RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18074
(197 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 58.2 bits (139), Expect = 5e-11
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Query: 8 AANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGH 67
+ D + +D+R+ S + ++ + P G F G D + RL+
Sbjct: 201 SGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 68 SRDIYHTKRMQH-VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG 113
Y + +T +S + +++ D+ N VW A +++ G
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Score = 51.3 bits (121), Expect = 1e-08
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLA 63
T +++ H ++ +TSV +S +GR +AG D + ++ A
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 64 HQGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVW 104
+ + H R V+ + D V + S + L++W
Sbjct: 300 LKADRAGVLAGHDNR---VSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 34.7 bits (78), Expect = 0.005
Identities = 6/71 (8%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
+ + ++ + R V+ D L ++ ++ + + V ++ +V
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW-VMTCAYAPSGNYVA 113
Query: 94 SASDEMNLRVW 104
+ ++
Sbjct: 114 CGGLDNICSIY 124
Score = 27.0 bits (58), Expect = 1.8
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 65 QGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALD 124
+GH IY W D++ ++SAS + L +W ++ + K+ + + +
Sbjct: 52 RGHLAKIYAMH---------WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 125 YSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEH 159
+ + Y + I + N +
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 54.7 bits (130), Expect = 7e-10
Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ + D + +D+ L + V V + G+ ++ DK+LR++
Sbjct: 219 FLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277
Query: 65 QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWK 105
H VT + +V++ S + ++VW+
Sbjct: 278 NKRCMKTLNAHEHF---VTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 37.4 bits (85), Expect = 7e-04
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 37 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISAS 96
+ G ++G DK+++++ G V ++ KF++S +
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD-NWVRGVLFHSGGKFILSCA 266
Query: 97 DEMNLRVWKAHASEKL 112
D+ LRVW +
Sbjct: 267 DDKTLRVWDYKNKRCM 282
Score = 36.6 bits (83), Expect = 0.001
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLY--------LAHQGHSRDIYHTKRMQHVTHTVW 85
S VT V + P V+ D +++++ +GH+ +
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76
Score = 28.9 bits (63), Expect = 0.39
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
VT ++ ++SAS++ ++VW +
Sbjct: 20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFE 52
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 52.1 bits (123), Expect = 7e-09
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 39 SVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDE 98
S+ ++ G+ FV+ G D L + G S I+ +K V S+D+K++++ S +
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQSKESSSVLSCDISVDDKYIVTGSGD 327
Query: 99 MNLRVWK 105
V++
Sbjct: 328 KKATVYE 334
Score = 37.5 bits (85), Expect = 5e-04
Identities = 14/130 (10%), Positives = 31/130 (23%), Gaps = 5/130 (3%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL----DN 89
V +V S R V G ++++ ++ + + + S D
Sbjct: 51 GEVVCAVTISNPTR-HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 90 KFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVP 149
+I + L +W A Y+ ++
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 150 RHIYNAQAEH 159
H +
Sbjct: 170 LHNQTLVRQF 179
Score = 35.2 bits (79), Expect = 0.003
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 6 FTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 61
F + +D L ++ S +S+V S D S + V G DK +Y
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Score = 32.5 bits (72), Expect = 0.023
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 30 HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDN 89
D TS + S+ Y PTG G ++ + ++ ++ + ++
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL--SLKFAYCG 277
Query: 90 KFVISASDEMNLRVWKAHASEKL 112
K+ +S + L W+ +
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASI 300
Score = 29.0 bits (63), Expect = 0.41
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 2/84 (2%)
Query: 4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDM--TSAVTSVDYSPTGREFVAGGYDKSLRLY 61
V+T ++ SP++ + + + S P G + GG +L ++
Sbjct: 65 HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
Query: 62 LAHQGHSRDIYHTKRMQHVTHTVW 85
R + +
Sbjct: 125 DLAAPTPRIKAELTSSAPACYALA 148
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 51.8 bits (122), Expect = 1e-08
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 29 VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY----HTKRMQHVTHTV 84
H + ++ ++ + + + +Y ++ H + VT
Sbjct: 2 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ---VTGVD 58
Query: 85 WSLDNKFVISASDEMNLRVWKAH 107
W+ D+ +++ + N VW
Sbjct: 59 WAPDSNRIVTCGTDRNAYVWTLK 81
Score = 36.0 bits (81), Expect = 0.002
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVW 85
VT VD++P V G D++ ++ + R+ V
Sbjct: 51 NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 102
Score = 30.2 bits (66), Expect = 0.13
Identities = 4/39 (10%), Positives = 18/39 (46%)
Query: 72 YHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASE 110
YH+ ++ ++ W+ D + + + +++ ++
Sbjct: 2 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK 40
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 50.6 bits (119), Expect = 2e-08
Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 11/103 (10%)
Query: 21 RQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRM--- 77
+L+S +V SV ++ G+ V+G D+S++L+ +++ T
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 78 --------QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
V + ++++++S S + + W + L
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
Score = 45.9 bits (107), Expect = 8e-07
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 24 NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH--------QGHSRDIYHTK 75
+ + V SV + ++G D+ + + QGH +
Sbjct: 298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS-- 355
Query: 76 RMQHVTHTVWSLDNKFVISASDEMNLRVWK 105
+ + + + S + R+WK
Sbjct: 356 -VAVANGSSLGPEYNVFATGSGDCKARIWK 384
Score = 34.8 bits (78), Expect = 0.006
Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 18/151 (11%)
Query: 21 RQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH--------QGHSRDIY 72
R+++ L+ D TS V V +S G ++A G +K+ ++Y S
Sbjct: 49 REIDVELHKSLDHTSVVCCVKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANK 107
Query: 73 HTKRMQ---------HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQAL 123
+ + ++ +S D KF+ + +++ +R+W + + + ++
Sbjct: 108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 167
Query: 124 DYSESLKQKYAHHPQIRRIARHRQVPRHIYN 154
R R + +
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 198
Score = 34.0 bits (76), Expect = 0.008
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 42 YSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT------VWSLDNKFVISA 95
G+ AG D+++R++ + G + ++ H V++ D + V+S
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272
Query: 96 SDEMNLRVWKAHASEKLGY 114
S + ++++W +
Sbjct: 273 SLDRSVKLWNLQNANNKSD 291
Score = 31.7 bits (70), Expect = 0.048
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 6 FTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDY------SPTGREFVAGGYDKSLR 59
+ ++D + +D + N PL + + ++V SV P F G D R
Sbjct: 323 ILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 381
Query: 60 LY 61
++
Sbjct: 382 IW 383
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 43.7 bits (101), Expect = 5e-06
Identities = 8/78 (10%), Positives = 21/78 (26%), Gaps = 5/78 (6%)
Query: 29 VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLD 88
+ + + + L Y ++ + ++T S D
Sbjct: 271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN-----NLTDLRLSAD 325
Query: 89 NKFVISASDEMNLRVWKA 106
K V+ D+ + +
Sbjct: 326 RKTVMVRKDDGKIYTFPL 343
Score = 35.6 bits (80), Expect = 0.002
Identities = 7/66 (10%), Positives = 17/66 (25%), Gaps = 3/66 (4%)
Query: 39 SVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDE 98
+ D+SP + +A + + + R + + D K
Sbjct: 7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLR---IRYVRRGGDTKVAFIHGTR 63
Query: 99 MNLRVW 104
+
Sbjct: 64 EGDFLG 69
Score = 30.6 bits (67), Expect = 0.096
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLA 63
+ A E L YD++ ++ + +T + S + + D + +
Sbjct: 289 AYYQGAPEKGVLLKYDVKTRKV-----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343
Query: 64 HQG 66
+
Sbjct: 344 EKP 346
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 42.1 bits (97), Expect = 2e-05
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 27 LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY-LAHQGHSRDIYHTKRMQH-VTHTV 84
KD ++ + P+ + +D SL +Y Q + D+ + R +H +
Sbjct: 7 EQAPKD---YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 85 WSLDNKFVISASDEMNLRVWKAHAS 109
+ + I +
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIG 88
Score = 36.0 bits (81), Expect = 0.002
Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 30 HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDN 89
++ V S+++SP + G D + + + I + + + + +
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--KKIKNFAKFNEDSVVKIACSD 304
Query: 90 KFVISASDEMNLRVWKA 106
+ A+ + + A
Sbjct: 305 NILCLATSDDTFKTNAA 321
Score = 30.2 bits (66), Expect = 0.13
Identities = 9/76 (11%), Positives = 18/76 (23%), Gaps = 14/76 (18%)
Query: 80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI 139
++ ++ S + +L V+K K L Q + +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV--------------DLLQSLRYKHPL 59
Query: 140 RRIARHRQVPRHIYNA 155
IY
Sbjct: 60 LCCNFIDNTDLQIYVG 75
Score = 27.5 bits (59), Expect = 1.2
Identities = 9/71 (12%), Positives = 20/71 (28%)
Query: 15 LYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT 74
+Y +DI+ N L + ++ + G + L + G T
Sbjct: 37 VYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT 96
Query: 75 KRMQHVTHTVW 85
++
Sbjct: 97 NNEANLGICRI 107
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 39.2 bits (89), Expect = 2e-04
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
A+T++ S G+ + + + + G S ++ +T + +
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT-SKGDLF 70
Query: 94 SASDEMNLRVWKAHASE 110
+ S + +L+V A S
Sbjct: 71 TVSWDDHLKVVPAGGSG 87
Score = 35.0 bits (78), Expect = 0.004
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 42 YSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKR-MQHVTHTVWSLDNKFVISASDEMN 100
+SP G D S+ ++ ++ I ++V L+ ++SA + N
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN 291
Query: 101 LRVW 104
++ W
Sbjct: 292 IKFW 295
Score = 30.3 bits (66), Expect = 0.15
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 9/48 (18%)
Query: 65 QGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
GH++ +T S D K + SA E ++ W
Sbjct: 9 YGHNKA---------ITALSSSADGKTLFSADAEGHINSWDISTGISN 47
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 38.4 bits (87), Expect = 2e-04
Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 11 EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 61
D N++ Y +++ + V ++ + V+ G D ++ +
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW 284
Score = 34.5 bits (77), Expect = 0.005
Identities = 8/76 (10%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Query: 30 HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDN 89
+ + + G D ++ +Y + V + +W +
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS 270
Query: 90 KFVISASDEMNLRVWK 105
V S+ + ++ W
Sbjct: 271 TLV-SSGADACIKRWN 285
Score = 28.4 bits (61), Expect = 0.58
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 26 PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY---LAHQGHSRDIY 72
L +T++ +P ++G YD + + HQ HS I
Sbjct: 5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIV 50
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 35.9 bits (81), Expect = 0.002
Identities = 14/108 (12%), Positives = 26/108 (24%), Gaps = 8/108 (7%)
Query: 5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
+ + N D + +DI+ + + D +++L+
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288
Query: 65 QGHSRDIYHTKRMQHVTHTVWSL----DNKFVISASD----EMNLRVW 104
G T VW + S E L V
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
Score = 29.4 bits (64), Expect = 0.24
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 10/48 (20%)
Query: 65 QGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
+GH + T ++S SD+ L+VW A + L
Sbjct: 13 KGHDDHVI----------TCLQFCGNRIVSGSDDNTLKVWSAVTGKCL 50
Score = 28.2 bits (61), Expect = 0.69
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLD 88
V + G V+G D +L+++ A G + + T VWS
Sbjct: 16 DDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQ 64
Score = 27.5 bits (59), Expect = 1.1
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 5/138 (3%)
Query: 47 REFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKA 106
R V+G YD +++ + HT + D V+S S + ++RVW
Sbjct: 148 RRVVSGAYDFMVKV---WDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 204
Query: 107 HASEKLGYVNNKQRQ--ALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRS 164
+ + Q ++ +++ ++ +H++ +
Sbjct: 205 ETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 264
Query: 165 KQKRKESNKRTHSAPGTV 182
+ ++ T S GTV
Sbjct: 265 CLQFNKNFVITSSDDGTV 282
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 35.3 bits (79), Expect = 0.003
Identities = 7/64 (10%), Positives = 19/64 (29%)
Query: 41 DYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMN 100
+SP G + + DK+++++ + ++S S
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304
Query: 101 LRVW 104
+
Sbjct: 305 INFV 308
Score = 34.1 bits (76), Expect = 0.007
Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 14 NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH 73
++Y+ + L ++ + + T SP+G +G ++R++ Q
Sbjct: 39 SVYTVPVGSLT-DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT 97
Query: 74 TKRMQHVTHTVW 85
+
Sbjct: 98 IPVFSGPVKDIS 109
Score = 24.9 bits (52), Expect = 7.9
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 64 HQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVW 104
+ + V WS D + SAS + +++W
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 265
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 35.1 bits (79), Expect = 0.004
Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 3/111 (2%)
Query: 3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYL 62
A+ + S D++ + D+T + SP + G ++ + L
Sbjct: 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL 279
Query: 63 AHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG 113
+ + V + + +L V+ EK+
Sbjct: 280 KQRKLIKAANLDHTYYCVA---FDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 34.5 bits (77), Expect = 0.005
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 46 GREFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRV 103
++F G D ++R++ + +++ + V + N +IS S + L
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
Query: 104 WK 105
++
Sbjct: 323 YE 324
Score = 28.3 bits (61), Expect = 0.58
Identities = 8/80 (10%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 34 TSAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ-------HVTHTV 84
+S VT+V +SP + +G + ++ + ++
Sbjct: 63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122
Query: 85 WSLDNKFVISASDEMNLRVW 104
W + + + + +
Sbjct: 123 WDFEGRRLCVVGEGRDNFGV 142
Score = 27.2 bits (58), Expect = 1.3
Identities = 11/83 (13%), Positives = 23/83 (27%)
Query: 30 HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDN 89
V S V S + + + +Q + LD+
Sbjct: 204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 263
Query: 90 KFVISASDEMNLRVWKAHASEKL 112
+ + + +RVW S+ +
Sbjct: 264 QKFATVGADATIRVWDVTTSKCV 286
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 34.4 bits (77), Expect = 0.006
Identities = 13/112 (11%), Positives = 29/112 (25%), Gaps = 6/112 (5%)
Query: 1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
+ F + L +L + + TSVD S G G + ++++
Sbjct: 151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQI 209
Query: 61 YLAHQGHSRDIYH-----TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAH 107
+ + +S + A D + +
Sbjct: 210 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 261
Score = 34.4 bits (77), Expect = 0.006
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 18/114 (15%)
Query: 25 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY--------------LAHQGHSRD 70
+ N K + + SV S V+ D L+++ +H H
Sbjct: 5 ATANAGKAHDADIFSV--SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 71 IYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALD 124
++H +Q + + + V + S +L ++ ++ V ++ LD
Sbjct: 63 LHHVDVLQAIER--DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD 114
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 33.7 bits (75), Expect = 0.010
Identities = 5/75 (6%), Positives = 18/75 (24%), Gaps = 1/75 (1%)
Query: 30 HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDN 89
+ ++++ + G + +Y G K + +
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GK 335
Query: 90 KFVISASDEMNLRVW 104
V + + +
Sbjct: 336 TLVAAVEKDGQSFLE 350
Score = 31.8 bits (70), Expect = 0.042
Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 3/98 (3%)
Query: 15 LYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT 74
+Y ++ L+ H V ++ Y+ G + +
Sbjct: 37 VYDSINKKFLLQLSGHDG---GVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGH 93
Query: 75 KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
V + K++++ S + L VWK +
Sbjct: 94 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 131
Score = 29.1 bits (63), Expect = 0.33
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 65 QGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
+GH + T ++ +VI+ +D+ +RV+ + + L
Sbjct: 9 RGHMTSVI----------TCLQFEDNYVITGADDKMIRVYDSINKKFL 46
Score = 27.9 bits (60), Expect = 0.81
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL---DNK 90
++V + + G DK +R+Y + ++ VW+L
Sbjct: 12 MTSVITC-LQFEDNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHGG 65
Query: 91 FVISASDEMNLRVWKAH 107
++S S + +RVW
Sbjct: 66 ILVSGSTDRTVRVWDIK 82
Score = 26.0 bits (55), Expect = 3.8
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 1/55 (1%)
Query: 8 AANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYL 62
+ + Y++R + SV++ A D L +
Sbjct: 298 VSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAAVEKDGQSFLEI 351
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 31.4 bits (69), Expect = 0.061
Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 9/105 (8%)
Query: 6 FTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ 65
+ + D + +DI + + V+G YD ++++
Sbjct: 191 VVSGSSDNTIRLWDIECGAC---LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVA 247
Query: 66 GHSRDIYHTKRMQHV----THTVWSL--DNKFVISASDEMNLRVW 104
+ V+ L D ++S+S + + +W
Sbjct: 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
Score = 31.0 bits (68), Expect = 0.081
Identities = 9/73 (12%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
Query: 21 RQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH--------QGHSRDIY 72
R ++ + + V + ++ V+G D +++++ + GH+ +
Sbjct: 2 RHSLQRIHCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59
Query: 73 HTKRMQHVTHTVW 85
+ + V T
Sbjct: 60 CLQYDERVIITGS 72
Score = 28.3 bits (61), Expect = 0.61
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 56 KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
SL+ S+ +Y D++ ++S + +++W + E
Sbjct: 3 HSLQRIHCRSETSKGVY-----------CLQYDDQKIVSGLRDNTIKIWDKNTLECK 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.127 0.369
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 695,271
Number of extensions: 29646
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 66
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (24.0 bits)