RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18073
(639 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 101 bits (252), Expect = 2e-24
Identities = 54/314 (17%), Positives = 112/314 (35%), Gaps = 24/314 (7%)
Query: 163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDV 222
P L GH+ ++ + HP S ++S + D +KVW+ + +T + H V+D+
Sbjct: 7 PPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
Query: 223 CFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD 282
F G + +SS+S +
Sbjct: 66 SFDHSGKLL----ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 121
Query: 283 --QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRN 340
++WE + ++ F+ + + + V+ N D ++ASC++D+++ ++
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVA------- 173
Query: 341 PDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN 400
TK + + P +++ GP + +
Sbjct: 174 -------TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226
Query: 401 AT-KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY 459
T K+ V + L GH + + + H I+S A D ++VW+ ++ C++T
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTL 285
Query: 460 QAHDGHVRDTSTRP 473
AH+ V
Sbjct: 286 NAHEHFVTSLDFHK 299
Score = 76.3 bits (186), Expect = 1e-15
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFL 225
+ L GH + + + H I+S A D ++VW+ ++ C++T AH+ V + F
Sbjct: 240 LMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 298
Query: 226 PDGSQFLSVGIDNTIKTW 243
++ +D T+K W
Sbjct: 299 KTAPYVVTGSVDQTVKVW 316
Score = 66.7 bits (161), Expect = 1e-12
Identities = 29/198 (14%), Positives = 70/198 (35%), Gaps = 28/198 (14%)
Query: 156 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH 215
K+ V V GH++ + + + + I S + D V+VW + ++ C + H
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREH 184
Query: 216 DGHVRDVCF--------------------LPDGSQFLSVGIDNTIKTWSSELSESDHIVP 255
V + + G LS D TIK W +
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244
Query: 256 LHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPI 313
H + + + K +C D ++W+++ ++ + + + + F+
Sbjct: 245 GHD----NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK- 299
Query: 314 DKHILASCASDRSIILYD 331
+ + + D+++ +++
Sbjct: 300 TAPYVVTGSVDQTVKVWE 317
Score = 55.5 bits (132), Expect = 7e-09
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDT 469
P L GH+ ++ + HP S ++S + D +KVW+ + +T + H V+D
Sbjct: 7 PPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
Query: 470 STRPAVETTDLTRSFGWESSDAWQQHDIQ 498
S + + + +Q +
Sbjct: 66 SFDHSGKLLASCSADMTIKLWDFQGFECI 94
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 84.0 bits (206), Expect = 3e-18
Identities = 28/147 (19%), Positives = 63/147 (42%), Gaps = 5/147 (3%)
Query: 187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE 246
+SGA D K+W++ C QT+ H+ + +CF P+G+ F + D T + +
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 247 LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDS 304
+ II I+S+S + ++ D C +W+ + + + + +
Sbjct: 257 ADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 305 LHHVQFNPIDKHILASCASDRSIILYD 331
+ + D +A+ + D + +++
Sbjct: 315 VSCLGVTD-DGMAVATGSWDSFLKIWN 340
Score = 80.2 bits (196), Expect = 8e-17
Identities = 46/305 (15%), Positives = 84/305 (27%), Gaps = 33/305 (10%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
L GH I + ++S + DG++ +W+ + + V V + P G
Sbjct: 51 LRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWE 288
+ G+DN ++ + E + V +S ++I + GD
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 289 HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET 348
D + S A D S L+D R +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC----------- 218
Query: 349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVF 408
F G + A+ FA G + L + ++
Sbjct: 219 --------------RQTFTGHESDINAICFFPNGNAFA---TGSDDATCRLFDLRADQEL 261
Query: 409 AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD 468
N GI+ ++ + +++G D VW+ HD V
Sbjct: 262 MTYSHDN---IICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 469 TSTRP 473
Sbjct: 318 LGVTD 322
Score = 70.9 bits (172), Expect = 7e-14
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF 231
GI+ ++ + +++G D VW+ HD V + DG
Sbjct: 269 IICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327
Query: 232 LSVGIDNTIKTWS 244
+ D+ +K W+
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 59.4 bits (142), Expect = 4e-10
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 9/126 (7%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGH--VRDVC 223
GH+ I+ + P + +G+ D ++++L + + TY + + V
Sbjct: 219 RQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 224 FLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD- 282
F G L+ D W + ++ ++ H + +S + AT
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD----NRVSCLGVTDDGMAVATGSWD 333
Query: 283 -QCQLW 287
++W
Sbjct: 334 SFLKIW 339
Score = 40.9 bits (94), Expect = 3e-04
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 202
L GH + +SCL + +G++D +K+WN
Sbjct: 305 AGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 84.5 bits (207), Expect = 4e-18
Identities = 58/357 (16%), Positives = 110/357 (30%), Gaps = 47/357 (13%)
Query: 134 NIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA 193
+ + L L R +L H + C+ ++
Sbjct: 24 DSQSVPDALKKQTNDYYILYNPALPREIDVELHKSL-DHTSVVCCVKFSND--GEYLATG 80
Query: 194 YDGEVKVWNLTSQSCVQTYQ------------------AHDGHVRDVCFLPDGSQFLSVG 235
+ +V+ ++ S V + D ++R VCF PDG +
Sbjct: 81 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140
Query: 236 IDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPI 295
D I+ W E + IV + + + S K+ + GD+ R
Sbjct: 141 EDRLIRIWDIE---NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197
Query: 296 RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRI 355
D + V +P D +A+ + DR++ ++D+ +
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET------------------GFL 239
Query: 356 PRNIDPSLHPFEGPREYVRALNATKLERVFA----KPFVGPREYVRALNATKLERVFAKP 411
+D G ++ V ++ T+ + V A N + + +
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299
Query: 412 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD 468
GHKD + +A I+SG+ D V W+ S + + Q H V
Sbjct: 300 CEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355
Score = 69.1 bits (167), Expect = 4e-13
Identities = 30/185 (16%), Positives = 68/185 (36%), Gaps = 24/185 (12%)
Query: 172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-------AHDGHVRDVCF 224
+DG++ +A P I +G+ D V+VW+ + V+ H V V F
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 262
Query: 225 LPDGSQFLSVGIDNTIKTWSSELSES--------DHIVPLHTIISKSVISSISHQRKSKI 276
DG +S +D ++K W+ + + + + I K + S++ + +
Sbjct: 263 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 322
Query: 277 FATCGD--QCQLWEHERNEPIRAFS------WNVDSLHHVQFNPIDKHILASCASDRSII 328
+ W+ + P+ +V + P + ++ A+ + D
Sbjct: 323 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKAR 381
Query: 329 LYDTR 333
++ +
Sbjct: 382 IWKYK 386
Score = 35.5 bits (80), Expect = 0.019
Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 166 VANLDGHKDGISCLAKHPT-----KLSTIISGAYDGEVKVWNL 203
+ L GH++ + +A + + +G+ D + ++W
Sbjct: 343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 82.8 bits (203), Expect = 9e-18
Identities = 46/92 (50%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDL 61
TCY+NSL+Q LF T + R AVY E D + + S+ LQ++F LQ S +P V T L
Sbjct: 15 TCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSK-SVPLALQRVFYELQHSDKP-VGTKKL 72
Query: 62 TRSFGWESSDAWQQHDIQELCRVLFDALETQF 93
T+SFGWE+ D++ QHD+QELCRVL D +E +
Sbjct: 73 TKSFGWETLDSFMQHDVQELCRVLLDNVENKM 104
Score = 72.8 bits (177), Expect = 2e-14
Identities = 64/170 (37%), Positives = 92/170 (54%), Gaps = 11/170 (6%)
Query: 470 STRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLY 529
+ V T LT+SFGWE+ D++ QHD+QELCRVL D +E + KG+ G L+
Sbjct: 62 HSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTI----PKLF 117
Query: 530 QGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQ 589
+GKM Y++C E R + + DI L ++ +I E+ +V E LDG N+
Sbjct: 118 RGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG------KKNIFESFVDYVAVEQLDGDNK 171
Query: 590 YFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC 639
Y + +A KG+KF P +L L LMRF +D T IK+ND+ E
Sbjct: 172 YDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEF 220
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 80.3 bits (196), Expect = 7e-17
Identities = 31/306 (10%), Positives = 78/306 (25%), Gaps = 24/306 (7%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA---HDGHVRDVCFL 225
KD IS + P+K S ++ ++DG + V+ Q+ + + F+
Sbjct: 7 EQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 226 PDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQ 285
+ + VG + + + + + I A+ +
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 286 LWEHERNEPIRAFSWNVDSLHHVQFNPIDKH-----ILASCASDRSIILYDTRATVLSRN 340
+ + N++S + N I L ++ + +
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 341 PDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN 400
E + + V + N
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY--------------N 231
Query: 401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ 460
++K ++ + P + + DG + WNL ++ ++ +
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFA 290
Query: 461 AHDGHV 466
+
Sbjct: 291 KFNEDS 296
Score = 52.5 bits (124), Expect = 7e-08
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 152 LNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 211
N++K ++ + P + + DG + WNL ++ ++
Sbjct: 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKN 288
Query: 212 YQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
+ + V + D+T KT +
Sbjct: 289 FAKFNE-DSVVKIACSDNILCLATSDDTFKTNA 320
Score = 50.6 bits (119), Expect = 3e-07
Identities = 10/109 (9%), Positives = 30/109 (27%)
Query: 208 CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISS 267
VQ QA ++ D+ +P S L D ++ + ++ + + ++
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 268 ISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH 316
Q ++ + + + + +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG 111
Score = 43.7 bits (101), Expect = 5e-05
Identities = 21/167 (12%), Positives = 42/167 (25%), Gaps = 19/167 (11%)
Query: 194 YDGEVKVWNLTSQSCVQTYQAHDGH----VRDVCFLPDGSQFLSVGIDNTIKTWSSELSE 249
+ +V+ + L G + + ID + +
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227
Query: 250 S-----------DHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIR 296
H + L ++SI + K T G W + + I+
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287
Query: 297 AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDE 343
F+ + V+ +IL SD + + N
Sbjct: 288 NFA-KFNEDSVVKIAC-SDNILCLATSDDTFKTNAAIDQTIELNASS 332
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 79.1 bits (193), Expect = 2e-16
Identities = 34/303 (11%), Positives = 87/303 (28%), Gaps = 17/303 (5%)
Query: 172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS--CVQTYQAHDGHVRDVCFLPDGS 229
+ ISC A + + + I + EV ++ + V + H+G V V + PD +
Sbjct: 6 LVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 64
Query: 230 QFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEH 289
+ ++ G D W+ + + + I + + K + +
Sbjct: 65 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124
Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETK 349
E+ + + + + D + + S E
Sbjct: 125 EQENDWWVCKHI----KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180
Query: 350 TSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFA 409
+ + +V + + A + + + A
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS----------HDSTVCLADA 230
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDT 469
+A + + LA S++++ +D ++ S + ++ + +
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS 290
Query: 470 STR 472
S R
Sbjct: 291 SQR 293
Score = 54.5 bits (129), Expect = 2e-08
Identities = 41/320 (12%), Positives = 90/320 (28%), Gaps = 32/320 (10%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD--GHVRDVC 223
V L H ++ + P + I++ D VW L ++ T R V
Sbjct: 44 VHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 102
Query: 224 FLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSI------------SHQ 271
+ P+ +F I E + +S + S+ S
Sbjct: 103 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162
Query: 272 RKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPI-------DKHILASCASD 324
K +IF+ + + + + + + +A + D
Sbjct: 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 222
Query: 325 RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNI-------DPSLHPFEGPREYVRALN 377
++ L D + ++ P L ++ +
Sbjct: 223 STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGG 282
Query: 378 ATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHP---TKLS 434
+ + ++ + RE + L+ A HK+ +S ++ K S
Sbjct: 283 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS 342
Query: 435 TIISGAYDGEVKVWNLTSQS 454
+ DG + +W++ S
Sbjct: 343 QFCTTGMDGGMSIWDVRSLE 362
Score = 37.9 bits (86), Expect = 0.003
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 144 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHP---TKLSTIISGAYDGEVKV 200
RE + L+ A HK+ +S ++ K S + DG + +
Sbjct: 296 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI 355
Query: 201 WNLTSQS 207
W++ S
Sbjct: 356 WDVRSLE 362
Score = 36.8 bits (83), Expect = 0.007
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 6/86 (6%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
G D + + + D + + H V + L G
Sbjct: 280 FGGRLD-VPKQSSQRGLTARERFQNLDKKASSEGSAAAG-AGLDSLHKNSVSQISVLSGG 337
Query: 229 ----SQFLSVGIDNTIKTWSSELSES 250
SQF + G+D + W ES
Sbjct: 338 KAKCSQFCTTGMDGGMSIWDVRSLES 363
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 77.5 bits (189), Expect = 8e-16
Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEET--------SITYQLQKLFVNLQTSTR 53
TCYLN+ +QAL+ + R+ + + ++ I ++++ F NLQ +
Sbjct: 15 TCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSF 74
Query: 54 PAVETTDLTRSFG---------WESSDAWQQHDIQELCRVLFDALETQFKG 95
+V L + ++Q D +EL LF ++ F
Sbjct: 75 KSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD 125
Score = 68.7 bits (166), Expect = 6e-13
Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 22/171 (12%)
Query: 473 PAVETTDLTRSFGWESSD-----AWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINN 527
P V L + + + ++Q D +EL LF ++ F D +
Sbjct: 79 PVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFG---------DKFSE 129
Query: 528 LYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGA 587
++ + + +K + + ++ D L G++ + + E L+
Sbjct: 130 DFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLL--------EGLNEK 181
Query: 588 NQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
+ D G K + P LT+ +RF + ST + K+ KV
Sbjct: 182 IEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVV 232
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 75.3 bits (183), Expect = 3e-15
Identities = 42/338 (12%), Positives = 102/338 (30%), Gaps = 34/338 (10%)
Query: 164 PFVANLDGHKDG-ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDV 222
P L GH I+CL + I+GA D ++V++ ++ + HDG V +
Sbjct: 3 PQRTTLRGHMTSVITCLQFEDNYV---ITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL 59
Query: 223 CFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD 282
+ G +S D T++ W + H+ H + + K + + +
Sbjct: 60 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 283 QCQLWEHERNEPIRAFS--------------------WNVDSLHHVQFNPIDKHILASCA 322
+W+ + + + V+ +I+ S +
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178
Query: 323 SDRSIILYDTRATVLSRNPDEYLRETKTSIHR------IPRNIDPSLHPFEGPREYVRAL 376
D ++I++D + ++I+ I ++D ++ ++ +
Sbjct: 179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 238
Query: 377 NATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTI 436
V A + + H + + + + I
Sbjct: 239 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVS--DNI 296
Query: 437 ISGAYDGEVKVWNLTSQSCVQ-TYQAHDGHVRDTSTRP 473
+ + + ++NL S V + + +
Sbjct: 297 LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG 334
Score = 49.1 bits (115), Expect = 8e-07
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Query: 172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ-TYQAHDGHVRDVCFLPDGSQ 230
H + + + + I+ + + ++NL S V + V F
Sbjct: 281 HTNLSAITTFYVS--DNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-L 337
Query: 231 FLSVGIDNTIKTWSSELS 248
+V D + S
Sbjct: 338 VAAVEKDGQSFLEILDFS 355
Score = 33.7 bits (75), Expect = 0.055
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 203
K AN+ D I + L + + DG+ + L
Sbjct: 314 KLVHANILKDADQIWSVNFKGKTL--VAAVEKDGQSFLEIL 352
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 73.7 bits (179), Expect = 1e-14
Identities = 37/346 (10%), Positives = 88/346 (25%), Gaps = 41/346 (11%)
Query: 164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC------VQTYQAHDG 217
H I ++ S +S + DG +KVW+ ++ H
Sbjct: 5 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 218 HVRDVCFL-------PDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISH 270
+ V L + + + + + V + ++ S
Sbjct: 62 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL---DLLDSDMK 118
Query: 271 QRKSKIFATCGDQCQLWEHE-----RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDR 325
+ +L H + ++ + L +
Sbjct: 119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE 178
Query: 326 SIILYDTRATVLSRNPDEYL--------RETKTSIHRIPRNIDPSLHPFEGPREYVRALN 377
S + AT + + + + P S H +R++
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238
Query: 378 ATKLERVFAKPFVGPREYVRAL--------NATKLERVFAKPFVANLDGHKDGISCLAKH 429
+ + A L + + H + L+ +
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298
Query: 430 PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAV 475
+ T+ S +DG+++ W++ ++ + T H + AV
Sbjct: 299 DSG-ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAV 343
Score = 52.2 bits (123), Expect = 1e-07
Identities = 15/113 (13%), Positives = 39/113 (34%), Gaps = 6/113 (5%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD---- 221
H + L+ + + T+ S +DG+++ W++ ++ + T H +
Sbjct: 282 SLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340
Query: 222 VCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKS 274
+ G G+ + +K ++ + SI R++
Sbjct: 341 LAVDEHGDSLAEPGVFD-VKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 392
Score = 46.8 bits (109), Expect = 5e-06
Identities = 39/352 (11%), Positives = 96/352 (27%), Gaps = 44/352 (12%)
Query: 149 VRALNATKLERVFAKPFVANLDGHKDGIS------CLAKHPTKLSTIISGAYDGEVKVWN 202
++ + L+ K + HK G+ + + +L + + ++ G++ +
Sbjct: 36 LKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR 95
Query: 203 LTSQSCVQTYQAHDGH----------VRDVCFLPDGSQ-----FLSVGIDNTIKTWS--- 244
+T + + + + + ++ + T W
Sbjct: 96 ITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155
Query: 245 --SELSESDHIVPLHTIISKSVISSISHQR--------KSKIFATCGDQCQLWEHERNEP 294
E + + +V S ++ + + + AT + + E +
Sbjct: 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL 215
Query: 295 IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHR 354
+++ N I + + S I +D+ + + E S
Sbjct: 216 RPLYNFESQHSMINNSNSI-RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS-LS 273
Query: 355 IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVA 414
+P + + +V +L+ G +R + ER+
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLC--SAGWDGKLRFWDVKTKERI------T 325
Query: 415 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
L+ H D I S A G V L + +
Sbjct: 326 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESL 377
Score = 41.0 bits (94), Expect = 4e-04
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 9/75 (12%)
Query: 411 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC------VQTYQAHDG 464
H I ++ S +S + DG +KVW+ ++ H
Sbjct: 5 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 465 HVRDTSTRPAVETTD 479
+ A+E
Sbjct: 62 GLHHVDVLQAIERDA 76
Score = 37.5 bits (85), Expect = 0.005
Identities = 19/130 (14%), Positives = 30/130 (23%), Gaps = 14/130 (10%)
Query: 201 WNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTII 260
S AH V + F G S G D ++ W + E + +H
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333
Query: 261 SKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS 320
+ ++ A G + L
Sbjct: 334 IEIEEDILAVDEHGDSLAEPGVFD--------------VKFLKKGWRSGMGADLNESLCC 379
Query: 321 CASDRSIILY 330
DRSI +
Sbjct: 380 VCLDRSIRWF 389
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 72.5 bits (176), Expect = 2e-14
Identities = 46/303 (15%), Positives = 98/303 (32%), Gaps = 18/303 (5%)
Query: 169 LDGHKDGI-SCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD 227
L GH D + +CL ++ +SG+ D +KVW+ + C++T H G V +
Sbjct: 12 LKGHDDHVITCLQFCGNRI---VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68
Query: 228 GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLW 287
S + S + + K + + ++W
Sbjct: 69 IIISGSTDRTLKVWNA------ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122
Query: 288 EHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA----TVLSRNPDE 343
+ E + + +V V+ D + S A D + ++D L + +
Sbjct: 123 DIETGQCLHVLMGHV---AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179
Query: 344 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT- 402
IH + ++D S+ ++ ++T
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTV 239
Query: 403 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH 462
K+ + + L G S + + +I+ + DG VK+W+L + ++
Sbjct: 240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299
Query: 463 DGH 465
+
Sbjct: 300 ESG 302
Score = 61.0 bits (146), Expect = 1e-10
Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 16/288 (5%)
Query: 201 WNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTII 260
W + + HD HV C G++ +S DNT+K WS+ + + HT
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT-- 57
Query: 261 SKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS 320
+ S + I + ++W E E I + ++ + +
Sbjct: 58 --GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS--- 112
Query: 321 CASDRSIILYDTRA----TVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRAL 376
+ D ++ ++D VL + + D + ++ E
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT 172
Query: 377 NATKLERVFAKPFVGPREYVRALNAT-KLERVFAKPFVANLDGHKDGISCLAKHPTKLST 435
RV++ F G +L+ + ++ V + L GH+ S + +
Sbjct: 173 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NI 229
Query: 436 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS 483
++SG D VK+W++ + C+QT Q + H + + +T S
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS 277
Score = 57.5 bits (137), Expect = 1e-09
Identities = 28/185 (15%), Positives = 70/185 (37%), Gaps = 16/185 (8%)
Query: 156 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH 215
K+ + + L GH + + L ++SG+ D ++VW++ + +C+ T H
Sbjct: 160 KVWDPETETCLHTLQGHTNRVYSLQFDGI---HVVSGSLDTSIRVWDVETGNCIHTLTGH 216
Query: 216 DGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK 275
+ + +S D+T+K W + + +S ++ + +
Sbjct: 217 QSLTSGMEL--KDNILVSGNADSTVKIWDIK-TGQCLQTLQGPNKHQSAVTCLQFNKNFV 273
Query: 276 IFATCGDQCQLWEHERNEPIRAFSWNVDSLHH-----VQFNPIDKHILASCASDRS---- 326
I ++ +LW+ + E IR ++ + K + A + + +
Sbjct: 274 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETK 332
Query: 327 IILYD 331
+++ D
Sbjct: 333 LLVLD 337
Score = 51.0 bits (120), Expect = 2e-07
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 416 LDGHKDGI-SCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPA 474
L GH D + +CL ++ +SG+ D +KVW+ + C++T H G V + R
Sbjct: 12 LKGHDDHVITCLQFCGNRI---VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68
Query: 475 VETTDLTRSFGWESSDAWQQHDIQELC 501
+ + T + +
Sbjct: 69 IIISGSTDRTLKVWNAETGECIHTLYG 95
Score = 44.8 bits (104), Expect = 2e-05
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY 212
+ K+ + + L G S + + +I+ + DG VK+W+L + ++
Sbjct: 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 296
Query: 213 QA-----HDGHVRDVCFLPDGSQFLSVGIDNTIKT 242
G V + + T +T
Sbjct: 297 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 71.8 bits (174), Expect = 3e-14
Identities = 38/293 (12%), Positives = 84/293 (28%), Gaps = 26/293 (8%)
Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
G+ CL K+ +SG D +K+W+ + C + H G V + +
Sbjct: 13 ETSKGVYCLQYDDQKI---VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--- 66
Query: 231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHE 290
V I + + + + I + + + + +W+
Sbjct: 67 ---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123
Query: 291 RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVL------------- 337
I V V D + S + DR+I +++T
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 183
Query: 338 -SRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYV 396
+ + + R+ + E + +R+ + + G +
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 243
Query: 397 RALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
+ A + L H + L I+S ++D + +W+
Sbjct: 244 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD 293
Score = 52.2 bits (123), Expect = 8e-08
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 159 RVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS---------QSCV 209
R++ A L + + I+SGAYDG++KVW+L + C+
Sbjct: 201 RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260
Query: 210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW 243
+T H G V + F D Q +S D+TI W
Sbjct: 261 RTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 292
Score = 49.1 bits (115), Expect = 7e-07
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 418 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 467
G+ CL K+ +SG D +K+W+ + C + H G V
Sbjct: 13 ETSKGVYCLQYDDQKI---VSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59
Score = 46.4 bits (108), Expect = 4e-06
Identities = 43/256 (16%), Positives = 80/256 (31%), Gaps = 43/256 (16%)
Query: 208 CVQTYQAHDGHVRDV-CFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVIS 266
+Q + V C D + +S DNTIK W E I+ HT
Sbjct: 4 SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHT-------G 56
Query: 267 SISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRS 326
S+ + + G + + V + ++ +C+ DRS
Sbjct: 57 SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS 116
Query: 327 IILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA 386
I ++D + + + D ++ N + E
Sbjct: 117 IAVWDMASP---TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE---- 169
Query: 387 KPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVK 446
FV L+GHK GI+CL ++SG+ D ++
Sbjct: 170 -------------------------FVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIR 201
Query: 447 VWNLTSQSCVQTYQAH 462
+W++ +C++ + H
Sbjct: 202 LWDIECGACLRVLEGH 217
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 70.9 bits (172), Expect = 1e-13
Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYE----NDIAEETSITYQLQKLFVNLQTSTRPAVE 57
TCY+N+ +Q + PE ++A+ ++ ++A IT L+ LF ++ ++ ++
Sbjct: 13 TCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSS-SIP 71
Query: 58 TTDLTRSFGWESS--------DAWQQHDIQELCRVLFDALETQFKGSK 97
L + + Q D E + L+ + + +
Sbjct: 72 PIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIE 119
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 69.8 bits (169), Expect = 1e-13
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDIAE----ETSITYQLQKLFVNLQTSTRPAVE 57
TC++NS++Q L T E R+ + Y D+ T++ + KL + TS+ V
Sbjct: 12 TCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVV 71
Query: 58 TTDLTRSFGWESSDAW---QQHDIQELCRVLFDALETQFKGSK 97
+ ++ + + Q D QE R L D L +
Sbjct: 72 SPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVT 114
Score = 52.4 bits (124), Expect = 6e-08
Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 27/166 (16%)
Query: 492 WQQHDIQELCRVLFDALETQFKGS-------------------------KTTGDQADLIN 526
+ Q D QE R L D L + K + I
Sbjct: 90 YNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIG 149
Query: 527 NLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDG 586
+L+ G+++ + C +CG + D F D+ LP+ G +++ MR F + + LDG
Sbjct: 150 DLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLDG 207
Query: 587 ANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIK 632
+ C +C + K FP +L LHL RF ++
Sbjct: 208 DEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLT 253
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 69.2 bits (167), Expect = 2e-13
Identities = 41/293 (13%), Positives = 87/293 (29%), Gaps = 22/293 (7%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFL 225
+ + GH GI+ L +P +ISG+YDG + W+ +S +Q H + +
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDN- 54
Query: 226 PDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQ 285
++ S+ D+T+K E + + + + +++ I +
Sbjct: 55 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114
Query: 286 LWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVL----SRNP 341
+ ++ + S + RA S +
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174
Query: 342 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA 401
+ + + + E + A +
Sbjct: 175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234
Query: 402 T-KLERVF----AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
++ + L+ HKDG++ L ST++S D +K WN
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP--STLVSSGADACIKRWN 285
Score = 45.7 bits (106), Expect = 9e-06
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTR 472
+ + GH GI+ L +P +ISG+YDG + W+ +S +Q H +
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNS 55
Query: 473 PAVETTDLTRSFGWESSDAWQQHDIQELCRVLF 505
A E + ++ + + + +
Sbjct: 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASA 88
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 69.4 bits (168), Expect = 3e-13
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 2 TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEE------TSITYQLQKLFVNLQTSTRPA 55
TCY+NS++Q L P + + Y++DI + + + L T
Sbjct: 24 TCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY 83
Query: 56 VETTDLTRSFGW--ESSDAWQQHDIQELCRVLFDALETQFKGSK 97
+ D + G + + Q D QEL L D L +
Sbjct: 84 ISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKAD 127
Score = 64.0 bits (154), Expect = 1e-11
Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 29/184 (15%)
Query: 481 TRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQAD----------------- 523
T + + Q D QEL L D L + +
Sbjct: 92 TIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQ 151
Query: 524 --------LINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAM 575
+I L+QG+ + V+CL C + + F+ + LP+ + + +
Sbjct: 152 KHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS----KCTLQDCL 207
Query: 576 RAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLND 635
R F + E L N+++C C + D+ K ++ + P +L +HL RF +D +++ +
Sbjct: 208 RLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSV 267
Query: 636 KVEC 639
Sbjct: 268 DFPL 271
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 67.3 bits (162), Expect = 7e-13
Identities = 39/295 (13%), Positives = 81/295 (27%), Gaps = 16/295 (5%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY-QAHDGHVRDVCFLPD 227
GH I+ L+ T+ S +G + W++++ + + H + +
Sbjct: 8 RYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-TS 65
Query: 228 GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLW 287
+V D+ +K + S D + +S + A C ++
Sbjct: 66 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125
Query: 288 EHERNEP--------IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSR 339
H + A S + + + S AS + A + S
Sbjct: 126 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185
Query: 340 NPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL 399
+ + FE + K+ V P
Sbjct: 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 245
Query: 400 NATKL---ERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT 451
N+ + + P + ++ + TI+S D +K WN+
Sbjct: 246 NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQDSNIKFWNVP 298
Score = 55.4 bits (131), Expect = 7e-09
Identities = 26/273 (9%), Positives = 61/273 (22%), Gaps = 11/273 (4%)
Query: 207 SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE---------SDHIVPLH 257
S Q H+ + + DG S + I +W + I +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 258 TIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHI 317
T + + + A + V + + KHI
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 318 LASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALN 377
+ + ++ ++ + D+ ++ E A
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 378 ATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTII 437
+ V + + + + + +
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV--SWSPDNVRLA 240
Query: 438 SGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTS 470
+G+ D V VWN+ S + +
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN 273
Score = 34.2 bits (76), Expect = 0.041
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT 204
P + ++ + TI+S D +K WN+
Sbjct: 259 HPIIIKGAHAMSSVNSVIWLNET--TIVSAGQDSNIKFWNVP 298
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 62.6 bits (150), Expect = 3e-11
Identities = 25/303 (8%), Positives = 60/303 (19%), Gaps = 34/303 (11%)
Query: 172 HKDGISCLAKHPTKLSTIISGAYDGE---------VKVWNLTSQSCVQTYQAHDGHVRDV 222
L + + ++ G+ V + S + + Y H
Sbjct: 5 QTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVA 64
Query: 223 CFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD 282
P G S + ++ W + + + S + K G
Sbjct: 65 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR 124
Query: 283 QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPD 342
+ + + + + +
Sbjct: 125 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD------------DNTVA 172
Query: 343 EYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT 402
+ + P + A G + N
Sbjct: 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA-------------STGGDGTIVLYNGV 219
Query: 403 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH 462
+ + + G + I S + D +K+WN+ + +T
Sbjct: 220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 279
Query: 463 DGH 465
Sbjct: 280 TRI 282
Score = 53.8 bits (127), Expect = 2e-08
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGH-VRDVCFLPDGSQFLSVGIDNTIKTWSS 245
+ I S + D +K+WN+ + +T + + + +S+ + I +
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
Query: 246 E 246
E
Sbjct: 311 E 311
Score = 37.6 bits (85), Expect = 0.003
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 194 YDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHI 253
Y+G + AH G V + + PDG++ S D TIK W+ + +
Sbjct: 216 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 275
Query: 254 VPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHE 290
+P+ T I + I K + + + E
Sbjct: 276 IPVGTRIEDQQLGIIWT--KQALVSISANGFINFVNPE 311
Score = 33.0 bits (73), Expect = 0.10
Identities = 39/284 (13%), Positives = 75/284 (26%), Gaps = 29/284 (10%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVW--NLTSQSCVQTYQAHDGHVRDVCFLP 226
H + P+ SG G V++W T+ T G V+D+ +
Sbjct: 54 YTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112
Query: 227 DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQL 286
+ + +VG L R +I + D
Sbjct: 113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172
Query: 287 WEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLR 346
++ H D + AS D +I+LY+
Sbjct: 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV------------- 219
Query: 347 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLER 406
T + ++ + + TK+ A + + + K+E+
Sbjct: 220 -DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI----KIWNVATLKVEK 274
Query: 407 VFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
G + L TK ++S + +G + N
Sbjct: 275 TIPV-------GTRIEDQQLGIIWTK-QALVSISANGFINFVNP 310
Score = 32.6 bits (72), Expect = 0.12
Identities = 13/88 (14%), Positives = 21/88 (23%), Gaps = 3/88 (3%)
Query: 416 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVW--NLTSQSCVQTYQAHDGHVRDTSTRP 473
H + P+ SG G V++W T+ T G V+D S
Sbjct: 54 YTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112
Query: 474 AVETTDLTRSFGWESSDAWQQHDIQELC 501
+ +
Sbjct: 113 ESKRIAAVGEGRERFGHVFLFDTGTSNG 140
Score = 28.3 bits (61), Expect = 2.9
Identities = 8/64 (12%), Positives = 16/64 (25%), Gaps = 9/64 (14%)
Query: 419 HKDGISCLAKHPTKLSTIISGAYDGE---------VKVWNLTSQSCVQTYQAHDGHVRDT 469
L + + ++ G+ V + S + + Y H
Sbjct: 5 QTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVA 64
Query: 470 STRP 473
T P
Sbjct: 65 KTSP 68
Score = 27.6 bits (59), Expect = 5.0
Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Query: 245 SELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDS 304
SE S++ L + + + KI G ++ +
Sbjct: 1 SEFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQ 60
Query: 305 LHHVQFNPIDKHILASCASDRSIILY 330
+ +P + AS ++ ++
Sbjct: 61 TTVAKTSPSG-YYCASGDVHGNVRIW 85
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 60.2 bits (144), Expect = 2e-10
Identities = 8/73 (10%), Positives = 17/73 (23%), Gaps = 2/73 (2%)
Query: 172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF 231
H+ + L +S D + W + + V D
Sbjct: 264 HESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYI 321
Query: 232 LSVGIDNTIKTWS 244
++ D +
Sbjct: 322 VTGSGDKKATVYE 334
Score = 59.4 bits (142), Expect = 4e-10
Identities = 36/298 (12%), Positives = 78/298 (26%), Gaps = 29/298 (9%)
Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT-----YQAHDGHVRDVCFL 225
H + + + + + G VKVW+++ D ++R L
Sbjct: 49 NHGEVVCAVTISNP--TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106
Query: 226 PDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQ 285
PDG L VG + + + + + I T + + + F+ C D
Sbjct: 107 PDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165
Query: 286 LWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYL 345
N+ + D L + D ++ +D R + D
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS 225
Query: 346 RETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF-------------VGP 392
+ + + +V + +L + G
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285
Query: 393 REYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
+ A +F + I++G+ D + V+ +
Sbjct: 286 DNLLNAWRTPYGASIF-------QSKESSSVLSCDISVDD-KYIVTGSGDKKATVYEV 335
Score = 35.2 bits (79), Expect = 0.021
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 418 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT-----YQAHDGHVRDTSTR 472
H + + + + + G VKVW+++ D ++R
Sbjct: 49 NHGEVVCAVTISNP--TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106
Query: 473 P 473
P
Sbjct: 107 P 107
Score = 27.5 bits (59), Expect = 5.3
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 251 DHIVPLHTIISKSVISSISHQRKSKIFATCGDQC-QLWEHERNEPIRAFSWNVDSLHH-- 307
H ++T+ V+ +++ ++ T G C ++W+ S
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNY 99
Query: 308 ---VQFNPIDKHILASC 321
+ P ++
Sbjct: 100 IRSCKLLPDGCTLIVGG 116
Score = 26.7 bits (57), Expect = 8.8
Identities = 8/149 (5%), Positives = 26/149 (17%), Gaps = 2/149 (1%)
Query: 168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD 227
+ + I P + + + + L
Sbjct: 92 DCLNRDNYIRSCKLLPD--GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149
Query: 228 GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLW 287
+ + + +V + +K++ D
Sbjct: 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209
Query: 288 EHERNEPIRAFSWNVDSLHHVQFNPIDKH 316
R + + + P +
Sbjct: 210 WDLREGRQLQQHDFTSQIFSLGYCPTGEW 238
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 58.3 bits (139), Expect = 7e-10
Identities = 25/284 (8%), Positives = 65/284 (22%), Gaps = 11/284 (3%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ-FLSVGIDNTIKTWSSE-- 246
I+ + + V ++TS T + PDG++ +++ N + +
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64
Query: 247 ------LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSW 300
+ S + K V + + T + P+
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124
Query: 301 NVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNID 360
+V N + + + I + + +
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184
Query: 361 PSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHK 420
+ + + N + A +
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244
Query: 421 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG 464
D + +A P ++ ++ V V + + + T
Sbjct: 245 D-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKN 287
Score = 32.5 bits (72), Expect = 0.13
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG 217
A + D + +A P ++ ++ V V + + + T
Sbjct: 237 TARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKN 287
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 54.1 bits (128), Expect = 2e-08
Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 5/92 (5%)
Query: 167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP 226
L+ S + G + +++ ++ ++ D+
Sbjct: 270 IPLESSILIYSVPVHGE-FAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSA 324
Query: 227 DGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
D + D I T+ E E + V
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTVETDK 356
Score = 51.4 bits (121), Expect = 2e-07
Identities = 24/309 (7%), Positives = 67/309 (21%), Gaps = 37/309 (11%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID--NTIKTWSSEL 247
I+ G+ + +++ ++ +R V D G + + +
Sbjct: 18 IAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT 75
Query: 248 SESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHH 307
+++ + + L + R+ +
Sbjct: 76 GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 135
Query: 308 VQFNP------IDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIH-------- 353
+ KH ++I +YD + E + +
Sbjct: 136 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY 195
Query: 354 -------RIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLER 406
P + + + +V L P E +R
Sbjct: 196 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR 255
Query: 407 VFAKPF-------VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY 459
+ L+ S + G + +++ + +
Sbjct: 256 SSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLLKYDVKT----RKV 310
Query: 460 QAHDGHVRD 468
++ D
Sbjct: 311 TEVKNNLTD 319
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 52.1 bits (123), Expect = 8e-08
Identities = 33/329 (10%), Positives = 75/329 (22%), Gaps = 49/329 (14%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHD--GHVRDVCFLPDGSQ-FLSVGIDNTIKTWSS 245
I++ A ++ V + + + D P G + +V ++
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 246 E---------------LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHE 290
+S L I + + F + L++ E
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 291 RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKT 350
+AF + + + D L D ++ + V + + ET
Sbjct: 124 TLSRRKAFEAP-RQITMLAWAR-DGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 351 S------------------IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGP 392
R P + T + +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
Query: 393 REYVRALNATKLERVFAKPFVANLD----------GHKDGISCLAKHPTKLSTIISGAYD 442
+ A+N K A + + D + ST+ G
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDG-STVWLGGAL 300
Query: 443 GEVKVWNLTSQSCVQTYQAHDGHVRDTST 471
G++ ++ + ++
Sbjct: 301 GDLAAYDAETLEKKGQVDLPGNASMSLAS 329
Score = 41.7 bits (96), Expect = 2e-04
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
+ A +P K + ++ ++L + ++ V DG
Sbjct: 236 VRIMDVFYFSTAVNPAK---TRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDG 291
Query: 229 SQFLSVGIDNTIKTWSSE 246
S G + + +E
Sbjct: 292 STVWLGGALGDLAAYDAE 309
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 52.0 bits (123), Expect = 1e-07
Identities = 25/327 (7%), Positives = 75/327 (22%), Gaps = 50/327 (15%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDG-HVRDVCFLPDGSQ-FLSVGIDNTIKTW--- 243
+I Y + V ++ S + ++ D PD ++ I
Sbjct: 11 MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70
Query: 244 -------------SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHE 290
E+ S + + + + QR + + + +++
Sbjct: 71 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 130
Query: 291 RNEPIRAFS-WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATV------------- 336
+ + + ++ D + + + + + TV
Sbjct: 131 DGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYS 190
Query: 337 ---------------LSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKL 381
R ++ + L
Sbjct: 191 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL 250
Query: 382 ERVFAKPFVGPREYVRALNATKLERVF--AKPFVANLDGHKDGISCLAKHPTKLSTIISG 439
++ P++ + + + + C+A + G
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKG-DKLYLG 309
Query: 440 AYDGEVKVWNLTSQSCVQTYQAHDGHV 466
++ V+N + V+ + G +
Sbjct: 310 GTFNDLAVFNPDTLEKVKNIKLPGGDM 336
Score = 33.2 bits (74), Expect = 0.10
Identities = 16/252 (6%), Positives = 45/252 (17%), Gaps = 13/252 (5%)
Query: 224 FLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSIS-HQRKSKIFATC-- 280
+ N + SD + + K + +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVD---VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60
Query: 281 GDQCQLWEHERNEPIRAFSWN------VDSLHHVQFNPIDKHILASCASDRSIILYDTRA 334
+ + + + + S++ +P K + A+ + + +
Sbjct: 61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120
Query: 335 TVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPRE 394
+ P L A V +
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALP 180
Query: 395 YVRALNATKLERVFAKPFVANLDGHKD-GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ 453
+ H+ + +A+ + +L +
Sbjct: 181 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 240
Query: 454 SCVQTYQAHDGH 465
A
Sbjct: 241 KTHTQEFADLTE 252
Score = 32.8 bits (73), Expect = 0.13
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 219
+ G ++ V+N + V+ + G +
Sbjct: 304 DKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 51.8 bits (122), Expect = 1e-07
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDV---CFLPDGSQFLSVGIDNTIKTW 243
+ D ++VW++T+ CVQ + + + + +S+ +D T+ +
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Score = 47.6 bits (111), Expect = 2e-06
Identities = 29/309 (9%), Positives = 67/309 (21%), Gaps = 40/309 (12%)
Query: 176 ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS--CVQTYQAHDGH-VRDVCFLP--DGSQ 230
+ L+ PT + V+ + V + H V V F P
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 231 FLSVGIDNTIKTWSSELSESDHIV--------PLHTIISKSVISSISHQRKSKIFATCGD 282
S + W + + V + + +R + +
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139
Query: 283 QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPD 342
+ + S + ++ + D S++ Y S +
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199
Query: 343 EYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT 402
+ ++ G + +
Sbjct: 200 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD------------------------- 234
Query: 403 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH 462
+ D A + D ++VW++T+ CVQ +
Sbjct: 235 --GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292
Query: 463 DGHVRDTST 471
+ +
Sbjct: 293 KQQLGNQQV 301
Score = 46.4 bits (108), Expect = 5e-06
Identities = 46/299 (15%), Positives = 84/299 (28%), Gaps = 38/299 (12%)
Query: 164 PFVANLDGH-KDGISCLAKHPTKLSTII-SGAYDGEVKVWNLTSQSCVQT--------YQ 213
P V GH ++ + P K S + SG G+V VW T + +Q
Sbjct: 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ 112
Query: 214 AHDGHVRDVCFLPDGSQFL--SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQ 271
G + D+ + +G + G DN S + S V H+ + + Q
Sbjct: 113 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ---RINACHLKQ 169
Query: 272 RKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
+ T GD + ++ + S + ++
Sbjct: 170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV-----EFSPDSGEFVITV 224
Query: 332 TRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG 391
+S + K + + A RV+
Sbjct: 225 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW------ 278
Query: 392 PREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
+ +K + + LD + G + T IIS + DG + + L
Sbjct: 279 ------DVTTSKCVQKW------TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 45.9 bits (107), Expect = 9e-06
Identities = 27/280 (9%), Positives = 58/280 (20%), Gaps = 10/280 (3%)
Query: 187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE 246
S I G V+V++ + + D V P + G +S
Sbjct: 69 SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 128
Query: 247 LSESDHIVPLHTI---ISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVD 303
+ + + I F C D E + +
Sbjct: 129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTE 187
Query: 304 SLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSL 363
H I+ + A Y + + + + D
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG-- 245
Query: 364 HPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGI 423
+ A + + A + +A + I
Sbjct: 246 --WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EI 302
Query: 424 SCLAKHPT-KLSTIISGAYDGEVKVWNLTSQSCVQTYQAH 462
+ K D + + + S +++
Sbjct: 303 DSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342
Score = 34.8 bits (78), Expect = 0.028
Identities = 5/58 (8%), Positives = 14/58 (24%), Gaps = 1/58 (1%)
Query: 172 HKDGISCLAKHPT-KLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
I + K D + + + S +++ + + G
Sbjct: 298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 45.4 bits (106), Expect = 1e-05
Identities = 28/326 (8%), Positives = 71/326 (21%), Gaps = 25/326 (7%)
Query: 148 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS 207
+V F++ G S A T + G V+V++ +
Sbjct: 49 WVSCAGCGVTLGHSLGAFLSLAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFL 107
Query: 208 CVQTYQAHDGHVRD-------VCFLPDGSQFLSVGI-DNTIKTWSSELSESDHIVPLHTI 259
+ + D + + L + S + D + +
Sbjct: 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC 167
Query: 260 ISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILA 319
I + + P A + A
Sbjct: 168 ------FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC-----TGAQNCSSQA 216
Query: 320 SCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNAT 379
+ A+ ++++ +++L + T I N +
Sbjct: 217 AQANYPGMLVWAVASSILQGDIPA---AGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273
Query: 380 KLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPT-KLSTIIS 438
+ + R + A T + + + +
Sbjct: 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYAN 332
Query: 439 GAYDGEVKVWNLTSQSCVQTYQAHDG 464
A + +++ S + + G
Sbjct: 333 SAGTEVLDIYDAASDQDQSSVELDKG 358
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 45.3 bits (106), Expect = 1e-05
Identities = 43/291 (14%), Positives = 75/291 (25%), Gaps = 18/291 (6%)
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS 248
++ G++ + + S+ V+ V G L +G D I
Sbjct: 35 SVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAK 93
Query: 249 ESDHIVPLHTIISKS---VISSISHQRKSKIFATCGDQCQLWEH-ERNEPIRAFSWNVDS 304
E + + I ++ + I E EP + S +
Sbjct: 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153
Query: 305 LHHVQFNPIDKHILASCASDRSIILYDTRAT--VLSRNPDEYLRETKTSIHRIPRNIDPS 362
+ ++P + + + + + + T VL N + T TSI P
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-----GAAPF 208
Query: 363 LHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDG 422
L + + A A R ++ K AN K G
Sbjct: 209 LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG---ANFVHPKYG 265
Query: 423 ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
H S + G + V Q G T P
Sbjct: 266 PVWSTSHLGDGSISLIGTDPKNHPQYAWK---KVAELQGQGGGSLFIKTHP 313
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 43.8 bits (102), Expect = 3e-05
Identities = 17/148 (11%), Positives = 41/148 (27%), Gaps = 25/148 (16%)
Query: 189 IISGAYDGEVKVWNLTS--QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW-SS 245
+ Y G V+ + + + + + R + P G Q +V
Sbjct: 178 YLFTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGWRPGGMQQTAVQAKQNRYYVLMH 237
Query: 246 ELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSL 305
+ ++ H P + ++ Q + + L
Sbjct: 238 KGTDGSHKDPGTQVW---------------VYDLKSKQRVARWDLAQQKVE-------PL 275
Query: 306 HHVQFNPIDKHILASCASDRSIILYDTR 333
+Q + DK + + +++ D R
Sbjct: 276 VSIQVSEDDKPLFYGLTATSDLVVMDAR 303
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 43.7 bits (101), Expect = 4e-05
Identities = 22/184 (11%), Positives = 50/184 (27%), Gaps = 9/184 (4%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQ--AHDGHVRDVCFLPDGSQ-FLSVGIDNTIKTWSSE 246
I+ ++ VWNL + + Q G V+ + PD ++ V + + +
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
Query: 247 LSESDHIVPLHTIISKSV----ISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNV 302
+ + + S+ + E + +
Sbjct: 68 PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL 127
Query: 303 DSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPS 362
D H +P ++ + I L+ + E T PR++
Sbjct: 128 DGCHSANISPDNRTLWVPALKQDRICLFTVSDD--GHLVAQDPAEVTTVEGAGPRHMVFH 185
Query: 363 LHPF 366
+
Sbjct: 186 PNEQ 189
Score = 30.6 bits (67), Expect = 0.63
Identities = 7/78 (8%), Positives = 20/78 (25%), Gaps = 4/78 (5%)
Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD---GHVRDVCFLPD 227
+ + P + V++++ V + + R
Sbjct: 227 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS 286
Query: 228 GSQFLSVG-IDNTIKTWS 244
G ++ G + I +
Sbjct: 287 GKYLIAAGQKSHHISVYE 304
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 40.5 bits (94), Expect = 4e-04
Identities = 15/153 (9%), Positives = 38/153 (24%), Gaps = 16/153 (10%)
Query: 195 DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS---------- 244
G++ + + ++ V G +G D +
Sbjct: 41 AGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 99
Query: 245 --SELSESDHIV--PLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSW 300
SE+ I + K I+ + I + + + R +
Sbjct: 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 159
Query: 301 NVDSLHH-VQFNPIDKHILASCASDRSIILYDT 332
+ + + + + + I+L D
Sbjct: 160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192
>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 28.6 bits (64), Expect = 1.8
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 25/85 (29%)
Query: 529 YQGKMRDYVKCLECGTEKSREDTFLDIPL---------------PVRPFGSSVAYGDIIE 573
YQ K +K ++ E E F+DI + PVR + G ++E
Sbjct: 58 YQKKGSMLLKVVD---ETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADT---VGIVVE 111
Query: 574 AMRAFVRPETLDGANQYFCDKCGKK 598
R D +++C C +
Sbjct: 112 QDR---PGGENDKI-RWYCSHCRQV 132
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 28.5 bits (62), Expect = 2.3
Identities = 11/95 (11%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 219 VRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFA 278
+ ++ PDG+ F++ I + + + ++ H +S ++ + A
Sbjct: 30 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGK------VSGLAFTSNGDLVA 83
Query: 279 TCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPI 313
T + + + + + N I
Sbjct: 84 TGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGI 118
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase
{Ralstonia metallidurans [TaxId: 119219]}
Length = 174
Score = 26.6 bits (59), Expect = 5.8
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 558 PVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKK 598
P RP S +IE R LDG +++CD CG
Sbjct: 97 PQRPEAGSA--CLVIERQR---PAGMLDGF-EWYCDACGHL 131
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 26.8 bits (59), Expect = 9.8
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 11/73 (15%)
Query: 183 PTKLSTIISGAYDGEVKVWNLTS-----------QSCVQTYQAHDGHVRDVCFLPDGSQF 231
P I +G V V + + + F G+ +
Sbjct: 267 PDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAY 326
Query: 232 LSVGIDNTIKTWS 244
++ ID+ + W+
Sbjct: 327 TTLFIDSQVCKWN 339
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.412
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,382,376
Number of extensions: 109410
Number of successful extensions: 558
Number of sequences better than 10.0: 1
Number of HSP's gapped: 422
Number of HSP's successfully gapped: 145
Length of query: 639
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 548
Effective length of database: 1,158,166
Effective search space: 634674968
Effective search space used: 634674968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)