BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18075
(999 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 171/339 (50%), Gaps = 20/339 (5%)
Query: 377 KLSFAGQGLKLD--NKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHF 434
+ S G+ LKLD ED K + + E + + L GNT+G AA+ +++ ++ +
Sbjct: 3 RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62
Query: 435 KRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSS 494
+ A + D+FTGR+K EIP+ALR L L + +L + LSDNAFGP E L D L
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTAQEPLIDFLSKH 121
Query: 495 CCFAXXXXXXXXXXXXITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKM 554
G K +++AL + + K + +P L+ I GRNRLEN K
Sbjct: 122 TPLEHLYLHNNGLGPQ-AGAK-IARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMKE 178
Query: 555 LAAVFKKLKTLERVEMPQNGIYHVGITA-LSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613
A F+ + L V+M QNGI GI L + + L+ L+L DNT T+ G+ L
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238
Query: 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKAM 671
AL P+L L L DCLL + GA+++ + +N L+ + L NEI LD V+ +
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE----LDAVRTL 294
Query: 672 KNKTKLKQ-----INVSENQFGEEG--VEEMEKLMKSFG 703
K K + ++ N+F EE V+E+ ++ + G
Sbjct: 295 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 171/339 (50%), Gaps = 20/339 (5%)
Query: 377 KLSFAGQGLKLD--NKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHF 434
+ S G+ LKLD ED K + + E + + L GNT+G AA+ +++ ++ +
Sbjct: 2 RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61
Query: 435 KRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSS 494
+ A + D+FTGR+K EIP+ALR L L + +L + LSDNAFGP E L D L
Sbjct: 62 EIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTAQEPLIDFLSKH 120
Query: 495 CCFAXXXXXXXXXXXXITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKM 554
G K +++AL + + K + +P L+ I GRNRLEN K
Sbjct: 121 TPLEHLYLHNNGLGPQ-AGAK-IARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMKE 177
Query: 555 LAAVFKKLKTLERVEMPQNGIYHVGITA-LSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613
A F+ + L V+M QNGI GI L + + L+ L+L DNT T+ G+ L
Sbjct: 178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237
Query: 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKAM 671
AL P+L L L DCLL + GA+++ + +N L+ + L NEI LD V+ +
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE----LDAVRTL 293
Query: 672 KNKTKLKQ-----INVSENQFGEEG--VEEMEKLMKSFG 703
K K + ++ N+F EE V+E+ ++ + G
Sbjct: 294 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 332
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 2/149 (1%)
Query: 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTIT 604
RL + LA+V + + L+ + + N I G L ++ L L L + +T
Sbjct: 149 RLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLT 208
Query: 605 YKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK-YLTDNTTLEDVNLTCNEISVQG 663
L ++ SL L+LG L AG + + L+ + L+ + L +I+ G
Sbjct: 209 PANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASG 268
Query: 664 GLDLVKAMKNKTKLKQINVSENQFGEEGV 692
DL + ++ K LK+++++ N+ G+EG
Sbjct: 269 CRDLCRVLQAKETLKELSLAGNKLGDEGA 297
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 2/148 (1%)
Query: 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTITY 605
L E K + + + +L + + N + G+ + + ++ L+L + ++T
Sbjct: 36 LTEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGLQSPTCKIQKLSLQNCSLTE 95
Query: 606 KGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGG 664
G L L LP+L L+L D L AG + + L D LE + L ++
Sbjct: 96 AGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASC 155
Query: 665 LDLVKAMKNKTKLKQINVSENQFGEEGV 692
L ++ LK++ VS N GE G
Sbjct: 156 EPLASVLRATRALKELTVSNNDIGEAGA 183
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 98/242 (40%), Gaps = 20/242 (8%)
Query: 464 QAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHD 523
+A L EL +S+N G G L L S C + C L +
Sbjct: 163 RATRALKELTVSNNDIGEAGARVLGQGLADSAC--------QLETLRLENCGLTPA---N 211
Query: 524 CYESSKKEGSPLALKVFIAGRNRLENEG-AKMLAAVFKKLKTLERVEMPQNGIYHVGITA 582
C + S +L+ G N L + G A++ + L+ + + + I G
Sbjct: 212 CKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRD 271
Query: 583 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL----SKLPSLAILNLGDCLLKSAGASS 638
L + + L+ L+L N + +GA L ++L +L SL + + C L +A
Sbjct: 272 LCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKS---CSLTAACCQH 328
Query: 639 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQFGEEGVEEMEK 697
++ LT N L ++ L+ N++ G +L +A+ T L+ + + + + G +
Sbjct: 329 VSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLAS 388
Query: 698 LM 699
L+
Sbjct: 389 LL 390
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 105/269 (39%), Gaps = 44/269 (16%)
Query: 461 GLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKA 520
G+ ++ + L EL L+DN G G++ L + L+ C T C+ L+
Sbjct: 103 GMLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQC-RLEKLQLEYCNLTATSCEPLASV 161
Query: 521 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKT-LERVEMPQNGIYHVG 579
L ++ KE + N L G ++L K LE +++ GI
Sbjct: 162 LR--VKADFKE--------LVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAAN 211
Query: 580 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS--LAILNLGDCLLKSAGAS 637
L D +L+ L+L+ N + G L L LPS L L L +C + + G
Sbjct: 212 CKDLCDVVASKASLQELDLSSNKLGNAGIAALCPGL-LLPSCKLRTLWLWECDITAEGCK 270
Query: 638 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM-------------------------- 671
+ + L +L++++L NE+ +G L +++
Sbjct: 271 DLCRVLRAKQSLKELSLASNELKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFC 330
Query: 672 ---KNKTKLKQINVSENQFGEEGVEEMEK 697
L ++ +S N G+EGV+E+ K
Sbjct: 331 SVLTKSRSLLELQMSSNPLGDEGVQELCK 359
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 400 INEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLG 459
+ + + L+ L + N LG + + ALS+ + R LW G L
Sbjct: 333 LTKSRSLLELQMSSNPLGDEGVQELCKALSQPDTVLRELW----LGDCDV-TNSGCSSLA 387
Query: 460 NGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCC 496
N L A L ELDLS+N G GV L + L+ C
Sbjct: 388 NVLL-ANRSLRELDLSNNCMGGPGVLQLLESLKQPSC 423
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 50/255 (19%), Positives = 92/255 (36%), Gaps = 42/255 (16%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCYESS 528
L EL+L N G +GV + L++ C GC +LS L
Sbjct: 58 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG-AGCGVLSSTLR------ 110
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
+ L+ N L + G ++L + LE++++ + L+
Sbjct: 111 ----TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLLKSAGASSIAKYLTDN 646
+ + L +++N I G L Q L P L L L C + S + +
Sbjct: 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226
Query: 647 TTLEDVNLTCNE-----------------------------ISVQGGLDLVKAMKNKTKL 677
+L ++ L N+ I+ +G DL + ++ K L
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286
Query: 678 KQINVSENQFGEEGV 692
K+++++ N+ G+EG
Sbjct: 287 KELSLAGNELGDEGA 301
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 32/176 (18%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
A + L+ + V + G+ +S A N L LNL N + G + Q L
Sbjct: 21 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80
Query: 616 SKLPSLAI--LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-------EISVQGGLD 666
+ PS I L+L +C L AG ++ L TL++++L+ N ++ +G LD
Sbjct: 81 -QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139
Query: 667 ----------------------LVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMK 700
L ++ K K++ VS N E GV + + +K
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 195
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 50/255 (19%), Positives = 92/255 (36%), Gaps = 42/255 (16%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCYESS 528
L EL+L N G +GV + L++ C GC +LS L
Sbjct: 57 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG-AGCGVLSSTLR------ 109
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
+ L+ N L + G ++L + LE++++ + L+
Sbjct: 110 ----TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 165
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLLKSAGASSIAKYLTDN 646
+ + L +++N I G L Q L P L L L C + S + +
Sbjct: 166 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 225
Query: 647 TTLEDVNLTCNE-----------------------------ISVQGGLDLVKAMKNKTKL 677
+L ++ L N+ I+ +G DL + ++ K L
Sbjct: 226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 285
Query: 678 KQINVSENQFGEEGV 692
K+++++ N+ G+EG
Sbjct: 286 KELSLAGNELGDEGA 300
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 32/176 (18%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
A + L+ + V + G+ +S A N L LNL N + G + Q L
Sbjct: 20 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 79
Query: 616 SKLPSLAI--LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-------EISVQGGLD 666
+ PS I L+L +C L AG ++ L TL++++L+ N ++ +G LD
Sbjct: 80 -QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 138
Query: 667 ----------------------LVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMK 700
L ++ K K++ VS N E GV + + +K
Sbjct: 139 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 194
>pdb|2IY0|C Chain C, Senp1 (Mutant) Sumo1 Rangap
Length = 156
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 781 VTDFLAAPSVSLFNSLGPNCAQLFLDEIN-SEPEDRYLESMLLAIMKXXXXXXXXXXXXX 839
V+ FLA PS LGP + L + + S+PE ++ A +K
Sbjct: 3 VSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPE-----KVVSAFLKVSSVFKDEATVRM 57
Query: 840 XXXXXFECTKVLYRELFNWAS-NSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTA 898
+ L ++ FN +S NS+ T LLVH+GL+K EDK K NL G + A
Sbjct: 58 AVQ---DAVDALMQKAFNSSSFNSN---TFLTRLLVHMGLLKSEDK-VKAIANLYGPLMA 110
Query: 899 VRLLSEAKLLPSLTESQLLA 918
+ + + P LLA
Sbjct: 111 LNHMVQQDYFPKALAPLLLA 130
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 200 ECTKVLYRELFNWAS-NSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTAVRLLSE 258
+ L ++ FN +S NS+ T LLVH+GL+K EDK K NL G + A+ + +
Sbjct: 61 DAVDALMQKAFNSSSFNSN---TFLTRLLVHMGLLKSEDK-VKAIANLYGPLMALNHMVQ 116
Query: 259 AKLLPSLTESQLLA 272
P LLA
Sbjct: 117 QDYFPKALAPLLLA 130
>pdb|2IO2|C Chain C, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|C Chain C, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 172
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 781 VTDFLAAPSVSLFNSLGPNCAQLFLDEIN-SEPEDRYLESMLLAIMKXXXXXXXXXXXXX 839
V+ FLA PS LGP + L + + S+PE ++ A +K
Sbjct: 19 VSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEK-----VVSAFLKVSSVFKDEATVRM 73
Query: 840 XXXXXFECTKVLYRELFNWAS-NSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTA 898
+ L ++ FN +S NS+ T LLVH+GL+K EDK K NL G + A
Sbjct: 74 AVQ---DAVDALMQKAFNSSSFNSN---TFLTRLLVHMGLLKSEDK-VKAIANLYGPLMA 126
Query: 899 VRLLSEAKLLPSLTESQLLACM 920
+ + + P LLA +
Sbjct: 127 LNHMVQQDYFPKALAPLLLAFV 148
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 200 ECTKVLYRELFNWAS-NSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTAVRLLSE 258
+ L ++ FN +S NS+ T LLVH+GL+K EDK K NL G + A+ + +
Sbjct: 77 DAVDALMQKAFNSSSFNSN---TFLTRLLVHMGLLKSEDK-VKAIANLYGPLMALNHMVQ 132
Query: 259 AKLLPSLTESQLLACM 274
P LLA +
Sbjct: 133 QDYFPKALAPLLLAFV 148
>pdb|2GRN|B Chain B, Crystal Structure Of Human Rangap1-Ubc9
pdb|2GRO|B Chain B, Crystal Structure Of Human Rangap1-Ubc9-N85q
pdb|2GRP|B Chain B, Crystal Structure Of Human Rangap1-Ubc9-Y87a
pdb|2GRQ|B Chain B, Crystal Structure Of Human Rangap1-Ubc9-D127a
pdb|2GRR|B Chain B, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 170
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 781 VTDFLAAPSVSLFNSLGPNCAQLFLDEIN-SEPEDRYLESMLLAIMKXXXXXXXXXXXXX 839
V+ FLA PS LGP + L + + S+PE ++ A +K
Sbjct: 17 VSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEK-----VVSAFLKVSSVFKDEATVRM 71
Query: 840 XXXXXFECTKVLYRELFNWAS-NSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTA 898
+ L ++ FN +S NS+ T LLVH+GL+K EDK K NL G + A
Sbjct: 72 AVQ---DAVDALMQKAFNSSSFNSN---TFLTRLLVHMGLLKSEDK-VKAIANLYGPLMA 124
Query: 899 VRLLSEAKLLPSLTESQLLA 918
+ + + P LLA
Sbjct: 125 LNHMVQQDYFPKALAPLLLA 144
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 200 ECTKVLYRELFNWAS-NSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTAVRLLSE 258
+ L ++ FN +S NS+ T LLVH+GL+K EDK K NL G + A+ + +
Sbjct: 75 DAVDALMQKAFNSSSFNSN---TFLTRLLVHMGLLKSEDK-VKAIANLYGPLMALNHMVQ 130
Query: 259 AKLLPSLTESQLLA 272
P LLA
Sbjct: 131 QDYFPKALAPLLLA 144
>pdb|3UIN|C Chain C, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
pdb|3UIO|C Chain C, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|C Chain C, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 171
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 781 VTDFLAAPSVSLFNSLGPNCAQLFLDEIN-SEPEDRYLESMLLAIMKXXXXXXXXXXXXX 839
V+ FLA PS LGP + L + + S+PE ++ A +K
Sbjct: 18 VSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEK-----VVSAFLKVSSVFKDEATVRM 72
Query: 840 XXXXXFECTKVLYRELFNWAS-NSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTA 898
+ L ++ FN +S NS+ T LLVH+GL+K EDK K NL G + A
Sbjct: 73 AVQ---DAVDALMQKAFNSSSFNSN---TFLTRLLVHMGLLKSEDK-VKAIANLYGPLMA 125
Query: 899 VRLLSEAKLLPSLTESQLLA 918
+ + + P LLA
Sbjct: 126 LNHMVQQDYFPKALAPLLLA 145
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 200 ECTKVLYRELFNWAS-NSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTAVRLLSE 258
+ L ++ FN +S NS+ T LLVH+GL+K EDK K NL G + A+ + +
Sbjct: 76 DAVDALMQKAFNSSSFNSN---TFLTRLLVHMGLLKSEDK-VKAIANLYGPLMALNHMVQ 131
Query: 259 AKLLPSLTESQLLA 272
P LLA
Sbjct: 132 QDYFPKALAPLLLA 145
>pdb|1Z5S|C Chain C, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
Length = 172
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 781 VTDFLAAPSVSLFNSLGPNCAQLFLDEIN-SEPEDRYLESMLLAIMKXXXXXXXXXXXXX 839
V+ FLA PS LGP + L + + S+PE ++ A +K
Sbjct: 19 VSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEK-----VVSAFLKVSSVFKDEATVRM 73
Query: 840 XXXXXFECTKVLYRELFNWAS-NSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTA 898
+ L ++ FN +S NS+ T LLVH+GL+K EDK K NL G + A
Sbjct: 74 AVQ---DAVDALMQKAFNSSSFNSN---TFLTRLLVHMGLLKSEDK-VKAIANLYGPLMA 126
Query: 899 VRLLSEAKLLPSLTESQLLA 918
+ + + P LLA
Sbjct: 127 LNHMVQQDYFPKALAPLLLA 146
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 200 ECTKVLYRELFNWAS-NSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTAVRLLSE 258
+ L ++ FN +S NS+ T LLVH+GL+K EDK K NL G + A+ + +
Sbjct: 77 DAVDALMQKAFNSSSFNSN---TFLTRLLVHMGLLKSEDK-VKAIANLYGPLMALNHMVQ 132
Query: 259 AKLLPSLTESQLLA 272
P LLA
Sbjct: 133 QDYFPKALAPLLLA 146
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 23/158 (14%)
Query: 532 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA--LSDAFEE 589
GS LK N L+ G K+ + KL +LE +++ N I + LSD E
Sbjct: 120 GSCSGLKFLNVSSNTLDFPG-KVSGGL--KLNSLEVLDLSANSISGANVVGWVLSDGCGE 176
Query: 590 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 649
L+HL ++ N I+ G + +S+ +L L++ S S+ +L D + L
Sbjct: 177 ---LKHLAISGNKIS--GDV----DVSRCVNLEFLDV-----SSNNFSTGIPFLGDCSAL 222
Query: 650 EDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
+ ++++ N++S D +A+ T+LK +N+S NQF
Sbjct: 223 QHLDISGNKLSG----DFSRAISTCTELKLLNISSNQF 256
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 23/158 (14%)
Query: 532 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA--LSDAFEE 589
GS LK N L+ G K+ + KL +LE +++ N I + LSD E
Sbjct: 123 GSCSGLKFLNVSSNTLDFPG-KVSGGL--KLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 590 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 649
L+HL ++ N I+ G + +S+ +L L++ S S+ +L D + L
Sbjct: 180 ---LKHLAISGNKIS--GDV----DVSRCVNLEFLDV-----SSNNFSTGIPFLGDCSAL 225
Query: 650 EDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
+ ++++ N++S D +A+ T+LK +N+S NQF
Sbjct: 226 QHLDISGNKLSG----DFSRAISTCTELKLLNISSNQF 259
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 331 PIDNPLGPAVIELNHKGRMTDKPN--DDVSDILKKLES 366
PID+ LG +E+N R+ D P +++ DI+KKLES
Sbjct: 202 PIDHALGLLYVEVNR--RLEDNPELENEIRDIMKKLES 237
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 21/142 (14%)
Query: 548 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKG 607
ENE K+ +VF L + VE+ N + GI + AF+ K L ++ + D IT
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE--NGAFQGMKKLSYIRIADTNIT--- 184
Query: 608 AIPLGQALSKLPSLAILNL-GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS-VQGGL 665
IP G PSL L+L G+ + K AS L L + L+ N IS V G
Sbjct: 185 TIPQGLP----PSLTELHLDGNKITKVDAAS-----LKGLNNLAKLGLSFNSISAVDNG- 234
Query: 666 DLVKAMKNKTKLKQINVSENQF 687
++ N L++++++ N+
Sbjct: 235 ----SLANTPHLRELHLNNNKL 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 21/142 (14%)
Query: 548 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKG 607
ENE K+ +VF L + VE+ N + GI + AF+ K L ++ + D IT
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE--NGAFQGMKKLSYIRIADTNIT--- 184
Query: 608 AIPLGQALSKLPSLAILNL-GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS-VQGGL 665
IP G PSL L+L G+ + K AS L L + L+ N IS V G
Sbjct: 185 TIPQGLP----PSLTELHLDGNKITKVDAAS-----LKGLNNLAKLGLSFNSISAVDNG- 234
Query: 666 DLVKAMKNKTKLKQINVSENQF 687
++ N L++++++ N+
Sbjct: 235 ----SLANTPHLRELHLNNNKL 252
>pdb|3S2S|A Chain A, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|B Chain B, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|C Chain C, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|D Chain D, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
Length = 217
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 402 EVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKD 441
E K+ N++G T G + A+AD KHE+ KR W D
Sbjct: 98 ETKLFPPHNIKG-TSGRDLYGALADFYQKHENDKRVFWMD 136
>pdb|2K2S|A Chain A, Structure Of The Mic1-GldMIC6-Egf Complex From Toxoplasma
Gondii
Length = 136
Score = 29.6 bits (65), Expect = 9.2, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 324 NSMVSVIPIDNPLGPAV--IELNHKGRM 349
NS V+ ++ P GPAV I L HKGR+
Sbjct: 54 NSAFDVVEVEEPAGPAVLTIGLGHKGRL 81
>pdb|2BVB|A Chain A, The C-Terminal Domain From Micronemal Protein 1 (Mic1)
From Toxoplasma Gondii
Length = 137
Score = 29.6 bits (65), Expect = 9.2, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 324 NSMVSVIPIDNPLGPAV--IELNHKGRM 349
NS V+ ++ P GPAV I L HKGR+
Sbjct: 54 NSAFDVVEVEEPAGPAVLTIGLGHKGRL 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,788,465
Number of Sequences: 62578
Number of extensions: 742864
Number of successful extensions: 1916
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1845
Number of HSP's gapped (non-prelim): 69
length of query: 999
length of database: 14,973,337
effective HSP length: 108
effective length of query: 891
effective length of database: 8,214,913
effective search space: 7319487483
effective search space used: 7319487483
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)