDSFHKKE 332
Query: 583 TLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
L N Y C +C DA K L + P +L L L RF+ + +R KL+D +E
Sbjct: 333 QLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNR-KLDDFIE 386
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
Length = 471
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 515 SKTTGDQAD-LINNLYQGKMRDYVKCLEC-GTEKSREDTFLDIPLPVRPFGSSVAYGDII 572
S+ Q + +++ +++G + + C C K+ D FLD+ L ++ +
Sbjct: 264 SRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD------KKKLY 317
Query: 573 EAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIK 632
E + +F + E L N Y C +C DA K L + P +L L L RF+ + +R K
Sbjct: 318 ECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNR-K 375
Query: 633 LNDKVE 638
L+D +E
Sbjct: 376 LDDFIE 381
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 166 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
+A L GH D +S + P + + TIIS D VK WNL + H+ ++
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNIN 200
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS 244
+ PDG+ S G D I W+
Sbjct: 201 TLTASPDGTLIASAGKDGEIXLWN 224
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP---- 226
GHK + + K S IISG+ D +KVW + Q C+ T H+ V V +P
Sbjct: 105 GHKSDVXSV-DIDKKASXIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKA 162
Query: 227 --DGSQFLSVGIDNTIKTWS 244
D +S G D +K W+
Sbjct: 163 DDDSVTIISAGNDKXVKAWN 182
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-----VQTYQAHDGHVRDVC 223
L+GH ++ LA + + ++S + D + W LT V++++ H V+D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 224 FLPDGSQFLSVGIDNTIKTWSSELSES 250
DG+ LS D T++ W E+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGET 99
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 144 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 203
G + V+A N + + A+ GH I+ L P + I S DGE+ +WNL
Sbjct: 173 GNDKXVKAWNLNQFQ------IEADFIGHNSNINTLTASPDG-TLIASAGKDGEIXLWNL 225
Query: 204 TSQSCVQTYQAHDGHVRDVCFLPD 227
++ T A D V + F P+
Sbjct: 226 AAKKAXYTLSAQD-EVFSLAFSPN 248
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
G + V+A N + + A+ GH I+ L P + I S DGE+ +WNL
Sbjct: 173 GNDKXVKAWNLNQFQ------IEADFIGHNSNINTLTASPDG-TLIASAGKDGEIXLWNL 225
Query: 451 TSQSCVQTYQAHD 463
++ T A D
Sbjct: 226 AAKKAXYTLSAQD 238
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 418 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
GHK + + K S IISG+ D +KVW + Q C+ T H+ V P
Sbjct: 105 GHKSDVXSV-DIDKKASXIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVP 158
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 413 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 467
+A L GH D +S + P + + TIIS D VK WNL + H+ ++
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNIN 200
Query: 468 DTSTRP 473
+ P
Sbjct: 201 TLTASP 206
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
+S ++D +++W++ + Q + H V V S +S D TIK W+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWT 135
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 166 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
+A L GH D +S + P + + TIIS D VK WNL + H+ ++
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS 244
+ PDG+ S G D I W+
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWN 224
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP---- 226
GHK + + K S IISG+ D +KVW + Q C+ T H+ V V +P
Sbjct: 105 GHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKA 162
Query: 227 --DGSQFLSVGIDNTIKTWS 244
D +S G D +K W+
Sbjct: 163 DDDSVTIISAGNDKMVKAWN 182
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-----VQTYQAHDGHVRD 221
L+GH ++ LA + + ++S + D + W LT V++++ H V+D
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 222 VCFLPDGSQFLSVGIDNTIKTWSSELSES 250
DG+ LS D T++ W E+
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGET 99
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 144 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 203
G + V+A N + + A+ GH I+ L P + I S DGE+ +WNL
Sbjct: 173 GNDKMVKAWNLNQFQ------IEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNL 225
Query: 204 TSQSCVQTYQAHDGHVRDVCFLPD 227
++ + T A D V + F P+
Sbjct: 226 AAKKAMYTLSAQD-EVFSLAFSPN 248
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
G + V+A N + + A+ GH I+ L P + I S DGE+ +WNL
Sbjct: 173 GNDKMVKAWNLNQFQ------IEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNL 225
Query: 451 TSQSCVQTYQAHD 463
++ + T A D
Sbjct: 226 AAKKAMYTLSAQD 238
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 418 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
GHK + + K S IISG+ D +KVW + Q C+ T H+ V P
Sbjct: 105 GHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVP 158
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 413 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 467
+A L GH D +S + P + + TIIS D VK WNL + H+ ++
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 468 DTSTRP 473
+ P
Sbjct: 201 TLTASP 206
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
+S ++D +++W++ + Q + H V V S +S D TIK W+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDV 222
+ V L GH+ I L P+ ++SG+ D V++W+L + C T DG V V
Sbjct: 155 RKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTV 212
Query: 223 CFLPDGSQFLSVG-IDNTIKTWSSE 246
P ++++ G +D ++ W SE
Sbjct: 213 AVSPGDGKYIAAGSLDRAVRVWDSE 237
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW 243
+ +GA D +++W++ ++ V Q H+ + + + P G + +S D T++ W
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ-------TYQAHDGHVRDVCFL 225
+DG++ +A P I +G+ D V+VW+ + V+ + H V V F
Sbjct: 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265
Query: 226 PDGSQFLSVGIDNTIKTWS 244
DG +S +D ++K W+
Sbjct: 266 RDGQSVVSGSLDRSVKLWN 284
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Query: 214 AHDGHVRDVCFLPDGSQFLSVGI-DNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQR 272
+ D ++R VCF PDG +FL+ G D I+ W E+ IV +
Sbjct: 121 SSDLYIRSVCFSPDG-KFLATGAEDRLIRIWD---IENRKIVMILQGHEQDIYSLDYFPS 176
Query: 273 KSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
K+ + GD+ ++W+ + S D + V +P D +A+ + DR++ ++D
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Query: 332 TRATVL 337
+ L
Sbjct: 236 SETGFL 241
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG 464
+ V L GH+ I L P+ ++SG+ D V++W+L + C T DG
Sbjct: 155 RKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 208
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 17/140 (12%)
Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL------------TSQSCVQTYQAHDGH 218
GHKD + + +++SG+ D VK+WNL S +C TY H
Sbjct: 254 GHKDSVYSVV-FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 219 VRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSK--I 276
V V + LS D + W + ++ H + +
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372
Query: 277 FATCGDQCQ--LWEHERNEP 294
FAT C+ +W++++ P
Sbjct: 373 FATGSGDCKARIWKYKKIAP 392
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 166 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
+A L GH D +S + P + + TIIS D VK WNL + H+ ++
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS 244
+ PDG+ S G D I W+
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWN 224
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP---- 226
GHK + + K S IISG+ D +KVW + Q C+ T H+ V V +P
Sbjct: 105 GHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKA 162
Query: 227 --DGSQFLSVGIDNTIKTWS 244
D +S G D +K W+
Sbjct: 163 DDDSVTIISAGNDKMVKAWN 182
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-----VQTYQAHDGHVRD 221
L+GH ++ LA + + ++S + D + W LT V++++ H V+D
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 222 VCFLPDGSQFLSVGIDNTIKTWSSELSES 250
DG+ LS D T++ W E+
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGET 99
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 144 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 203
G + V+A N + + A+ GH I+ L P + I S DGE+ +WNL
Sbjct: 173 GNDKMVKAWNLNQFQ------IEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNL 225
Query: 204 TSQSCVQTYQAHDGHVRDVCFLPD 227
++ + T A D V + F P+
Sbjct: 226 AAKKAMYTLSAQD-EVFSLAFSPN 248
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
G + V+A N + + A+ GH I+ L P + I S DGE+ +WNL
Sbjct: 173 GNDKMVKAWNLNQFQ------IEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNL 225
Query: 451 TSQSCVQTYQAHD 463
++ + T A D
Sbjct: 226 AAKKAMYTLSAQD 238
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 418 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
GHK + + K S IISG+ D +KVW + Q C+ T H+ V P
Sbjct: 105 GHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVP 158
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
+S ++D +++W++ + Q + H V V S +S D TIK W+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 413 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 467
+A L GH D +S + P + + TIIS D VK WNL + H+ ++
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 468 DTSTRP 473
+ P
Sbjct: 201 TLTASP 206
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 166 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
+A L GH D +S + P + + TIIS D VK WNL + H+ ++
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS 244
+ PDG+ S G D I W+
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWN 224
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP---- 226
GHK + + K S IISG+ D +KVW + Q C+ T H+ V V +P
Sbjct: 105 GHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKA 162
Query: 227 --DGSQFLSVGIDNTIKTWS 244
D +S G D +K W+
Sbjct: 163 DDDSVTIISAGNDKMVKAWN 182
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-----VQTYQAHDGHVRD 221
L+GH ++ LA + + ++S + D + W LT V++++ H V+D
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 222 VCFLPDGSQFLSVGIDNTIKTWSSELSES 250
DG+ LS D T++ W E+
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGET 99
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 144 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 203
G + V+A N + + A+ GH I+ L P + I S DGE+ +WNL
Sbjct: 173 GNDKMVKAWNLNQFQ------IEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNL 225
Query: 204 TSQSCVQTYQAHDGHVRDVCFLPD 227
++ + T A D V + F P+
Sbjct: 226 AAKKAMYTLSAQD-EVFSLAFSPN 248
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
G + V+A N + + A+ GH I+ L P + I S DGE+ +WNL
Sbjct: 173 GNDKMVKAWNLNQFQ------IEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNL 225
Query: 451 TSQSCVQTYQAHD 463
++ + T A D
Sbjct: 226 AAKKAMYTLSAQD 238
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 418 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
GHK + + K S IISG+ D +KVW + Q C+ T H+ V P
Sbjct: 105 GHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVP 158
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
+S ++D +++W++ + Q + H V V S +S D TIK W+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 413 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 467
+A L GH D +S + P + + TIIS D VK WNL + H+ ++
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 468 DTSTRP 473
+ P
Sbjct: 201 TLTASP 206
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 166 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
+A L GH D +S + P + + TIIS D VK WNL + H+ ++
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS 244
+ PDG+ S G D I W+
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWN 224
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP---- 226
GHK + + K S IISG+ D +KVW + Q C+ T H+ V V +P
Sbjct: 105 GHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKA 162
Query: 227 --DGSQFLSVGIDNTIKTWS 244
D +S G D +K W+
Sbjct: 163 DDDSVTIISAGNDKMVKAWN 182
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-----VQTYQAHDGHVRD 221
L+GH ++ LA + + ++S + D + W LT V++++ H V+D
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 222 VCFLPDGSQFLSVGIDNTIKTWSSELSES 250
DG+ LS D T++ W E+
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGET 99
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 144 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 203
G + V+A N + + A+ GH I+ L P + I S DGE+ +WNL
Sbjct: 173 GNDKMVKAWNLNQFQ------IEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNL 225
Query: 204 TSQSCVQTYQAHDGHVRDVCFLPD 227
++ + T A D V + F P+
Sbjct: 226 AAKKAMYTLSAQD-EVFSLAFSPN 248
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
G + V+A N + + A+ GH I+ L P + I S DGE+ +WNL
Sbjct: 173 GNDKMVKAWNLNQFQ------IEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNL 225
Query: 451 TSQSCVQTYQAHD 463
++ + T A D
Sbjct: 226 AAKKAMYTLSAQD 238
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 418 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
GHK + + K S IISG+ D +KVW + Q C+ T H+ V P
Sbjct: 105 GHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVP 158
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 413 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 467
+A L GH D +S + P + + TIIS D VK WNL + H+ ++
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 468 DTSTRP 473
+ P
Sbjct: 201 TLTASP 206
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
+S ++D +++W++ + Q + H V V S +S D TIK W+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 166 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
+A L GH D +S + P + + TIIS D VK WNL + H+ ++
Sbjct: 135 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 194
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS 244
+ PDG+ S G D I W+
Sbjct: 195 TLTASPDGTLIASAGKDGEIMLWN 218
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP---- 226
GHK + + K S IISG+ D +KVW + Q C+ T H+ V V +P
Sbjct: 99 GHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKA 156
Query: 227 --DGSQFLSVGIDNTIKTWS 244
D +S G D +K W+
Sbjct: 157 DDDSVTIISAGNDKMVKAWN 176
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-----VQTYQAHDGHVRD 221
L+GH ++ LA + + ++S + D + W LT V++++ H V+D
Sbjct: 5 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 222 VCFLPDGSQFLSVGIDNTIKTWSSELSES 250
DG+ LS D T++ W E+
Sbjct: 65 CTLTADGAYALSASWDKTLRLWDVATGET 93
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 144 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 203
G + V+A N + + A+ GH I+ L P + I S DGE+ +WNL
Sbjct: 167 GNDKMVKAWNLNQFQ------IEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNL 219
Query: 204 TSQSCVQTYQAHDGHVRDVCFLPD 227
++ + T A D V + F P+
Sbjct: 220 AAKKAMYTLSAQD-EVFSLAFSPN 242
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
G + V+A N + + A+ GH I+ L P + I S DGE+ +WNL
Sbjct: 167 GNDKMVKAWNLNQFQ------IEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNL 219
Query: 451 TSQSCVQTYQAHD 463
++ + T A D
Sbjct: 220 AAKKAMYTLSAQD 232
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 418 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
GHK + + K S IISG+ D +KVW + Q C+ T H+ V P
Sbjct: 99 GHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVP 152
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 413 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 467
+A L GH D +S + P + + TIIS D VK WNL + H+ ++
Sbjct: 135 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 194
Query: 468 DTSTRP 473
+ P
Sbjct: 195 TLTASP 200
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
+S ++D +++W++ + Q + H V V S +S D TIK W+
Sbjct: 75 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 129
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 195 DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW 243
DG + VW+L +Q+ V+ +Q H + DG++ + G+DNT+++W
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 165 FVANLDGHKDGISC--LAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD--GHVR 220
V GH DG SC ++ TKL T G D V+ W+L + Q HD +
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWT---GGLDNTVRSWDLREG---RQLQQHDFTSQIF 228
Query: 221 DVCFLPDGSQFLSVGIDNT 239
+ + P G ++L+VG++++
Sbjct: 229 SLGYCPTG-EWLAVGMESS 246
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD-GSQFLSVGIDNTIKTW 243
+SG D VKVW+L+ ++ +++Y AH V V P + FLS G D I W
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 437 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLT 481
+SG D VKVW+L+ ++ +++Y AH V + P +T L+
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLS 199
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQ----AHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
I+ + G V++W + + + + HD V+ + DG+Q +S G D ++K W
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW- 166
Query: 245 SELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQ--LWEHERNEP 294
+LS+ ++ + K IF +CG+ + LW+ + +P
Sbjct: 167 -DLSQK-AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP 216
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 6/155 (3%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSELS 248
+SG+ D +KVW+L Q + +Y+AH V V P S FLS DN I W +
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202
Query: 249 ESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQ---CQLWEHERNEPIRAFSWNVDSL 305
+ + + H ++S++F GD+ L + + + + + + +
Sbjct: 203 KPASQIGC-SAPGYLPTSLAWHPQQSEVFVF-GDENGTVSLVDTKSTSCVLSSAVHSQCV 260
Query: 306 HHVQFNPIDKHILASCASDRSIILYDTRATVLSRN 340
+ F+P LAS + D S+ + D+ + L R+
Sbjct: 261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS 295
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 437 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
+SG+ D +KVW+L Q + +Y+AH V + P
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW 243
+IS + D ++K+W++ S +T H V D+ + G LS +D TI+ W
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 23/134 (17%)
Query: 134 NIDPSLHPFE-------GPREYVRALNATKLERVFAKPFVANLDGH--------KDGISC 178
N+D +L+ + G V A E+V + + A LDGH +DG
Sbjct: 31 NVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM 90
Query: 179 LAKH--------PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
L + ++ I G +G++KV + + QAH + + F P G
Sbjct: 91 LKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEA 150
Query: 231 FLSVGIDNTIKTWS 244
+S D +K WS
Sbjct: 151 LISSSQDMQLKIWS 164
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW 243
+IS + D ++K+W++ S +T H V D+ + G LS +D TI+ W
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 23/134 (17%)
Query: 134 NIDPSLHPFE-------GPREYVRALNATKLERVFAKPFVANLDGH--------KDGISC 178
N+D +L+ + G V A E+V + + A LDGH +DG
Sbjct: 34 NVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM 93
Query: 179 LAKH--------PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
L + ++ I G +G++KV + + QAH + + F P G
Sbjct: 94 LKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEA 153
Query: 231 FLSVGIDNTIKTWS 244
+S D +K WS
Sbjct: 154 LISSSQDMQLKIWS 167
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 26/190 (13%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS--CVQTYQAHDGHVRDVC 223
V+ L+ H + + HP++ + S +YD VK++ C T + H+ V +
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 224 FLPDGSQFLSVGIDNTIKTWSSELSESDH-------------IVPLHTXXXXXXXXXXXH 270
F P G + S D T++ W L ++ I L
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261
Query: 271 QRKSKIFATCGDQC-QLWEHERN----EPIRAFSWNVDSLHH-----VQFNPIDKHILAS 320
Q + CGD ++++ + N +P + + ++ H V +NP + +LAS
Sbjct: 262 QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321
Query: 321 CASDRSIILY 330
C+ D + +
Sbjct: 322 CSDDGEVAFW 331
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 113/293 (38%), Gaps = 33/293 (11%)
Query: 170 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVW--NLTSQSCVQTYQAHDGHVRDVCFLPD 227
+GH+ + +A P + + S ++D +W N CV T + H+ V+ V + P
Sbjct: 58 EGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS 116
Query: 228 GSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIF-ATCGDQCQL 286
G+ + D ++ W + + V + H + + A+ D +L
Sbjct: 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176
Query: 287 WEHERNEPI--RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILY-------DTRATVL 337
+ E ++ + + ++ + F+P + LASC+ DR++ ++ +
Sbjct: 177 YREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIWRQYLPGNEQGVACS 235
Query: 338 SRNPDEYLRETKTSIHRIPRNI-DPSLHPFEGPREYVRALNATKLERVFAK-PFVGPREY 395
+P T + H R I D + G +A RVF + P P++
Sbjct: 236 GSDPSWKCICTLSGFHS--RTIYDIAWCQLTGALATACGDDAI---RVFQEDPNSDPQQP 290
Query: 396 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVW 448
+L A + H ++C+A +P + + S + DGEV W
Sbjct: 291 TFSLTAHLHQ------------AHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP 226
NL G ++ + P++ IISG+ D V ++ T+ H V V + P
Sbjct: 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200
Query: 227 DGSQFLSVGIDNTI 240
DGS F S G D TI
Sbjct: 201 DGSLFASTGGDGTI 214
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 214 AHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
AH G V + + PDG++ S D TIK W+ + + +P+ T
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 281
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 166 VANLDGHKDGI-----SCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
+ LDGH I C K+ ++G+ D +K+W++++ CV T+++ V+
Sbjct: 67 LGTLDGHTGTIWSIDVDCFTKY------CVTGSADYSIKLWDVSNGQCVATWKS-PVPVK 119
Query: 221 DVCFLPDGSQFLSVGIDNTIK 241
V F P G+ FL++ +DN +K
Sbjct: 120 RVEFSPCGNYFLAI-LDNVMK 139
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE 249
IS + DG +K+ + + ++TY+ H+ V + LP+G +S G D T++ WS E
Sbjct: 199 ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS 257
Query: 250 SDHIVPL 256
++ L
Sbjct: 258 LKQVITL 264
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 152 LNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 211
+N L + + L GH+ + L+ +ISG++D KVW S V
Sbjct: 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQD---GVVISGSWDKTAKVWK--EGSLVYN 137
Query: 212 YQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSE 246
QAH+ V D + ++FL+ D TIK W ++
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND 173
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 399 LNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 458
+N L + + L GH+ + L+ +ISG++D KVW S V
Sbjct: 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQD---GVVISGSWDKTAKVWK--EGSLVYN 137
Query: 459 YQAHDGHVRDTSTRPAVETTDLTRS 483
QAH+ V D E LT S
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTAS 162
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-VQTYQAHDGHVRDVCF 224
+ +L G + + C+ +HP + + +G DG + +W++ + V +AH+ + +V F
Sbjct: 229 ILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF 288
Query: 225 LPDGSQFL 232
P + L
Sbjct: 289 HPSNPEHL 296
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-VQTYQAHDGHVRDTST 471
+ +L G + + C+ +HP + + +G DG + +W++ + V +AH+ + +
Sbjct: 229 ILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF 288
Query: 472 RPA 474
P+
Sbjct: 289 HPS 291
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 19/190 (10%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-------SCVQTYQAHDGHVRD 221
L GH+ L+ +P ++S + D + +W++++ + H V D
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 222 VCF-LPDGSQFLSVGIDNTIKTW---SSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIF 277
V + L S F SV D + W S+ S+ H V HT + I
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF---IL 289
Query: 278 AT--CGDQCQLWEHERNEPIR--AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR 333
AT LW+ RN ++ +F + D + VQ++P ++ ILAS +DR + ++D
Sbjct: 290 ATGSADKTVALWDL-RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Query: 334 ATVLSRNPDE 343
++P++
Sbjct: 349 KIGEEQSPED 358
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-VQTYQAHDGHVRDVCFLP 226
++D H ++CL+ +P + +G+ D V +W+L + + ++++H + V + P
Sbjct: 268 SVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 327
Query: 227 DGSQFL-SVGIDNTIKTW 243
L S G D + W
Sbjct: 328 HNETILASSGTDRRLNVW 345
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 270 HQRKSKIFATCGDQCQL--WEHERN---EPIRAFSWNVDSLHHVQFNPIDKHILASCASD 324
H +F + D +L W+ N +P + + ++ + FNP + ILA+ ++D
Sbjct: 236 HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 295
Query: 325 RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRN 358
+++ L+D R L + E ++ + P N
Sbjct: 296 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 329
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-------SCVQTYQAHDGHVRD 221
L GH+ L+ +P ++S + D + +W++ + + H V D
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 222 VCF-LPDGSQFLSVGIDNTIKTW---SSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIF 277
V + L S F SV D + W ++ S+ H V HT + I
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF---IL 293
Query: 278 AT--CGDQCQLWEHERNEPIR--AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
AT LW+ RN ++ +F + D + VQ++P ++ ILAS +DR + ++D
Sbjct: 294 ATGSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 26/229 (11%)
Query: 231 FLSVGIDNTIKTWSSELSESDHIV----PLHTXXXXXXXXXXXHQRKSKIFATCGDQCQL 286
LS D+TI W + +H V + T H +F + D +L
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 287 --WEHERN---EPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNP 341
W+ N +P + ++ + FNP + ILA+ ++D+++ L+D R L +
Sbjct: 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316
Query: 342 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA 401
E ++ + P N R +V L+ E+ GP E +
Sbjct: 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL----- 371
Query: 402 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
F+ GH IS + +P + I S + D ++VW +
Sbjct: 372 ----------FIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-------SCVQTYQAHDGHVRD 221
L GH+ L+ +P ++S + D + +W++ + + H V D
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 222 VCF-LPDGSQFLSVGIDNTIKTW---SSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIF 277
V + L S F SV D + W ++ S+ H V HT + I
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF---IL 297
Query: 278 AT--CGDQCQLWEHERNEPIR--AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
AT LW+ RN ++ +F + D + VQ++P ++ ILAS +DR + ++D
Sbjct: 298 ATGSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 26/230 (11%)
Query: 231 FLSVGIDNTIKTWSSELSESDHIV----PLHTXXXXXXXXXXXHQRKSKIFATCGDQCQL 286
LS D+TI W + +H V + T H +F + D +L
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 287 --WEHERN---EPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNP 341
W+ N +P + ++ + FNP + ILA+ ++D+++ L+D R L +
Sbjct: 261 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 320
Query: 342 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA 401
E ++ + P N R +V L+ E+ GP E +
Sbjct: 321 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL----- 375
Query: 402 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT 451
F+ GH IS + +P + I S + D ++VW +
Sbjct: 376 ----------FIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 413
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-------SCVQTYQAHDGHVRD 221
L GH+ L+ +P ++S + D + +W++ + + H V D
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 222 VCF-LPDGSQFLSVGIDNTIKTW---SSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIF 277
V + L S F SV D + W ++ S+ H V HT + I
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF---IL 295
Query: 278 AT--CGDQCQLWEHERNEPIR--AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
AT LW+ RN ++ +F + D + VQ++P ++ ILAS +DR + ++D
Sbjct: 296 ATGSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 26/229 (11%)
Query: 231 FLSVGIDNTIKTWSSELSESDHIV----PLHTXXXXXXXXXXXHQRKSKIFATCGDQCQL 286
LS D+TI W + +H V + T H +F + D +L
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 287 --WEHERN---EPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNP 341
W+ N +P + ++ + FNP + ILA+ ++D+++ L+D R L +
Sbjct: 259 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 318
Query: 342 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA 401
E ++ + P N R +V L+ E+ GP E +
Sbjct: 319 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL----- 373
Query: 402 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
F+ GH IS + +P + I S + D ++VW +
Sbjct: 374 ----------FIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 216 DGHVRDVCFL---PDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQR 272
GH ++VC L PDG S G DN + W S E VPL T HQ
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-WVPLQT--------FTQHQG 288
Query: 273 KSKIFATC 280
K A C
Sbjct: 289 AVKAVAWC 296
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 161 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC----VQTYQAHD 216
A+ VA L GH + L P + SG D V VW +QT+ H
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 287
Query: 217 GHVRDVCFLPDGSQFLSVG---IDNTIKTWS 244
G V+ V + P S L+ G D I+ W+
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 318
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 192 GAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW 243
G ++ +W + + V + H V + PDG+ S D T++ W
Sbjct: 351 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 216 DGHVRDVCFL---PDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQR 272
GH ++VC L PDG S G DN + W S E VPL T HQ
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-WVPLQT--------FTQHQG 277
Query: 273 KSKIFATC 280
K A C
Sbjct: 278 AVKAVAWC 285
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 161 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC----VQTYQAHD 216
A+ VA L GH + L P + SG D V VW +QT+ H
Sbjct: 218 VAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276
Query: 217 GHVRDVCFLPDGSQFLSVG---IDNTIKTWS 244
G V+ V + P S L+ G D I+ W+
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 192 GAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW 243
G ++ +W + + V + H V + PDG+ S D T++ W
Sbjct: 340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ---AHDGHVRDVCF 224
NL HK ++ +A +P + + + D VK+W+L ++ H V CF
Sbjct: 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF 304
Query: 225 LPDGSQFLSVGIDNTIKTWSSE 246
PDG++ L+ + I+ +S+
Sbjct: 305 SPDGARLLTTDQKSEIRVYSAS 326
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 19/85 (22%)
Query: 385 FAKPFVGP--REYVRALNATKLERV--------FAKPFVANLDGHK---------DGISC 425
A P + P R VR L+ KL R + F+ LD ++ +
Sbjct: 65 LAGPQILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATS 124
Query: 426 LAKHPTKLSTIISGAYDGEVKVWNL 450
LA HPT ST+ G+ G++ +WN
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNF 149
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 146 REYVRALNATKLERV--------FAKPFVANLDGHK---------DGISCLAKHPTKLST 188
R VR L+ KL R + F+ LD ++ + LA HPT ST
Sbjct: 75 RSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPST 134
Query: 189 IISGAYDGEVKVWNL 203
+ G+ G++ +WN
Sbjct: 135 VAVGSKGGDIMLWNF 149
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ---AHDGHVRDVCF 224
NL HK ++ +A +P + + + D VK+W+L ++ H V CF
Sbjct: 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF 304
Query: 225 LPDGSQFLSVGIDNTIKTWSSE 246
PDG++ L+ + I+ +S+
Sbjct: 305 SPDGARLLTTDQKSEIRVYSAS 326
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 19/85 (22%)
Query: 385 FAKPFVGP--REYVRALNATKLERV--------FAKPFVANLDGHK---------DGISC 425
A P + P R VR L+ KL R + F+ LD ++ +
Sbjct: 65 LAGPQILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATS 124
Query: 426 LAKHPTKLSTIISGAYDGEVKVWNL 450
LA HPT ST+ G+ G++ +WN
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNF 149
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 146 REYVRALNATKLERV--------FAKPFVANLDGHK---------DGISCLAKHPTKLST 188
R VR L+ KL R + F+ LD ++ + LA HPT ST
Sbjct: 75 RSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPST 134
Query: 189 IISGAYDGEVKVWNL 203
+ G+ G++ +WN
Sbjct: 135 VAVGSKGGDIMLWNF 149
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 211
V L+GH + +A HPT + ++S D + VW++ + + V T
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLT 169
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 458
V L+GH + +A HPT + ++S D + VW++ + + V T
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLT 169
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ-------TYQAHDGH 218
V + GH + +A P + I SG+ D V VW + V T + H
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 219 VRDVCFLPDGSQ-FLSVGIDNTIKTW 243
V V + P LS G DN I W
Sbjct: 134 VGIVAWHPTAQNVLLSAGXDNVILVW 159
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ---AHDGHVRDVCF 224
NL HK ++ +A +P + + + D VK+W+L ++ H V CF
Sbjct: 246 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF 305
Query: 225 LPDGSQFLSVGIDNTIKTWSSE 246
PDG++ L+ + I+ +S+
Sbjct: 306 SPDGARLLTTDQKSEIRVYSAS 327
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 19/85 (22%)
Query: 385 FAKPFVGP--REYVRALNATKLERV--------FAKPFVANLDGHK---------DGISC 425
A P + P R VR L+ KL R + F+ LD ++ +
Sbjct: 66 LAGPQILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATS 125
Query: 426 LAKHPTKLSTIISGAYDGEVKVWNL 450
LA HPT ST+ G+ G++ +WN
Sbjct: 126 LAWHPTHPSTVAVGSKGGDIMLWNF 150
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 146 REYVRALNATKLERV--------FAKPFVANLDGHK---------DGISCLAKHPTKLST 188
R VR L+ KL R + F+ LD ++ + LA HPT ST
Sbjct: 76 RSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPST 135
Query: 189 IISGAYDGEVKVWNL 203
+ G+ G++ +WN
Sbjct: 136 VAVGSKGGDIMLWNF 150
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 12/67 (17%)
Query: 217 GHVRDVCFL---PDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRK 273
GH ++VC L PDG S G DN + W S E VPL T HQ
Sbjct: 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-WVPLQT--------FTQHQGA 198
Query: 274 SKIFATC 280
K A C
Sbjct: 199 VKAVAWC 205
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 161 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVW----NLTSQSCVQTYQAHD 216
A+ VA L GH + L P + SG D V VW +QT+ H
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196
Query: 217 GHVRDVCFLPDGSQFLSVG---IDNTIKTWS 244
G V+ V + P S L+ G D I+ W+
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-VQTYQAHDGHVRDVCFLPD 227
+D H ++CL+ +P + +G+ D V +W+L + + T+++H + V + P
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH 330
Query: 228 GSQFL-SVGIDNTIKTW 243
L S G D + W
Sbjct: 331 NETILASSGTDRRLNVW 347
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 74/187 (39%), Gaps = 22/187 (11%)
Query: 270 HQRKSKIFATCGDQCQL--WEHERN---EPIRAFSWNVDSLHHVQFNPIDKHILASCASD 324
H +F + D +L W+ N +P + ++ + FNP + ILA+ ++D
Sbjct: 238 HLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSAD 297
Query: 325 RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERV 384
+++ L+D R L + E ++ +H P N ++ G R LN L +
Sbjct: 298 KTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHN--ETILASSGTD---RRLNVWDLSK- 351
Query: 385 FAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGE 444
+G + E +F GH IS + +P + I S + D
Sbjct: 352 -----IGEEQSAEDAEDGPPELLFIH------GGHTAKISDFSWNPNEPWVICSVSEDNI 400
Query: 445 VKVWNLT 451
+++W +
Sbjct: 401 MQIWQMA 407
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 21/179 (11%)
Query: 161 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
+ + +NL GH +S H L I +G +G++ + H V
Sbjct: 183 YGLSWNSNLSGHL--LSASDDHTVCLWDINAGPKEGKI-------VDAKAIFTGHSAVVE 233
Query: 221 DVCF-LPDGSQFLSVGIDNTIKTW---SSELSESDHIVPLHTXXXXXXXXXXXHQRKSKI 276
DV + L S F SV D + W S+ S+ H+V HT + I
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF---I 290
Query: 277 FAT--CGDQCQLWEHERNEPIR--AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
AT LW+ RN ++ F + D + V ++P ++ ILAS +DR + ++D
Sbjct: 291 LATGSADKTVALWD-LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-VQTYQAHDGHVRDVCFLPD 227
+D H ++CL+ +P + +G+ D V +W+L + + T+++H + V + P
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH 330
Query: 228 GSQFL-SVGIDNTIKTW 243
L S G D + W
Sbjct: 331 NETILASSGTDRRLNVW 347
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 270 HQRKSKIFATCGDQCQL--WEHERN---EPIRAFSWNVDSLHHVQFNPIDKHILASCASD 324
H +F + D +L W+ N +P + ++ + FNP + ILA+ ++D
Sbjct: 238 HLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSAD 297
Query: 325 RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRN 358
+++ L+D R L + E ++ +H P N
Sbjct: 298 KTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHN 331
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 21/179 (11%)
Query: 161 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
+ + +NL GH +S H L I +G +G++ + H V
Sbjct: 183 YGLSWNSNLSGHL--LSASDDHTVCLWDINAGPKEGKI-------VDAKAIFTGHSAVVE 233
Query: 221 DVCF-LPDGSQFLSVGIDNTIKTW---SSELSESDHIVPLHTXXXXXXXXXXXHQRKSKI 276
DV + L S F SV D + W S+ S+ H+V HT + I
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF---I 290
Query: 277 FAT--CGDQCQLWEHERNEPIR--AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
AT LW+ RN ++ F + D + V ++P ++ ILAS +DR + ++D
Sbjct: 291 LATGSADKTVALWD-LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Length = 854
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 2 TCYLNSLIQALFMTPEF-RNAVYKWK--YENDIAEETS-ITYQLQKLFVNLQTS--TRPA 55
+CYLNS++Q LF P+F R V K + ++N + T + Q+ KL L + ++P
Sbjct: 353 SCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPV 412
Query: 56 VETTDLTRSFGWESSDAWQQHDIQE-LCRVLFDALETQFKGSKTTGDQAD-------LIN 107
E+ D R +Q ++Q+ + +F AL + +T Q D LIN
Sbjct: 413 PESGDGER--------VPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLIN 464
Query: 108 NLYQVL--SRNPDEYLR 122
+ + S NP+E R
Sbjct: 465 MVERNCRSSENPNEVFR 481
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase
6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A
Resolution
Length = 415
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWK----YENDIAEETSITYQL----QKLFVNLQT--- 50
TCYLN+ +QAL+ + R+ + + N A++ I Q+ ++ F NLQ
Sbjct: 33 TCYLNATLQALYRVNDLRDXILNYNPSQGVSNSGAQDEEIHKQIVIEXKRCFENLQNKSF 92
Query: 51 -STRPAVETTDLTR---SFGWESSDA--WQQHDIQELCRVLFDALETQFKGSKTTGD 101
S P V L + F S ++Q D +EL LF + F G K + D
Sbjct: 93 KSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSXSIVF-GDKFSED 148
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 211
V L+GH + +A HPT + ++S D + VW++ + + V T
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLT 169
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 458
V L+GH + +A HPT + ++S D + VW++ + + V T
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLT 169
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ-------TYQAHDGHVRDVC 223
GH + +A P + I SG+ D V VW + V T + H V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 224 FLPDGSQ-FLSVGIDNTIKTW 243
+ P LS G DN I W
Sbjct: 139 WHPTAQNVLLSAGCDNVILVW 159
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 176 ISCLA-KHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSV 234
++CLA H ++I++G +GE+++WN T + + H + V + DG+ +S+
Sbjct: 111 VTCLAWSHDG--NSIVTGVENGELRLWNKTG-ALLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 235 GIDNTIKTWS 244
++N W+
Sbjct: 168 DVENVTILWN 177
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL-TSQSCVQTYQAHDGHVRDVCFLPD 227
+ GH+ + CL+ + LS SG+ G + ++ + + T Q H V + + D
Sbjct: 172 MAGHQARVGCLSWNRHVLS---SGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD 228
Query: 228 GSQFLSVGIDNTIKTWSSELS 248
G Q S G DN ++ W + S
Sbjct: 229 GLQLASGGNDNVVQIWDARSS 249
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 15/76 (19%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD- 227
+ GH GI+ L +P +ISG+YDG + W+ +S H H + L +
Sbjct: 335 ISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNS 381
Query: 228 -GSQFLSVGIDNTIKT 242
++ S+ D+T+K
Sbjct: 382 KAQEYSSISWDDTLKV 397
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 416 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS 452
+ GH GI+ L +P +ISG+YDG + W+ +S
Sbjct: 335 ISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS 366
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIK 241
+ SGA DG + ++++ + + T + H +R + F PD ++ D IK
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 201 WNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTI 240
W++ +++CV T+ H V V + +GS+ +SVG D I
Sbjct: 275 WDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEI 314
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L+GH I L P +++ + DG +K++++ + T H V +V F PD
Sbjct: 202 LEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260
Query: 229 SQF 231
+ F
Sbjct: 261 THF 263
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 171 GHKDGISCLAKHP---TKLSTIISGAYDGEVKVWNL-TSQSCVQTYQAHDGHVRDVCFL- 225
G K +S + HP T+++T D + +W+L + + +QT + GH + + L
Sbjct: 212 GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL--NQGHQKGILSLD 269
Query: 226 ---PDGSQFLSVGIDNTIKTWSSELSE 249
D LS G DNT+ W+ E +E
Sbjct: 270 WCHQDEHLLLSSGRDNTVLLWNPESAE 296
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 82/223 (36%), Gaps = 28/223 (12%)
Query: 237 DNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEHERNEPIR 296
D++++ WS L +D P+ + +KI A D L + NE
Sbjct: 44 DSSLELWS--LLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN 101
Query: 297 A------FSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKT 350
A FS + S+ V+FN ++LAS ++ I ++D + +P Y
Sbjct: 102 AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK--CTESPSNY------ 153
Query: 351 SIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAK 410
P S+ + E + L VFA G + + + V
Sbjct: 154 ----TPLTPGQSMSSVD---EVISLAWNQSLAHVFAS--AGSSNFASIWDLKAKKEVIHL 204
Query: 411 PFVANLDGHKDGISCLAKHP---TKLSTIISGAYDGEVKVWNL 450
+ + G K +S + HP T+++T D + +W+L
Sbjct: 205 SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVW 201
+ GH GI+ L +P +ISG+YDG + W
Sbjct: 335 ISGHNKGITALTVNP-----LISGSYDGRIXEW 362
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 416 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVW 448
+ GH GI+ L +P +ISG+YDG + W
Sbjct: 335 ISGHNKGITALTVNP-----LISGSYDGRIXEW 362
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 148 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS 207
++R+L + KL R A PF ++ L HPT +T+ G+ G++ +W+ Q+
Sbjct: 56 FIRSLKSYKLHRT-ASPFDRR-------VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN 107
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 395 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS 454
++R+L + KL R A PF ++ L HPT +T+ G+ G++ +W+ Q+
Sbjct: 56 FIRSLKSYKLHRT-ASPFDRR-------VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN 107
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 148 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS 207
++R+L + KL R A PF ++ L HPT +T+ G+ G++ +W+ Q+
Sbjct: 55 FIRSLKSYKLHRT-ASPFDRR-------VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN 106
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 395 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS 454
++R+L + KL R A PF ++ L HPT +T+ G+ G++ +W+ Q+
Sbjct: 55 FIRSLKSYKLHRT-ASPFDRR-------VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN 106
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|B Chain B, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|C Chain C, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYO|A Chain A, Structure Of Usp14 Bound To Ubquitin Aldehyde
Length = 404
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKW----KYENDIAEETSITYQLQKLFVNLQTST 52
TCY+N+ +Q + PE ++A+ ++ + ++A IT L+ LF ++ ++
Sbjct: 23 TCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS 77
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 158 ERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS-----CVQTY 212
+R F +A ++GH++ + +A + + + D V +W T +S C+
Sbjct: 92 DRTFEMDLLAIIEGHENEVKGVA-WSNDGYYLATCSRDKSVWIWE-TDESGEEYECISVL 149
Query: 213 QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW 243
Q H V+ V + P + S D+T++ W
Sbjct: 150 QEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,594,680
Number of Sequences: 62578
Number of extensions: 803244
Number of successful extensions: 2691
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1787
Number of HSP's gapped (non-prelim): 743
length of query: 639
length of database: 14,973,337
effective HSP length: 105
effective length of query: 534
effective length of database: 8,402,647
effective search space: 4487013498
effective search space used: 4487013498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)