BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18074
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G A DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 26 TKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 85 SASDDKTLKIWDVSSGKCL 103
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 82 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 141 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 187
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 103
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 104 SASDDKTLKIWDVSSGKCL 122
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 101 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 160 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 206
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 47 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 105
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 106 SASDDKTLKIWDVSSGKCL 124
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 103 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 162 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 208
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 87
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 88 SASDDKTLKIWDVSSGKCL 106
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 85 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 144 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 190
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 85 SASDDKTLKIWDVSSGKCL 103
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 82 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 141 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 187
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 40 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 98
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 99 SASDDKTLKIWDVSSGKCL 117
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 96 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 155 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 201
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 85 SASDDKTLKIWDVSSGKCL 103
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 82 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 141 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 187
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 87
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 88 SASDDKTLKIWDVSSGKCL 106
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 85 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 144 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 190
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 81
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 82 SASDDKTLKIWDVSSGKCL 100
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 79 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 138 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 184
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 81
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 82 SASDDKTLKIWDVSSGKCL 100
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 79 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 138 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 184
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 24 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 82
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 83 SASDDKTLKIWDVSSGKCL 101
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 80 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 139 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 185
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 77
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 78 SASDDKTLKIWDVSSGKCL 96
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 75 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 134 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 180
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 87
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 88 SASDDKTLKIWDVSSGKCL 106
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 85 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 144 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 190
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 85 SASDDKTLKIWDVSSGKCL 103
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 82 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 141 TGMCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 187
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 28 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 86
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 87 SASDDKTLKIWDVSSGKCL 105
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 84 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 143 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 189
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 85 SASDDKTLKIWDVSSGKCL 103
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 82 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 141 TGMCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 187
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV+SV +SP G + DK ++++ A+ G ++ ++ WS D+ ++
Sbjct: 22 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 80
Query: 94 SASDEMNLRVWKAHASEKL 112
SASD+ L++W + + L
Sbjct: 81 SASDDKTLKIWDVSSGKCL 99
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ +A++D L +D+ L K ++ V +++P V+G +D+S+R++
Sbjct: 78 LLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
G H+ + V + D ++S+S + R+W + + L
Sbjct: 137 TGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASGQCL 183
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT------VWSL 87
T V SV Y+P G F + G D ++ LY G ++ +++V H+ WS
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 88 DNKFVISASDEMNLRVW 104
D + SAS + +++W
Sbjct: 250 DGTKIASASADKTIKIW 266
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 16/164 (9%)
Query: 1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
+ A +F + + D + +D+R + + + + SV + P G+ F G D + RL
Sbjct: 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275
Query: 61 YLAHQGHSRDIY------HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASE---K 111
+ GH +Y + + VT +S+ + + + + VW +E
Sbjct: 276 FDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN 335
Query: 112 LGYVNNKQRQAL-------DYSESLKQKYAHHPQIRRIARHRQV 148
LG + N + D S + + +I + HR++
Sbjct: 336 LGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKI 379
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 20/74 (27%)
Query: 38 TSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASD 97
T+V ++PT L QGHS +Y W+ + +++SAS
Sbjct: 47 TAVSFNPT-----------DLVCCRTLQGHSGKVYSLD---------WTPEKNWIVSASQ 86
Query: 98 EMNLRVWKAHASEK 111
+ L VW A S+K
Sbjct: 87 DGRLIVWNALTSQK 100
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 36.2 bits (82), Expect = 0.011, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 37 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHS--RDIYHTKRMQHVTHTVWSLDNKFVIS 94
V V S G+ ++G +D LRL+ G S R + HTK V +SLDN+ ++S
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK---DVLSVAFSLDNRQIVS 489
Query: 95 ASDEMNLRVW 104
AS + +++W
Sbjct: 490 ASRDRTIKLW 499
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 35 SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQHVTHTVWSLDNKFVI 93
S + ++ + P G F G D + RL+ Y H + +T +S + ++
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 94 SASDEMNLRVWKAHASEKLGYV 115
+ D+ N VW A +++ G +
Sbjct: 287 AGYDDFNCNVWDALKADRAGVL 308
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 85 WSLDNKFVISASDEMNLRVWKAHASEKL 112
W D++ ++SAS + L +W ++ + K+
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKV 90
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 35 SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQHVTHTVWSLDNKFVI 93
S + ++ + P G F G D + RL+ Y H + +T +S + ++
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 94 SASDEMNLRVWKAHASEKLGYV 115
+ D+ N VW A +++ G +
Sbjct: 287 AGYDDFNCNVWDALKADRAGVL 308
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 35 SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQHVTHTVWSLDNKFVI 93
S + ++ + P G F G D + RL+ Y H + +T +S + ++
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 94 SASDEMNLRVWKAHASEKLGYV 115
+ D+ N VW A +++ G +
Sbjct: 287 AGYDDFNCNVWDALKADRAGVL 308
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 35 SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQHVTHTVWSLDNKFVI 93
S + ++ + P G F G D + RL+ Y H + +T +S + ++
Sbjct: 238 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 297
Query: 94 SASDEMNLRVWKAHASEKLGYV 115
+ D+ N VW A +++ G +
Sbjct: 298 AGYDDFNCNVWDALKADRAGVL 319
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 85 WSLDNKFVISASDEMNLRVWKAHASEKL 112
W D++ ++SAS + L +W ++ + K+
Sbjct: 74 WGTDSRLLVSASQDGKLIIWDSYTTNKV 101
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 35 SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQHVTHTVWSLDNKFVI 93
S + ++ + P G F G D + RL+ Y H + +T +S + ++
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 94 SASDEMNLRVWKAHASEKLGYV 115
+ D+ N VW A +++ G +
Sbjct: 287 AGYDDFNCNVWDALKADRAGVL 308
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL----DN 89
+S+V V +SP G+ + DK+++L+ +R+ H + + + +VW + D
Sbjct: 303 SSSVWGVAFSPDGQTIASASDDKTVKLW------NRNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 90 KFVISASDEMNLRVW 104
+ + SASD+ +++W
Sbjct: 357 QTIASASDDKTVKLW 371
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL----DN 89
+S+V V +SP G+ + DK+++L+ +R+ + + + +VW + D+
Sbjct: 385 SSSVRGVAFSPDGQTIASASDDKTVKLW------NRNGQLLQTLTGHSSSVWGVAFSPDD 438
Query: 90 KFVISASDEMNLRVW 104
+ + SASD+ +++W
Sbjct: 439 QTIASASDDKTVKLW 453
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL----DN 89
+S+V V +SP G+ + DK+++L+ +R+ + + + +VW + D
Sbjct: 139 SSSVWGVAFSPDGQTIASASDDKTVKLW------NRNGQLLQTLTGHSSSVWGVAFSPDG 192
Query: 90 KFVISASDEMNLRVW 104
+ + SASD+ +++W
Sbjct: 193 QTIASASDDKTVKLW 207
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL----DN 89
+S+V V +SP G+ + DK+++L+ +R+ + + + +VW + D
Sbjct: 16 SSSVRGVAFSPDGQTIASASDDKTVKLW------NRNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 90 KFVISASDEMNLRVW 104
+ + SASD+ +++W
Sbjct: 70 QTIASASDDKTVKLW 84
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL----DN 89
+S+V V +SP G+ + DK+++L+ +R+ + + + +VW + D
Sbjct: 98 SSSVRGVAFSPDGQTIASASDDKTVKLW------NRNGQLLQTLTGHSSSVWGVAFSPDG 151
Query: 90 KFVISASDEMNLRVW 104
+ + SASD+ +++W
Sbjct: 152 QTIASASDDKTVKLW 166
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL----DN 89
+S+V V + P G+ + DK+++L+ +R+ + + + +VW + D
Sbjct: 262 SSSVNGVAFRPDGQTIASASDDKTVKLW------NRNGQLLQTLTGHSSSVWGVAFSPDG 315
Query: 90 KFVISASDEMNLRVW 104
+ + SASD+ +++W
Sbjct: 316 QTIASASDDKTVKLW 330
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
+S+V V +SP G+ + DK+++L+ G T V +S D + +
Sbjct: 57 SSSVWGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTL-TGHSSSVRGVAFSPDGQTIA 114
Query: 94 SASDEMNLRVW 104
SASD+ +++W
Sbjct: 115 SASDDKTVKLW 125
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
+S+V V +SP G+ + DK+++L+ G T V +S D + +
Sbjct: 180 SSSVWGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTL-TGHSSSVRGVAFSPDGQTIA 237
Query: 94 SASDEMNLRVW 104
SASD+ +++W
Sbjct: 238 SASDDKTVKLW 248
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
+S+V V +SP G+ + DK+++L+ G T V +S D + +
Sbjct: 344 SSSVWGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTL-TGHSSSVRGVAFSPDGQTIA 401
Query: 94 SASDEMNLRVW 104
SASD+ +++W
Sbjct: 402 SASDDKTVKLW 412
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
+S+V V +SP G+ + DK+++L+ G T V +S D + +
Sbjct: 467 SSSVRGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTL-TGHSSSVRGVAFSPDGQTIA 524
Query: 94 SASDEMNLRVW 104
SASD+ +++W
Sbjct: 525 SASDDKTVKLW 535
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVW-------- 85
T V SV +SP R+ V+GG D +LR++ + HT + HT W
Sbjct: 109 TKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG----ECMHT--LSRGAHTDWVSCVRFSP 162
Query: 86 SLDNKFVISASDEMNLRVW 104
SLD ++S + ++VW
Sbjct: 163 SLDAPVIVSGGWDNLVKVW 181
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 37 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISAS 96
+ S+DY P+G + V+G D+++R++ G + + T V D K++ + S
Sbjct: 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS-LTLSIEDGVTTVAVSPGDGKYIAAGS 226
Query: 97 DEMNLRVWKAHAS 109
+ +RVW +
Sbjct: 227 LDRAVRVWDSETG 239
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 21 RQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGH-----SRDIYHTK 75
R+++ L+ D TS V V +S G E++A G +K+ ++Y G S D K
Sbjct: 51 REIDVELHKSLDHTSVVCCVKFSNDG-EYLATGCNKTTQVYRVSDGSLVARLSDDSAANK 109
Query: 76 RMQ------------HVTHTVWSLDNKFVISASDEMNLRVW 104
+ ++ +S D KF+ + +++ +R+W
Sbjct: 110 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 150
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 6 FTAANEDFNLYSYDIR--QLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLA 63
F + D +D+R Q H+ S V SV Y P+G F +G D + RLY
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Query: 64 HQGHSRDIYHTKRMQHVTHTV-WSLDNKFVISASDEMNLRVW 104
IY + + +V +SL + + + ++ + VW
Sbjct: 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 37 VTSVDYSP--TGREFVAGGYDKSLRLYLAHQGHSRDIYHT 74
V +D +P TG FV+GG DK ++ G + T
Sbjct: 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET 238
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 37 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHS--RDIYHTKRMQHVTHTVWSLDNKFVIS 94
V+ V S G+ ++G +D +LRL+ G + R + HTK + V S DN+ ++S
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF---SSDNRQIVS 122
Query: 95 ASDEMNLRVWKAHASEK 111
S + +++W K
Sbjct: 123 GSRDKTIKLWNTLGVCK 139
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 37 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHS--RDIYHTKRMQHVTHTVWSLDNKFVIS 94
V+ V S G+ ++G +D +LRL+ G + R + HTK + V S DN+ ++S
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF---SSDNRQIVS 145
Query: 95 ASDEMNLRVWKAHASEK 111
S + +++W K
Sbjct: 146 GSRDKTIKLWNTLGVCK 162
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 22 QLNSP--LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH 79
+L SP L H D +T + + G V+G D +L+++ A G + +
Sbjct: 107 ELKSPKVLKGHDD--HVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKC-----LRTLVG 157
Query: 80 VTHTVWS--LDNKFVISASDEMNLRVWKAHASEKL 112
T VWS + + +IS S + L+VW A E +
Sbjct: 158 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECI 192
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 8 AANEDFNLYSYDIRQLNS--PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ 65
+ + D ++ +D+ N L H+ +TS + D V+G D +++++
Sbjct: 294 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-----NILVSGNADSTVKIWDIKT 348
Query: 66 GHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASE 110
G T + FVI++SD+ +++W E
Sbjct: 349 GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 393
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 49 FVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHA 108
++G D++L+++ A G + HT T L K V+S S + LRVW
Sbjct: 172 IISGSTDRTLKVWNAETG---ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 228
Query: 109 SEKL 112
+ L
Sbjct: 229 GQCL 232
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 37 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISAS 96
++ ++++ T + ++ D +LR++ G+S++ ++ Q + W D+K VIS S
Sbjct: 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY-GHSQSIVSASWVGDDK-VISCS 307
Query: 97 DEMNLRVW 104
+ ++R+W
Sbjct: 308 MDGSVRLW 315
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 35 SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVIS 94
S V S+ ++ G+ FV+ G D L + G S I+ +K V S+D+K++++
Sbjct: 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQSKESSSVLSCDISVDDKYIVT 323
Query: 95 ASDE 98
S +
Sbjct: 324 GSGD 327
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.8 bits (68), Expect = 0.45, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
T AV +S G+ + G DK+L+++ A G + + V +S D++F+
Sbjct: 621 TDAVYHACFSEDGQRIASCGADKTLQVFKAETGE-KLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 94 SASDEMNLRVWKAHASE 110
+ S + +++W + E
Sbjct: 680 TCSVDKKVKIWNSMTGE 696
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 49 FVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKA 106
G D L+L+ +Q R+ HT V H +S D+K + S S + L++W A
Sbjct: 722 LATGSSDCFLKLWDLNQKECRNTMFGHT---NSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Query: 107 HASEKLGYVNNKQ 119
++ + +N KQ
Sbjct: 779 TSANERKSINVKQ 791
Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 76 RMQH---VTHTVWSLDNKFVISASDEMNLRVW 104
R QH V H ++ D K +IS+SD+ ++VW
Sbjct: 1005 RFQHKKTVWHIQFTADEKTLISSSDDAEIQVW 1036
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 37 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISAS 96
V+SV P G V+ DK+++++ G+ + R + V + D + S S
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR-EWVRMVRPNQDGTLIASCS 253
Query: 97 DEMNLRVWKAHASE 110
++ +RVW E
Sbjct: 254 NDQTVRVWVVATKE 267
>pdb|2PFZ|A Chain A, Crystal Structure Of Dctp6, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
Length = 301
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 42 YSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWS----LDNKFVISASD 97
Y G F+A GYD S +LY A + ++ M + W N+ + SD
Sbjct: 76 YELDGLPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQGIFANRDIKQVSD 135
Query: 98 EMNLRVWKAHA 108
L+ W+A++
Sbjct: 136 MKGLK-WRAYS 145
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/120 (14%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYL 62
+++ ++ + +++ +D+R + + V + ++P GR +GG D + ++
Sbjct: 210 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 269
Query: 63 AHQGHSRDI------YHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVN 116
+ G + H ++ V W + + + ++R+W + L V+
Sbjct: 270 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 329
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/120 (14%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYL 62
+++ ++ + +++ +D+R + + V + ++P GR +GG D + ++
Sbjct: 199 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 258
Query: 63 AHQGHSRDI------YHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVN 116
+ G + H ++ V W + + + ++R+W + L V+
Sbjct: 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 318
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 32 DMTSAVTSVDYSPTGREFVA--GGYDKSLRLY-LAHQGHSRDIYHTKRMQHVTHTVWSLD 88
D S VTS+ +SP +E ++ G D +L ++ + G ++ + V ++ S D
Sbjct: 301 DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD 360
Query: 89 NKFVISASDEMNLRVWKAHASE 110
+ + +A+ + NL+ W+ + +
Sbjct: 361 GRILSTAASDENLKFWRVYDGD 382
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 46 GREFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRV 103
G V+G YD +L ++ Q I HT R + T++ + K ISAS + +R+
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDR---IYSTIYDHERKRCISASXDTTIRI 336
Query: 104 WKAHASE 110
W E
Sbjct: 337 WDLENGE 343
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 87 LDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR--QALDYSESLKQKYAHHPQIRRIAR 144
D+K+++SAS + ++VW E + +N +R L Y + L + IR
Sbjct: 264 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 323
Query: 145 HRQVPRHIYNAQAEH-RAIRSKQKRKESN 172
+ E R IR KR S
Sbjct: 324 ECGACLRVLEGHEELVRCIRFDNKRIVSG 352
>pdb|1Y56|A Chain A, Crystal Structure Of L-Proline Dehydrogenase From
P.Horikoshii
Length = 493
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 101 LRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHR 160
+ VW+ K+ +K + + E Y H P ++R+ + +V R I E++
Sbjct: 242 MNVWEVAPGRKVAVTGSKADEVIQELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYK 301
Query: 161 A---IRSKQKRKESNKRTHSA 178
I + +R + N T +
Sbjct: 302 VDALIFADGRRPDINPITQAG 322
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 50 VAGGYDKSLRLYLAHQG--HSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAH 107
++ +DK+LRL+ G + R + H + V S DN+ ++SA E +++W
Sbjct: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF---SPDNRQILSAGAEREIKLWNIL 148
Query: 108 ASEKL 112
K
Sbjct: 149 GECKF 153
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/141 (14%), Positives = 59/141 (41%), Gaps = 7/141 (4%)
Query: 3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYL 62
+++ ++ + +++ +D+R + + V + ++P GR +GG D + ++
Sbjct: 119 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 178
Query: 63 AHQGHSRDI------YHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVN 116
+ G + H ++ V W + + + ++R+W + L V+
Sbjct: 179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 238
Query: 117 -NKQRQALDYSESLKQKYAHH 136
+ Q ++ +S K+ + H
Sbjct: 239 AHSQVCSILWSPHYKELISGH 259
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ + + D L +D+ Q+ L + T + S Y + ++ D ++R++
Sbjct: 282 IVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340
Query: 65 QGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHA-SEKLGY 114
G ++ +T + + L +KF++SA+ + ++R W A+ S K Y
Sbjct: 341 NG---ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY 388
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 46 GREFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRV 103
G V+G YD +L ++ Q I HT R + T++ + K ISAS + +R+
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR---IYSTIYDHERKRCISASMDTTIRI 336
Query: 104 WKAHASEKL 112
W E +
Sbjct: 337 WDLENGELM 345
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
Length = 674
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 50 VAGGYDKSLRLYLAHQGHSRDIYHTKRMQ 78
+AGGYD YL + +S D++HT+ Q
Sbjct: 586 LAGGYDAQYYGYLWSEVYSMDMFHTRFKQ 614
>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
Neurolysin Specificity In Neurotensin Cleavage Site
Length = 674
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 50 VAGGYDKSLRLYLAHQGHSRDIYHTKRMQ 78
+AGGYD YL + +S D++HT+ Q
Sbjct: 586 LAGGYDAQYYGYLWSEVYSMDMFHTRFKQ 614
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.127 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,797,326
Number of Sequences: 62578
Number of extensions: 217231
Number of successful extensions: 712
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 136
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)