RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18073
(639 letters)
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 239 bits (613), Expect = 1e-73
Identities = 80/163 (49%), Positives = 111/163 (68%), Gaps = 10/163 (6%)
Query: 476 ETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRD 535
E TD TRSFGW+S + ++QHD+QE RVLFD LE + KG+ Q LI NL+ GK+ +
Sbjct: 68 ELTDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTG----QEGLIKNLFGGKLVN 123
Query: 536 YVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKC 595
Y+ C EC E RE+ FLD+ + V+ + + E++ A+V+ ETL+G N+YFC+KC
Sbjct: 124 YIICKECPHESEREEYFLDLQVAVKGKKN------LEESLDAYVQGETLEGDNKYFCEKC 177
Query: 596 GKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
GKK DA KG+ F + P +LTL L RF+FD+ TM RIK+ND+ E
Sbjct: 178 GKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFE 220
Score = 155 bits (394), Expect = 2e-42
Identities = 57/113 (50%), Positives = 72/113 (63%), Gaps = 6/113 (5%)
Query: 1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVET-- 58
TCY+NSL+Q L+MTPEFRNAVY D + S+ LQ+LF+ LQ S P T
Sbjct: 10 ATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTEL 69
Query: 59 TDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQ 111
TD TRSFGW+S + ++QHD+QE RVLFD LE + KG+ Q LI NL+
Sbjct: 70 TDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTG----QEGLIKNLFG 118
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 138 bits (350), Expect = 2e-36
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 469 TSTRPAVETTDLTRSFGWESSD--AWQQHDIQELCRVLFDALETQFKG----SKTTGDQA 522
S +V + ++ G S + Q D E L D L +
Sbjct: 64 NSKNASVSPKNFLQALGKISPQFSGYMQQDAHEFLLFLLDQLHEDLNSLKKRKSHAAENE 123
Query: 523 DLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPE 582
LI L+QG++ +KCL+C E S + F D+ LP+ S + F++ E
Sbjct: 124 SLITKLFQGQLESRLKCLKCKKESSTPEPFSDLSLPIEDSSSVL-----KLLTGNFLKLE 178
Query: 583 TLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
L+ +Y+C KCG K +A K L + P +L +HL RF D++ K++D+VE
Sbjct: 179 ELEKEEKYYCPKCGGKQNAIKKLDISRLPPVLIIHLKRF-EDFNRETEKKISDRVE 233
Score = 89.0 bits (221), Expect = 2e-19
Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYE--NDIAEETSITYQLQKLFVNLQT--STRPAVE 57
TCY+NS++QALF P R+ + + E N + + L LF LQ+ S +V
Sbjct: 12 TCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQLPRALADLFHALQSPNSKNASVS 71
Query: 58 TTDLTRSFGWESSD--AWQQHDIQELCRVLFDALETQFKG----SKTTGDQADLINNLYQ 111
+ ++ G S + Q D E L D L + LI L+Q
Sbjct: 72 PKNFLQALGKISPQFSGYMQQDAHEFLLFLLDQLHEDLNSLKKRKSHAAENESLITKLFQ 131
Query: 112 VLSRN 116
+
Sbjct: 132 GQLES 136
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 134 bits (340), Expect = 3e-35
Identities = 74/301 (24%), Positives = 126/301 (41%), Gaps = 44/301 (14%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L GH G++C+A P + +G+ DG +KVW+L + ++T + H G VRDV DG
Sbjct: 5 LKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQ--CQL 286
+ S D TI+ W E E + HT S +SS++ +I ++ ++
Sbjct: 64 TYLASGSSDKTIRLWDLETGECVRTLTGHT----SYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 287 WEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLR 346
W+ E + + + D ++ V F+P D +AS + D +I L+D R
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVAT------ 172
Query: 347 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT-KLE 405
G V ++ + + + T KL
Sbjct: 173 -------------------LTGHTGEVNSVAFSPDGEKLL---------SSSSDGTIKLW 204
Query: 406 RVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGH 465
+ + L GH++G++ +A P + SG+ DG ++VW+L + CVQT H
Sbjct: 205 DLSTGKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTLSGHTNS 263
Query: 466 V 466
V
Sbjct: 264 V 264
Score = 98.9 bits (247), Expect = 6e-23
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 10/170 (5%)
Query: 165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCF 224
+ L GH D ++ +A P + + S + DG +K+W+L + CV T H G V V F
Sbjct: 127 CLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185
Query: 225 LPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSV-ISSISHQRKSKIFATCGDQ 283
PDG + LS D TIK W +LS + T+ ++S++ + A+ +
Sbjct: 186 SPDGEKLLSSSSDGTIKLW--DLSTGKCL---GTLRGHENGVNSVAFSPDGYLLASGSED 240
Query: 284 C--QLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
++W+ E ++ S + +S+ + ++P D LAS ++D +I ++D
Sbjct: 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289
Score = 98.2 bits (245), Expect = 1e-22
Identities = 63/284 (22%), Positives = 107/284 (37%), Gaps = 48/284 (16%)
Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
GH + +A + + SG+ D +++W+L + CV+T H +V V F PDG
Sbjct: 49 GHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107
Query: 231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVIS-SISHQRKSKIFATCG--DQC-QL 286
S D TIK W E + + HT V S + S F D +L
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGHT---DWVNSVAFSP---DGTFVASSSQDGTIKL 161
Query: 287 WEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLR 346
W+ + + + + ++ V F+P + L S +SD +I L+D
Sbjct: 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEK-LLSSSSDGTIKLWDLSTGKC--------- 211
Query: 347 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREY-VRALNATKLE 405
L G V ++ + + A G + +R + E
Sbjct: 212 ----------------LGTLRGHENGVNSVAFSPDGYLLA---SGSEDGTIRVWDLRTGE 252
Query: 406 RVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
V L GH + ++ LA P + SG+ DG +++W+
Sbjct: 253 CVQT------LSGHTNSVTSLAWSPDG-KRLASGSADGTIRIWD 289
Score = 93.9 bits (234), Expect = 3e-21
Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 43/260 (16%)
Query: 208 CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISS 267
+T + H G V V F PDG + D TIK W E E + HT + V +S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 268 ISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDR 325
A+ +LW+ E E +R + + + V F+P D IL+S + D+
Sbjct: 61 ADGTY----LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDK 115
Query: 326 SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF 385
+I ++D L G ++V ++ +
Sbjct: 116 TIKVWDVETGKC-------------------------LTTLRGHTDWVNSVAFSPDGTFV 150
Query: 386 AKPFVGPRE-YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGE 444
A ++ ++ + + VA L GH ++ +A P ++S + DG
Sbjct: 151 A---SSSQDGTIKLWDLRTGK------CVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGT 200
Query: 445 VKVWNLTSQSCVQTYQAHDG 464
+K+W+L++ C+ T + H+
Sbjct: 201 IKLWDLSTGKCLGTLRGHEN 220
Score = 51.2 bits (123), Expect = 6e-07
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 416 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
L GH G++C+A P + +G+ DG +KVW+L + ++T + H G VRD +
Sbjct: 5 LKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61
Score = 48.1 bits (115), Expect = 7e-06
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 416 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
L GH +S +A P + S + D +KVW++ + C+ T + H V + P
Sbjct: 89 LTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145
Score = 43.9 bits (104), Expect = 2e-04
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 418 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 467
GH + +A + + SG+ D +++W+L + CV+T H +V
Sbjct: 49 GHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 141 bits (357), Expect = 7e-35
Identities = 66/164 (40%), Positives = 100/164 (60%), Gaps = 11/164 (6%)
Query: 475 VETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMR 534
V+TT+LTRSFGW+S D++ QHDIQE RVL D LE +G+ + +N ++ GKM+
Sbjct: 254 VDTTELTRSFGWDSDDSFMQHDIQEFNRVLQDNLEKSMRGTVV----ENALNGIFVGKMK 309
Query: 535 DYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDK 594
Y+KC+ E +R + F DI L V+ ++ E+ R +++ ETLDG N+Y +K
Sbjct: 310 SYIKCVNVNYESARVEDFWDIQLNVKGM------KNLQESFRRYIQVETLDGDNRYNAEK 363
Query: 595 CGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
G + DA KG+ F P +L L L RF++D+ +K+ND+ E
Sbjct: 364 HGLQ-DAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYE 406
Score = 113 bits (285), Expect = 5e-26
Identities = 49/109 (44%), Positives = 69/109 (63%), Gaps = 6/109 (5%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDL 61
TCY+NSL+Q+LF +FR VY ++ + S+ LQ+LF NLQT P V+TT+L
Sbjct: 202 TCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRD-SVALALQRLFYNLQTGEEP-VDTTEL 259
Query: 62 TRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLY 110
TRSFGW+S D++ QHDIQE RVL D LE +G+ + +N ++
Sbjct: 260 TRSFGWDSDDSFMQHDIQEFNRVLQDNLEKSMRGTVV----ENALNGIF 304
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 123 bits (311), Expect = 8e-32
Identities = 51/152 (33%), Positives = 74/152 (48%), Gaps = 12/152 (7%)
Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGD----QADLINNLYQGKMRDYVKCLECGTEK-- 546
+Q D E L D L + K S LI++L+ GK+ + CLECG E
Sbjct: 21 EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVS 80
Query: 547 SREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLK 606
+ + FL +PLPV+ + + + F + E L+G N Y C+K KK +A K LK
Sbjct: 81 TEPELFLSLPLPVKGLPQV----SLEDCLEKFFKEEILEGDNCYKCEKK-KKQEATKRLK 135
Query: 607 FTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
+ P +L +HL RF F+ + KLN KV
Sbjct: 136 IKKLPPVLIIHLKRFSFNED-GTKEKLNTKVS 166
Score = 33.6 bits (77), Expect = 0.26
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 2 TCYLNSLIQALFM 14
TCYLNS++QALF
Sbjct: 8 TCYLNSVLQALFS 20
Score = 31.7 bits (72), Expect = 1.1
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 74 QQHDIQELCRVLFDALETQFKGSKTTGD----QADLINNLYQVLSRN 116
+Q D E L D L + K S LI++L+ +
Sbjct: 21 EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLES 67
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 101 bits (253), Expect = 2e-23
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTF 552
QQ D QE ++ LE + SK D +++ +L++G+ +C +CG E S F
Sbjct: 87 QQQDAQEFSKLFLSLLEAKLSKSKNP-DLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKF 145
Query: 553 LDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPY 612
++ L ++ + + E + F++ E L G NQYFC+ C K DA + ++ T P
Sbjct: 146 YELELQLKGHKT------LEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPP 199
Query: 613 LLTLHLMRFDFDYSTMHRIKLN 634
L L+RF FD T + KLN
Sbjct: 200 TLNFQLLRFVFDRKTGAKKKLN 221
Score = 72.8 bits (179), Expect = 7e-14
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWK----------YENDIAEETSITYQLQKLFVNLQTS 51
TCY+NS +Q FM EFR AVY+ + E +I QLQ +F LQ
Sbjct: 8 TCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFG 67
Query: 52 TRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSK 97
R V+ + ++ G ++ QQ D QE ++ LE + SK
Sbjct: 68 NRSVVDPSGFVKALGLDTG---QQQDAQEFSKLFLSLLEAKLSKSK 110
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 96.2 bits (240), Expect = 8e-22
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 17/153 (11%)
Query: 493 QQHDIQELCRVLFDALET----QFKGSKTTGDQA---DLINNLYQGKMRDYVKCLECGTE 545
+Q D E R L DA++ +FK K + L+ ++ G +R VKCL C
Sbjct: 85 RQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHV 144
Query: 546 KSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGL 605
+ D FLD+ L ++ S+ +A+ F +PE LDG N+Y C++C KK A K L
Sbjct: 145 SNTYDPFLDLSLDIKG-ADSLE-----DALEQFTKPEQLDGENKYKCERCKKKVKASKQL 198
Query: 606 KFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
P +LT+HL RF K+N ++
Sbjct: 199 TIHRAPNVLTIHLKRFSNFRGG----KINKQIS 227
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 95.3 bits (237), Expect = 2e-21
Identities = 48/145 (33%), Positives = 65/145 (44%), Gaps = 22/145 (15%)
Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTF 552
Q D E R L D L T LI ++ GK+ ++CL C + +R + F
Sbjct: 80 SQQDCSEYLRYLLDRLHT-------------LIEKMFGGKLSTTIRCLNCNSTSARTERF 126
Query: 553 LDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPY 612
D+ L + Y F+ PE L G NQY+C+KC DA K +K T P
Sbjct: 127 RDLDLSFPSVQDLLNY---------FLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPE 177
Query: 613 LLTLHLMRFDFDYSTMHRIKLNDKV 637
L L L+RF +D T R K+ D V
Sbjct: 178 YLILTLLRFSYDQKTHVREKIMDNV 202
Score = 52.5 bits (126), Expect = 3e-07
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDL 61
TCY+NS++QALFM +FR V + + S+ +LQ L +L + R A D
Sbjct: 8 TCYMNSVLQALFMAKDFRRQVLSLNLPR-LGDSQSVMKKLQLLQAHLMHTQRRAEAPPD- 65
Query: 62 TRSFGWESSDAW----QQHDIQELCRVLFDALET 91
F S W Q D E R L D L T
Sbjct: 66 --YFLEASRPPWFTPGSQQDCSEYLRYLLDRLHT 97
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 92.7 bits (231), Expect = 2e-21
Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 17/147 (11%)
Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTF 552
Q D QE L D L + +I +L+QG+++ + CL CG + + F
Sbjct: 21 DQQDAQEFLLFLLDGLHS-------------IIVDLFQGQLKSRLTCLTCGKTSTTFEPF 67
Query: 553 LDIPLPVRPFGSSVA-YGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFP 611
+ LP+ P GS A + + +R F + ETLDG N + C KC KK A K L + P
Sbjct: 68 TYLSLPI-PSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLP 126
Query: 612 YLLTLHLMRFDFDYSTMHRIKLNDKVE 638
+L +HL RF F + KL V
Sbjct: 127 KVLIIHLKRFSFSRGST--RKLTTPVT 151
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 89.8 bits (221), Expect = 6e-19
Identities = 68/379 (17%), Positives = 146/379 (38%), Gaps = 41/379 (10%)
Query: 113 LSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGH 172
S N + L++++ ++ G ++ + L GH
Sbjct: 8 SSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLL---LRGH 64
Query: 173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNL-TSQSCVQTYQ-AHDGHVRDVCFL-PDGS 229
+D I+ +A P ++SG+ DG +K+W+L + +++ + HD V + PDG+
Sbjct: 65 EDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123
Query: 230 QFLSVG--IDNTIKTWSSE-LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD---Q 283
L +D T+K W + + H+ ++S++ K+ A+
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHS----ESVTSLAFSPDGKLLASGSSLDGT 179
Query: 284 CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA--------- 334
+LW+ +P+ + + D + + F+P ++AS +SD +I L+D
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239
Query: 335 -------TVLSRNPDEYLRETKTSIHRI--PRNIDPSLHPFEGPREYVRALNATKLERVF 385
+ S + + R+ R+ L G V ++ + ++
Sbjct: 240 GHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299
Query: 386 AKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 445
A VR + + + + L GH+ +S L+ P + G+ DG +
Sbjct: 300 A--SGSSDGTVRLWDLETGKLLSSL----TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353
Query: 446 KVWNLTSQSCVQTYQAHDG 464
++W+L + ++T + H
Sbjct: 354 RLWDLRTGKPLKTLEGHSN 372
Score = 86.3 bits (212), Expect = 8e-18
Identities = 71/310 (22%), Positives = 121/310 (39%), Gaps = 29/310 (9%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFL 225
+ L+GH + ++ LA P + DG +K+W+L + + T H V + F
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207
Query: 226 PDGS-QFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQC 284
PDG S D TI+ W LS + + S SV+SS S +
Sbjct: 208 PDGGLLIASGSSDGTIRLWD--LSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTI 265
Query: 285 QLWE-HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR---------- 333
+LW+ + +R S + S+ V F+P D +LAS +SD ++ L+D
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTL 324
Query: 334 ------ATVLSRNPDEYLRETKTSIHRIPRNID-PSLHPFEGPREYVRALNATKLERVFA 386
+ LS +PD L + S R D + P + + L+ +
Sbjct: 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRV 384
Query: 387 KPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVK 446
VR + + + NLDGH ++ L P ++ SG+ D ++
Sbjct: 385 VSSGSTDGTVRLWDLSTGS------LLRNLDGHTSRVTSLDFSPDG-KSLASGSSDNTIR 437
Query: 447 VWNLTSQSCV 456
+W+L +
Sbjct: 438 LWDLKTSLKS 447
Score = 77.4 bits (189), Expect = 6e-15
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 12/193 (6%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ--TYQAHDGHVRDVC 223
+ L GH + +A P + SG+ DG V++W+L + + T + H+G V +
Sbjct: 277 LRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 224 FLPDGSQFL-SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD 282
F PDGS + D TI+ W + L T+ S + S+S ++ ++
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKP-----LKTLEGHSNVLSVSFSPDGRVVSSGST 390
Query: 283 --QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRN 340
+LW+ +R + + + F+P D LAS +SD +I L+D + ++ S +
Sbjct: 391 DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVS 449
Query: 341 PDEYLRETKTSIH 353
+ +
Sbjct: 450 FSPDGKVLASKSS 462
Score = 44.3 bits (103), Expect = 1e-04
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD 227
+ ++ P + SG+ DG V++W+L++ S ++ H V + F PD
Sbjct: 365 KTLEGHSNVLSVSFSPDGR-VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD 423
Query: 228 GSQFLSVGIDNTIKTW--SSELSESDHIVPLHTIISKSVISSI 268
G S DNTI+ W + L + SKS S+
Sbjct: 424 GKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466
Score = 42.4 bits (98), Expect = 6e-04
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD 468
+ L+GH + ++ LA P + DG +K+W+L + + T H V
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 87.4 bits (217), Expect = 7e-19
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 519 GDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAF 578
Q ++ ++QG + + +CL C T SR++TFLD+ + V S I +R F
Sbjct: 103 EPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQNTS------ITSCLRQF 156
Query: 579 VRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
ETL G N+++CD+C +A K +K + P +L LHL RF +D IKL +V
Sbjct: 157 SATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVV 216
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 72.4 bits (178), Expect = 6e-14
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 19/146 (13%)
Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTF 552
QQ D EL R L D L T I++++ G++ + C CGT + F
Sbjct: 50 QQQDSHELLRYLLDGLRT-------------FIDSIFGGELTSTIMCESCGTVSLVYEPF 96
Query: 553 LDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPY 612
LD+ LP S I ++ F E L+G N++ C+ C A K ++ P
Sbjct: 97 LDLSLPRSDEIKSEC--SIESCLKQFTEVEILEGNNKFACENC---TKAKKQYLISKLPP 151
Query: 613 LLTLHLMRFDFDYSTMHRIKLNDKVE 638
+L +HL RF S R K++ V
Sbjct: 152 VLVIHLKRFQQPRSANLR-KVSRHVS 176
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 64.4 bits (157), Expect = 3e-11
Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 13/165 (7%)
Query: 465 HVRDTSTRPAVETTDLTRSFGWESSDA--WQQHDIQELCRVLFDAL----ETQFKGSK-- 516
+ D ST + T+L R+F A Q DIQE R + + L T
Sbjct: 51 DMLDKSTGQNCQATNLLRTFSGIPEAAALGLQQDIQEANRFILEQLSLPLLTLKPDIFHN 110
Query: 517 -TTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAM 575
TG+ D +++L+ ++C CG E +E+ L + LP P +
Sbjct: 111 RCTGESGDSLDSLFGTSFISSIRCDSCGNESVKEEPLLTLELPYPPIDKP-QGRTFSNIL 169
Query: 576 RAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMR 620
+ E ++ + C+ C K A+ P +L + L R
Sbjct: 170 ERSLNREKIN---RITCNSCRKYSLANSRKHVKSLPPILGICLKR 211
Score = 61.7 bits (150), Expect = 2e-10
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDL 61
CYLN+L+Q +F P NA+ ++ D +E + +L LF L ST + T+L
Sbjct: 9 NCYLNALLQLMFFIPPLFNAIL--RHSADCPKENCLLCELGFLFDMLDKSTGQNCQATNL 66
Query: 62 TRSFGWESSDA--WQQHDIQELCRVLFDAL 89
R+F A Q DIQE R + + L
Sbjct: 67 LRTFSGIPEAAALGLQQDIQEANRFILEQL 96
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 64.3 bits (157), Expect = 4e-11
Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 493 QQHDIQELCRVLFDALETQFKGSK-TTGDQAD---LINNLYQGKMRDYVKCLECGTEKSR 548
Q D E + L D L T + G K D++ +I+ + G ++ V C CG +
Sbjct: 87 SQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTT 146
Query: 549 EDTFLDIPLPVRPFGSSVAYGDIIEA---------MRAFVRPETLDGANQYFCDKCGKKC 599
D FLD+ L + + + F RPE L G Y C CG
Sbjct: 147 VDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKL-GDFAYKCSGCGSTQ 205
Query: 600 DAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
+A K L + P +L L RF+ + R K++ V+
Sbjct: 206 EATKQLSIKKLPPVLCFQLKRFEHSLNKTSR-KIDTYVQ 243
Score = 30.0 bits (68), Expect = 4.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 2 TCYLNSLIQALFMTPEFRN 20
TC++N ++QAL P RN
Sbjct: 9 TCFMNVILQALLHNPLLRN 27
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 62.6 bits (152), Expect = 2e-10
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 26/152 (17%)
Query: 490 DAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSRE 549
+ + QHD QE+ + + ++ +L+ +QG++ +CLEC T R
Sbjct: 101 EGYLQHDAQEVLQCILGNIQ-------------ELVEKDFQGQLVLRTRCLECETFTERR 147
Query: 550 DTFLDIPLPVRPFGSSVAYG-------------DIIEAMRAFVRPETLDGANQYFCDKCG 596
+ F DI +PV+ S + + A+ F E + G ++YFC+ C
Sbjct: 148 EDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCH 207
Query: 597 KKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTM 628
+A + L F + P ++T+HL F + S
Sbjct: 208 HYTEAERSLLFDKLPEVITIHLKCFAANGSEF 239
Score = 32.2 bits (73), Expect = 0.85
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEET--SITYQLQKLFVNLQTSTRP----- 54
TCYLNS++Q L+ P F++ + K + E S + + + + P
Sbjct: 33 TCYLNSVLQVLYFCPGFKHGL-KHLVSLISSVEQLQSSFLLNPEKYNDELANQAPRRLLN 91
Query: 55 AVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFK 94
A+ ++ + + + QHD QE+ + + ++ +
Sbjct: 92 ALR--EVNPMY-----EGYLQHDAQEVLQCILGNIQELVE 124
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 60.1 bits (146), Expect = 5e-10
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 26/133 (19%)
Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECG-TEKSREDT 551
+Q D EL +VL + LE K + G + + CL+CG + K R ++
Sbjct: 33 EQQDAHELFQVLLETLEQLLK-------------FPFDGLLASRIVCLQCGESSKVRYES 79
Query: 552 FLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFP 611
F + LPV P SS + + + F+ E +D Y CD+C P
Sbjct: 80 FTMLSLPV-PNQSSGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLP 127
Query: 612 YLLTLHLMRFDFD 624
+L +HL R FD
Sbjct: 128 QILCIHLSRSVFD 140
Score = 29.3 bits (66), Expect = 5.0
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETS-ITYQLQKLFVNL 48
TC++NS++QAL P + ++ + D E + L++L
Sbjct: 8 TCFMNSVLQALASLPSLIEYLEEFLEQQDAHELFQVLLETLEQLLKFP 55
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 56.9 bits (138), Expect = 1e-08
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEK--SRED 550
+Q D E L D L+ + S N+L++ + D ++CL C K S
Sbjct: 99 RQQDALEFLLHLIDKLD---RESFKNLGLN--PNDLFKFMIEDRLECLSCKKVKYTSELS 153
Query: 551 TFLDIPLPVRPFGSSVAYG------DIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKG 604
L +P+P + + ++A+ PET++ FC C +K A K
Sbjct: 154 EILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKT 209
Query: 605 LKFTEFPYLLTLHLMRFDF 623
F FP L +++ RF
Sbjct: 210 TGFKTFPDYLVINMKRFQL 228
Score = 36.5 bits (85), Expect = 0.031
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 2 TCYLNSLIQALFMTPEF--RNAVYKWKYENDIAE-ETSITYQLQKL 44
+CYLNS++Q LF P F R + K+ +D+ + + QL KL
Sbjct: 8 SCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKL 53
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 56.2 bits (135), Expect = 3e-08
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 524 LINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPET 583
L+ + G+ + ++C C + F + +P V + E + F E
Sbjct: 223 LVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPP----YEVVQLGLQECIDRFYEEEK 278
Query: 584 LDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLN 634
L+G + + C KCG+K + K ++ P +L +H+ RF S M R K++
Sbjct: 279 LEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHI--SVMGRKKID 327
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 48.1 bits (115), Expect = 1e-07
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 205 SQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
S ++T + H G V V F PDG S D TIK W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 39.2 bits (92), Expect = 1e-04
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 202
+ L GH ++ +A P + SG+ DG +K+W+
Sbjct: 5 LKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40
Score = 39.2 bits (92), Expect = 1e-04
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
+ L GH ++ +A P + SG+ DG +K+W+
Sbjct: 5 LKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40
Score = 32.3 bits (74), Expect = 0.037
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 293 EPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
E ++ + + V F+P D LAS + D +I L+D
Sbjct: 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 46.6 bits (111), Expect = 3e-07
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 207 SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
++T + H G V V F PDG+ S D T++ W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 38.9 bits (91), Expect = 2e-04
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 202
+ L GH ++ +A P + + SG+ DG V+VW+
Sbjct: 4 LRTLKGHTGPVTSVAFSPDG-NLLASGSDDGTVRVWD 39
Score = 38.9 bits (91), Expect = 2e-04
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
+ L GH ++ +A P + + SG+ DG V+VW+
Sbjct: 4 LRTLKGHTGPVTSVAFSPDG-NLLASGSDDGTVRVWD 39
Score = 31.2 bits (71), Expect = 0.10
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 293 EPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
+ +R + + V F+P D ++LAS + D ++ ++D
Sbjct: 2 KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 52.5 bits (126), Expect = 3e-07
Identities = 41/169 (24%), Positives = 60/169 (35%), Gaps = 38/169 (22%)
Query: 2 TCYLNSLIQALFMTPEFRNAV-----YKWKYENDIAEETSI----------------TYQ 40
TCYLNSL+Q F R+ V K + +D E I Y+
Sbjct: 10 TCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYE 69
Query: 41 LQKLFVNLQTSTRPAVE-TTDLTRSFGWESSDAWQQHDIQE-LCRVLFD------ALETQ 92
L+ LF +L S +V + +L A +Q D+ E + VLF +
Sbjct: 70 LRSLFNDLIHSNTRSVTPSKELAYL-------ALRQQDVTECIDNVLFQLEVALEPISNA 122
Query: 93 FKGSKT--TGDQADLINNLYQVLSRNPDEYLRETKTSIHRIPRNIDPSL 139
F G T +Q+DLI L+ ++ R SL
Sbjct: 123 FAGPDTEDDKEQSDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSL 171
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 50.8 bits (121), Expect = 2e-06
Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 12/141 (8%)
Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTF 552
Q D E L + + + I +L++ ++ + C C ++
Sbjct: 393 AQQDAHEFLLFLLEKIRKGERSYLIPP-----ITSLFEFEVERRLSCSGCMDVSYSYESM 447
Query: 553 LDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPY 612
L I + + DI +++ AF P+T+ ++ C+ C K A + P
Sbjct: 448 LMICIFLEGNDEPQ---DIRKSVEAFFLPDTI----EWSCENCKGKKKASRKPFIKSLPK 500
Query: 613 LLTLHLMRFDFDYSTMHRIKL 633
L L + R+ + ++
Sbjct: 501 YLILQVGRYSLQNYKVEKLSD 521
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyse bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 305
Score = 46.6 bits (111), Expect = 2e-05
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 2 TCYLNSLIQALFMTPEFRNAV--YKWKYENDIAEETSITYQLQKLFVNLQTSTRP 54
TCYLNS +Q L PE R+A+ Y ++T L+ LF + P
Sbjct: 8 TCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEP 62
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 36.4 bits (84), Expect = 0.058
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 578 FVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKV 637
F +PE L ++ ++C C + A K ++ P +L +HL RF S R K++D V
Sbjct: 684 FSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSF--RDKIDDLV 741
Query: 638 E 638
E
Sbjct: 742 E 742
Score = 32.9 bits (75), Expect = 0.59
Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQ------KLFVNLQTSTRPA 55
TCY+NS +Q L T E R+ +YE I EE + L L A
Sbjct: 274 TCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHA 333
Query: 56 VETTDLTRSFG--WESSDAWQQHDIQELCRVLFDAL 89
+ ++ G E + Q D QE L D L
Sbjct: 334 FTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGL 369
Score = 29.9 bits (67), Expect = 5.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 524 LINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPV 559
+I +L+QG + + C CG+ D F+D+ LP+
Sbjct: 413 IITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPL 448
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 34.5 bits (79), Expect = 0.16
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 26/96 (27%)
Query: 274 SKIFATCGDQCQL------WEHE--------------RNEPIRAFSWNVDSLHHVQFNPI 313
S++ +CG C WE E R P+ + S+ +QFNP
Sbjct: 26 SRVIDSCGIACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPC 85
Query: 314 DKHILASCASDRSIILYDTRATVLSRNPDEYLRETK 349
ILAS + D +I +++ + DE ++E K
Sbjct: 86 FSEILASGSEDLTIRVWEI------PHNDESVKEIK 115
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 31.6 bits (72), Expect = 0.82
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 21/84 (25%)
Query: 187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE 246
ST+ S A VK++N TS V D+ + + + W+
Sbjct: 100 STLASKALQPGVKIFNATS-------------VEDLIIRDN-------RVAGVVTNWTLV 139
Query: 247 LSESDHIVPLHTIISKSVISSISH 270
H+ PL TI +K+V+ + H
Sbjct: 140 EMAGLHMDPL-TIRAKAVVDATGH 162
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 32.2 bits (73), Expect = 0.96
Identities = 16/77 (20%), Positives = 34/77 (44%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFL 225
+ +L GH + ++ HP+ ++ + S D V VW++ V+ + H + + +
Sbjct: 118 IVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN 177
Query: 226 PDGSQFLSVGIDNTIKT 242
DGS + D +
Sbjct: 178 LDGSLLCTTSKDKKLNI 194
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 32.4 bits (73), Expect = 0.99
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN-TIKTWSS 245
S + S ++G V+VW++ V + H+ V + + L+ G D+ ++K WS
Sbjct: 546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605
Query: 246 ELSESDHIVPLHTIISKSVISSI---SHQRKSKIFATCGDQCQLWEHERNE--PIRAFSW 300
V + TI +K+ I + S +S F + D + RN P+
Sbjct: 606 NQG-----VSIGTIKTKANICCVQFPSESGRSLAFGS-ADHKVYYYDLRNPKLPLCTMIG 659
Query: 301 NVDSLHHVQFNPIDKHILASCASDRSIILYD 331
+ ++ +V+F +D L S ++D ++ L+D
Sbjct: 660 HSKTVSYVRF--VDSSTLVSSSTDNTLKLWD 688
Score = 29.7 bits (66), Expect = 6.6
Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 217 GHVRDVCFLP--DGSQFLSVGIDNTIKTWSSELSESD-HIVPLHTIISKSVISSISHQRK 273
GH + V ++ D S +S DNT+K W +S S + PLH+ + + + +
Sbjct: 659 GHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV 718
Query: 274 SKIF-ATCGDQCQLWEHERNEPIRAFSW---NVDSLHHVQFNPIDKHILASCASDRSIIL 329
S + AT + +++ + + P+ S+ +D + ++ + + I + C +S L
Sbjct: 719 SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTL 778
Query: 330 YDTRAT 335
+T
Sbjct: 779 VAANST 784
>gnl|CDD|224517 COG1601, GCD7, Translation initiation factor 2, beta subunit
(eIF-2beta)/eIF-5 N-terminal domain [Translation,
ribosomal structure and biogenesis].
Length = 151
Score = 29.6 bits (67), Expect = 2.7
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 23/91 (25%)
Query: 478 TDLTRSFGW--ESSDAWQQHDIQELCRVLFDALETQ----------FKGSKTTGDQADLI 525
+ R+FG E+ + +H ++ L + L T +G + I
Sbjct: 43 RTIIRNFGDIAEALNRDPEHLVKFLKK----ELGTAGSIDGKGRLVLQGKFSD----SEI 94
Query: 526 NNLYQGKMRDYVKCLECG---TEKSREDTFL 553
N + + +YVKC ECG TE +E+ L
Sbjct: 95 VNEIERYIAEYVKCKECGSPDTELIKEERLL 125
>gnl|CDD|223501 COG0424, Maf, Nucleotide-binding protein implicated in inhibition
of septum formation [Cell division and chromosome
partitioning].
Length = 193
Score = 29.8 bits (68), Expect = 3.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 131 IPRNIDPSLHPFEGPREYVRALNATKLERVFAK 163
IP +ID L E PREYV L K V A+
Sbjct: 28 IPSDIDEPLLKAEEPREYVLRLAEEKARAVAAR 60
Score = 29.8 bits (68), Expect = 3.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 355 IPRNIDPSLHPFEGPREYVRALNATKLERVFAK 387
IP +ID L E PREYV L K V A+
Sbjct: 28 IPSDIDEPLLKAEEPREYVLRLAEEKARAVAAR 60
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 268
Score = 29.4 bits (66), Expect = 5.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 4 YLNSLIQALFMTPEFRNA 21
Y NSL+Q L+ P FRN
Sbjct: 26 YCNSLLQLLYFIPPFRNF 43
>gnl|CDD|223449 COG0372, GltA, Citrate synthase [Energy production and conversion].
Length = 390
Score = 29.6 bits (67), Expect = 6.0
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 27/82 (32%)
Query: 115 RNPDEYLRETKTS---I----HRIPRNIDPSLHPFEGPREYVRAL-----------NATK 156
+ + Y+R+ I HR+ +N DP + +E L A +
Sbjct: 250 ESAEAYVRKALDRKERIMGFGHRVYKNYDPR---AKVLKELAEKLGKELGDLKLYEIAEE 306
Query: 157 LERV------FAKPFVANLDGH 172
LE + F K N+D +
Sbjct: 307 LEEIALEDLGFEKKLYPNVDFY 328
>gnl|CDD|235189 PRK03988, PRK03988, translation initiation factor IF-2 subunit
beta; Validated.
Length = 138
Score = 28.0 bits (63), Expect = 8.5
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 524 LINNLYQGKMRDYVKCLECG---TEKSRED 550
+IN +++YV C ECG T+ +E
Sbjct: 90 VINEKIDRYVKEYVICPECGSPDTKLIKEG 119
>gnl|CDD|132082 TIGR03037, anthran_nbaC, 3-hydroxyanthranilate 3,4-dioxygenase.
Members of this protein family, from both bacteria and
eukaryotes, are the enzyme 3-hydroxyanthranilate
3,4-dioxygenase. This enzyme acts on the tryptophan
metabolite 3-hydroxyanthranilate and produces
2-amino-3-carboxymuconate semialdehyde, which can
rearrange spontaneously to quinolinic acid and feed into
nicotinamide biosynthesis, or undergo further enzymatic
degradation.
Length = 159
Score = 28.2 bits (63), Expect = 9.8
Identities = 31/78 (39%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 529 YQGKMRDYVKCLECGTEKS---RE-DTFLDIPL----PVRPFGSSVAYGDIIEAMRAFVR 580
YQ K Y+K E G + RE D FL P P RP GS G +IE R
Sbjct: 53 YQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAGS---IGLVIERKR---P 106
Query: 581 PETLDGANQYFCDKCGKK 598
LDG Q+FC +CG K
Sbjct: 107 QGELDGF-QWFCPQCGHK 123
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.412
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,796,706
Number of extensions: 2986880
Number of successful extensions: 2535
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2440
Number of HSP's successfully gapped: 87
Length of query: 639
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 536
Effective length of database: 6,369,140
Effective search space: 3413859040
Effective search space used: 3413859040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)