Query psy18075
Match_columns 999
No_of_seqs 601 out of 4164
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 22:01:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ca6_A RAN GTPase-activating p 100.0 3.7E-38 1.3E-42 358.9 21.1 322 378-703 4-333 (386)
2 2grr_B RAN GTPase-activating p 100.0 1E-37 3.4E-42 307.4 9.8 154 775-938 11-164 (170)
3 2ca6_A RAN GTPase-activating p 100.0 2.4E-32 8.2E-37 310.9 18.5 291 408-717 8-317 (386)
4 1z7x_W Ribonuclease inhibitor; 100.0 5.5E-30 1.9E-34 296.5 23.1 350 344-715 55-410 (461)
5 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-28 3.8E-33 285.6 22.8 322 374-715 57-382 (461)
6 3goz_A Leucine-rich repeat-con 99.9 4.6E-27 1.6E-31 265.8 21.2 281 374-701 23-310 (362)
7 3goz_A Leucine-rich repeat-con 99.9 5.4E-27 1.8E-31 265.2 20.5 288 378-716 3-297 (362)
8 2grr_B RAN GTPase-activating p 99.9 2.8E-23 9.4E-28 204.9 9.4 135 71-272 10-144 (170)
9 3un9_A NLR family member X1; l 99.9 7.5E-22 2.6E-26 225.1 13.5 214 467-694 72-289 (372)
10 3un9_A NLR family member X1; l 99.9 1.9E-21 6.5E-26 221.8 15.8 207 374-632 73-283 (372)
11 3v47_A TOLL-like receptor 5B a 99.8 1.7E-19 5.8E-24 208.4 7.6 166 534-719 211-411 (455)
12 4fmz_A Internalin; leucine ric 99.8 1.4E-17 4.7E-22 185.7 21.8 281 344-715 65-345 (347)
13 3v47_A TOLL-like receptor 5B a 99.7 1.8E-18 6.1E-23 199.9 8.8 316 345-716 30-384 (455)
14 3ogk_B Coronatine-insensitive 99.7 1.7E-17 5.7E-22 198.0 17.3 299 374-718 193-528 (592)
15 1io0_A Tropomodulin; LRR prote 99.7 2.5E-18 8.5E-23 176.9 6.0 150 552-703 25-177 (185)
16 3rgz_A Protein brassinosteroid 99.7 9.7E-19 3.3E-23 216.8 3.0 38 374-418 319-357 (768)
17 3rgz_A Protein brassinosteroid 99.7 2.7E-18 9.3E-23 212.9 6.2 210 466-715 441-716 (768)
18 4fmz_A Internalin; leucine ric 99.7 5.1E-16 1.7E-20 173.0 23.9 258 374-717 67-325 (347)
19 3o6n_A APL1; leucine-rich repe 99.7 1.5E-17 5.1E-22 189.1 10.7 210 466-716 140-352 (390)
20 3ogk_B Coronatine-insensitive 99.7 4.6E-17 1.6E-21 194.1 15.3 309 344-712 191-547 (592)
21 2p1m_B Transport inhibitor res 99.7 1.8E-16 6.3E-21 188.9 19.9 286 374-715 212-518 (594)
22 1io0_A Tropomodulin; LRR prote 99.7 8.7E-18 3E-22 172.9 6.2 138 536-675 37-177 (185)
23 1ogq_A PGIP-2, polygalacturona 99.7 6E-19 2.1E-23 195.6 -3.0 250 374-714 51-302 (313)
24 1xku_A Decorin; proteoglycan, 99.7 1.9E-17 6.4E-22 183.9 8.8 275 374-713 53-329 (330)
25 3t6q_A CD180 antigen; protein- 99.7 4.3E-18 1.5E-22 204.0 3.8 283 374-719 279-563 (606)
26 2z80_A TOLL-like receptor 2, v 99.7 1.4E-17 4.7E-22 187.0 7.6 259 374-716 53-314 (353)
27 2id5_A Lingo-1, leucine rich r 99.7 1.4E-17 4.7E-22 194.2 7.7 276 374-716 33-333 (477)
28 2id5_A Lingo-1, leucine rich r 99.7 4.7E-18 1.6E-22 198.1 3.7 185 466-690 151-335 (477)
29 3oja_B Anopheles plasmodium-re 99.7 2.6E-17 9E-22 198.2 10.2 210 466-716 146-358 (597)
30 1xku_A Decorin; proteoglycan, 99.7 1.1E-16 3.8E-21 177.7 14.1 247 373-717 31-277 (330)
31 4glp_A Monocyte differentiatio 99.7 2.3E-17 8E-22 182.1 7.6 242 374-691 65-310 (310)
32 2ast_B S-phase kinase-associat 99.7 3.5E-16 1.2E-20 173.3 17.1 194 466-696 92-292 (336)
33 2p1m_B Transport inhibitor res 99.7 6.4E-16 2.2E-20 184.2 20.5 303 374-715 106-493 (594)
34 2ast_B S-phase kinase-associat 99.7 3.6E-16 1.2E-20 173.3 16.7 113 537-664 170-288 (336)
35 1o6v_A Internalin A; bacterial 99.7 5.9E-16 2E-20 180.5 18.7 190 465-714 175-364 (466)
36 3o6n_A APL1; leucine-rich repe 99.7 4.6E-17 1.6E-21 185.0 8.5 272 374-716 46-331 (390)
37 3o53_A Protein LRIM1, AGAP0063 99.7 9.1E-17 3.1E-21 178.1 10.1 194 465-712 78-271 (317)
38 4eco_A Uncharacterized protein 99.7 2E-17 6.8E-22 201.0 5.2 287 374-715 250-578 (636)
39 4ecn_A Leucine-rich repeat pro 99.7 5.7E-17 1.9E-21 203.2 8.7 322 337-715 440-818 (876)
40 2z7x_B TOLL-like receptor 1, v 99.7 2E-16 7E-21 186.1 12.9 332 336-719 60-484 (520)
41 3vq2_A TLR4, TOLL-like recepto 99.7 2.3E-17 7.7E-22 197.8 4.4 167 531-715 346-533 (606)
42 3vq2_A TLR4, TOLL-like recepto 99.7 3.7E-17 1.3E-21 195.9 6.2 200 495-719 348-561 (606)
43 2ft3_A Biglycan; proteoglycan, 99.7 4E-17 1.4E-21 181.6 5.5 275 374-714 55-331 (332)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.5E-16 5.1E-21 189.8 10.7 162 532-719 350-513 (562)
45 3t6q_A CD180 antigen; protein- 99.6 8.5E-17 2.9E-21 192.8 8.2 133 564-714 255-387 (606)
46 3oja_A Leucine-rich immune mol 99.6 7.3E-17 2.5E-21 190.1 7.4 193 465-711 78-270 (487)
47 3oja_B Anopheles plasmodium-re 99.6 1.3E-16 4.5E-21 192.1 8.5 273 374-717 52-338 (597)
48 2z66_A Variable lymphocyte rec 99.6 2E-16 6.8E-21 173.6 9.0 199 466-703 77-277 (306)
49 1o6v_A Internalin A; bacterial 99.6 6.5E-15 2.2E-19 171.7 21.7 279 344-717 67-345 (466)
50 4eco_A Uncharacterized protein 99.6 4.5E-17 1.5E-21 197.9 3.6 318 337-716 265-600 (636)
51 3o53_A Protein LRIM1, AGAP0063 99.6 6E-17 2.1E-21 179.5 4.3 225 396-716 26-250 (317)
52 2z66_A Variable lymphocyte rec 99.6 1.3E-16 4.4E-21 175.1 6.8 253 374-718 8-263 (306)
53 2z63_A TOLL-like receptor 4, v 99.6 7.1E-17 2.4E-21 191.4 5.1 166 532-715 344-530 (570)
54 1ozn_A Reticulon 4 receptor; N 99.6 4.1E-16 1.4E-20 169.5 10.5 207 467-717 32-239 (285)
55 2ft3_A Biglycan; proteoglycan, 99.6 4.3E-17 1.5E-21 181.3 2.8 271 374-715 34-306 (332)
56 4ecn_A Leucine-rich repeat pro 99.6 1.9E-16 6.6E-21 198.4 8.9 208 469-715 621-839 (876)
57 4fcg_A Uncharacterized protein 99.6 8.7E-17 3E-21 179.6 5.1 131 535-687 183-313 (328)
58 2z81_A CD282 antigen, TOLL-lik 99.6 1.1E-15 3.9E-20 180.6 14.9 290 374-718 197-512 (549)
59 1ogq_A PGIP-2, polygalacturona 99.6 3.4E-17 1.2E-21 181.5 1.4 204 466-715 75-280 (313)
60 1pgv_A TMD-1, tropomodulin TMD 99.6 1.8E-16 6.2E-21 164.8 6.7 123 537-659 43-169 (197)
61 2z7x_B TOLL-like receptor 1, v 99.6 6.1E-16 2.1E-20 182.1 11.7 146 558-715 215-386 (520)
62 2z80_A TOLL-like receptor 2, v 99.6 4.4E-16 1.5E-20 174.7 9.8 216 465-716 74-290 (353)
63 1wwl_A Monocyte differentiatio 99.6 1.5E-16 5.3E-21 175.8 5.2 190 465-690 119-311 (312)
64 1ozn_A Reticulon 4 receptor; N 99.6 6.3E-16 2.2E-20 168.0 9.7 237 376-701 14-252 (285)
65 1ziw_A TOLL-like receptor 3; i 99.6 9.1E-16 3.1E-20 186.6 12.1 61 536-604 223-285 (680)
66 3zyj_A Leucine-rich repeat-con 99.6 3.2E-16 1.1E-20 181.3 7.6 207 466-718 87-294 (440)
67 3zyj_A Leucine-rich repeat-con 99.6 5.9E-16 2E-20 179.1 9.6 240 374-701 65-306 (440)
68 4fcg_A Uncharacterized protein 99.6 7.1E-17 2.4E-21 180.3 1.7 136 559-716 179-314 (328)
69 1ziw_A TOLL-like receptor 3; i 99.6 9.9E-16 3.4E-20 186.3 11.7 113 535-659 248-365 (680)
70 3zyi_A Leucine-rich repeat-con 99.6 3.5E-16 1.2E-20 181.7 7.2 207 466-718 98-305 (452)
71 1pgv_A TMD-1, tropomodulin TMD 99.6 1E-15 3.6E-20 159.0 9.6 151 553-705 31-185 (197)
72 3zyi_A Leucine-rich repeat-con 99.6 7.2E-16 2.4E-20 179.1 9.2 229 374-690 76-305 (452)
73 4glp_A Monocyte differentiatio 99.6 2.6E-16 8.9E-21 173.7 5.1 242 403-717 63-308 (310)
74 2z81_A CD282 antigen, TOLL-lik 99.6 9.9E-16 3.4E-20 181.2 9.9 169 534-715 222-422 (549)
75 3oja_A Leucine-rich immune mol 99.6 3.2E-16 1.1E-20 184.6 5.4 193 466-716 57-250 (487)
76 3j0a_A TOLL-like receptor 5; m 99.6 8.1E-17 2.8E-21 201.7 -1.5 291 374-715 49-393 (844)
77 1wwl_A Monocyte differentiatio 99.6 1.7E-16 5.6E-21 175.6 0.5 215 465-717 93-310 (312)
78 1h6u_A Internalin H; cell adhe 99.6 2.7E-14 9.2E-19 157.9 16.2 170 466-689 62-231 (308)
79 1p9a_G Platelet glycoprotein I 99.6 1.4E-14 4.9E-19 159.0 13.2 196 467-706 31-227 (290)
80 3j0a_A TOLL-like receptor 5; m 99.6 1.7E-15 5.7E-20 189.8 6.4 287 374-716 25-375 (844)
81 2z62_A TOLL-like receptor 4, v 99.6 1.9E-15 6.4E-20 163.5 5.7 198 466-700 51-251 (276)
82 1h6u_A Internalin H; cell adhe 99.5 3.8E-14 1.3E-18 156.7 16.1 191 467-717 41-231 (308)
83 2z62_A TOLL-like receptor 4, v 99.5 5.4E-15 1.9E-19 159.9 8.0 212 467-719 28-240 (276)
84 1p9a_G Platelet glycoprotein I 99.5 1.1E-14 3.9E-19 159.8 9.9 204 465-719 8-211 (290)
85 3bz5_A Internalin-J, INLJ; leu 99.5 7.6E-14 2.6E-18 163.1 16.4 36 374-418 43-78 (457)
86 3bz5_A Internalin-J, INLJ; leu 99.5 7.8E-14 2.7E-18 163.0 14.1 226 400-713 38-264 (457)
87 2o6q_A Variable lymphocyte rec 99.5 5.2E-14 1.8E-18 152.2 10.5 194 467-700 37-232 (270)
88 2o6q_A Variable lymphocyte rec 99.5 3.2E-14 1.1E-18 153.8 8.4 206 467-719 16-221 (270)
89 2z63_A TOLL-like receptor 4, v 99.5 4.2E-14 1.4E-18 167.6 10.0 108 585-713 276-383 (570)
90 4g8a_A TOLL-like receptor 4; l 99.5 1.2E-14 4.2E-19 173.4 4.9 98 611-720 486-584 (635)
91 3g06_A SSPH2 (leucine-rich rep 99.5 3.5E-13 1.2E-17 163.4 17.5 119 535-690 181-299 (622)
92 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.7E-13 5.7E-18 163.4 12.5 266 374-690 222-512 (562)
93 1h6t_A Internalin B; cell adhe 99.4 5.1E-13 1.7E-17 146.6 13.2 171 467-691 46-216 (291)
94 3m19_A Variable lymphocyte rec 99.4 2.9E-13 9.8E-18 144.7 10.2 193 467-702 14-208 (251)
95 2ra8_A Uncharacterized protein 99.4 3.7E-13 1.3E-17 152.9 11.2 219 468-714 108-341 (362)
96 3rfs_A Internalin B, repeat mo 99.4 3.6E-13 1.2E-17 145.9 10.6 180 466-689 40-219 (272)
97 3rfs_A Internalin B, repeat mo 99.4 6.9E-13 2.4E-17 143.6 11.1 179 497-717 41-219 (272)
98 1h6t_A Internalin B; cell adhe 99.4 1.9E-12 6.4E-17 142.1 13.4 188 469-716 26-213 (291)
99 3g06_A SSPH2 (leucine-rich rep 99.4 4.2E-12 1.4E-16 153.9 16.6 236 374-716 62-297 (622)
100 4ezg_A Putative uncharacterize 99.4 9.4E-13 3.2E-17 135.6 8.9 110 560-689 85-195 (197)
101 3m19_A Variable lymphocyte rec 99.4 1.5E-12 5E-17 139.2 10.5 181 497-718 14-194 (251)
102 1m9s_A Internalin B; cell inva 99.3 1.7E-12 6E-17 156.9 11.6 171 466-690 42-212 (605)
103 1xeu_A Internalin C; cellular 99.3 1.7E-12 5.8E-17 140.4 9.1 168 468-690 20-187 (263)
104 2xwt_C Thyrotropin receptor; s 99.3 3.4E-13 1.2E-17 142.8 3.4 196 467-713 31-236 (239)
105 1jl5_A Outer protein YOPM; leu 99.3 5.2E-13 1.8E-17 155.9 4.4 249 374-716 12-270 (454)
106 2xwt_C Thyrotropin receptor; s 99.3 9.2E-13 3.1E-17 139.5 5.8 175 466-686 54-237 (239)
107 1m9s_A Internalin B; cell inva 99.3 6.2E-12 2.1E-16 152.0 13.5 189 468-716 22-210 (605)
108 2ra8_A Uncharacterized protein 99.3 1.2E-12 4.3E-17 148.5 6.9 91 590-686 251-341 (362)
109 4ezg_A Putative uncharacterize 99.3 3.3E-12 1.1E-16 131.6 9.4 148 536-715 45-193 (197)
110 3cvr_A Invasion plasmid antige 99.3 7.9E-12 2.7E-16 150.0 12.2 172 467-697 80-252 (571)
111 1xeu_A Internalin C; cellular 99.3 3.6E-12 1.2E-16 137.8 8.3 168 497-717 19-186 (263)
112 1jl5_A Outer protein YOPM; leu 99.3 5.3E-12 1.8E-16 147.3 9.0 133 535-716 237-370 (454)
113 4g8a_A TOLL-like receptor 4; l 99.2 1.6E-11 5.3E-16 146.6 10.4 204 467-710 52-256 (635)
114 2ell_A Acidic leucine-rich nuc 99.2 1.8E-11 6.3E-16 122.3 6.9 139 562-717 23-161 (168)
115 3cvr_A Invasion plasmid antige 99.2 1E-11 3.4E-16 149.1 5.4 185 467-717 59-244 (571)
116 3e6j_A Variable lymphocyte rec 99.2 6.8E-11 2.3E-15 125.0 10.0 169 495-702 18-188 (229)
117 2o6s_A Variable lymphocyte rec 99.1 2E-11 7E-16 126.3 5.3 128 535-689 52-179 (208)
118 1dce_A Protein (RAB geranylger 99.1 1E-12 3.6E-17 157.6 -5.7 104 537-660 443-546 (567)
119 2xot_A Amphoterin-induced prot 99.1 2.6E-11 8.9E-16 136.8 5.8 183 469-690 20-204 (361)
120 2v70_A SLIT-2, SLIT homolog 2 99.1 8.9E-11 3.1E-15 123.4 9.4 167 498-700 12-179 (220)
121 1dce_A Protein (RAB geranylger 99.1 7.2E-12 2.5E-16 150.4 0.1 208 465-710 347-567 (567)
122 2ell_A Acidic leucine-rich nuc 99.1 6.6E-11 2.3E-15 118.2 6.8 139 534-689 23-161 (168)
123 2je0_A Acidic leucine-rich nuc 99.1 1.6E-10 5.4E-15 113.1 8.2 134 562-712 16-149 (149)
124 2v9t_B SLIT homolog 2 protein 99.1 2E-10 6.8E-15 120.7 9.4 165 499-701 13-179 (220)
125 3e6j_A Variable lymphocyte rec 99.1 1.5E-10 5E-15 122.4 8.1 179 468-687 20-200 (229)
126 2xot_A Amphoterin-induced prot 99.1 1.4E-10 4.8E-15 130.8 8.3 183 498-718 19-204 (361)
127 2v70_A SLIT-2, SLIT homolog 2 99.1 1.3E-10 4.6E-15 122.1 7.1 157 469-663 13-169 (220)
128 2v9t_B SLIT homolog 2 protein 99.0 1E-10 3.5E-15 122.9 5.6 154 537-717 13-166 (220)
129 2je0_A Acidic leucine-rich nuc 99.0 1.2E-10 4.1E-15 114.0 5.7 133 534-683 16-148 (149)
130 2o6s_A Variable lymphocyte rec 99.0 6.1E-10 2.1E-14 115.1 8.8 136 534-689 27-162 (208)
131 4b8c_D Glucose-repressible alc 98.9 4.3E-10 1.5E-14 138.8 5.6 154 467-662 173-331 (727)
132 1ds9_A Outer arm dynein; leuci 98.9 4.4E-11 1.5E-15 123.2 -3.1 135 555-709 40-180 (198)
133 1a9n_A U2A', U2A'; complex (nu 98.9 5.2E-10 1.8E-14 113.0 4.8 134 534-688 18-153 (176)
134 1a9n_A U2A', U2A'; complex (nu 98.9 2.4E-09 8.3E-14 108.0 8.8 136 560-715 16-152 (176)
135 1ds9_A Outer arm dynein; leuci 98.9 4.5E-11 1.5E-15 123.1 -4.8 113 561-689 68-186 (198)
136 1w8a_A SLIT protein; signaling 98.8 1.7E-09 5.8E-14 111.0 4.9 110 564-688 30-139 (192)
137 4b8c_D Glucose-repressible alc 98.8 1.9E-09 6.4E-14 133.1 5.3 154 497-690 173-331 (727)
138 2wfh_A SLIT homolog 2 protein 98.8 4.5E-09 1.5E-13 108.3 6.4 140 537-700 12-152 (193)
139 1w8a_A SLIT protein; signaling 98.7 7.9E-09 2.7E-13 106.1 6.7 134 498-663 9-142 (192)
140 2o6r_A Variable lymphocyte rec 98.7 2.3E-08 7.9E-13 100.7 9.4 143 537-702 9-153 (177)
141 4ay9_X Follicle-stimulating ho 98.7 4.2E-10 1.4E-14 126.3 -3.9 220 374-685 31-256 (350)
142 2wfh_A SLIT homolog 2 protein 98.7 2.2E-08 7.6E-13 103.0 9.4 130 499-662 12-141 (193)
143 3sb4_A Hypothetical leucine ri 98.7 4.1E-08 1.4E-12 109.0 9.6 264 374-710 26-328 (329)
144 2o6r_A Variable lymphocyte rec 98.6 7.4E-08 2.5E-12 96.9 9.5 132 498-662 8-139 (177)
145 4ay9_X Follicle-stimulating ho 98.6 4.3E-09 1.5E-13 118.0 -0.7 210 467-712 30-255 (350)
146 3g39_A Variable lymphocyte rec 98.5 1E-07 3.5E-12 96.0 8.0 124 564-706 10-135 (170)
147 3sb4_A Hypothetical leucine ri 98.5 4.6E-08 1.6E-12 108.5 5.1 85 617-715 224-309 (329)
148 3e4g_A ATP synthase subunit S, 98.5 7.5E-08 2.6E-12 98.3 5.8 92 536-635 62-156 (176)
149 3e4g_A ATP synthase subunit S, 98.5 9.5E-08 3.3E-12 97.5 5.8 92 468-579 62-156 (176)
150 3g39_A Variable lymphocyte rec 98.4 2.2E-07 7.4E-12 93.6 6.4 124 536-678 10-135 (170)
151 2r9u_A Variable lymphocyte rec 98.4 4.1E-07 1.4E-11 92.1 8.3 101 591-703 33-135 (174)
152 2r9u_A Variable lymphocyte rec 98.3 7.3E-07 2.5E-11 90.2 6.7 118 537-674 14-134 (174)
153 4fdw_A Leucine rich hypothetic 98.0 3.8E-06 1.3E-10 96.4 5.8 15 496-510 179-193 (401)
154 2ifg_A High affinity nerve gro 98.0 6E-06 2E-10 91.8 6.7 66 587-660 27-93 (347)
155 4fdw_A Leucine rich hypothetic 98.0 4.1E-06 1.4E-10 96.2 5.4 213 451-713 120-333 (401)
156 2ifg_A High affinity nerve gro 97.9 6.4E-06 2.2E-10 91.5 4.7 90 559-661 27-117 (347)
157 3rw6_A Nuclear RNA export fact 97.8 5E-05 1.7E-09 82.5 10.5 67 588-660 167-233 (267)
158 3rw6_A Nuclear RNA export fact 97.6 0.00012 4E-09 79.6 8.5 106 540-653 148-257 (267)
159 4gt6_A Cell surface protein; l 96.4 0.0061 2.1E-07 68.9 9.2 108 586-713 260-367 (394)
160 4fs7_A Uncharacterized protein 95.4 0.0047 1.6E-07 69.9 1.9 47 454-507 149-195 (394)
161 4fs7_A Uncharacterized protein 93.1 0.088 3E-06 59.4 5.9 59 533-601 160-218 (394)
162 4gt6_A Cell surface protein; l 91.9 0.28 9.6E-06 55.2 8.1 128 558-713 260-388 (394)
163 4h09_A Hypothetical leucine ri 84.2 0.91 3.1E-05 50.4 5.5 107 586-712 235-342 (379)
164 4h09_A Hypothetical leucine ri 77.8 0.83 2.8E-05 50.7 2.2 143 455-635 205-348 (379)
165 3rfe_A Platelet glycoprotein I 77.2 3.2 0.00011 39.4 5.8 14 674-687 54-67 (130)
166 3rfe_A Platelet glycoprotein I 71.2 2 7E-05 40.8 2.8 60 594-662 11-70 (130)
167 4aco_A Centromere DNA-binding 23.3 17 0.00059 44.3 0.0 19 701-719 670-688 (956)
No 1
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=3.7e-38 Score=358.89 Aligned_cols=322 Identities=36% Similarity=0.536 Sum_probs=283.1
Q ss_pred EEeccCCCcCC--ChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHH
Q psy18075 378 LSFAGQGLKLD--NKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDAL 455 (999)
Q Consensus 378 LsL~g~~L~~~--s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l 455 (999)
+++.+..++++ ++.++..++.++..+++|++|+|++|.|+..++..|+.++..+++|+.+...+...+++...+|.++
T Consensus 4 ~s~~~~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~ 83 (386)
T 2ca6_A 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83 (386)
T ss_dssp EECTTCCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHH
T ss_pred EEecCcccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHH
Confidence 45566666555 8899999999999999999999999999999999999999999999877777777788888899999
Q ss_pred HHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCC
Q psy18075 456 RYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPL 535 (999)
Q Consensus 456 ~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~ 535 (999)
..++.++. .+++|++|+|++|.|++.++..+...+.. |++|++|+|++|+|+..+...++..+..+.... ..+..+
T Consensus 84 ~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~-~~~~~~ 159 (386)
T 2ca6_A 84 RLLLQALL-KCPKLHTVRLSDNAFGPTAQEPLIDFLSK--HTPLEHLYLHNNGLGPQAGAKIARALQELAVNK-KAKNAP 159 (386)
T ss_dssp HHHHHHHT-TCTTCCEEECCSCCCCTTTHHHHHHHHHH--CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHH-HHHTCC
T ss_pred HHHHHHHh-hCCcccEEECCCCcCCHHHHHHHHHHHHh--CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhh-hcccCC
Confidence 98887665 57899999999999999999989888854 579999999999999888889998887651000 000113
Q ss_pred CccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhH-HhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD-AFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~-aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
+|++|+|++|++++.++..++..+..+++|++|+|++|+|++.|+..+.. .+..+++|+.|+|++|.+++.|+..++..
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999988888 99999999999999999999888899999
Q ss_pred ccCCCCCcEEEcCCCCCCccchHHHHHhccC--CCCCCEEEccCCCCCCcchhhHHHhh-ccCCCcCEEEccCCCCChhc
Q psy18075 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDLVKAM-KNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 615 L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~--~~~L~~LdLs~N~I~~~g~~~L~~~L-~~~~sL~~LdLs~N~Is~eg 691 (999)
+..+++|+.|+|++|.+++.|+..++.++.. +++|++|+|++|.|+..|+..++..+ .++++|++|+|++|+|+..+
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 9999999999999999999999999999965 89999999999999999999999988 55899999999999999988
Q ss_pred --HHHHHHHHhcCC
Q psy18075 692 --VEEMEKLMKSFG 703 (999)
Q Consensus 692 --~~~L~~~L~~l~ 703 (999)
+..+...+..++
T Consensus 320 ~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 320 DVVDEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhhhcC
Confidence 577887777766
No 2
>2grr_B RAN GTPase-activating protein 1; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} SCOP: a.118.12.1 PDB: 2grn_B 2grp_B 2grq_B 2gro_B 1z5s_C 3uip_C* 3uio_C 3uin_C* 2io2_C 2io3_C 2iy0_C 1kps_B
Probab=100.00 E-value=1e-37 Score=307.36 Aligned_cols=154 Identities=26% Similarity=0.372 Sum_probs=134.2
Q ss_pred ccccccccccccCCcHHHHhccCcchHHHHHHHhhcCccchhHHHHHHHHHHhhccccCCCCcCCCCchhHHHHHHHHHH
Q psy18075 775 QLKQHSVTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSPSSSLFECTKVLYRE 854 (999)
Q Consensus 775 ~~~~~~~~~f~~~Ps~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 854 (999)
+..|+++++|+.+||+++|++||++| +.||.++++ +.|+++++++||||||+|+++.+++. +|++++||||++
T Consensus 11 ~~~p~~v~~FL~~Ps~ekll~Lg~~~-~~li~~q~~---~~d~ek~~~~~lKvSsv~~~~~~vk~---aal~~~daL~k~ 83 (170)
T 2grr_B 11 SPPPADVSTFLAFPSPEKLLRLGPKS-SVLIAQQTD---TSDPEKVVSAFLKVSSVFKDEATVRM---AVQDAVDALMQK 83 (170)
T ss_dssp ---CCCHHHHHHSCCHHHHHHTCTTH-HHHHHHTSC---TTCHHHHHHHHHHHHTTCCSSHHHHH---HHHHHHHHHHHH
T ss_pred CCCchhHHHHHcCCCHHHHHHhcchH-HHHHHHHhc---cccHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHH
Confidence 45789999999999999999999999 899888876 89999999999999999997766664 999999999999
Q ss_pred HhhhhhccCcchhhhHHHHHHhccccccccccccccCcccHHHHHHHHHhcCCCCCcCHHHHHHHhhcCCccccccccch
Q psy18075 855 LFNWASNSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLACMKLMDEKKSRAGIQL 934 (999)
Q Consensus 855 ~f~~~~~~~~~~~~~~~llv~lgllk~e~k~~k~~~~~~g~~~~l~~~~~~~~fp~~~~~~l~~fl~~~~~~~~~~~~~~ 934 (999)
+|+||+++++ .+.|+||||||||||||| ||++|||+||++||+||+||+|||++++++|++|++++.-....-.+.+
T Consensus 84 aF~~a~~~~~--~~~n~LLV~lGLLKSEdk-~k~~~~l~G~~~aL~~avqq~yFp~~~~~~lkaFl~kp~~~~~~~~~~r 160 (170)
T 2grr_B 84 AFNSSSFNSN--TFLTRLLVHMGLLKSEDK-VKAIANLYGPLMALNHMVQQDYFPKALAPLLLAFVTKPNSALESCSFAR 160 (170)
T ss_dssp HHTSTTCCHH--HHHHHHHHHTTSSCCSSC-CCCCSCCHHHHHHHHHHTTSTTSCGGGHHHHHHHHHSCCHHHHTTHHHH
T ss_pred HHHHhccCcc--hHHHHHHHHhcchhhhhc-ccCCCCchHHHHHHHHHhccccccHHHHHHHHHHHhCCcccccccHHHH
Confidence 9999986443 577889999999999995 9999999999999999999999999999999999999955444444444
Q ss_pred HHHH
Q psy18075 935 DTVI 938 (999)
Q Consensus 935 ~~~~ 938 (999)
+.+.
T Consensus 161 ~~l~ 164 (170)
T 2grr_B 161 HSLL 164 (170)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 3
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.98 E-value=2.4e-32 Score=310.93 Aligned_cols=291 Identities=19% Similarity=0.266 Sum_probs=248.6
Q ss_pred EEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCC------C
Q psy18075 408 SLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFG------P 481 (999)
Q Consensus 408 ~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~------~ 481 (999)
...|..+.|++.++..++.++..+++|+.+... .+++.. .....++..+ ..+++|++|+|++|.++ +
T Consensus 8 ~~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~---~n~i~~---~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~ 80 (386)
T 2ca6_A 8 GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLS---GNTIGT---EAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIP 80 (386)
T ss_dssp TCCCEESSCCSHHHHTTSHHHHHCSCCCEEECT---TSEECH---HHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSH
T ss_pred CcccccCCCCHHHHHHHHHHHhcCCCccEEECC---CCCCCH---HHHHHHHHHH-HhCCCccEEeCcccccCccccchh
Confidence 345666788999999999999988887644322 222222 2233333333 35789999999998665 3
Q ss_pred ccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhh
Q psy18075 482 IGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK 561 (999)
Q Consensus 482 ~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~ 561 (999)
.++..++..+.. |++|++|+|++|.|+..++..++..+..++ +|++|+|++|.+++.+...++..+..
T Consensus 81 ~~~~~l~~~l~~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~----------~L~~L~L~~n~l~~~~~~~l~~~l~~ 148 (386)
T 2ca6_A 81 EALRLLLQALLK--CPKLHTVRLSDNAFGPTAQEPLIDFLSKHT----------PLEHLYLHNNGLGPQAGAKIARALQE 148 (386)
T ss_dssp HHHHHHHHHHTT--CTTCCEEECCSCCCCTTTHHHHHHHHHHCT----------TCCEEECCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CCcccEEECCCCcCCHHHHHHHHHHHHhCC----------CCCEEECcCCCCCHHHHHHHHHHHHH
Confidence 467777777754 579999999999999999999999988764 59999999999999999999998888
Q ss_pred c---------ccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc-cccCCCCCcEEEcCCCCC
Q psy18075 562 L---------KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ-ALSKLPSLAILNLGDCLL 631 (999)
Q Consensus 562 ~---------~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~-aL~~l~sL~~LdLs~N~L 631 (999)
+ ++|++|+|++|+|++.++..++..+..+++|++|+|++|.|++.|+..+.. .+..+++|+.|+|++|.+
T Consensus 149 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 8 899999999999999999999999999999999999999999988888877 889999999999999999
Q ss_pred CccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhcc--CCCcCEEEccCCCCChhcHHHHHHHH-hcCCCCCEE
Q psy18075 632 KSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN--KTKLKQINVSENQFGEEGVEEMEKLM-KSFGMAAAL 708 (999)
Q Consensus 632 ~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~--~~sL~~LdLs~N~Is~eg~~~L~~~L-~~l~~L~~L 708 (999)
++.|+..++..+..+++|++|+|++|.|++.|+..++..+.. +++|++|+|++|.|+..|+..++..+ ..+++|+.|
T Consensus 229 ~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 999999999999999999999999999999999999999965 99999999999999999999999988 668999999
Q ss_pred eCCCCCCCC
Q psy18075 709 VLEDDEGEC 717 (999)
Q Consensus 709 ~Ls~N~~e~ 717 (999)
++++|...+
T Consensus 309 ~l~~N~l~~ 317 (386)
T 2ca6_A 309 ELNGNRFSE 317 (386)
T ss_dssp ECTTSBSCT
T ss_pred EccCCcCCc
Confidence 999986443
No 4
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.5e-30 Score=296.50 Aligned_cols=350 Identities=19% Similarity=0.253 Sum_probs=285.7
Q ss_pred ccCCccccCCCCChhh--HHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHH
Q psy18075 344 NHKGRMTDKPNDDVSD--ILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAA 421 (999)
Q Consensus 344 ~~~l~~ld~~~~~~~~--I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~ 421 (999)
+.+++.+++..+...+ +..+...+.. ..+.++.|++++|.+ ++.++..++.++..+++|++|+|++|.+++.++
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~L~~n~i---~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQT-PSCKIQKLSLQNCCL---TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCS-TTCCCCEEECTTSCC---BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhh-CCCceeEEEccCCCC---CHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 3556666666666554 3334444443 223689999999998 788999999999999999999999999999999
Q ss_pred HHHHHHHhh-ChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCcc
Q psy18075 422 KAIADALSK-HEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALE 500 (999)
Q Consensus 422 ~~L~~~L~~-~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~ 500 (999)
..++..+.. .++|+.+ ++..+++... .+..+...+ ..+++|++|+|++|.+++.++..++..+..+. ++|+
T Consensus 131 ~~l~~~l~~~~~~L~~L---~L~~n~l~~~---~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~~L~ 202 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKL---QLEYCSLSAA---SCEPLASVL-RAKPDFKELTVSNNDINEAGVRVLCQGLKDSP-CQLE 202 (461)
T ss_dssp HHHHHHHTSTTCCCCEE---ECTTSCCBGG---GHHHHHHHH-HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSC-CCCC
T ss_pred HHHHHHHhcCCCcceEE---ECCCCCCCHH---HHHHHHHHH-hhCCCCCEEECcCCCcchHHHHHHHHHHhcCC-CCce
Confidence 999987653 3344332 2222233222 222333222 24679999999999999999998988876543 4899
Q ss_pred EEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHh-hcccccccccCCCccCchh
Q psy18075 501 ELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK-KLKTLERVEMPQNGIYHVG 579 (999)
Q Consensus 501 ~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~-~~~sLe~LdLs~N~It~~g 579 (999)
+|+|++|.++..++..++..+..++ +|++|++++|++++.|+..++..+. .+++|++|+|++|.|++.|
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~~----------~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~ 272 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASKA----------SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG 272 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHCT----------TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred EEEccCCCCcHHHHHHHHHHHHhCC----------CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH
Confidence 9999999999999888998888764 4999999999999999888887765 4789999999999999999
Q ss_pred hhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCC-CCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCC
Q psy18075 580 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL-PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE 658 (999)
Q Consensus 580 ~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l-~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~ 658 (999)
+..++..+..+++|++|+|++|.+++.|...++..+... ++|+.|++++|.+++.++..++..+..+++|++|+|++|.
T Consensus 273 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 999999999999999999999999988888888877655 5999999999999999988899999999999999999999
Q ss_pred CCCcchhhHHHhhcc-CCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 659 ISVQGGLDLVKAMKN-KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 659 I~~~g~~~L~~~L~~-~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
|++.|+..++..+.. +++|++|+|++|.|+++|+..++..+..+++|+.|++++|.-
T Consensus 353 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 999888888888876 789999999999999999999999999999999999998865
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.1e-28 Score=285.57 Aligned_cols=322 Identities=20% Similarity=0.270 Sum_probs=199.7
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCC-CcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVK-VLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~-~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
.++.|++++|.+ ++.++..++..+..+. +|++|+|++|.|++.++..+..++..+++|+.+.. ..+++. .
T Consensus 57 ~L~~L~Ls~n~l---~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L---s~n~i~---~ 127 (461)
T 1z7x_W 57 ALAELNLRSNEL---GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL---SDNLLG---D 127 (461)
T ss_dssp TCCEEECTTCCC---HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEEC---CSSBCH---H
T ss_pred CcCEEeCCCCcC---ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEEC---CCCcCc---h
Confidence 455556655555 4444444444444332 46666666666665555555555555555433211 111111 1
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
.+...++..+....++|++|+|++|.+++.++..+...+.. |++|++|+|++|.+++.+...++..+...
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-------- 197 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA--KPDFKELTVSNNDINEAGVRVLCQGLKDS-------- 197 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH--CTTCCEEECCSSBCHHHHHHHHHHHHHHS--------
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh--CCCCCEEECcCCCcchHHHHHHHHHHhcC--------
Confidence 22333444444444566666666666666666666665543 34666666666666666666666555432
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhh-hcccCceeeccCCCCCcCCcccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE-ENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~-~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
.++|++|++++|.+++.++..++..+..+++|++|+|++|.|++.|+..++..+. .+++|++|+|++|.+++.|+..+
T Consensus 198 -~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 198 -PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp -CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred -CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 1347777777777777776667777777777777777777777766666666544 35677777777777776666666
Q ss_pred cccccCCCCCcEEEcCCCCCCccchHHHHHhccCC-CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~-~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
+..+..+++|++|++++|.+++.|...++..+... ++|++|+|++|.+++.++..++..+..+++|++|+|++|.|++.
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 66666677777777777777766666666666555 57777777777777777667777777777777777777777777
Q ss_pred cHHHHHHHHhc-CCCCCEEeCCCCCC
Q psy18075 691 GVEEMEKLMKS-FGMAAALVLEDDEG 715 (999)
Q Consensus 691 g~~~L~~~L~~-l~~L~~L~Ls~N~~ 715 (999)
|...+...+.. +++|+.|++++|.-
T Consensus 357 ~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 357 GVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred cHHHHHHHHcCCCCceEEEECCCCCC
Confidence 77777766665 56777777777644
No 6
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.95 E-value=4.6e-27 Score=265.78 Aligned_cols=281 Identities=18% Similarity=0.225 Sum_probs=203.8
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCC-CcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVK-VLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~-~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
.++.|++++|.+ ++.+...++.++..++ +|++|+|++|.|++.++..++.++...
T Consensus 23 ~L~~L~Ls~n~l---~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~--------------------- 78 (362)
T 3goz_A 23 GVTSLDLSLNNL---YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI--------------------- 78 (362)
T ss_dssp TCCEEECTTSCG---GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS---------------------
T ss_pred CceEEEccCCCC---ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc---------------------
Confidence 477777777777 5666677777777777 777777777777777666666544421
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
+++|++|+|++|.+++.+...++..+.... ++|++|+|++|.|+..+...++.++...
T Consensus 79 -------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~~L~~L~Ls~N~l~~~~~~~l~~~l~~~-------- 136 (362)
T 3goz_A 79 -------------PANVTSLNLSGNFLSYKSSDELVKTLAAIP-FTITVLDLGWNDFSSKSSSEFKQAFSNL-------- 136 (362)
T ss_dssp -------------CTTCCEEECCSSCGGGSCHHHHHHHHHTSC-TTCCEEECCSSCGGGSCHHHHHHHHTTS--------
T ss_pred -------------CCCccEEECcCCcCChHHHHHHHHHHHhCC-CCccEEECcCCcCCcHHHHHHHHHHHhC--------
Confidence 246778888888887777777777765432 4788888888888777777777766542
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcc-cccccccCCCccCchhhhhhhHHhhhcc-cCceeeccCCCCCcCCccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLK-TLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTITYKGAIP 610 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~-sLe~LdLs~N~It~~g~~~La~aL~~~~-~Lr~LdLS~N~Lsd~G~~~ 610 (999)
+.+|++|+|++|++++.|+..++..+..++ +|++|+|++|+|++.+...++..+..++ +|+.|+|++|.|++.|+..
T Consensus 137 -~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~ 215 (362)
T 3goz_A 137 -PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE 215 (362)
T ss_dssp -CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred -CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH
Confidence 134788888888888777777777777665 7888888888887777777777777774 7888888888887777777
Q ss_pred ccccccC-CCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCC---CCCcchhhHHHhhccCCCcCEEEccCCC
Q psy18075 611 LGQALSK-LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE---ISVQGGLDLVKAMKNKTKLKQINVSENQ 686 (999)
Q Consensus 611 L~~aL~~-l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~---I~~~g~~~L~~~L~~~~sL~~LdLs~N~ 686 (999)
++.++.. +++|++|+|++|.+++.|...++..+..+++|+.|+|++|. ++..+...+...+..+++|+.||+++|.
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 7777766 34788888888888777777777777777778888888876 5555666666677777778888888888
Q ss_pred CChhcHHHHHHHHhc
Q psy18075 687 FGEEGVEEMEKLMKS 701 (999)
Q Consensus 687 Is~eg~~~L~~~L~~ 701 (999)
+.+.+...+...++.
T Consensus 296 l~~~~~~~~~~~l~~ 310 (362)
T 3goz_A 296 IHPSHSIPISNLIRE 310 (362)
T ss_dssp CCGGGCHHHHHHHHH
T ss_pred CCCcchHHHHHHHHH
Confidence 777766666655544
No 7
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.95 E-value=5.4e-27 Score=265.21 Aligned_cols=288 Identities=17% Similarity=0.189 Sum_probs=253.4
Q ss_pred EEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHH
Q psy18075 378 LSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRY 457 (999)
Q Consensus 378 LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~ 457 (999)
+.++.+++. ..++..+...++|++|+|++|.|++.+...++.++..++
T Consensus 3 ~~ls~n~~~-------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~------------------------- 50 (362)
T 3goz_A 3 YKLTLHPGS-------NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTP------------------------- 50 (362)
T ss_dssp EECCCCTTC-------CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCC-------------------------
T ss_pred cccccccch-------HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCC-------------------------
Confidence 345555552 245566677777999999999999988887776655221
Q ss_pred hhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCc
Q psy18075 458 LGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLAL 537 (999)
Q Consensus 458 L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sL 537 (999)
.+|++|+|++|.|++.+...++.++... +++|++|+|++|.|+..+...++..+..+. ++|
T Consensus 51 ---------~~L~~L~Ls~N~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~---------~~L 111 (362)
T 3goz_A 51 ---------ASVTSLNLSGNSLGFKNSDELVQILAAI-PANVTSLNLSGNFLSYKSSDELVKTLAAIP---------FTI 111 (362)
T ss_dssp ---------TTCCEEECCSSCGGGSCHHHHHHHHHTS-CTTCCEEECCSSCGGGSCHHHHHHHHHTSC---------TTC
T ss_pred ---------CceeEEECcCCCCCHHHHHHHHHHHhcc-CCCccEEECcCCcCChHHHHHHHHHHHhCC---------CCc
Confidence 2799999999999999999999988754 259999999999999999999999887751 359
Q ss_pred cEEEccCCCCCchhHHHHHHHHhh-cccccccccCCCccCchhhhhhhHHhhhcc-cCceeeccCCCCCcCCcccccccc
Q psy18075 538 KVFIAGRNRLENEGAKMLAAVFKK-LKTLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 538 k~L~Ls~N~L~d~g~~~L~~~L~~-~~sLe~LdLs~N~It~~g~~~La~aL~~~~-~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
++|+|++|++++.+...++..+.. +++|++|+|++|.|++.|+..++.++...+ +|++|+|++|.+++.+...++.++
T Consensus 112 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 191 (362)
T 3goz_A 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL 191 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH
Confidence 999999999999999999999988 469999999999999999999999998887 999999999999999998999988
Q ss_pred cCCC-CCcEEEcCCCCCCccchHHHHHhccCC-CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCC---CChh
Q psy18075 616 SKLP-SLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ---FGEE 690 (999)
Q Consensus 616 ~~l~-sL~~LdLs~N~L~d~g~~~La~aL~~~-~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~---Is~e 690 (999)
..++ +|+.|+|++|.+++.|+..++.++... ++|++|+|++|.|++.|...+...+..+++|+.|+|++|. ++.+
T Consensus 192 ~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~ 271 (362)
T 3goz_A 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH
T ss_pred HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH
Confidence 8885 999999999999999999999999885 6999999999999999999999888999999999999998 8888
Q ss_pred cHHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 691 GVEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 691 g~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
++..+...+..+++|+.|++++|.-.
T Consensus 272 ~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 272 QCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHHhccCCceEEEecCCCcCC
Confidence 88889899999999999999998754
No 8
>2grr_B RAN GTPase-activating protein 1; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} SCOP: a.118.12.1 PDB: 2grn_B 2grp_B 2grq_B 2gro_B 1z5s_C 3uip_C* 3uio_C 3uin_C* 2io2_C 2io3_C 2iy0_C 1kps_B
Probab=99.88 E-value=2.8e-23 Score=204.94 Aligned_cols=135 Identities=28% Similarity=0.406 Sum_probs=115.8
Q ss_pred ccccccchhHhhcCCcHHHHhhcCCchhhhhHhhhcCCchhHHHHHHHHHHhhhcccccCcccccchhhhhhcccccccc
Q psy18075 71 SQLKQHSVTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSLTVLSCSLMKSTVS 150 (999)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (999)
+...|++|++||++||+++|++||++++++|.|+++..++++++++| |||||++++
T Consensus 10 ~~~~p~~v~~FL~~Ps~ekll~Lg~~~~~li~~q~~~~d~ek~~~~~----lKvSsv~~~-------------------- 65 (170)
T 2grr_B 10 SSPPPADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVSAF----LKVSSVFKD-------------------- 65 (170)
T ss_dssp ----CCCHHHHHHSCCHHHHHHTCTTHHHHHHHTSCTTCHHHHHHHH----HHHHTTCCS--------------------
T ss_pred CCCCchhHHHHHcCCCHHHHHHhcchHHHHHHHHhccccHHHHHHHH----HHHHHHhcc--------------------
Confidence 44579999999999999999999999999999999999999999999 999999997
Q ss_pred cccchhhhhhhccccccchhhHHHHHHHHhhhhcccccccccCCCCcchhhhHHHHHHHHHhhhcCCCCcHHHHHHHHhh
Q psy18075 151 LKTENLVFVLTKNHCAYHVDRYLESMLLAIMKVSSLVPSTTTLPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHL 230 (999)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~n~lL~~~ 230 (999)
++.++.++.++. |+|||+||+||...+. + ..|.+|+||
T Consensus 66 ----------------------------~~~vk~aal~~~------------daL~k~aF~~a~~~~~-~-~~n~LLV~l 103 (170)
T 2grr_B 66 ----------------------------EATVRMAVQDAV------------DALMQKAFNSSSFNSN-T-FLTRLLVHM 103 (170)
T ss_dssp ----------------------------SHHHHHHHHHHH------------HHHHHHHHTSTTCCHH-H-HHHHHHHHT
T ss_pred ----------------------------cHHHHHHHHHHH------------HHHHHHHHHHhccCcc-h-HHHHHHHHh
Confidence 455666666555 9999999999954444 4 558899999
Q ss_pred ccccccCCCcccccchhhHHHhhhhhhccccccccchHHHHH
Q psy18075 231 GLIKCEDKSFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLA 272 (999)
Q Consensus 231 ll~k~e~~~~r~~~~LqG~l~~~~~v~~vN~f~Cl~e~~~~s 272 (999)
||+|+|++ +|+.|.++||+.++++++..+||+--+...+++
T Consensus 104 GLLKSEdk-~k~~~~l~G~~~aL~~avqq~yFp~~~~~~lka 144 (170)
T 2grr_B 104 GLLKSEDK-VKAIANLYGPLMALNHMVQQDYFPKALAPLLLA 144 (170)
T ss_dssp TSSCCSSC-CCCCSCCHHHHHHHHHHTTSTTSCGGGHHHHHH
T ss_pred cchhhhhc-ccCCCCchHHHHHHHHHhccccccHHHHHHHHH
Confidence 99999996 899999999999999999999999776655554
No 9
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.86 E-value=7.5e-22 Score=225.12 Aligned_cols=214 Identities=20% Similarity=0.214 Sum_probs=186.0
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
+.|+.|+|++|.|++.+...++.++... +++|++|+|++|.|++.+...++..+.. |+.|+|++|+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-------------L~~L~Ls~n~ 137 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSG-RHALDEVNLASCQLDPAGLRTLLPVFLR-------------ARKLGLQLNS 137 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSC-SSCEEEEECTTCCCCHHHHHHTHHHHHT-------------EEEEECCSSC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhC-CCCceEEEecCCCCCHHHHHHHHHHHHh-------------ccHhhcCCCC
Confidence 5899999999999999999999998754 3589999999999999999888888764 8999999999
Q ss_pred CCchhHHHHHHHHh-hcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 547 LENEGAKMLAAVFK-KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 547 L~d~g~~~L~~~L~-~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
|++.|+..++.++. .+++|++|+|++|.|++.|+..++.++..+++|++|+|++|.|++.|+..++.++..+++|+.|+
T Consensus 138 l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 138 LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEE
T ss_pred CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEE
Confidence 99999999999986 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccC-CCcCEEE--ccCCCCChhcHHH
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQIN--VSENQFGEEGVEE 694 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~-~sL~~Ld--Ls~N~Is~eg~~~ 694 (999)
|++|.|++.|+..++.++..+++|++|+|++|.|++.|+..+....... ..|+.+. +.+|.++++....
T Consensus 218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~~ 289 (372)
T 3un9_A 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVI 289 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHHH
Confidence 9999999999999999999999999999999999999998888755443 2388888 8888887754443
No 10
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=221.79 Aligned_cols=207 Identities=22% Similarity=0.281 Sum_probs=141.8
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcC-CCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEV-KVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~-~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
.++.|++++|.+ +..++..++.++... ++|++|+|++|.|++.++..++.++.
T Consensus 73 ~L~~L~Ls~n~l---~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~----------------------- 126 (372)
T 3un9_A 73 SLRQLNLAGVRM---TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL----------------------- 126 (372)
T ss_dssp TCCEEECTTSCC---CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH-----------------------
T ss_pred hCCEEEecCCCC---CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH-----------------------
Confidence 455677777777 677777777777754 57888888888887776666554332
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
+|++|+|++|.|++.++..++.++..+. ++|++|+|++|.|++.++..++.++..+
T Consensus 127 ---------------~L~~L~Ls~n~l~~~~~~~L~~~L~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~L~~~-------- 182 (372)
T 3un9_A 127 ---------------RARKLGLQLNSLGPEACKDLRDLLLHDQ-CQITTLRLSNNPLTAAGVAVLMEGLAGN-------- 182 (372)
T ss_dssp ---------------TEEEEECCSSCCCHHHHHHHHHHHHSTT-CCCCEEECCSSCCHHHHHHHHHHHHHTC--------
T ss_pred ---------------hccHhhcCCCCCCHHHHHHHHHHHHhcC-CccceeeCCCCCCChHHHHHHHHHHhcC--------
Confidence 5677788888887777777777775443 3777777777777777777777777654
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
++|++|+|++|.|++.|+..++.++..+++|++|+|++|.|++.|+..++.++..+++|++|+|++|.|++.|+..++
T Consensus 183 --~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 183 --TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp --SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred --CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 337777777777777777777777777777777777777777777777777777777777777777777777766666
Q ss_pred ccccCC-CCCcEEE--cCCCCCC
Q psy18075 613 QALSKL-PSLAILN--LGDCLLK 632 (999)
Q Consensus 613 ~aL~~l-~sL~~Ld--Ls~N~L~ 632 (999)
...... ..|+.+. +..+.++
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HCC------CEEECCCC----CH
T ss_pred HHhcCCCccchhhHhhhcCCccC
Confidence 543322 1266665 5555554
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=1.7e-19 Score=208.38 Aligned_cols=166 Identities=19% Similarity=0.262 Sum_probs=122.9
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHh-----------------------------------hcccccccccCCCccCch
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFK-----------------------------------KLKTLERVEMPQNGIYHV 578 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~-----------------------------------~~~sLe~LdLs~N~It~~ 578 (999)
.++|+.|++++|++.......+...+. ..++|+.|+|++|.|+..
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc
Confidence 357899999999888766655544321 014677788888887754
Q ss_pred hhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCC
Q psy18075 579 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE 658 (999)
Q Consensus 579 g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~ 658 (999)
++..+..+++|+.|+|++|.+.. ..+..+..+++|+.|+|++|.++... +..+..+++|++|+|++|.
T Consensus 291 ----~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~ 358 (455)
T 3v47_A 291 ----LKSVFSHFTDLEQLTLAQNEINK----IDDNAFWGLTHLLKLNLSQNFLGSID----SRMFENLDKLEVLDLSYNH 358 (455)
T ss_dssp ----CTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCEEC----GGGGTTCTTCCEEECCSSC
T ss_pred ----chhhcccCCCCCEEECCCCcccc----cChhHhcCcccCCEEECCCCccCCcC----hhHhcCcccCCEEECCCCc
Confidence 44566778899999999998884 23446677889999999999886443 4556778999999999999
Q ss_pred CCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCCCC
Q psy18075 659 ISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSD 719 (999)
Q Consensus 659 I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ed 719 (999)
|+.. .+..+..+++|++|+|++|.|+... ...+..+++|+.|++++|.-..+-
T Consensus 359 l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 359 IRAL----GDQSFLGLPNLKELALDTNQLKSVP----DGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CCEE----CTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cccc----ChhhccccccccEEECCCCccccCC----HhHhccCCcccEEEccCCCcccCC
Confidence 8763 2345677899999999999987632 234678889999999998776544
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=1.4e-17 Score=185.67 Aligned_cols=281 Identities=16% Similarity=0.180 Sum_probs=180.1
Q ss_pred ccCCccccCCCCChhhHHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHH
Q psy18075 344 NHKGRMTDKPNDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKA 423 (999)
Q Consensus 344 ~~~l~~ld~~~~~~~~I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~ 423 (999)
..+++.+++......++.. +.. -..++.|++++|.+... ..+..+++|++|+|++|.+.....
T Consensus 65 ~~~L~~L~l~~n~i~~~~~----~~~--l~~L~~L~L~~n~i~~~---------~~~~~l~~L~~L~l~~n~i~~~~~-- 127 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP----LSN--LVKLTNLYIGTNKITDI---------SALQNLTNLRELYLNEDNISDISP-- 127 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG----GTT--CTTCCEEECCSSCCCCC---------GGGTTCTTCSEEECTTSCCCCCGG--
T ss_pred cCCccEEEccCCccccchh----hhc--CCcCCEEEccCCcccCc---------hHHcCCCcCCEEECcCCcccCchh--
Confidence 4455555555555554433 111 12567777777776321 236677778888887777765322
Q ss_pred HHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEE
Q psy18075 424 IADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELK 503 (999)
Q Consensus 424 L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~ 503 (999)
+..+++|+.+... .+.....++. +..+++|+.|++++|.+..... + ..+++|++|+
T Consensus 128 ----~~~l~~L~~L~l~---~n~~~~~~~~---------~~~l~~L~~L~l~~~~~~~~~~--~------~~l~~L~~L~ 183 (347)
T 4fmz_A 128 ----LANLTKMYSLNLG---ANHNLSDLSP---------LSNMTGLNYLTVTESKVKDVTP--I------ANLTDLYSLS 183 (347)
T ss_dssp ----GTTCTTCCEEECT---TCTTCCCCGG---------GTTCTTCCEEECCSSCCCCCGG--G------GGCTTCSEEE
T ss_pred ----hccCCceeEEECC---CCCCcccccc---------hhhCCCCcEEEecCCCcCCchh--h------ccCCCCCEEE
Confidence 3334444332211 1111111111 2345678888888888765543 1 2346788888
Q ss_pred ccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhh
Q psy18075 504 LNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL 583 (999)
Q Consensus 504 Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~L 583 (999)
+++|.++.... +.. +.+|+.|++++|.+.+... +..+++|++|+|++|.++...
T Consensus 184 l~~n~l~~~~~------~~~----------l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~~---- 237 (347)
T 4fmz_A 184 LNYNQIEDISP------LAS----------LTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDLS---- 237 (347)
T ss_dssp CTTSCCCCCGG------GGG----------CTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCG----
T ss_pred ccCCccccccc------ccC----------CCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCCc----
Confidence 88887764332 222 2458888888888875432 566788888888888887642
Q ss_pred hHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcc
Q psy18075 584 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 663 (999)
Q Consensus 584 a~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g 663 (999)
. +..+++|++|+|++|.++. + ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.++..
T Consensus 238 -~-~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~- 302 (347)
T 4fmz_A 238 -P-LANLSQLTWLEIGTNQISD-----I-NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNE- 302 (347)
T ss_dssp -G-GTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCGG-
T ss_pred -c-hhcCCCCCEEECCCCccCC-----C-hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcCCcCCCc-
Confidence 1 6677888888888888874 2 3466788888888888888753 3456678888888888888763
Q ss_pred hhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 664 GLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 664 ~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
....+..+++|++|++++|+++.... +..+++|+.|++++|.-
T Consensus 303 ---~~~~l~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 303 ---DMEVIGGLTNLTTLFLSQNHITDIRP------LASLSKMDSADFANQVI 345 (347)
T ss_dssp ---GHHHHHTCTTCSEEECCSSSCCCCGG------GGGCTTCSEESSSCC--
T ss_pred ---ChhHhhccccCCEEEccCCccccccC------hhhhhccceeehhhhcc
Confidence 34556678888888888888876321 67788888888888753
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=1.8e-18 Score=199.86 Aligned_cols=316 Identities=16% Similarity=0.126 Sum_probs=186.5
Q ss_pred cCCccccCCCCChhhHHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHH
Q psy18075 345 HKGRMTDKPNDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAI 424 (999)
Q Consensus 345 ~~l~~ld~~~~~~~~I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L 424 (999)
..++.+++..+....+.. ..+... ..++.|++++|.+.. . .-..++..+++|++|+|++|.+.......+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~--~~~~~l--~~L~~L~L~~n~~~~--~----i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE--TSFSRL--QDLQFLKVEQQTPGL--V----IRNNTFRGLSSLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp TTCCEEECCSSCCCEECT--TTTSSC--TTCCEEECCCCSTTC--E----ECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred CccCEEEecCCccCcCCh--hHhccC--ccccEEECcCCcccc--e----ECcccccccccCCEEeCCCCccCccChhhc
Confidence 344555555554444321 111111 256677777776521 0 001235566777777777777765433222
Q ss_pred HHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEc
Q psy18075 425 ADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKL 504 (999)
Q Consensus 425 ~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~L 504 (999)
..+++|+.+ ++..+++...+|. ...+..+++|++|+|++|.+.......+ + ..+++|++|+|
T Consensus 100 ----~~l~~L~~L---~L~~n~l~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~--~~l~~L~~L~L 161 (455)
T 3v47_A 100 ----NGLANLEVL---TLTQCNLDGAVLS------GNFFKPLTSLEMLVLRDNNIKKIQPASF---F--LNMRRFHVLDL 161 (455)
T ss_dssp ----TTCTTCCEE---ECTTSCCBTHHHH------SSTTTTCTTCCEEECCSSBCCSCCCCGG---G--GGCTTCCEEEC
T ss_pred ----cCcccCCEE---eCCCCCCCccccC------cccccCcccCCEEECCCCccCccCcccc---c--CCCCcccEEeC
Confidence 233344322 2222222221111 1123345677777777777755432221 1 12357777777
Q ss_pred cCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHH----HHHhhcccccccccCCCccCchhh
Q psy18075 505 NNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA----AVFKKLKTLERVEMPQNGIYHVGI 580 (999)
Q Consensus 505 s~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~----~~L~~~~sLe~LdLs~N~It~~g~ 580 (999)
++|.++......+... ...+|+.|++++|.+.+.+...+. ..+..+++|++|+|++|.++....
T Consensus 162 ~~n~l~~~~~~~l~~l------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 162 TFNKVKSICEEDLLNF------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229 (455)
T ss_dssp TTCCBSCCCTTTSGGG------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred CCCcccccChhhhhcc------------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence 7777764433333221 113577888888777653322111 123345789999999999987654
Q ss_pred hhhhHHhh-----------------------------------hcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 581 TALSDAFE-----------------------------------ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 581 ~~La~aL~-----------------------------------~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
..+...+. ..++|+.|+|++|.+.. .++..+..+++|+.|+
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~ 305 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA----LLKSVFSHFTDLEQLT 305 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE----ECTTTTTTCTTCCEEE
T ss_pred hhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc----cchhhcccCCCCCEEE
Confidence 44443211 11467777888777764 3455677788999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCC
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L 705 (999)
|++|.++... +..+..+++|+.|+|++|.|+.. .+..+..+++|++|+|++|.|+.. .+..+..+++|
T Consensus 306 Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L 373 (455)
T 3v47_A 306 LAQNEINKID----DNAFWGLTHLLKLNLSQNFLGSI----DSRMFENLDKLEVLDLSYNHIRAL----GDQSFLGLPNL 373 (455)
T ss_dssp CTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCEE----CGGGGTTCTTCCEEECCSSCCCEE----CTTTTTTCTTC
T ss_pred CCCCcccccC----hhHhcCcccCCEEECCCCccCCc----ChhHhcCcccCCEEECCCCccccc----Chhhccccccc
Confidence 9999987543 34566778999999999988753 244567889999999999998763 23556778999
Q ss_pred CEEeCCCCCCC
Q psy18075 706 AALVLEDDEGE 716 (999)
Q Consensus 706 ~~L~Ls~N~~e 716 (999)
+.|++++|.-.
T Consensus 374 ~~L~L~~N~l~ 384 (455)
T 3v47_A 374 KELALDTNQLK 384 (455)
T ss_dssp CEEECCSSCCS
T ss_pred cEEECCCCccc
Confidence 99999988654
No 14
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=1.7e-17 Score=198.02 Aligned_cols=299 Identities=17% Similarity=0.152 Sum_probs=200.1
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCc-----
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMK----- 448 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~----- 448 (999)
.++.|+++++.+ +......+...+..+++|+.|+|++|.+.. +...+...++|+.+.... +.+...
T Consensus 193 ~L~~L~L~~n~~---~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~ 263 (592)
T 3ogk_B 193 SLEVLNFYMTEF---AKISPKDLETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGGS-LNEDIGMPEKY 263 (592)
T ss_dssp CCCEEECTTCCC---SSCCHHHHHHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEECB-CCCCTTCTTSS
T ss_pred CccEEEeeccCC---CccCHHHHHHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhcccc-cccccchHHHH
Confidence 567778877777 322345566666777888888888877654 223344445553322211 100000
Q ss_pred ccc--chHHH---------HhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHH
Q psy18075 449 TEI--PDALR---------YLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLL 517 (999)
Q Consensus 449 ~~i--p~~l~---------~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~L 517 (999)
..+ +..+. .....++..+++|++|+|++|.+++.++..+ + ..|++|++|+|+ +.+++.+...+
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~---~--~~~~~L~~L~L~-~~~~~~~l~~~ 337 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL---I--QKCPNLEVLETR-NVIGDRGLEVL 337 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH---H--TTCTTCCEEEEE-GGGHHHHHHHH
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH---H--HhCcCCCEEecc-CccCHHHHHHH
Confidence 000 00000 0001223356799999999999876665433 2 346899999999 66766665555
Q ss_pred HHHHhhhccCCcCCCCCCCccEEEcc-----------CCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHH
Q psy18075 518 SKALHDCYESSKKEGSPLALKVFIAG-----------RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 586 (999)
Q Consensus 518 a~~L~~~~~~s~~~g~~~sLk~L~Ls-----------~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~a 586 (999)
+.. + ++|++|+++ .|.+++.++..+. ..+++|++|+++.|.+++.++..++.
T Consensus 338 ~~~---~----------~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~l~~~~~~~l~~- 400 (592)
T 3ogk_B 338 AQY---C----------KQLKRLRIERGADEQGMEDEEGLVSQRGLIALA---QGCQELEYMAVYVSDITNESLESIGT- 400 (592)
T ss_dssp HHH---C----------TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH---HHCTTCSEEEEEESCCCHHHHHHHHH-
T ss_pred HHh---C----------CCCCEEEeecCccccccccccCccCHHHHHHHH---hhCccCeEEEeecCCccHHHHHHHHh-
Confidence 443 2 349999999 4788888776554 44789999999999999887666554
Q ss_pred hhhcccCceeecc----CCCCCcC----CcccccccccCCCCCcEEEcCCCC--CCccchHHHHHhccCCCCCCEEEccC
Q psy18075 587 FEENKNLRHLNLN----DNTITYK----GAIPLGQALSKLPSLAILNLGDCL--LKSAGASSIAKYLTDNTTLEDVNLTC 656 (999)
Q Consensus 587 L~~~~~Lr~LdLS----~N~Lsd~----G~~~L~~aL~~l~sL~~LdLs~N~--L~d~g~~~La~aL~~~~~L~~LdLs~ 656 (999)
.+++|+.|+|+ .|.+++. |+.. .+..+++|+.|+++.|. +++.+...++. .+++|+.|+|++
T Consensus 401 --~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~---~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~---~~~~L~~L~L~~ 472 (592)
T 3ogk_B 401 --YLKNLCDFRLVLLDREERITDLPLDNGVRS---LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ---YSPNVRWMLLGY 472 (592)
T ss_dssp --HCCSCCEEEEEECSCCSCCSSCCCHHHHHH---HHHHCTTCCEEEEECCGGGCCHHHHHHHHH---SCTTCCEEEECS
T ss_pred --hCCCCcEEEEeecCCCccccCchHHHHHHH---HHHhCCCCCEEEEecCCCCccHHHHHHHHH---hCccceEeeccC
Confidence 37899999996 6777753 3333 34568899999998765 77776655554 468899999999
Q ss_pred CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCCC
Q psy18075 657 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECS 718 (999)
Q Consensus 657 N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~e 718 (999)
|.+++.+. ...+..+++|++|+|++|.|++.+... .+..+++|+.|++++|.-.+.
T Consensus 473 n~l~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 473 VGESDEGL---MEFSRGCPNLQKLEMRGCCFSERAIAA---AVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCSSHHHH---HHHHTCCTTCCEEEEESCCCBHHHHHH---HHHHCSSCCEEEEESCBCCTT
T ss_pred CCCCHHHH---HHHHhcCcccCeeeccCCCCcHHHHHH---HHHhcCccCeeECcCCcCCHH
Confidence 99987654 344567899999999999997765444 445788999999999875444
No 15
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.72 E-value=2.5e-18 Score=176.94 Aligned_cols=150 Identities=16% Similarity=0.211 Sum_probs=112.4
Q ss_pred HHHHHHHHhhcccccccccCCC-ccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCC
Q psy18075 552 AKMLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL 630 (999)
Q Consensus 552 ~~~L~~~L~~~~sLe~LdLs~N-~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~ 630 (999)
...++..+..+++|++|+|++| .|++.|+..|+.++..+++|++|+|++|.|++.|+..++.++..+++|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4456666677777777777777 777777777777777777777777777777777777777777777777777777777
Q ss_pred CCccchHHHHHhccCCCCCCEEEc--cCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCC
Q psy18075 631 LKSAGASSIAKYLTDNTTLEDVNL--TCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG 703 (999)
Q Consensus 631 L~d~g~~~La~aL~~~~~L~~LdL--s~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~ 703 (999)
|++.|+..|+.++..+++|++|+| ++|.|++.|+..++.++..+++|++|+|++|.|+..|. ++.++..+.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~--i~~~L~~N~ 177 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNN 177 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHH--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHH--HHHHHHhhH
Confidence 777777777777777777888888 77888888877788888778888888888888777653 555555544
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.72 E-value=9.7e-19 Score=216.85 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=20.3
Q ss_pred CccEEEeccCCCcCCChhhHHHHH-HHHhcCCCcCEEEccCCCCCh
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIV-DAINEVKVLVSLNLEGNTLGV 418 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~-~aL~~~~~L~~LdLs~N~L~~ 418 (999)
.++.|++++|.+.- .++ ..+..+++|++|+|++|.+..
T Consensus 319 ~L~~L~L~~n~l~~-------~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 319 LLESLALSSNNFSG-------ELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp TCCEEECCSSEEEE-------ECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred CccEEECCCCcccC-------cCCHHHHhcCCCCCEEeCcCCccCc
Confidence 45566666665520 111 125566666666666666543
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.71 E-value=2.7e-18 Score=212.86 Aligned_cols=210 Identities=20% Similarity=0.202 Sum_probs=143.0
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|+.|+|++|.+.......+. .+++|++|+|++|.++.... ..+. .+++|++|+|++|
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~------~l~~L~~L~L~~N~l~~~~p----~~l~----------~l~~L~~L~L~~N 500 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELM------YVKTLETLILDFNDLTGEIP----SGLS----------NCTNLNWISLSNN 500 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGG------GCTTCCEEECCSSCCCSCCC----GGGG----------GCTTCCEEECCSS
T ss_pred CCCCCEEECCCCcccCcCCHHHc------CCCCceEEEecCCcccCcCC----HHHh----------cCCCCCEEEccCC
Confidence 35666666666666543333231 23567777777776653221 1122 2356888888888
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcc----------------
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAI---------------- 609 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~---------------- 609 (999)
++... ++..+..+++|++|+|++|.++.. ++..+..+++|+.|+|++|.+...--.
T Consensus 501 ~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 501 RLTGE----IPKWIGRLENLAILKLSNNSFSGN----IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CCCSC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred ccCCc----CChHHhcCCCCCEEECCCCcccCc----CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 87743 334566678888888888888743 566677788888888888876521000
Q ss_pred --------------------------------------------------cccccccCCCCCcEEEcCCCCCCccchHHH
Q psy18075 610 --------------------------------------------------PLGQALSKLPSLAILNLGDCLLKSAGASSI 639 (999)
Q Consensus 610 --------------------------------------------------~L~~aL~~l~sL~~LdLs~N~L~d~g~~~L 639 (999)
.++..+..+++|+.|+|++|.++.. +
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~----i 648 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY----I 648 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC----C
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc----C
Confidence 0111234456788899999988632 5
Q ss_pred HHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 640 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 640 a~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
+..+..++.|+.|+|++|.++. .++..+..+++|+.|||++|.++.. ++..+..++.|+.|++++|.-
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g----~ip~~l~~L~~L~~LdLs~N~l~g~----ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISG----SIPDEVGDLRGLNILDLSSNKLDGR----IPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCEEC----CCGGGGGCCCCSEEECCSSEE
T ss_pred CHHHhccccCCEEeCcCCccCC----CCChHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECcCCcc
Confidence 6677778889999999998886 4667788889999999999998763 567788889999999988854
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=5.1e-16 Score=173.02 Aligned_cols=258 Identities=18% Similarity=0.230 Sum_probs=190.6
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+.-. . . +..+++|++|+|++|.+..- ..+..+++|+.+... .+++.. ++.
T Consensus 67 ~L~~L~l~~n~i~~~---~-----~-~~~l~~L~~L~L~~n~i~~~------~~~~~l~~L~~L~l~---~n~i~~-~~~ 127 (347)
T 4fmz_A 67 NLEYLNLNGNQITDI---S-----P-LSNLVKLTNLYIGTNKITDI------SALQNLTNLRELYLN---EDNISD-ISP 127 (347)
T ss_dssp TCCEEECCSSCCCCC---G-----G-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCSEEECT---TSCCCC-CGG
T ss_pred CccEEEccCCccccc---h-----h-hhcCCcCCEEEccCCcccCc------hHHcCCCcCCEEECc---CCcccC-chh
Confidence 688899999988421 1 1 77889999999999988763 134555666443222 222221 221
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCC-CCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L-~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
+..+++|+.|++++|.. ..... + ..+++|++|++++|.++.... +..
T Consensus 128 ---------~~~l~~L~~L~l~~n~~~~~~~~--~------~~l~~L~~L~l~~~~~~~~~~------~~~--------- 175 (347)
T 4fmz_A 128 ---------LANLTKMYSLNLGANHNLSDLSP--L------SNMTGLNYLTVTESKVKDVTP------IAN--------- 175 (347)
T ss_dssp ---------GTTCTTCCEEECTTCTTCCCCGG--G------TTCTTCCEEECCSSCCCCCGG------GGG---------
T ss_pred ---------hccCCceeEEECCCCCCcccccc--h------hhCCCCcEEEecCCCcCCchh------hcc---------
Confidence 23567899999998854 33221 2 345789999999998864432 222
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
.++|+.|++++|++..... +..+++|+.|++++|.++.... +..+++|+.|+|++|.++.. .
T Consensus 176 -l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~-----~ 237 (347)
T 4fmz_A 176 -LTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDL-----S 237 (347)
T ss_dssp -CTTCSEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCC-----G
T ss_pred -CCCCCEEEccCCccccccc------ccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCC-----c
Confidence 3569999999999886432 6678999999999999986432 66789999999999999853 2
Q ss_pred ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcH
Q psy18075 613 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 692 (999)
Q Consensus 613 ~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~ 692 (999)
. +..+++|++|++++|.+++. ..+..+++|+.|++++|.|+.. ..+..+++|+.|++++|.++...
T Consensus 238 ~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~~- 303 (347)
T 4fmz_A 238 P-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNED- 303 (347)
T ss_dssp G-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCGGG-
T ss_pred c-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcCCcCCCcC-
Confidence 2 67889999999999999753 3577789999999999999873 35778999999999999998753
Q ss_pred HHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 693 EEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 693 ~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
...+..+++|+.|++++|.-.+
T Consensus 304 ---~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 304 ---MEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp ---HHHHHTCTTCSEEECCSSSCCC
T ss_pred ---hhHhhccccCCEEEccCCcccc
Confidence 4566789999999999987643
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=1.5e-17 Score=189.05 Aligned_cols=210 Identities=16% Similarity=0.195 Sum_probs=130.7
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhc---cCCcCCCCCCCccEEEc
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCY---ESSKKEGSPLALKVFIA 542 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~---~~s~~~g~~~sLk~L~L 542 (999)
+++|++|+|++|.+.......+ ..+++|++|+|++|.++......+... .... +.....+.+.+|+.|++
T Consensus 140 l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~L~~L~l 212 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIEDDTF------QATTSLQNLQLSSNRLTHVDLSLIPSL-FHANVSYNLLSTLAIPIAVEELDA 212 (390)
T ss_dssp CTTCCEEECCSSCCCBCCTTTT------SSCTTCCEEECCSSCCSBCCGGGCTTC-SEEECCSSCCSEEECCSSCSEEEC
T ss_pred CCCCcEEECCCCccCccChhhc------cCCCCCCEEECCCCcCCcccccccccc-ceeecccccccccCCCCcceEEEC
Confidence 4566666666666654433222 123466666666666654332222110 0000 00001123456777777
Q ss_pred cCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCc
Q psy18075 543 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 622 (999)
Q Consensus 543 s~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~ 622 (999)
++|.+..... ...++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.. ..+..+..+++|+
T Consensus 213 ~~n~l~~~~~-------~~~~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 213 SHNSINVVRG-------PVNVELTILKLQHNNLTDT------AWLLNYPGLVEVDLSYNELEK----IMYHPFVKMQRLE 275 (390)
T ss_dssp CSSCCCEEEC-------CCCSSCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCE----EESGGGTTCSSCC
T ss_pred CCCeeeeccc-------cccccccEEECCCCCCccc------HHHcCCCCccEEECCCCcCCC----cChhHccccccCC
Confidence 7777764321 1246788888888888753 356677888888888888874 2355666788888
Q ss_pred EEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcC
Q psy18075 623 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 702 (999)
Q Consensus 623 ~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l 702 (999)
.|+|++|.++.. ...+..+++|+.|+|++|+++. ++..+..+++|+.|+|++|.|+... +..+
T Consensus 276 ~L~L~~n~l~~~-----~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~l~~L~~L~L~~N~i~~~~-------~~~~ 338 (390)
T 3o6n_A 276 RLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTLK-------LSTH 338 (390)
T ss_dssp EEECCSSCCCEE-----ECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCCCCC-------CCTT
T ss_pred EEECCCCcCccc-----CcccCCCCCCCEEECCCCccee-----cCccccccCcCCEEECCCCccceeC-------chhh
Confidence 888888888642 2333456888888888888874 2333456778888888888887642 5667
Q ss_pred CCCCEEeCCCCCCC
Q psy18075 703 GMAAALVLEDDEGE 716 (999)
Q Consensus 703 ~~L~~L~Ls~N~~e 716 (999)
++|+.|++++|...
T Consensus 339 ~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 339 HTLKNLTLSHNDWD 352 (390)
T ss_dssp CCCSEEECCSSCEE
T ss_pred ccCCEEEcCCCCcc
Confidence 88888888887654
No 20
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=4.6e-17 Score=194.14 Aligned_cols=309 Identities=15% Similarity=0.170 Sum_probs=206.5
Q ss_pred ccCCccccCCCCChh-----hHHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCCh
Q psy18075 344 NHKGRMTDKPNDDVS-----DILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGV 418 (999)
Q Consensus 344 ~~~l~~ld~~~~~~~-----~I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~ 418 (999)
..+++.+++...... .+..+.... . .++.|++.+|.+. .++..+..+++|++|+++++....
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~-~----~L~~L~L~~~~~~--------~l~~~~~~~~~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNC-R----SLVSVKVGDFEIL--------ELVGFFKAAANLEEFCGGSLNEDI 257 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHC-T----TCCEEECSSCBGG--------GGHHHHHHCTTCCEEEECBCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhC-C----CCcEEeccCccHH--------HHHHHHhhhhHHHhhccccccccc
Confidence 445555555544443 333333322 2 6889999998872 255778889999999998532221
Q ss_pred h----------------------HHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecC
Q psy18075 419 N----------------------AAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSD 476 (999)
Q Consensus 419 ~----------------------~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~ 476 (999)
. ....+...+...++|+.+ ++..+.+. ...+ ..++..+++|++|+|+
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L---~Ls~~~l~---~~~~----~~~~~~~~~L~~L~L~- 326 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL---DLLYALLE---TEDH----CTLIQKCPNLEVLETR- 326 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE---EETTCCCC---HHHH----HHHHTTCTTCCEEEEE-
T ss_pred chHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE---ecCCCcCC---HHHH----HHHHHhCcCCCEEecc-
Confidence 0 001111112222333221 11111111 0111 1234568899999999
Q ss_pred CCCCCccHHHHHHHHhccCCCCccEEEccC-----------CccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 477 NAFGPIGVEGLADLLRSSCCFALEELKLNN-----------NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 477 N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~-----------n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+.+++.++..+... |++|++|+|++ +.++..+...++.. + ++|++|+++.|
T Consensus 327 ~~~~~~~l~~~~~~-----~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~---~----------~~L~~L~l~~~ 388 (592)
T 3ogk_B 327 NVIGDRGLEVLAQY-----CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG---C----------QELEYMAVYVS 388 (592)
T ss_dssp GGGHHHHHHHHHHH-----CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH---C----------TTCSEEEEEES
T ss_pred CccCHHHHHHHHHh-----CCCCCEEEeecCccccccccccCccCHHHHHHHHhh---C----------ccCeEEEeecC
Confidence 67777776666543 57999999994 57877766665443 2 45999999999
Q ss_pred CCCchhHHHHHHHHhhcccccccccC----CCccCch----hhhhhhHHhhhcccCceeeccCC--CCCcCCcccccccc
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMP----QNGIYHV----GITALSDAFEENKNLRHLNLNDN--TITYKGAIPLGQAL 615 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs----~N~It~~----g~~~La~aL~~~~~Lr~LdLS~N--~Lsd~G~~~L~~aL 615 (999)
++++.+...++. .+++|++|+|+ .|.+++. |+. ..+..+++|+.|+|++| .+++.+...++.
T Consensus 389 ~l~~~~~~~l~~---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~---~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~-- 460 (592)
T 3ogk_B 389 DITNESLESIGT---YLKNLCDFRLVLLDREERITDLPLDNGVR---SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ-- 460 (592)
T ss_dssp CCCHHHHHHHHH---HCCSCCEEEEEECSCCSCCSSCCCHHHHH---HHHHHCTTCCEEEEECCGGGCCHHHHHHHHH--
T ss_pred CccHHHHHHHHh---hCCCCcEEEEeecCCCccccCchHHHHHH---HHHHhCCCCCEEEEecCCCCccHHHHHHHHH--
Confidence 999887766554 37899999996 6778863 443 44566899999999864 477766655543
Q ss_pred cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHH
Q psy18075 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 695 (999)
Q Consensus 616 ~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L 695 (999)
.+++|+.|+|++|.+++.+. ...+..+++|++|+|++|.|++.+... .+..+++|++|+|++|++++.|+..+
T Consensus 461 -~~~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 461 -YSPNVRWMLLGYVGESDEGL---MEFSRGCPNLQKLEMRGCCFSERAIAA---AVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp -SCTTCCEEEECSCCSSHHHH---HHHHTCCTTCCEEEEESCCCBHHHHHH---HHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred -hCccceEeeccCCCCCHHHH---HHHHhcCcccCeeeccCCCCcHHHHHH---HHHhcCccCeeECcCCcCCHHHHHHH
Confidence 57889999999999987664 444567799999999999997765444 34568999999999999999887766
Q ss_pred HHHHhcCCCCCEEeCCC
Q psy18075 696 EKLMKSFGMAAALVLED 712 (999)
Q Consensus 696 ~~~L~~l~~L~~L~Ls~ 712 (999)
+ ..++.+....+..
T Consensus 534 ~---~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 534 Q---MARPYWNIELIPS 547 (592)
T ss_dssp G---GCCTTEEEEEECC
T ss_pred H---HhCCCcEEEEecC
Confidence 4 3467776665544
No 21
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=1.8e-16 Score=188.86 Aligned_cols=286 Identities=16% Similarity=0.199 Sum_probs=170.4
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCC--CChhHHHHHHHHHhhChhhHHHhhhhcccCCCcccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNT--LGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEI 451 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~--L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~i 451 (999)
.++.|++.+|.. ...+...+..+++|+.|+++++. +.......+...+..+++|+.+. .+.. ..
T Consensus 212 ~L~~L~L~~~~~-------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls---~~~~----~~ 277 (594)
T 2p1m_B 212 NLKSLKLNRAVP-------LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS---GFWD----AV 277 (594)
T ss_dssp TCCEEECCTTSC-------HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE---CCBT----CC
T ss_pred CCcEEecCCCCc-------HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc---CCcc----cc
Confidence 466666666521 12255556666666666666553 44444444444555444443210 0111 11
Q ss_pred chHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCC
Q psy18075 452 PDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKE 531 (999)
Q Consensus 452 p~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~ 531 (999)
...+.. +...+++|++|+|++|.+++.++..+ + ..|++|++|+|++| +++.+...++.. +
T Consensus 278 ~~~l~~----~~~~~~~L~~L~L~~~~l~~~~l~~~---~--~~~~~L~~L~l~~~-~~~~~l~~l~~~---~------- 337 (594)
T 2p1m_B 278 PAYLPA----VYSVCSRLTTLNLSYATVQSYDLVKL---L--CQCPKLQRLWVLDY-IEDAGLEVLAST---C------- 337 (594)
T ss_dssp GGGGGG----GHHHHTTCCEEECTTCCCCHHHHHHH---H--TTCTTCCEEEEEGG-GHHHHHHHHHHH---C-------
T ss_pred hhhHHH----HHHhhCCCCEEEccCCCCCHHHHHHH---H--hcCCCcCEEeCcCc-cCHHHHHHHHHh---C-------
Confidence 111111 11235789999999999876654433 2 24678999999988 666555555443 2
Q ss_pred CCCCCccEEEc---------cCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeecc--C
Q psy18075 532 GSPLALKVFIA---------GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN--D 600 (999)
Q Consensus 532 g~~~sLk~L~L---------s~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS--~ 600 (999)
++|+.|++ +.+.+++.++..++. .+++|++|.+.+|.+++.++..++. .+++|+.|+|+ +
T Consensus 338 ---~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~---~~~~L~~L~~~~~~l~~~~~~~l~~---~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 338 ---KDLRELRVFPSEPFVMEPNVALTEQGLVSVSM---GCPKLESVLYFCRQMTNAALITIAR---NRPNMTRFRLCIIE 408 (594)
T ss_dssp ---TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH---HCTTCCEEEEEESCCCHHHHHHHHH---HCTTCCEEEEEESS
T ss_pred ---CCCCEEEEecCcccccccCCCCCHHHHHHHHH---hchhHHHHHHhcCCcCHHHHHHHHh---hCCCcceeEeeccc
Confidence 34888887 345677776665543 3677888877777887766554443 36778888887 3
Q ss_pred ----CCCC----cCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhc
Q psy18075 601 ----NTIT----YKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 672 (999)
Q Consensus 601 ----N~Ls----d~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~ 672 (999)
|.++ +.|+..+ +..+++|+.|+|++ .+++.++..++. .+++|+.|+|++|.+++.|...++ .
T Consensus 409 ~~~~~~l~~~~~~~~~~~l---~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~---~ 478 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAI---VEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVL---S 478 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHH---HHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHH---H
T ss_pred CCCcccccCCchhhHHHHH---HhhCCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHH---h
Confidence 5555 3333322 34566777777766 666666555554 246777777777777766554443 3
Q ss_pred cCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 673 NKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 673 ~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
.+++|+.|+|++|.+++.+... .+..+++|+.|+++++..
T Consensus 479 ~~~~L~~L~L~~n~~~~~~~~~---~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPFGDKALLA---NASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCSCCHHHHHH---TGGGGGGSSEEEEESSCC
T ss_pred cCCCcCEEECcCCCCcHHHHHH---HHHhCCCCCEEeeeCCCC
Confidence 4677777777777776654332 334566777777777654
No 22
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.69 E-value=8.7e-18 Score=172.86 Aligned_cols=138 Identities=22% Similarity=0.179 Sum_probs=99.1
Q ss_pred CccEEEccCC-CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 536 ALKVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 536 sLk~L~Ls~N-~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
+|++|+|++| .|++.|+..++.++..+++|++|+|++|.|++.|+..|+.++..+++|++|+|++|.|++.|+..++.+
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 3677777776 677777777777776667777777777777777777777777777777777777777777777777777
Q ss_pred ccCCCCCcEEEc--CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCC
Q psy18075 615 LSKLPSLAILNL--GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 675 (999)
Q Consensus 615 L~~l~sL~~LdL--s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~ 675 (999)
+..+++|++|+| ++|.|++.|+..|+.++..+++|++|+|++|.|++.|+ ++.++..+.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~--i~~~L~~N~ 177 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNN 177 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHH--HHHHHHHHH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHH--HHHHHHhhH
Confidence 777777777777 66777777777777777777778888888777776653 555555443
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=6e-19 Score=195.59 Aligned_cols=250 Identities=17% Similarity=0.152 Sum_probs=183.8
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccC-CCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG-NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~-N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
+++.|+++++.+.- ...++..+..+++|++|+|++ |.+.. .+|
T Consensus 51 ~l~~L~L~~~~l~~-----~~~~~~~l~~l~~L~~L~L~~~n~l~~-------------------------------~~p 94 (313)
T 1ogq_A 51 RVNNLDLSGLNLPK-----PYPIPSSLANLPYLNFLYIGGINNLVG-------------------------------PIP 94 (313)
T ss_dssp CEEEEEEECCCCSS-----CEECCGGGGGCTTCSEEEEEEETTEES-------------------------------CCC
T ss_pred eEEEEECCCCCccC-----CcccChhHhCCCCCCeeeCCCCCcccc-------------------------------cCC
Confidence 68899999998831 002345688899999999995 76543 123
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
..+. .+++|++|+|++|.++......+. .+++|++|+|++|.|+..... .+.
T Consensus 95 ~~l~--------~l~~L~~L~Ls~n~l~~~~p~~~~------~l~~L~~L~Ls~N~l~~~~p~----~~~---------- 146 (313)
T 1ogq_A 95 PAIA--------KLTQLHYLYITHTNVSGAIPDFLS------QIKTLVTLDFSYNALSGTLPP----SIS---------- 146 (313)
T ss_dssp GGGG--------GCTTCSEEEEEEECCEEECCGGGG------GCTTCCEEECCSSEEESCCCG----GGG----------
T ss_pred hhHh--------cCCCCCEEECcCCeeCCcCCHHHh------CCCCCCEEeCCCCccCCcCCh----HHh----------
Confidence 2222 356899999999999744433342 347999999999998732222 222
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcc-cccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLK-TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~-sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
..++|++|++++|+++.. ++..+..++ +|++|+|++|.++.. ++..+..++ |+.|+|++|.+.. .+
T Consensus 147 ~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~----~~~~~~~l~-L~~L~Ls~N~l~~----~~ 213 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGK----IPPTFANLN-LAFVDLSRNMLEG----DA 213 (313)
T ss_dssp GCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEE----CCGGGGGCC-CSEEECCSSEEEE----CC
T ss_pred cCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeecc----CChHHhCCc-ccEEECcCCcccC----cC
Confidence 235699999999999743 334566676 999999999999854 445555565 9999999999875 35
Q ss_pred cccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
+..+..+++|+.|+|++|.++... ..+...++|++|+|++|.|+.. ++..+..+++|++|+|++|.++..
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~- 283 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDL-----GKVGLSKNLNGLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFNNLCGE- 283 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBG-----GGCCCCTTCCEEECCSSCCEEC----CCGGGGGCTTCCEEECCSSEEEEE-
T ss_pred CHHHhcCCCCCEEECCCCceeeec-----CcccccCCCCEEECcCCcccCc----CChHHhcCcCCCEEECcCCccccc-
Confidence 667778999999999999987321 2266779999999999999752 456678899999999999998753
Q ss_pred HHHHHHHHhcCCCCCEEeCCCCC
Q psy18075 692 VEEMEKLMKSFGMAAALVLEDDE 714 (999)
Q Consensus 692 ~~~L~~~L~~l~~L~~L~Ls~N~ 714 (999)
++.. ..+++|+.+++++|.
T Consensus 284 ---ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 284 ---IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ---CCCS-TTGGGSCGGGTCSSS
T ss_pred ---CCCC-ccccccChHHhcCCC
Confidence 2222 567788888998886
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=1.9e-17 Score=183.94 Aligned_cols=275 Identities=19% Similarity=0.211 Sum_probs=173.0
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+.... ...+..+++|++|+|++|.+....... +..+++|+.+.. ..+++. .+|.
T Consensus 53 ~l~~L~L~~n~i~~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L---s~n~l~-~l~~ 117 (330)
T 1xku_A 53 DTALLDLQNNKITEIK-------DGDFKNLKNLHTLILINNKISKISPGA----FAPLVKLERLYL---SKNQLK-ELPE 117 (330)
T ss_dssp TCCEEECCSSCCCCBC-------TTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEEC---CSSCCS-BCCS
T ss_pred CCeEEECCCCcCCEeC-------hhhhccCCCCCEEECCCCcCCeeCHHH----hcCCCCCCEEEC---CCCcCC-ccCh
Confidence 6778899998884321 124677889999999999887643332 233444433222 222222 2332
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+ .++|++|+|++|.++......+. .+++|+.|+|++|.++..+.. ...+..
T Consensus 118 ~~----------~~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~--~~~~~~---------- 169 (330)
T 1xku_A 118 KM----------PKTLQELRVHENEITKVRKSVFN------GLNQMIVVELGTNPLKSSGIE--NGAFQG---------- 169 (330)
T ss_dssp SC----------CTTCCEEECCSSCCCBBCHHHHT------TCTTCCEEECCSSCCCGGGBC--TTGGGG----------
T ss_pred hh----------cccccEEECCCCcccccCHhHhc------CCccccEEECCCCcCCccCcC--hhhccC----------
Confidence 11 25788888888888776655552 346888888888887643221 112222
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
.++|+.|++++|+++.-. ..+ .++|++|+|++|.|+... +..+..+++|+.|+|++|.++.. ...
T Consensus 170 l~~L~~L~l~~n~l~~l~-----~~~--~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~ 234 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIP-----QGL--PPSLTELHLDGNKITKVD----AASLKGLNNLAKLGLSFNSISAV----DNG 234 (330)
T ss_dssp CTTCCEEECCSSCCCSCC-----SSC--CTTCSEEECTTSCCCEEC----TGGGTTCTTCCEEECCSSCCCEE----CTT
T ss_pred CCCcCEEECCCCccccCC-----ccc--cccCCEEECCCCcCCccC----HHHhcCCCCCCEEECCCCcCcee----Chh
Confidence 356888888888877421 111 267888888888887642 34556678888888888888742 223
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhh--ccCCCcCEEEccCCCCChhc
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM--KNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L--~~~~sL~~LdLs~N~Is~eg 691 (999)
.+..+++|+.|+|++|.++. ++..+..+++|+.|+|++|+|+..+...+.... ...+.|+.|++.+|++...+
T Consensus 235 ~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 235 SLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp TGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred hccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 45567888888888888762 445566778888888888888876544432211 12467888888888876532
Q ss_pred HHHHHHHHhcCCCCCEEeCCCC
Q psy18075 692 VEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 692 ~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
. .+..+..+..++.+++++|
T Consensus 310 i--~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 310 I--QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp S--CGGGGTTCCCGGGEEC---
T ss_pred c--CccccccccceeEEEeccc
Confidence 1 2345677788888888776
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.69 E-value=4.3e-18 Score=204.05 Aligned_cols=283 Identities=18% Similarity=0.207 Sum_probs=191.9
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+. .++..+..+++|++|+|++|.+....... +..+++|+.+ ++..+.+...+|.
T Consensus 279 ~L~~L~l~~n~l~--------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L---~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 279 GLQELDLTATHLS--------ELPSGLVGLSTLKKLVLSANKFENLCQIS----ASNFPSLTHL---SIKGNTKRLELGT 343 (606)
T ss_dssp TCSEEECTTSCCS--------CCCSSCCSCTTCCEEECTTCCCSBGGGGC----GGGCTTCSEE---ECCSCSSCCBCCS
T ss_pred CCCEEeccCCccC--------CCChhhcccccCCEEECccCCcCcCchhh----hhccCcCCEE---ECCCCCcccccch
Confidence 5777888888773 23344667788888888888877543322 2334444332 2222222223332
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCcc--HHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIG--VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKE 531 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~g--v~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~ 531 (999)
. .+..+++|++|+|++|.+.... ...+ ..+++|++|+|++|.++...... +
T Consensus 344 ~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~--------------~ 396 (606)
T 3t6q_A 344 G-------CLENLENLRELDLSHDDIETSDCCNLQL------RNLSHLQSLNLSYNEPLSLKTEA--------------F 396 (606)
T ss_dssp S-------TTTTCTTCCEEECCSSCCCEEEESTTTT------TTCTTCCEEECCSCSCEEECTTT--------------T
T ss_pred h-------hhhccCcCCEEECCCCccccccCcchhc------ccCCCCCEEECCCCcCCcCCHHH--------------h
Confidence 1 1234678899999999886554 2222 23568999999998876332211 2
Q ss_pred CCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccc
Q psy18075 532 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 532 g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
+.+++|+.|++++|++..... ...+..+++|++|+|++|.++.. .+..+..+++|+.|+|++|.+.+... ..
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~-~~ 468 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDA---QSPFQNLHLLKVLNLSHSLLDIS----SEQLFDGLPALQHLNLQGNHFPKGNI-QK 468 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTT---CCTTTTCTTCCEEECTTCCCBTT----CTTTTTTCTTCCEEECTTCBCGGGEE-CS
T ss_pred cCCccCCeEECCCCcCCCccc---chhhhCcccCCEEECCCCccCCc----CHHHHhCCCCCCEEECCCCCCCcccc-cc
Confidence 234679999999998764321 12356688999999999998764 34456678899999999998874221 12
Q ss_pred cccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
...+..+++|+.|++++|.++... +..+..+++|+.|+|++|+++.. .+..+..++.| +|+|++|.++..
T Consensus 469 ~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L-~L~L~~N~l~~~- 538 (606)
T 3t6q_A 469 TNSLQTLGRLEILVLSFCDLSSID----QHAFTSLKMMNHVDLSHNRLTSS----SIEALSHLKGI-YLNLASNHISII- 538 (606)
T ss_dssp SCGGGGCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCGG----GGGGGTTCCSC-EEECCSSCCCCC-
T ss_pred chhhccCCCccEEECCCCccCccC----hhhhccccCCCEEECCCCccCcC----ChhHhCccccc-EEECcCCccccc-
Confidence 245677889999999999987543 35667789999999999999873 35567788899 999999999863
Q ss_pred HHHHHHHHhcCCCCCEEeCCCCCCCCCC
Q psy18075 692 VEEMEKLMKSFGMAAALVLEDDEGECSD 719 (999)
Q Consensus 692 ~~~L~~~L~~l~~L~~L~Ls~N~~e~ed 719 (999)
.+..+..+++|+.|++++|....+.
T Consensus 539 ---~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 539 ---LPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp ---CGGGHHHHHTSSEEECTTCCEECSG
T ss_pred ---CHhhcccCCCCCEEeCCCCCccccC
Confidence 2344566788999999998776543
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=186.97 Aligned_cols=259 Identities=17% Similarity=0.164 Sum_probs=135.3
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+.... ...+..+++|++|+|++|.|.......+ .
T Consensus 53 ~L~~L~l~~n~i~~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~------------------------ 97 (353)
T 2z80_A 53 AVKSLDLSNNRITYIS-------NSDLQRCVNLQALVLTSNGINTIEEDSF----S------------------------ 97 (353)
T ss_dssp TCCEEECTTSCCCEEC-------TTTTTTCTTCCEEECTTSCCCEECTTTT----T------------------------
T ss_pred cCcEEECCCCcCcccC-------HHHhccCCCCCEEECCCCccCccCHhhc----C------------------------
Confidence 6788999998884221 1246778899999999998875221111 1
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+++|++|+|++|.|+......+ ..+++|++|+|++|.++..... ..++.
T Consensus 98 -----------~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~l~~~-------------~~~~~ 147 (353)
T 2z80_A 98 -----------SLGSLEHLDLSYNYLSNLSSSWF------KPLSSLTFLNLLGNPYKTLGET-------------SLFSH 147 (353)
T ss_dssp -----------TCTTCCEEECCSSCCSSCCHHHH------TTCTTCSEEECTTCCCSSSCSS-------------CSCTT
T ss_pred -----------CCCCCCEEECCCCcCCcCCHhHh------CCCccCCEEECCCCCCcccCch-------------hhhcc
Confidence 23456666666666655444333 1234666666666665421110 01122
Q ss_pred CCCccEEEccCCC-CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 534 PLALKVFIAGRNR-LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 534 ~~sLk~L~Ls~N~-L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
.++|++|++++|+ ++... ...+..+++|++|++++|.++.. .+..+..+++|++|+|++|.++. ++
T Consensus 148 l~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~-----~~ 214 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTKIQ----RKDFAGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQHIL-----LL 214 (353)
T ss_dssp CTTCCEEEEEESSSCCEEC----TTTTTTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSCSTT-----HH
T ss_pred CCCCcEEECCCCccccccC----HHHccCCCCCCEEECCCCCcCcc----CHHHHhccccCCeecCCCCcccc-----ch
Confidence 3446666666652 43221 12234455666666666665543 23344445566666666665542 22
Q ss_pred c-cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 613 Q-ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 613 ~-aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
. .+..+++|+.|++++|.++......+.. ...+..++.++|+++.+++.+...++..+..+++|+.|+|++|.|+.
T Consensus 215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-- 291 (353)
T 2z80_A 215 EIFVDVTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-- 291 (353)
T ss_dssp HHHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC--
T ss_pred hhhhhhcccccEEECCCCcccccccccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc--
Confidence 1 1223455666666666655443322222 12335555666666666655555555555666666666666666553
Q ss_pred HHHHHHH-HhcCCCCCEEeCCCCCCC
Q psy18075 692 VEEMEKL-MKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 692 ~~~L~~~-L~~l~~L~~L~Ls~N~~e 716 (999)
++.. +..+++|+.|++++|.-.
T Consensus 292 ---i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 292 ---VPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ---CCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---cCHHHHhcCCCCCEEEeeCCCcc
Confidence 2222 345566666666665443
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=194.17 Aligned_cols=276 Identities=20% Similarity=0.234 Sum_probs=141.9
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+.... ...|..+++|++|+|++|.|....... +..+++|+.+ ++..+++. .+|.
T Consensus 33 ~l~~L~L~~n~l~~~~-------~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L---~L~~n~l~-~~~~ 97 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLN-------QDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLRTL---GLRSNRLK-LIPL 97 (477)
T ss_dssp TCSEEECCSSCCCEEC-------TTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEE---ECCSSCCC-SCCT
T ss_pred CCcEEECCCCccceEC-------HhHccCCCCCCEEECCCCccCEeChhh----hhCCccCCEE---ECCCCcCC-ccCc
Confidence 4566667766663211 223556666777777777665533222 2233343322 11112221 1121
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
..+..+++|++|+|++|.+.......+ ..+++|++|+|++|.++...... ++.
T Consensus 98 -------~~~~~l~~L~~L~Ls~n~i~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~--------------~~~ 150 (477)
T 2id5_A 98 -------GVFTGLSNLTKLDISENKIVILLDYMF------QDLYNLKSLEVGDNDLVYISHRA--------------FSG 150 (477)
T ss_dssp -------TSSTTCTTCCEEECTTSCCCEECTTTT------TTCTTCCEEEECCTTCCEECTTS--------------STT
T ss_pred -------ccccCCCCCCEEECCCCccccCChhHc------cccccCCEEECCCCccceeChhh--------------ccC
Confidence 112234567777777777654433333 23456777777777665322211 222
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeecc--------------
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN-------------- 599 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS-------------- 599 (999)
+++|+.|+|++|+++... ...+..+++|+.|+|++|.++.... ..+..+++|+.|+|+
T Consensus 151 l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 222 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIP----TEALSHLHGLIVLRLRHLNINAIRD----YSFKRLYRLKVLEISHWPYLDTMTPNCLY 222 (477)
T ss_dssp CTTCCEEEEESCCCSSCC----HHHHTTCTTCCEEEEESCCCCEECT----TCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred CCCCCEEECCCCcCcccC----hhHhcccCCCcEEeCCCCcCcEeCh----hhcccCcccceeeCCCCccccccCccccc
Confidence 345777777777666432 2334556666666666666654321 223334445555554
Q ss_pred ----------CCCCCcCCccccc-ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHH
Q psy18075 600 ----------DNTITYKGAIPLG-QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV 668 (999)
Q Consensus 600 ----------~N~Lsd~G~~~L~-~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~ 668 (999)
+|.++. ++ ..+..+++|+.|+|++|.++... ...+..+++|+.|+|++|.|+... .
T Consensus 223 ~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~ 289 (477)
T 2id5_A 223 GLNLTSLSITHCNLTA-----VPYLAVRHLVYLRFLNLSYNPISTIE----GSMLHELLRLQEIQLVGGQLAVVE----P 289 (477)
T ss_dssp TCCCSEEEEESSCCCS-----CCHHHHTTCTTCCEEECCSSCCCEEC----TTSCTTCTTCCEEECCSSCCSEEC----T
T ss_pred CccccEEECcCCcccc-----cCHHHhcCccccCeeECCCCcCCccC----hhhccccccCCEEECCCCccceEC----H
Confidence 444442 22 23445566666666666665332 233445566666666666665421 2
Q ss_pred HhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 669 KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 669 ~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
..+..+++|+.|+|++|.|+... ...+..+++|+.|++++|.-.
T Consensus 290 ~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQLTTLE----ESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTBTTCTTCCEEECCSSCCSCCC----GGGBSCGGGCCEEECCSSCEE
T ss_pred HHhcCcccCCEEECCCCcCceeC----HhHcCCCcccCEEEccCCCcc
Confidence 34556666777777777665521 123455566777777766543
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.69 E-value=4.7e-18 Score=198.12 Aligned_cols=185 Identities=18% Similarity=0.117 Sum_probs=125.7
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|++|+|++|.++......+ ..+++|+.|+|++|.++.... ..++...+|+.|++++|
T Consensus 151 l~~L~~L~l~~n~l~~~~~~~l------~~l~~L~~L~l~~n~i~~~~~--------------~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIPTEAL------SHLHGLIVLRLRHLNINAIRD--------------YSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CTTCCEEEEESCCCSSCCHHHH------TTCTTCCEEEEESCCCCEECT--------------TCSCSCTTCCEEEEECC
T ss_pred CCCCCEEECCCCcCcccChhHh------cccCCCcEEeCCCCcCcEeCh--------------hhcccCcccceeeCCCC
Confidence 3455555555555554443333 123455566665555542211 12334466888888877
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
.+.... +..+....+|++|+|++|.|+... ...+..+++|+.|+|++|.+... ....+..+++|+.|+
T Consensus 211 ~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~ 278 (477)
T 2id5_A 211 PYLDTM----TPNCLYGLNLTSLSITHCNLTAVP----YLAVRHLVYLRFLNLSYNPISTI----EGSMLHELLRLQEIQ 278 (477)
T ss_dssp TTCCEE----CTTTTTTCCCSEEEEESSCCCSCC----HHHHTTCTTCCEEECCSSCCCEE----CTTSCTTCTTCCEEE
T ss_pred cccccc----CcccccCccccEEECcCCcccccC----HHHhcCccccCeeECCCCcCCcc----ChhhccccccCCEEE
Confidence 654321 112223458899999999888542 24577789999999999999852 234567789999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
|++|.++... +.++..+++|+.|+|++|.|+... ...+..+++|+.|+|++|++..+
T Consensus 279 L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 279 LVGGQLAVVE----PYAFRGLNYLRVLNVSGNQLTTLE----ESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CCSSCCSEEC----TTTBTTCTTCCEEECCSSCCSCCC----GGGBSCGGGCCEEECCSSCEECS
T ss_pred CCCCccceEC----HHHhcCcccCCEEECCCCcCceeC----HhHcCCCcccCEEEccCCCccCc
Confidence 9999998543 456778899999999999998743 23456789999999999998654
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=2.6e-17 Score=198.20 Aligned_cols=210 Identities=16% Similarity=0.195 Sum_probs=124.5
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhc---cCCcCCCCCCCccEEEc
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCY---ESSKKEGSPLALKVFIA 542 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~---~~s~~~g~~~sLk~L~L 542 (999)
+++|+.|+|++|.|+......+ ..+++|++|+|++|.|+......+... .... +.....+.+.+|+.|++
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~L~~N~l~~~~~~~l~~L-~~L~l~~n~l~~l~~~~~L~~L~l 218 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTF------QATTSLQNLQLSSNRLTHVDLSLIPSL-FHANVSYNLLSTLAIPIAVEELDA 218 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTT------TTCTTCCEEECTTSCCSBCCGGGCTTC-SEEECCSSCCSEEECCTTCSEEEC
T ss_pred CCCCCEEEeeCCcCCCCChhhh------hcCCcCcEEECcCCCCCCcChhhhhhh-hhhhcccCccccccCCchhheeec
Confidence 4556666666666554433222 123456666666665554332221110 0000 00001123455777777
Q ss_pred cCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCc
Q psy18075 543 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 622 (999)
Q Consensus 543 s~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~ 622 (999)
++|.+..... ...++|+.|+|++|.|++. ..+..+++|+.|+|++|.+.. ..+..+..+++|+
T Consensus 219 s~n~l~~~~~-------~~~~~L~~L~L~~n~l~~~------~~l~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~ 281 (597)
T 3oja_B 219 SHNSINVVRG-------PVNVELTILKLQHNNLTDT------AWLLNYPGLVEVDLSYNELEK----IMYHPFVKMQRLE 281 (597)
T ss_dssp CSSCCCEEEC-------SCCSCCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCE----EESGGGTTCSSCC
T ss_pred cCCccccccc-------ccCCCCCEEECCCCCCCCC------hhhccCCCCCEEECCCCccCC----CCHHHhcCccCCC
Confidence 7777653221 1135777888888877753 445667888888888888774 2345666778888
Q ss_pred EEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcC
Q psy18075 623 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 702 (999)
Q Consensus 623 ~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l 702 (999)
.|+|++|.++.. +..+..+++|+.|+|++|.++. ++..+..+++|+.|+|++|.|+... +..+
T Consensus 282 ~L~Ls~N~l~~l-----~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~ 344 (597)
T 3oja_B 282 RLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTLK-------LSTH 344 (597)
T ss_dssp EEECTTSCCCEE-----ECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCCCCC-------CCTT
T ss_pred EEECCCCCCCCC-----CcccccCCCCcEEECCCCCCCc-----cCcccccCCCCCEEECCCCCCCCcC-------hhhc
Confidence 888888887642 3334456788888888888774 3334456778888888888876632 5667
Q ss_pred CCCCEEeCCCCCCC
Q psy18075 703 GMAAALVLEDDEGE 716 (999)
Q Consensus 703 ~~L~~L~Ls~N~~e 716 (999)
+.|+.|++++|...
T Consensus 345 ~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 345 HTLKNLTLSHNDWD 358 (597)
T ss_dssp CCCSEEECCSSCEE
T ss_pred CCCCEEEeeCCCCC
Confidence 78888888887643
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=1.1e-16 Score=177.69 Aligned_cols=247 Identities=22% Similarity=0.236 Sum_probs=181.0
Q ss_pred CCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 373 QDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 373 ~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
|.++.++++++++.... .. -.+.|+.|+|++|.|+.....
T Consensus 31 c~l~~l~~~~~~l~~lp--------~~--~~~~l~~L~L~~n~i~~~~~~------------------------------ 70 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVP--------KD--LPPDTALLDLQNNKITEIKDG------------------------------ 70 (330)
T ss_dssp EETTEEECTTSCCCSCC--------CS--CCTTCCEEECCSSCCCCBCTT------------------------------
T ss_pred CCCeEEEecCCCccccC--------cc--CCCCCeEEECCCCcCCEeChh------------------------------
Confidence 35667888888774221 11 136799999999998752111
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
.+..+++|++|+|++|.++......+. .+++|++|+|++|.|+.....
T Consensus 71 ---------~~~~l~~L~~L~L~~n~l~~~~~~~~~------~l~~L~~L~Ls~n~l~~l~~~----------------- 118 (330)
T 1xku_A 71 ---------DFKNLKNLHTLILINNKISKISPGAFA------PLVKLERLYLSKNQLKELPEK----------------- 118 (330)
T ss_dssp ---------TTTTCTTCCEEECCSSCCCCBCTTTTT------TCTTCCEEECCSSCCSBCCSS-----------------
T ss_pred ---------hhccCCCCCEEECCCCcCCeeCHHHhc------CCCCCCEEECCCCcCCccChh-----------------
Confidence 012356899999999999876544442 357899999999988632211
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
...+|++|++++|+++... ...+..+++|+.|+|++|.++..+. ....+..+++|+.|++++|.++. ++
T Consensus 119 ~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~-----l~ 187 (330)
T 1xku_A 119 MPKTLQELRVHENEITKVR----KSVFNGLNQMIVVELGTNPLKSSGI--ENGAFQGMKKLSYIRIADTNITT-----IP 187 (330)
T ss_dssp CCTTCCEEECCSSCCCBBC----HHHHTTCTTCCEEECCSSCCCGGGB--CTTGGGGCTTCCEEECCSSCCCS-----CC
T ss_pred hcccccEEECCCCcccccC----HhHhcCCccccEEECCCCcCCccCc--ChhhccCCCCcCEEECCCCcccc-----CC
Confidence 1246999999999988643 3456778999999999999976443 34567788999999999998873 44
Q ss_pred ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcH
Q psy18075 613 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 692 (999)
Q Consensus 613 ~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~ 692 (999)
..+. ++|++|++++|.++... +..+..+++|+.|+|++|.|+... ...+..+++|++|+|++|.++.
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~--- 254 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVD----AASLKGLNNLAKLGLSFNSISAVD----NGSLANTPHLRELHLNNNKLVK--- 254 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEEC----TGGGTTCTTCCEEECCSSCCCEEC----TTTGGGSTTCCEEECCSSCCSS---
T ss_pred cccc--ccCCEEECCCCcCCccC----HHHhcCCCCCCEEECCCCcCceeC----hhhccCCCCCCEEECCCCcCcc---
Confidence 4332 78999999999987553 355677899999999999988643 2356678999999999999884
Q ss_pred HHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 693 EEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 693 ~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
++..+..+++|+.|++++|.-..
T Consensus 255 --lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 255 --VPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp --CCTTTTTCSSCCEEECCSSCCCC
T ss_pred --CChhhccCCCcCEEECCCCcCCc
Confidence 55567888999999999887643
No 31
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=2.3e-17 Score=182.09 Aligned_cols=242 Identities=15% Similarity=0.119 Sum_probs=169.1
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.+..+.+.++.+ ++..+..+...+.. ++|++|+|++|.+.......+.
T Consensus 65 ~l~~l~l~~~~~---~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~---------------------------- 112 (310)
T 4glp_A 65 RVRRLTVGAAQV---PAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPL---------------------------- 112 (310)
T ss_dssp CCCEEEECSCCC---BHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSS----------------------------
T ss_pred ceeEEEEeCCcC---CHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhh----------------------------
Confidence 567888998888 66677777665543 5699999999988642111000
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
....++|++|+|++|.++......-...+ ..+++|++|+|++|+|+..... .++.
T Consensus 113 ---------~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~--~~~~~L~~L~Ls~n~l~~~~~~--------------~~~~ 167 (310)
T 4glp_A 113 ---------EATGLALSSLRLRNVSWATGRSWLAELQQ--WLKPGLKVLSIAQAHSPAFSCE--------------QVRA 167 (310)
T ss_dssp ---------SCCCBCCSSCEEESCCCSSTTSSHHHHHT--TBCSCCCEEEEECCSSCCCCTT--------------SCCC
T ss_pred ---------hccCCCCCEEEeecccccchhhhhHHHHh--hhccCCCEEEeeCCCcchhhHH--------------Hhcc
Confidence 02356899999999999763321111111 2467999999999998643322 2234
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHH-hhhcccCceeeccCCCCCcCCccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA-FEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~a-L~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
+++|++|+|++|++...........+..+++|++|+|++|+|+..+ .++.. +..+++|++|+|++|.+++.. +
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~~l~~L~~L~Ls~N~l~~~~----p 241 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT--GVCAALAAAGVQPHSLDLSHNSLRATV----N 241 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH--HHHHHHHHHTCCCSSEECTTSCCCCCC----C
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH--HHHHHHHhcCCCCCEEECCCCCCCccc----h
Confidence 5779999999999864322211222356889999999999997432 23333 467899999999999998632 3
Q ss_pred ccccCC---CCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 613 QALSKL---PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 613 ~aL~~l---~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
..+..+ ++|++|+|++|.|+. ++..+. ++|+.|+|++|+|+.-. .+..+++|+.|+|++|+|++
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~--~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAGLEQ-----VPKGLP--AKLRVLDLSSNRLNRAP------QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSCCCS-----CCSCCC--SCCSCEECCSCCCCSCC------CTTSCCCCSCEECSSTTTSC
T ss_pred hhHHhccCcCcCCEEECCCCCCCc-----hhhhhc--CCCCEEECCCCcCCCCc------hhhhCCCccEEECcCCCCCC
Confidence 333334 699999999999973 233332 79999999999998631 24678999999999999987
Q ss_pred hc
Q psy18075 690 EG 691 (999)
Q Consensus 690 eg 691 (999)
.|
T Consensus 309 ~g 310 (310)
T 4glp_A 309 PG 310 (310)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 32
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=3.5e-16 Score=173.32 Aligned_cols=194 Identities=17% Similarity=0.197 Sum_probs=128.2
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|++|+|++|.+++.++..+ + ..|++|++|+|++|.++......+ ..+ ++|++|++++|
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~---~--~~~~~L~~L~L~~~~l~~~~~~~l----~~~----------~~L~~L~L~~~ 152 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGI---L--SQCSKLQNLSLEGLRLSDPIVNTL----AKN----------SNLVRLNLSGC 152 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHH---H--TTBCCCSEEECTTCBCCHHHHHHH----TTC----------TTCSEEECTTC
T ss_pred CCCCCEEEccCCCcCHHHHHHH---H--hhCCCCCEEeCcCcccCHHHHHHH----hcC----------CCCCEEECCCC
Confidence 4578888888887765544333 2 235688888888887764443333 222 45888888888
Q ss_pred -CCCchhHHHHHHHHhhcccccccccCCC-ccCchhhhhhhHHhhhcc-cCceeeccCC--CCCcCCcccccccccCCCC
Q psy18075 546 -RLENEGAKMLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENK-NLRHLNLNDN--TITYKGAIPLGQALSKLPS 620 (999)
Q Consensus 546 -~L~d~g~~~L~~~L~~~~sLe~LdLs~N-~It~~g~~~La~aL~~~~-~Lr~LdLS~N--~Lsd~G~~~L~~aL~~l~s 620 (999)
.+++.++ ...+..+++|++|+|++| .+++.+ +...+..++ +|++|+|++| .+++.+ +...+..+++
T Consensus 153 ~~l~~~~l---~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~ 223 (336)
T 2ast_B 153 SGFSEFAL---QTLLSSCSRLDELNLSWCFDFTEKH---VQVAVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPN 223 (336)
T ss_dssp BSCCHHHH---HHHHHHCTTCCEEECCCCTTCCHHH---HHHHHHHSCTTCCEEECCSCGGGSCHHH---HHHHHHHCTT
T ss_pred CCCCHHHH---HHHHhcCCCCCEEcCCCCCCcChHH---HHHHHHhcccCCCEEEeCCCcccCCHHH---HHHHHhhCCC
Confidence 5776543 344556778888888888 787654 344555677 8888888888 455432 3344556778
Q ss_pred CcEEEcCCCC-CCccchHHHHHhccCCCCCCEEEccCC-CCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHH
Q psy18075 621 LAILNLGDCL-LKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 696 (999)
Q Consensus 621 L~~LdLs~N~-L~d~g~~~La~aL~~~~~L~~LdLs~N-~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~ 696 (999)
|+.|++++|. +++.+.. .+..+++|++|+|++| .+.+.+. ..+..+++|+.|++++| ++++++..+.
T Consensus 224 L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~-i~~~~~~~l~ 292 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDCFQ----EFFQLNYLQHLSLSRCYDIIPETL----LELGEIPTLKTLQVFGI-VPDGTLQLLK 292 (336)
T ss_dssp CSEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTS-SCTTCHHHHH
T ss_pred CCEEeCCCCCcCCHHHHH----HHhCCCCCCEeeCCCCCCCCHHHH----HHHhcCCCCCEEeccCc-cCHHHHHHHH
Confidence 8888888887 6655543 4455688888888888 4555443 33456788888888888 7777766655
No 33
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=6.4e-16 Score=184.18 Aligned_cols=303 Identities=17% Similarity=0.158 Sum_probs=157.9
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCC-CCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGN-TLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N-~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
.++.|+++++.+ ++.....+. ..+++|++|+|++| .+++.+...+... +++|+.+... .+.+....+
T Consensus 106 ~L~~L~L~~~~~---~~~~~~~l~---~~~~~L~~L~L~~~~~~~~~~l~~~~~~---~~~L~~L~L~---~~~i~~~~~ 173 (594)
T 2p1m_B 106 WLEEIRLKRMVV---TDDCLELIA---KSFKNFKVLVLSSCEGFSTDGLAAIAAT---CRNLKELDLR---ESDVDDVSG 173 (594)
T ss_dssp TCCEEEEESCBC---CHHHHHHHH---HHCTTCCEEEEESCEEEEHHHHHHHHHH---CTTCCEEECT---TCEEECCCG
T ss_pred CCCeEEeeCcEE---cHHHHHHHH---HhCCCCcEEeCCCcCCCCHHHHHHHHHh---CCCCCEEeCc---CCccCCcch
Confidence 577788888776 555444433 24678888888877 6666655555543 3344322211 111111112
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCC-ccC---------------------
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN-GLG--------------------- 510 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n-~Lt--------------------- 510 (999)
..+.. +...+++|+.|+|++|. +......+..+... |++|++|+|++| .++
T Consensus 174 ~~l~~----~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~--~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 174 HWLSH----FPDTYTSLVSLNISCLA-SEVSFSALERLVTR--CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp GGGGG----SCTTCCCCCEEECTTCC-SCCCHHHHHHHHHH--CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCC
T ss_pred HHHHH----HhhcCCcCcEEEecccC-CcCCHHHHHHHHHh--CCCCcEEecCCCCcHHHHHHHHhcCCcceEccccccc
Confidence 22211 22245567777777765 22222223332221 456777777666 111
Q ss_pred ----chhhhHHHHHHhhhccCCc--------------CCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCC
Q psy18075 511 ----ITGCKLLSKALHDCYESSK--------------KEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 572 (999)
Q Consensus 511 ----~~g~~~La~~L~~~~~~s~--------------~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~ 572 (999)
......+...+..++.... ....+++|++|++++|.+++.+.. ..+..+++|++|+|++
T Consensus 247 ~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~---~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV---KLLCQCPKLQRLWVLD 323 (594)
T ss_dssp CCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHH---HHHTTCTTCCEEEEEG
T ss_pred CccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHH---HHHhcCCCcCEEeCcC
Confidence 1111111112222111000 000235688888888887765433 3344456666666665
Q ss_pred CccCchhhhhhhHHhhhcccCceeec----------------------------------cCCCCCcCCcccccccccCC
Q psy18075 573 NGIYHVGITALSDAFEENKNLRHLNL----------------------------------NDNTITYKGAIPLGQALSKL 618 (999)
Q Consensus 573 N~It~~g~~~La~aL~~~~~Lr~LdL----------------------------------S~N~Lsd~G~~~L~~aL~~l 618 (999)
| +++.++..++. .+++|+.|+| +.|.+++.++..++. .+
T Consensus 324 ~-~~~~~l~~l~~---~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~---~~ 396 (594)
T 2p1m_B 324 Y-IEDAGLEVLAS---TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR---NR 396 (594)
T ss_dssp G-GHHHHHHHHHH---HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH---HC
T ss_pred c-cCHHHHHHHHH---hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh---hC
Confidence 5 44444333322 2444555554 444444333222221 35
Q ss_pred CCCcEEEcC--C----CCCC----ccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCC
Q psy18075 619 PSLAILNLG--D----CLLK----SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 688 (999)
Q Consensus 619 ~sL~~LdLs--~----N~L~----d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is 688 (999)
++|+.|+++ + +.++ +.|+ ...+..+++|+.|+|++ .+++.+...++. .+++|+.|+|++|.++
T Consensus 397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~---~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~ 469 (594)
T 2p1m_B 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGF---GAIVEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDS 469 (594)
T ss_dssp TTCCEEEEEESSTTCCCTTTCCCTHHHH---HHHHHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSS
T ss_pred CCcceeEeecccCCCcccccCCchhhHH---HHHHhhCCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCc
Confidence 566677666 3 4455 2332 23344456777777766 666655444433 3778999999999998
Q ss_pred hhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 689 EEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 689 ~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
+.|...+. ..+++|+.|++++|..
T Consensus 470 ~~~~~~l~---~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 470 DLGMHHVL---SGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHH---HHCTTCCEEEEESCSC
T ss_pred HHHHHHHH---hcCCCcCEEECcCCCC
Confidence 87766553 4588999999999875
No 34
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=3.6e-16 Score=173.27 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=48.0
Q ss_pred ccEEEccCC-CCCchhHHHHHHHHhhcc-cccccccCCC--ccCchhhhhhhHHhhhcccCceeeccCCC-CCcCCcccc
Q psy18075 537 LKVFIAGRN-RLENEGAKMLAAVFKKLK-TLERVEMPQN--GIYHVGITALSDAFEENKNLRHLNLNDNT-ITYKGAIPL 611 (999)
Q Consensus 537 Lk~L~Ls~N-~L~d~g~~~L~~~L~~~~-sLe~LdLs~N--~It~~g~~~La~aL~~~~~Lr~LdLS~N~-Lsd~G~~~L 611 (999)
|++|++++| .+++.++ ...+..++ +|++|+|++| .+++.+ ++..+..+++|+.|+|++|. +++.+..
T Consensus 170 L~~L~l~~~~~l~~~~~---~~~~~~l~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~-- 241 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHV---QVAVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQ-- 241 (336)
T ss_dssp CCEEECCCCTTCCHHHH---HHHHHHSCTTCCEEECCSCGGGSCHHH---HHHHHHHCTTCSEEECTTCTTCCGGGGG--
T ss_pred CCEEcCCCCCCcChHHH---HHHHHhcccCCCEEEeCCCcccCCHHH---HHHHHhhCCCCCEEeCCCCCcCCHHHHH--
Confidence 555555555 4443322 22233344 5555555555 333322 22333344555555555554 3333222
Q ss_pred cccccCCCCCcEEEcCCC-CCCccchHHHHHhccCCCCCCEEEccCCCCCCcch
Q psy18075 612 GQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGG 664 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N-~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~ 664 (999)
.+..+++|+.|++++| .+.+.+. ..+..+++|+.|+|++| +++.+.
T Consensus 242 --~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~-i~~~~~ 288 (336)
T 2ast_B 242 --EFFQLNYLQHLSLSRCYDIIPETL----LELGEIPTLKTLQVFGI-VPDGTL 288 (336)
T ss_dssp --GGGGCTTCCEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTS-SCTTCH
T ss_pred --HHhCCCCCCEeeCCCCCCCCHHHH----HHHhcCCCCCEEeccCc-cCHHHH
Confidence 2223445555555555 2333322 12233455555555555 444433
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.67 E-value=5.9e-16 Score=180.51 Aligned_cols=190 Identities=23% Similarity=0.264 Sum_probs=100.9
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
.+++|+.|+|++|.+..... + ..+++|++|++++|.++.... +. .+++|+.|++++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~--l------~~l~~L~~L~l~~n~l~~~~~------~~----------~l~~L~~L~l~~ 230 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDISV--L------AKLTNLESLIATNNQISDITP------LG----------ILTNLDELSLNG 230 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG--G------GGCTTCSEEECCSSCCCCCGG------GG----------GCTTCCEEECCS
T ss_pred cCCCCCEEECcCCcCCCChh--h------ccCCCCCEEEecCCccccccc------cc----------ccCCCCEEECCC
Confidence 45678888888887765431 1 234677778887777753321 11 123466666666
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~L 624 (999)
|++...+ .+..+++|+.|++++|.++... .+..+++|+.|+|++|.+... .. +..+++|+.|
T Consensus 231 n~l~~~~------~l~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L 292 (466)
T 1o6v_A 231 NQLKDIG------TLASLTNLTDLDLANNQISNLA------PLSGLTKLTELKLGANQISNI-----SP-LAGLTALTNL 292 (466)
T ss_dssp SCCCCCG------GGGGCTTCSEEECCSSCCCCCG------GGTTCTTCSEEECCSSCCCCC-----GG-GTTCTTCSEE
T ss_pred CCcccch------hhhcCCCCCEEECCCCccccch------hhhcCCCCCEEECCCCccCcc-----cc-ccCCCccCeE
Confidence 6665431 2444566666666666665421 144555666666666655531 11 3445555666
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~ 704 (999)
++++|.+++... +..+++|+.|+|++|++++... +..+++|+.|++++|.++.. ..+..+++
T Consensus 293 ~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~------~~l~~l~~ 354 (466)
T 1o6v_A 293 ELNENQLEDISP------ISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSDV------SSLANLTN 354 (466)
T ss_dssp ECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC------GGGTTCTT
T ss_pred EcCCCcccCchh------hcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCCc------hhhccCCC
Confidence 665555543211 3344555555555555554221 34455555555555555442 23444555
Q ss_pred CCEEeCCCCC
Q psy18075 705 AAALVLEDDE 714 (999)
Q Consensus 705 L~~L~Ls~N~ 714 (999)
|+.|++++|.
T Consensus 355 L~~L~l~~n~ 364 (466)
T 1o6v_A 355 INWLSAGHNQ 364 (466)
T ss_dssp CCEEECCSSC
T ss_pred CCEEeCCCCc
Confidence 5555555543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=4.6e-17 Score=185.00 Aligned_cols=272 Identities=17% Similarity=0.154 Sum_probs=168.3
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.+++.++.+.... ...+..+++|++|+|++|.+....... +..+++|+.+ ++..+++....|.
T Consensus 46 ~l~~l~l~~~~l~~l~-------~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L---~L~~n~l~~~~~~ 111 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLP-------AALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKL---YMGFNAIRYLPPH 111 (390)
T ss_dssp CCSEEEEESCEESEEC-------THHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEE---ECCSSCCCCCCTT
T ss_pred CceEEEecCCchhhCC-------hhHhcccccCcEEECCCCcccccChhh----ccCCCCcCEE---ECCCCCCCcCCHH
Confidence 5677888888773211 123567788899999888887643322 2234444332 2222333333232
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+ ..+++|++|+|++|.++......+ ..+++|++|+|++|.++...... ++.
T Consensus 112 ~~--------~~l~~L~~L~L~~n~l~~l~~~~~------~~l~~L~~L~L~~n~l~~~~~~~--------------~~~ 163 (390)
T 3o6n_A 112 VF--------QNVPLLTVLVLERNDLSSLPRGIF------HNTPKLTTLSMSNNNLERIEDDT--------------FQA 163 (390)
T ss_dssp TT--------TTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCSSCCCBCCTTT--------------TSS
T ss_pred Hh--------cCCCCCCEEECCCCccCcCCHHHh------cCCCCCcEEECCCCccCccChhh--------------ccC
Confidence 22 345789999999999976554333 23468999999999886432211 223
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhh--------------hhhHHhhhcccCceeecc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT--------------ALSDAFEENKNLRHLNLN 599 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~--------------~La~aL~~~~~Lr~LdLS 599 (999)
.++|++|++++|+++..+ +..+++|+.|++++|.++..+.. .++. ...++|+.|+|+
T Consensus 164 l~~L~~L~l~~n~l~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~ 234 (390)
T 3o6n_A 164 TTSLQNLQLSSNRLTHVD-------LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQ 234 (390)
T ss_dssp CTTCCEEECCSSCCSBCC-------GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECC
T ss_pred CCCCCEEECCCCcCCccc-------cccccccceeecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECC
Confidence 466888888888887643 23355565555555555432100 0000 113467777777
Q ss_pred CCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCE
Q psy18075 600 DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 679 (999)
Q Consensus 600 ~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~ 679 (999)
+|.+++. ..+..+++|++|++++|.++... +..+..+++|+.|+|++|.++.. ...+..+++|+.
T Consensus 235 ~n~l~~~------~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~l~~L~~ 299 (390)
T 3o6n_A 235 HNNLTDT------AWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKV 299 (390)
T ss_dssp SSCCCCC------GGGGGCTTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECCSSCCCEE-----ECSSSCCTTCCE
T ss_pred CCCCccc------HHHcCCCCccEEECCCCcCCCcC----hhHccccccCCEEECCCCcCccc-----CcccCCCCCCCE
Confidence 7777642 34556778888888888876432 34566678888888888887752 223356778888
Q ss_pred EEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 680 INVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 680 LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
|+|++|.++. +...+..+++|+.|++++|.-.
T Consensus 300 L~L~~n~l~~-----~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 300 LDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp EECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCC
T ss_pred EECCCCccee-----cCccccccCcCCEEECCCCccc
Confidence 8888888875 3334556778888888887653
No 37
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.66 E-value=9.1e-17 Score=178.08 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=144.6
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
.+++|++|+|++|.|+..+ .+++|++|++++|.|+..... ..++|+.|++++
T Consensus 78 ~l~~L~~L~Ls~n~l~~l~-----------~~~~L~~L~l~~n~l~~~~~~-----------------~~~~L~~L~l~~ 129 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQELL-----------VGPSIETLHAANNNISRVSCS-----------------RGQGKKNIYLAN 129 (317)
T ss_dssp TCTTCCEEECCSSEEEEEE-----------ECTTCCEEECCSSCCSEEEEC-----------------CCSSCEEEECCS
T ss_pred hcCCCCEEECcCCcccccc-----------CCCCcCEEECCCCccCCcCcc-----------------ccCCCCEEECCC
Confidence 3568999999999886543 235899999999988743321 235699999999
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~L 624 (999)
|+++.... ..+..+++|++|+|++|.|+......+. ..+++|++|+|++|.++. +. ....+++|+.|
T Consensus 130 N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~~l~~L~~L~L~~N~l~~-----~~-~~~~l~~L~~L 196 (317)
T 3o53_A 130 NKITMLRD----LDEGCRSRVQYLDLKLNEIDTVNFAELA---ASSDTLEHLNLQYNFIYD-----VK-GQVVFAKLKTL 196 (317)
T ss_dssp SCCCSGGG----BCTGGGSSEEEEECTTSCCCEEEGGGGG---GGTTTCCEEECTTSCCCE-----EE-CCCCCTTCCEE
T ss_pred CCCCCccc----hhhhccCCCCEEECCCCCCCcccHHHHh---hccCcCCEEECCCCcCcc-----cc-cccccccCCEE
Confidence 99986432 2455678999999999999875433332 356889999999999874 22 23347899999
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~ 704 (999)
+|++|.++... ..+..+++|+.|+|++|.|+. ++..+..+++|+.|+|++|++... .+...+..++.
T Consensus 197 ~Ls~N~l~~l~-----~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~ 263 (317)
T 3o53_A 197 DLSSNKLAFMG-----PEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQR 263 (317)
T ss_dssp ECCSSCCCEEC-----GGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECTTCCCBHH---HHHHHHHTCHH
T ss_pred ECCCCcCCcch-----hhhcccCcccEEECcCCcccc-----hhhHhhcCCCCCEEEccCCCccCc---CHHHHHhcccc
Confidence 99999997432 336667999999999999984 445677889999999999999732 46677788888
Q ss_pred CCEEeCCC
Q psy18075 705 AAALVLED 712 (999)
Q Consensus 705 L~~L~Ls~ 712 (999)
|+.+++.+
T Consensus 264 L~~l~l~~ 271 (317)
T 3o53_A 264 VQTVAKQT 271 (317)
T ss_dssp HHHHHHHH
T ss_pred ceEEECCC
Confidence 88887763
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.66 E-value=2e-17 Score=200.99 Aligned_cols=287 Identities=14% Similarity=0.113 Sum_probs=156.4
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCC-CCh-hHHHHHHHH--HhhChhhHHHhhhhcccCCCcc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNT-LGV-NAAKAIADA--LSKHEHFKRALWKDMFTGRMKT 449 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~-L~~-~~~~~L~~~--L~~~~~Lk~ll~~nl~t~rl~~ 449 (999)
.++.|++++|.+.. .++..+..+++|++|+|++|. ++. ..+..++.. +..+++|+. .++..+++.
T Consensus 250 ~L~~L~L~~n~l~~-------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~---L~L~~n~l~- 318 (636)
T 4eco_A 250 DLTDVEVYNCPNLT-------KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI---IYIGYNNLK- 318 (636)
T ss_dssp TCCEEEEECCTTCS-------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE---EECCSSCCS-
T ss_pred CCCEEEecCCcCCc-------cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE---EECCCCcCC-
Confidence 68889999998732 345667888999999999998 887 555555542 111233332 233344444
Q ss_pred ccch--HHHHhhhhhhccCCcccEEEecCCCCC-CccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhcc
Q psy18075 450 EIPD--ALRYLGNGLQQAGARLVELDLSDNAFG-PIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526 (999)
Q Consensus 450 ~ip~--~l~~L~~~L~~~~~sL~~LdLS~N~L~-~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~ 526 (999)
.+|. .+.. +++|+.|+|++|.+. ... .+ ..+++|++|+|++|.++. +...+..+..
T Consensus 319 ~ip~~~~l~~--------l~~L~~L~L~~N~l~g~ip--~~------~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~ 377 (636)
T 4eco_A 319 TFPVETSLQK--------MKKLGMLECLYNQLEGKLP--AF------GSEIKLASLNLAYNQITE-----IPANFCGFTE 377 (636)
T ss_dssp SCCCHHHHTT--------CTTCCEEECCSCCCEEECC--CC------EEEEEESEEECCSSEEEE-----CCTTSEEECT
T ss_pred ccCchhhhcc--------CCCCCEEeCcCCcCccchh--hh------CCCCCCCEEECCCCcccc-----ccHhhhhhcc
Confidence 5665 4433 457777888877775 332 22 122456666666665541 1111111100
Q ss_pred --------------CCcCCCCC--CCccEEEccCCCCCchhHHHHHHHHh-------hcccccccccCCCccCchhhhhh
Q psy18075 527 --------------SSKKEGSP--LALKVFIAGRNRLENEGAKMLAAVFK-------KLKTLERVEMPQNGIYHVGITAL 583 (999)
Q Consensus 527 --------------~s~~~g~~--~sLk~L~Ls~N~L~d~g~~~L~~~L~-------~~~sLe~LdLs~N~It~~g~~~L 583 (999)
++..++.. .+|+.|++++|++..... ..+. .+++|+.|+|++|.|+. +
T Consensus 378 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-----l 448 (636)
T 4eco_A 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG----KNFDPLDPTPFKGINVSSINLSNNQISK-----F 448 (636)
T ss_dssp TCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT----CSSCTTCSSCCCCCCEEEEECCSSCCCS-----C
T ss_pred cCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcch----hhhcccccccccCCCCCEEECcCCccCc-----C
Confidence 01111111 256666666666654221 1222 34466667777776663 2
Q ss_pred hH-HhhhcccCceeeccCCCCCcCCcccccc---cccCCCCCcEEEcCCCCCCccchHHHHHhcc--CCCCCCEEEccCC
Q psy18075 584 SD-AFEENKNLRHLNLNDNTITYKGAIPLGQ---ALSKLPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCN 657 (999)
Q Consensus 584 a~-aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~---aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~--~~~~L~~LdLs~N 657 (999)
+. .+..+++|+.|+|++|.++.-....+.. .+..+++|+.|+|++|.++. ++..+. .+++|+.|+|++|
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-----CCGGGSTTTCTTCCEEECCSS
T ss_pred CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-----cChhhhhccCCCcCEEECCCC
Confidence 22 2334667777777777766211111100 01222367777777777762 344444 5677777777777
Q ss_pred CCCCcchhhHHHhhccCCCcCEEEccC------CCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 658 EISVQGGLDLVKAMKNKTKLKQINVSE------NQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 658 ~I~~~g~~~L~~~L~~~~sL~~LdLs~------N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
.|+. ++..+..+++|+.|+|++ |.+.. .++..+..+++|+.|++++|.-
T Consensus 524 ~l~~-----ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 524 SFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTLR----EWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCSS-----CCCGGGGCSSCCEEECCSCBCTTCCBCCC----CCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCC-----cChhhhcCCCCCEEECCCCcccccCcccc----cChHHHhcCCCCCEEECCCCcC
Confidence 7764 344555677777777743 44433 2445566677777777777654
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=5.7e-17 Score=203.15 Aligned_cols=322 Identities=15% Similarity=0.134 Sum_probs=179.2
Q ss_pred CcchhhcccCCccccCCCCChhhH---------------HHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHh
Q psy18075 337 GPAVIELNHKGRMTDKPNDDVSDI---------------LKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAIN 401 (999)
Q Consensus 337 ~P~v~~L~~~l~~ld~~~~~~~~I---------------~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~ 401 (999)
.|..+.-..+++.+++..+.+... ..+...+.-..-..++.|++++|.+.- .++..+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~-------~iP~~l~ 512 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT-------QLPDFLY 512 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC-------SCCGGGG
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc-------cChHHHh
Confidence 344454455666666666665551 012222220011268889999988631 3456688
Q ss_pred cCCCcCEEEccCCC-CCh-hHHHHHHHHH---hhChhhHHHhhhhcccCCCccccch--HHHHhhhhhhccCCcccEEEe
Q psy18075 402 EVKVLVSLNLEGNT-LGV-NAAKAIADAL---SKHEHFKRALWKDMFTGRMKTEIPD--ALRYLGNGLQQAGARLVELDL 474 (999)
Q Consensus 402 ~~~~L~~LdLs~N~-L~~-~~~~~L~~~L---~~~~~Lk~ll~~nl~t~rl~~~ip~--~l~~L~~~L~~~~~sL~~LdL 474 (999)
.+++|+.|+|++|. +.. ..+..+...- ..+++|+. .++..+++. .+|. .+. .+++|+.|+|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~---L~Ls~N~L~-~ip~~~~l~--------~L~~L~~L~L 580 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI---FYMGYNNLE-EFPASASLQ--------KMVKLGLLDC 580 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE---EECCSSCCC-BCCCHHHHT--------TCTTCCEEEC
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE---EEeeCCcCC-ccCChhhhh--------cCCCCCEEEC
Confidence 88999999999997 876 5555554321 22234432 233344444 5665 443 3457777788
Q ss_pred cCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhcc--------------CCcCCCCC--CCcc
Q psy18075 475 SDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE--------------SSKKEGSP--LALK 538 (999)
Q Consensus 475 S~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~--------------~s~~~g~~--~sLk 538 (999)
++|.|+... .+ ..+++|+.|+|++|.|+. +...+..+.. ++..++.. .+|+
T Consensus 581 s~N~l~~lp--~~------~~L~~L~~L~Ls~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 581 VHNKVRHLE--AF------GTNVKLTDLKLDYNQIEE-----IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647 (876)
T ss_dssp TTSCCCBCC--CC------CTTSEESEEECCSSCCSC-----CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEE
T ss_pred CCCCcccch--hh------cCCCcceEEECcCCcccc-----chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCC
Confidence 777776332 22 234567777777777651 1111111100 01111111 2266
Q ss_pred EEEccCCCCCchhHHHHHHHHh--hcccccccccCCCccCchhhhhhhHH-hhhcccCceeeccCCCCCcCCcccccccc
Q psy18075 539 VFIAGRNRLENEGAKMLAAVFK--KLKTLERVEMPQNGIYHVGITALSDA-FEENKNLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 539 ~L~Ls~N~L~d~g~~~L~~~L~--~~~sLe~LdLs~N~It~~g~~~La~a-L~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
.|+|++|++..... .++..+. .+++|+.|+|++|.|+. ++.. +..+++|+.|+|++|.|+. ++..+
T Consensus 648 ~L~Ls~N~l~g~ip-~l~~~l~~~~~~~L~~L~Ls~N~L~~-----lp~~~~~~l~~L~~L~Ls~N~L~~-----ip~~~ 716 (876)
T 4ecn_A 648 SVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLSYNEIQK-----FPTELFATGSPISTIILSNNLMTS-----IPENS 716 (876)
T ss_dssp EEECCSSCTTTTSS-SCSSCTTTCCCCCEEEEECCSSCCCS-----CCHHHHHTTCCCSEEECCSCCCSC-----CCTTS
T ss_pred EEECcCCcCCCccc-cchhhhccccCCCcCEEEccCCcCCc-----cCHHHHccCCCCCEEECCCCcCCc-----cChHH
Confidence 66666666653210 0000111 12366777777777663 3333 3356777888888777762 22222
Q ss_pred c--------CCCCCcEEEcCCCCCCccchHHHHHhcc--CCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccC-
Q psy18075 616 S--------KLPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE- 684 (999)
Q Consensus 616 ~--------~l~sL~~LdLs~N~L~d~g~~~La~aL~--~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~- 684 (999)
. .+++|+.|+|++|.++. ++..+. .+++|+.|+|++|.|+. ++..+..+++|+.|+|++
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSS-----FPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCTTCCEEECCCC
T ss_pred hccccccccccCCccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCc-----cchhhhcCCCCCEEECCCC
Confidence 2 22377888888887762 345554 56778888888887774 344566777888887765
Q ss_pred -----CCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 685 -----NQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 685 -----N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
|.+.. .++..+..+++|+.|++++|.-
T Consensus 787 ~~ls~N~l~~----~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 787 RDAEGNRILR----QWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp BCTTCCBCCC----CCCTTGGGCSSCCEEECCSSCC
T ss_pred CCcccccccc----cChHHHhcCCCCCEEECCCCCC
Confidence 44443 2445667777888888877765
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=186.14 Aligned_cols=332 Identities=16% Similarity=0.184 Sum_probs=209.5
Q ss_pred CCcchhhcccCCccccCCCCChhhHHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCC
Q psy18075 336 LGPAVIELNHKGRMTDKPNDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNT 415 (999)
Q Consensus 336 L~P~v~~L~~~l~~ld~~~~~~~~I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~ 415 (999)
+.|..+.-..+++.+++..+....+... .-..++.|++++|.+... .++..+..+++|++|+|++|.
T Consensus 60 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-------~l~~L~~L~L~~N~l~~~------~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 60 LDISVFKFNQELEYLDLSHNKLVKISCH-------PTVNLKHLDLSFNAFDAL------PICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp EEGGGGTTCTTCCEEECCSSCCCEEECC-------CCCCCSEEECCSSCCSSC------CCCGGGGGCTTCCEEEEEESS
T ss_pred cChHHhhcccCCCEEecCCCceeecCcc-------ccCCccEEeccCCccccc------cchhhhccCCcceEEEecCcc
Confidence 3355555556777777777665543222 223688899999988421 123457888999999999999
Q ss_pred CChhHHHHHHHHHhhChhh--HHHhhhhcccCCC--ccccchHHHHhh--------------------------------
Q psy18075 416 LGVNAAKAIADALSKHEHF--KRALWKDMFTGRM--KTEIPDALRYLG-------------------------------- 459 (999)
Q Consensus 416 L~~~~~~~L~~~L~~~~~L--k~ll~~nl~t~rl--~~~ip~~l~~L~-------------------------------- 459 (999)
|..... ..++++ +.+ ++..+++ ....|..+..+.
T Consensus 127 l~~~~~-------~~l~~L~L~~L---~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 196 (520)
T 2z7x_B 127 LEKSSV-------LPIAHLNISKV---LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196 (520)
T ss_dssp CCGGGG-------GGGTTSCEEEE---EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECC
T ss_pred cchhhc-------cccccceeeEE---EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecc
Confidence 876322 222232 211 1111222 122222222110
Q ss_pred --------------h--hhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhh---------
Q psy18075 460 --------------N--GLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC--------- 514 (999)
Q Consensus 460 --------------~--~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~--------- 514 (999)
. .-+..+++|+.|+|++|.++...+..+...+. +++|++|++++|.++....
T Consensus 197 l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 273 (520)
T 2z7x_B 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW---HTTVWYFSISNVKLQGQLDFRDFDYSGT 273 (520)
T ss_dssp EEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH---TSSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred ccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhh---hCcccEEEeecccccCccccchhhcccc
Confidence 0 01234566777777777776655555544432 2478888888887652111
Q ss_pred -------------------hHHHHHHhh----------hccCCcC-CCCCCCccEEEccCCCCCchhHHHHHHHHhhccc
Q psy18075 515 -------------------KLLSKALHD----------CYESSKK-EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKT 564 (999)
Q Consensus 515 -------------------~~La~~L~~----------~~~~s~~-~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~s 564 (999)
..+...+.. +.-.... .+.+++|++|++++|++.+.. +..+..+++
T Consensus 274 ~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~ 349 (520)
T 2z7x_B 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV----FENCGHLTE 349 (520)
T ss_dssp CCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT----TTTCCCCSS
T ss_pred cCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhh----hhhhccCCC
Confidence 112222111 0000000 145678999999999988632 344567889
Q ss_pred ccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc-cccCCCCCcEEEcCCCCCCccchHHHHHhc
Q psy18075 565 LERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ-ALSKLPSLAILNLGDCLLKSAGASSIAKYL 643 (999)
Q Consensus 565 Le~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~-aL~~l~sL~~LdLs~N~L~d~g~~~La~aL 643 (999)
|++|+|++|.|+. +..++..+..+++|+.|+|++|.+... ++. .+..+++|+.|++++|.++... +..+
T Consensus 350 L~~L~L~~N~l~~--l~~~~~~~~~l~~L~~L~Ls~N~l~~~----l~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l 419 (520)
T 2z7x_B 350 LETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNSVSYD----EKKGDCSWTKSLLSLNMSSNILTDTI----FRCL 419 (520)
T ss_dssp CCEEECCSSCCCB--HHHHHHHHTTCTTCCEEECCSSCCBCC----GGGCSCCCCTTCCEEECCSSCCCGGG----GGSC
T ss_pred CCEEEccCCccCc--cccchHHHhhCCCCCEEECCCCcCCcc----cccchhccCccCCEEECcCCCCCcch----hhhh
Confidence 9999999999985 234667788899999999999998742 333 3556789999999999987432 2222
Q ss_pred cCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHH-HHhcCCCCCEEeCCCCCCCCCC
Q psy18075 644 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK-LMKSFGMAAALVLEDDEGECSD 719 (999)
Q Consensus 644 ~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~-~L~~l~~L~~L~Ls~N~~e~ed 719 (999)
. ++|+.|+|++|+|+. ++..+..+++|++|+|++|.|+.. +. .+..+++|+.|++++|....+.
T Consensus 420 ~--~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~L~~N~l~~l-----~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIKS-----IPKQVVKLEALQELNVASNQLKSV-----PDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp C--TTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred c--ccCCEEECCCCcccc-----cchhhhcCCCCCEEECCCCcCCcc-----CHHHhccCCcccEEECcCCCCcccC
Confidence 2 789999999999984 455566889999999999999862 22 4778899999999999876543
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=2.3e-17 Score=197.82 Aligned_cols=167 Identities=17% Similarity=0.161 Sum_probs=82.0
Q ss_pred CCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCc--
Q psy18075 531 EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGA-- 608 (999)
Q Consensus 531 ~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~-- 608 (999)
.+..++|+.|++++|++...+. ++..+..+++|++|+|++|.++.. +..+..+++|+.|+|++|.+.....
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGC--CSYSDLGTNSLRHLDLSFNGAIIM-----SANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEE--CCHHHHCCSCCCEEECCSCSEEEE-----CCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred hccCCCCCEEECcCCccCCCcc--hhhhhccCCcccEeECCCCccccc-----hhhccCCCCCCeeECCCCccCCccChh
Confidence 3456778888888888764321 123345566777777777765532 2333344445555555544432100
Q ss_pred -------------------ccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHH
Q psy18075 609 -------------------IPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 669 (999)
Q Consensus 609 -------------------~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~ 669 (999)
...+..+..+++|+.|++++|.+++.. ++..+..+++|+.|+|++|.++.. .+.
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~----~~~ 491 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQI----SWG 491 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEE----CTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc---hHHhhccCCCCCEEECCCCcCCcc----Chh
Confidence 012223334444455555544443211 123344445555555555555432 123
Q ss_pred hhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 670 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 670 ~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
.+..+++|++|+|++|.++.. .+..+..+++|+.|++++|.-
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFL----DSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCE----EGGGTTTCTTCCEEECTTSCC
T ss_pred hhcccccCCEEECCCCcCCCc----CHHHccCCCcCCEEECCCCcC
Confidence 344555555555555555542 133444555555555555543
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=3.7e-17 Score=195.91 Aligned_cols=200 Identities=17% Similarity=0.200 Sum_probs=143.8
Q ss_pred CCCCccEEEccCCccCchhhhHHHHHHhhhcc-------------CCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhh
Q psy18075 495 CCFALEELKLNNNGLGITGCKLLSKALHDCYE-------------SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK 561 (999)
Q Consensus 495 ~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~-------------~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~ 561 (999)
.+++|++|+|++|.++..+. +...+..++. .+..++..++|+.|++++|++..... ...+..
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~ 422 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGC--CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE---FSAFLS 422 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEE--CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT---TTTTTT
T ss_pred cCCCCCEEECcCCccCCCcc--hhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC---hhhhhc
Confidence 45678888888887763321 0111111111 12234556778888888887764321 124566
Q ss_pred cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHH
Q psy18075 562 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641 (999)
Q Consensus 562 ~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~ 641 (999)
+++|++|+|++|.++.. ++..+..+++|+.|+|++|.+.+. .++..+..+++|+.|+|++|.++... +.
T Consensus 423 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~ 491 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKID----FDGIFLGLTSLNTLKMAGNSFKDN---TLSNVFANTTNLTFLDLSKCQLEQIS----WG 491 (606)
T ss_dssp CTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEEC----TT
T ss_pred cccCCEEECcCCCCCcc----chhhhcCCCCCCEEECCCCcCCCc---chHHhhccCCCCCEEECCCCcCCccC----hh
Confidence 78888888888888764 345667788999999999988742 24667788999999999999998543 45
Q ss_pred hccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCC-CCCEEeCCCCCCCCCC
Q psy18075 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG-MAAALVLEDDEGECSD 719 (999)
Q Consensus 642 aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~-~L~~L~Ls~N~~e~ed 719 (999)
.+..+++|++|+|++|+++.. .+..+..+++|+.|+|++|+|+. ++..+..++ +|+.|++++|....+.
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~-----~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFL----DSSHYNQLYSLSTLDCSFNRIET-----SKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCE----EGGGTTTCTTCCEEECTTSCCCC-----EESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred hhcccccCCEEECCCCcCCCc----CHHHccCCCcCCEEECCCCcCcc-----cCHhHhhhcccCcEEEccCCCcccCC
Confidence 677789999999999999873 35567789999999999999985 444477776 5999999999876544
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.65 E-value=4e-17 Score=181.64 Aligned_cols=275 Identities=20% Similarity=0.214 Sum_probs=175.1
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+.... +..+..+++|++|+|++|.|....... +..+++|+.+. +..+++. .+|.
T Consensus 55 ~l~~L~l~~n~i~~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~---L~~n~l~-~l~~ 119 (332)
T 2ft3_A 55 DTTLLDLQNNDISELR-------KDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRKLQKLY---ISKNHLV-EIPP 119 (332)
T ss_dssp TCCEEECCSSCCCEEC-------TTTTTTCTTCCEEECCSSCCCEECGGG----STTCTTCCEEE---CCSSCCC-SCCS
T ss_pred CCeEEECCCCcCCccC-------HhHhhCCCCCcEEECCCCccCccCHhH----hhCcCCCCEEE---CCCCcCC-ccCc
Confidence 6778999998884211 234678889999999999887643322 23344443322 2222222 2332
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+ .++|++|+|++|.++......+ ..+++|++|++++|.++..+.. . ..++.
T Consensus 120 ~~----------~~~L~~L~l~~n~i~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~--~----------~~~~~ 171 (332)
T 2ft3_A 120 NL----------PSSLVELRIHDNRIRKVPKGVF------SGLRNMNCIEMGGNPLENSGFE--P----------GAFDG 171 (332)
T ss_dssp SC----------CTTCCEEECCSSCCCCCCSGGG------SSCSSCCEEECCSCCCBGGGSC--T----------TSSCS
T ss_pred cc----------cccCCEEECCCCccCccCHhHh------CCCccCCEEECCCCccccCCCC--c----------ccccC
Confidence 21 1578888888888876554333 2346888888888887632211 0 11122
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
. +|+.|++++|+++.- +..+ .++|++|+|++|.|+... +..+..+++|+.|+|++|.++.. ...
T Consensus 172 l-~L~~L~l~~n~l~~l-----~~~~--~~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~L~~N~l~~~----~~~ 235 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTGI-----PKDL--PETLNELHLDHNKIQAIE----LEDLLRYSKLYRLGLGHNQIRMI----ENG 235 (332)
T ss_dssp C-CCSCCBCCSSBCSSC-----CSSS--CSSCSCCBCCSSCCCCCC----TTSSTTCTTCSCCBCCSSCCCCC----CTT
T ss_pred C-ccCEEECcCCCCCcc-----Cccc--cCCCCEEECCCCcCCccC----HHHhcCCCCCCEEECCCCcCCcC----Chh
Confidence 2 688888888887742 1111 268888888888887643 24556678899999999888752 223
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhh--ccCCCcCEEEccCCCCChhc
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM--KNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L--~~~~sL~~LdLs~N~Is~eg 691 (999)
.+..+++|+.|++++|.++. ++..+..+++|+.|+|++|+|+..+...+.... ...+.|+.|++.+|++...+
T Consensus 236 ~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp GGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred HhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 45668889999999988862 445567778899999999988876554433211 11467888999999886422
Q ss_pred HHHHHHHHhcCCCCCEEeCCCCC
Q psy18075 692 VEEMEKLMKSFGMAAALVLEDDE 714 (999)
Q Consensus 692 ~~~L~~~L~~l~~L~~L~Ls~N~ 714 (999)
....++..++.|+.+++++|.
T Consensus 311 --~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 --VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp --SCGGGGTTBCCSTTEEC----
T ss_pred --cCcccccccchhhhhhccccc
Confidence 223567778888888887763
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=1.5e-16 Score=189.80 Aligned_cols=162 Identities=18% Similarity=0.277 Sum_probs=104.1
Q ss_pred CCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccc
Q psy18075 532 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 532 g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
+.+++|++|++++|++++. ++..+..+++|+.|+|++|.|+.. ..++..+..+++|+.|+|++|.+... +
T Consensus 350 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~l~~~----~ 419 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSH----A 419 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSCCBSC----C
T ss_pred cCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCcCCCc----c
Confidence 3455677777777776642 223445566777777777777642 23445566677777777777777631 2
Q ss_pred cc-cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 612 GQ-ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 612 ~~-aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
+. .+..+++|+.|++++|.++.. ++..+. ++|+.|+|++|.|+. ++..+..+++|++|+|++|.|+.
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~--~~L~~L~L~~N~l~~-----ip~~~~~l~~L~~L~L~~N~l~~- 487 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGS----VFRCLP--PKVKVLDLHNNRIMS-----IPKDVTHLQALQELNVASNQLKS- 487 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGG----GGSSCC--TTCSEEECCSSCCCC-----CCTTTTSSCCCSEEECCSSCCCC-
T ss_pred ChhhhcCcccCCEEECCCCCCCcc----hhhhhc--CcCCEEECCCCcCcc-----cChhhcCCCCCCEEECCCCCCCC-
Confidence 21 244566777777777777532 122211 678888888888873 44445577888888888888875
Q ss_pred cHHHHHH-HHhcCCCCCEEeCCCCCCCCCC
Q psy18075 691 GVEEMEK-LMKSFGMAAALVLEDDEGECSD 719 (999)
Q Consensus 691 g~~~L~~-~L~~l~~L~~L~Ls~N~~e~ed 719 (999)
++. .+..+++|+.|++++|....+-
T Consensus 488 ----l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 488 ----VPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp ----CCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred ----CCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 233 3677888888888888766543
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.65 E-value=8.5e-17 Score=192.82 Aligned_cols=133 Identities=15% Similarity=0.266 Sum_probs=76.4
Q ss_pred cccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhc
Q psy18075 564 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643 (999)
Q Consensus 564 sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL 643 (999)
+|+.|++++|.++... ...+..+++|+.|+|++|.++ .++..+..+++|++|++++|.++... +..+
T Consensus 255 ~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~l~~~~----~~~~ 321 (606)
T 3t6q_A 255 SVESINLQKHYFFNIS----SNTFHCFSGLQELDLTATHLS-----ELPSGLVGLSTLKKLVLSANKFENLC----QISA 321 (606)
T ss_dssp EEEEEECTTCCCSSCC----TTTTTTCTTCSEEECTTSCCS-----CCCSSCCSCTTCCEEECTTCCCSBGG----GGCG
T ss_pred ceeEEEeecCccCccC----HHHhccccCCCEEeccCCccC-----CCChhhcccccCCEEECccCCcCcCc----hhhh
Confidence 3444555555544321 223555677777777777766 35556667777777777777776332 2344
Q ss_pred cCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCC
Q psy18075 644 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 714 (999)
Q Consensus 644 ~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~ 714 (999)
..+++|++|++++|.+...- ....+..+++|++|++++|.++.... ....+..+++|+.|++++|.
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLEL---GTGCLENLENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBC---CSSTTTTCTTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSCS
T ss_pred hccCcCCEEECCCCCccccc---chhhhhccCcCCEEECCCCccccccC--cchhcccCCCCCEEECCCCc
Confidence 55567777777777655211 01124556677777777776655320 12235566666666666654
No 46
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=7.3e-17 Score=190.05 Aligned_cols=193 Identities=18% Similarity=0.207 Sum_probs=137.4
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
.+++|+.|+|++|.|+..+ .+++|++|+|++|.|+..... ..++|+.|+|++
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~-----------~~~~L~~L~L~~N~l~~~~~~-----------------~l~~L~~L~L~~ 129 (487)
T 3oja_A 78 SLSTLRTLDLNNNYVQELL-----------VGPSIETLHAANNNISRVSCS-----------------RGQGKKNIYLAN 129 (487)
T ss_dssp TCTTCCEEECCSSEEEEEE-----------ECTTCCEEECCSSCCCCEEEC-----------------CCSSCEEEECCS
T ss_pred cCCCCCEEEecCCcCCCCC-----------CCCCcCEEECcCCcCCCCCcc-----------------ccCCCCEEECCC
Confidence 3568888999988886543 125888999998888743321 124689999999
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~L 624 (999)
|+++... +..+..+++|+.|+|++|.|+......+. ..+++|+.|+|++|.|+. + ..+..+++|+.|
T Consensus 130 N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~~l~~L~~L~Ls~N~l~~-----~-~~~~~l~~L~~L 196 (487)
T 3oja_A 130 NKITMLR----DLDEGCRSRVQYLDLKLNEIDTVNFAELA---ASSDTLEHLNLQYNFIYD-----V-KGQVVFAKLKTL 196 (487)
T ss_dssp SCCCSGG----GBCGGGGSSEEEEECTTSCCCEEEGGGGG---GGTTTCCEEECTTSCCCE-----E-ECCCCCTTCCEE
T ss_pred CCCCCCC----chhhcCCCCCCEEECCCCCCCCcChHHHh---hhCCcccEEecCCCcccc-----c-cccccCCCCCEE
Confidence 9988642 23456678899999999998875332222 256889999999998874 2 223357889999
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~ 704 (999)
+|++|.++.. +..+..+++|+.|+|++|.|+. ++..+..+++|+.|++++|++... .++..+..++.
T Consensus 197 ~Ls~N~l~~~-----~~~~~~l~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~c~---~~~~~~~~l~~ 263 (487)
T 3oja_A 197 DLSSNKLAFM-----GPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQR 263 (487)
T ss_dssp ECCSSCCCEE-----CGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECTTCCBCHH---HHHHHHTTCHH
T ss_pred ECCCCCCCCC-----CHhHcCCCCccEEEecCCcCcc-----cchhhccCCCCCEEEcCCCCCcCc---chHHHHHhCCC
Confidence 9999988743 3346667889999999998884 444567788899999999988732 45566677777
Q ss_pred CCEEeCC
Q psy18075 705 AAALVLE 711 (999)
Q Consensus 705 L~~L~Ls 711 (999)
|+.+++.
T Consensus 264 L~~l~~~ 270 (487)
T 3oja_A 264 VQTVAKQ 270 (487)
T ss_dssp HHHHHHH
T ss_pred CcEEecc
Confidence 7766553
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=1.3e-16 Score=192.10 Aligned_cols=273 Identities=17% Similarity=0.154 Sum_probs=180.8
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.+..+++.++.+.... ...+..+++|+.|+|++|.|.......| ..+++|+.+ ++..+++....|.
T Consensus 52 ~l~~l~l~~~~l~~lp-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L---~L~~n~l~~~~~~ 117 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLP-------AALLDSFRQVELLNLNDLQIEEIDTYAF----AYAHTIQKL---YMGFNAIRYLPPH 117 (597)
T ss_dssp CCSEEEESSCEESEEC-------THHHHHCCCCSEEECTTSCCCEECTTTT----TTCTTCCEE---ECCSSCCCCCCTT
T ss_pred CceEEEeeCCCCCCcC-------HHHHccCCCCcEEECCCCCCCCCChHHh----cCCCCCCEE---ECCCCcCCCCCHH
Confidence 4567788887773221 1235677888888888888876433322 234444332 2223333333332
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
. +..+++|+.|+|++|.|+......| ..+++|++|+|++|.|+...... ++.
T Consensus 118 ~--------~~~l~~L~~L~L~~n~l~~l~~~~~------~~l~~L~~L~Ls~N~l~~~~~~~--------------~~~ 169 (597)
T 3oja_B 118 V--------FQNVPLLTVLVLERNDLSSLPRGIF------HNTPKLTTLSMSNNNLERIEDDT--------------FQA 169 (597)
T ss_dssp T--------TTTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCSSCCCBCCTTT--------------TTT
T ss_pred H--------HcCCCCCCEEEeeCCCCCCCCHHHh------ccCCCCCEEEeeCCcCCCCChhh--------------hhc
Confidence 2 2346799999999999986654433 23579999999999987433222 233
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhh--------------hhhHHhhhcccCceeecc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT--------------ALSDAFEENKNLRHLNLN 599 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~--------------~La~aL~~~~~Lr~LdLS 599 (999)
+++|+.|+|++|+++..+ +..+++|+.|++++|.++..+.. .+... ..++|+.|+|+
T Consensus 170 l~~L~~L~L~~N~l~~~~-------~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~ 240 (597)
T 3oja_B 170 TTSLQNLQLSSNRLTHVD-------LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQ 240 (597)
T ss_dssp CTTCCEEECTTSCCSBCC-------GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECC
T ss_pred CCcCcEEECcCCCCCCcC-------hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECC
Confidence 467999999999888643 33356666666666655532110 00110 12468888888
Q ss_pred CCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCE
Q psy18075 600 DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 679 (999)
Q Consensus 600 ~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~ 679 (999)
+|.+++. ..+..+++|+.|+|++|.++.. ++..+..+++|+.|+|++|.++.- +..+..+++|+.
T Consensus 241 ~n~l~~~------~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~ 305 (597)
T 3oja_B 241 HNNLTDT------AWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKV 305 (597)
T ss_dssp SSCCCCC------GGGGGCTTCSEEECCSSCCCEE----ESGGGTTCSSCCEEECTTSCCCEE-----ECSSSCCTTCCE
T ss_pred CCCCCCC------hhhccCCCCCEEECCCCccCCC----CHHHhcCccCCCEEECCCCCCCCC-----CcccccCCCCcE
Confidence 8887742 3566788999999999998754 345667789999999999998852 334456889999
Q ss_pred EEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 680 INVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 680 LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
|+|++|.++. ++..+..+++|+.|++++|.-..
T Consensus 306 L~Ls~N~l~~-----i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 306 LDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp EECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCCC
T ss_pred EECCCCCCCc-----cCcccccCCCCCEEECCCCCCCC
Confidence 9999999985 44556778899999999987643
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=2e-16 Score=173.59 Aligned_cols=199 Identities=21% Similarity=0.185 Sum_probs=117.4
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|++|+|++|.+...... + ..+++|++|+|++|.++..... . .++..++|++|++++|
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~-~------~~l~~L~~L~l~~n~l~~~~~~---~----------~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSN-F------LGLEQLEHLDFQHSNLKQMSEF---S----------VFLSLRNLIYLDISHT 136 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEE-E------ETCTTCCEEECTTSEEESSTTT---T----------TTTTCTTCCEEECTTS
T ss_pred ccccCEEECCCCccccChhh-c------CCCCCCCEEECCCCcccccccc---h----------hhhhccCCCEEECCCC
Confidence 35777777777776532211 1 2345777777777776533210 0 1123355777777777
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
++.... +..+..+++|++|+|++|.++.. .++..+..+++|+.|+|++|.++. ..+..+..+++|+.|+
T Consensus 137 ~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 137 HTRVAF----NGIFNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLN 205 (306)
T ss_dssp CCEECS----TTTTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEE
T ss_pred cCCccc----hhhcccCcCCCEEECCCCccccc---cchhHHhhCcCCCEEECCCCCcCC----cCHHHhcCCCCCCEEE
Confidence 765432 22345567777777777777642 133455566777777777777764 2234555677777777
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccC-CCcCEEEccCCCCChh-cHHHHHHHHhcCC
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQFGEE-GVEEMEKLMKSFG 703 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~-~sL~~LdLs~N~Is~e-g~~~L~~~L~~l~ 703 (999)
|++|.++.... ..+..+++|+.|+|++|.|+... ...+..+ ++|++|+|++|++... ....+...++..+
T Consensus 206 L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~ 277 (306)
T 2z66_A 206 MSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIMTSK----KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 277 (306)
T ss_dssp CTTSCCSBCCS----GGGTTCTTCCEEECTTSCCCBCS----SSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTG
T ss_pred CCCCccCccCh----hhccCcccCCEeECCCCCCcccC----HHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhh
Confidence 77777765432 23455677777777777776532 2234444 3777777777777543 2334445554433
No 49
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.63 E-value=6.5e-15 Score=171.70 Aligned_cols=279 Identities=18% Similarity=0.220 Sum_probs=185.7
Q ss_pred ccCCccccCCCCChhhHHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHH
Q psy18075 344 NHKGRMTDKPNDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKA 423 (999)
Q Consensus 344 ~~~l~~ld~~~~~~~~I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~ 423 (999)
..+++.+++.......+.. + ... ..++.|++++|.+... . . +..+++|++|+|++|.+.....
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~---~~l--~~L~~L~l~~n~l~~~---~-----~-~~~l~~L~~L~L~~n~l~~~~~-- 129 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-L---KNL--TKLVDILMNNNQIADI---T-----P-LANLTNLTGLTLFNNQITDIDP-- 129 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-G---TTC--TTCCEEECCSSCCCCC---G-----G-GTTCTTCCEEECCSSCCCCCGG--
T ss_pred hcCCCEEECCCCccCCchh-h---hcc--ccCCEEECCCCccccC---h-----h-hcCCCCCCEEECCCCCCCCChH--
Confidence 3455555555555554433 1 111 1566777777776321 1 1 5667777777777777765321
Q ss_pred HHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEE
Q psy18075 424 IADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELK 503 (999)
Q Consensus 424 L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~ 503 (999)
+..+++|+.+.... +++.. ++ -+..+++|+.|++++ .+.... .+ ..+++|++|+
T Consensus 130 ----~~~l~~L~~L~l~~---n~l~~-~~---------~~~~l~~L~~L~l~~-~~~~~~--~~------~~l~~L~~L~ 183 (466)
T 1o6v_A 130 ----LKNLTNLNRLELSS---NTISD-IS---------ALSGLTSLQQLSFGN-QVTDLK--PL------ANLTTLERLD 183 (466)
T ss_dssp ----GTTCTTCSEEEEEE---EEECC-CG---------GGTTCTTCSEEEEEE-SCCCCG--GG------TTCTTCCEEE
T ss_pred ----HcCCCCCCEEECCC---CccCC-Ch---------hhccCCcccEeecCC-cccCch--hh------ccCCCCCEEE
Confidence 33444443322211 11111 11 022456777777763 332221 12 3457899999
Q ss_pred ccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhh
Q psy18075 504 LNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL 583 (999)
Q Consensus 504 Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~L 583 (999)
+++|.++... . +.. +++|++|++++|++..... +..+++|++|++++|.++..
T Consensus 184 l~~n~l~~~~--~----l~~----------l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~----- 236 (466)
T 1o6v_A 184 ISSNKVSDIS--V----LAK----------LTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDI----- 236 (466)
T ss_dssp CCSSCCCCCG--G----GGG----------CTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCC-----
T ss_pred CcCCcCCCCh--h----hcc----------CCCCCEEEecCCccccccc------ccccCCCCEEECCCCCcccc-----
Confidence 9999887432 1 222 3569999999999886432 56688999999999998864
Q ss_pred hHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcc
Q psy18075 584 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 663 (999)
Q Consensus 584 a~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g 663 (999)
..+..+++|+.|++++|.+... .. +..+++|+.|++++|.++.... +..+++|+.|+|++|.++...
T Consensus 237 -~~l~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 237 -GTLASLTNLTDLDLANNQISNL-----AP-LSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDIS 303 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCC-----GG-GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCG
T ss_pred -hhhhcCCCCCEEECCCCccccc-----hh-hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCch
Confidence 3466789999999999998742 22 6778999999999999975321 667899999999999998632
Q ss_pred hhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 664 GLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 664 ~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
.+..+++|+.|+|++|.++.... +..+++|+.|++++|.-.+
T Consensus 304 ------~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 304 ------PISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp ------GGGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCC
T ss_pred ------hhcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCC
Confidence 26789999999999999987432 6789999999999986644
No 50
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=4.5e-17 Score=197.86 Aligned_cols=318 Identities=14% Similarity=0.197 Sum_probs=197.1
Q ss_pred CcchhhcccCCccccCCCCC-hhh--HHHhhhhhcc-cCCCCccEEEeccCCCcCCChhhHHHHHH--HHhcCCCcCEEE
Q psy18075 337 GPAVIELNHKGRMTDKPNDD-VSD--ILKKLESISV-ESGQDSTKLSFAGQGLKLDNKEDAKVIVD--AINEVKVLVSLN 410 (999)
Q Consensus 337 ~P~v~~L~~~l~~ld~~~~~-~~~--I~~ll~~L~~-~~~~~l~~LsL~g~~L~~~s~~~~~~L~~--aL~~~~~L~~Ld 410 (999)
.|..+.-..+++.+++..+. +.. +..-+..+.. ..-..++.|++++|.+. .++. .+..+++|+.|+
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--------~ip~~~~l~~l~~L~~L~ 336 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--------TFPVETSLQKMKKLGMLE 336 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--------SCCCHHHHTTCTTCCEEE
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--------ccCchhhhccCCCCCEEe
Confidence 34444444455556665554 433 3333333210 00015677777777773 2333 566777777777
Q ss_pred ccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCc-ccEEEecCCCCCCccHHHHHH
Q psy18075 411 LEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGAR-LVELDLSDNAFGPIGVEGLAD 489 (999)
Q Consensus 411 Ls~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~s-L~~LdLS~N~L~~~gv~~L~~ 489 (999)
|++|.+..... .+..+++|+.+ ++..+++. .+|..+. .+++ |++|+|++|.++... .
T Consensus 337 L~~N~l~g~ip-----~~~~l~~L~~L---~L~~N~l~-~lp~~l~--------~l~~~L~~L~Ls~N~l~~lp-----~ 394 (636)
T 4eco_A 337 CLYNQLEGKLP-----AFGSEIKLASL---NLAYNQIT-EIPANFC--------GFTEQVENLSFAHNKLKYIP-----N 394 (636)
T ss_dssp CCSCCCEEECC-----CCEEEEEESEE---ECCSSEEE-ECCTTSE--------EECTTCCEEECCSSCCSSCC-----S
T ss_pred CcCCcCccchh-----hhCCCCCCCEE---ECCCCccc-cccHhhh--------hhcccCcEEEccCCcCcccc-----h
Confidence 77777763222 22334444322 22222222 3443322 3456 899999999887432 1
Q ss_pred HHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccc
Q psy18075 490 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 569 (999)
Q Consensus 490 ~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~Ld 569 (999)
.+....+++|+.|+|++|.++......+... ....-...+|+.|+|++|+++... ...+..+++|++|+
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~-------~~~~~~~~~L~~L~Ls~N~l~~lp----~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL-------DPTPFKGINVSSINLSNNQISKFP----KELFSTGSPLSSIN 463 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTT-------CSSCCCCCCEEEEECCSSCCCSCC----THHHHTTCCCSEEE
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhccc-------ccccccCCCCCEEECcCCccCcCC----HHHHccCCCCCEEE
Confidence 1222223478999999998864322222100 000013457999999999998422 12345589999999
Q ss_pred cCCCccCchhhhhhhHH---hhhcccCceeeccCCCCCcCCccccccccc--CCCCCcEEEcCCCCCCccchHHHHHhcc
Q psy18075 570 MPQNGIYHVGITALSDA---FEENKNLRHLNLNDNTITYKGAIPLGQALS--KLPSLAILNLGDCLLKSAGASSIAKYLT 644 (999)
Q Consensus 570 Ls~N~It~~g~~~La~a---L~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~--~l~sL~~LdLs~N~L~d~g~~~La~aL~ 644 (999)
|++|.|+......+... +..+++|+.|+|++|.++ .++..+. .+++|+.|+|++|.++. ++..+.
T Consensus 464 Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~ 533 (636)
T 4eco_A 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-----KLSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPL 533 (636)
T ss_dssp CCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-----BCCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGG
T ss_pred CCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-----ccChhhhhccCCCcCEEECCCCCCCC-----cChhhh
Confidence 99999984322211111 223449999999999998 3666776 88999999999999973 456677
Q ss_pred CCCCCCEEEccC------CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 645 DNTTLEDVNLTC------NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 645 ~~~~L~~LdLs~------N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
.+++|+.|+|++ |.+.. .++..+..+++|+.|+|++|.|+. ++..+. ++|+.|++++|.-.
T Consensus 534 ~l~~L~~L~Ls~N~~ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 534 NSSTLKGFGIRNQRDAQGNRTLR----EWPEGITLCPSLTQLQIGSNDIRK-----VNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp GCSSCCEEECCSCBCTTCCBCCC----CCCTTGGGCSSCCEEECCSSCCCB-----CCSCCC--TTCCEEECCSCTTC
T ss_pred cCCCCCEEECCCCcccccCcccc----cChHHHhcCCCCCEEECCCCcCCc-----cCHhHh--CcCCEEECcCCCCc
Confidence 789999999955 55554 356677889999999999999965 233222 79999999998654
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=6e-17 Score=179.52 Aligned_cols=225 Identities=18% Similarity=0.143 Sum_probs=165.4
Q ss_pred HHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEec
Q psy18075 396 IVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLS 475 (999)
Q Consensus 396 L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS 475 (999)
+...+..+++|++|+|++|.|.......+. .+++|+.|+|+
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---------------------------------------~l~~L~~L~Ls 66 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLA---------------------------------------PFTKLELLNLS 66 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCCCCHHHHT---------------------------------------TCTTCCEEECT
T ss_pred HHHHhccCCCCCEEECcCCccCcCCHHHhh---------------------------------------CCCcCCEEECC
Confidence 334455667899999999998764322221 24689999999
Q ss_pred CCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHH
Q psy18075 476 DNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKML 555 (999)
Q Consensus 476 ~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L 555 (999)
+|.+..... + ..+++|++|+|++|.|+... ..++|++|++++|+++....
T Consensus 67 ~n~l~~~~~--~------~~l~~L~~L~Ls~n~l~~l~-------------------~~~~L~~L~l~~n~l~~~~~--- 116 (317)
T 3o53_A 67 SNVLYETLD--L------ESLSTLRTLDLNNNYVQELL-------------------VGPSIETLHAANNNISRVSC--- 116 (317)
T ss_dssp TSCCEEEEE--E------TTCTTCCEEECCSSEEEEEE-------------------ECTTCCEEECCSSCCSEEEE---
T ss_pred CCcCCcchh--h------hhcCCCCEEECcCCcccccc-------------------CCCCcCEEECCCCccCCcCc---
Confidence 999964432 2 33578999999999886322 11459999999999886432
Q ss_pred HHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccc
Q psy18075 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG 635 (999)
Q Consensus 556 ~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g 635 (999)
..+++|++|+|++|.|+... +..+..+++|+.|+|++|.++......+ ...+++|++|+|++|.++..
T Consensus 117 ----~~~~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 117 ----SRGQGKKNIYLANNKITMLR----DLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp ----CCCSSCEEEECCSSCCCSGG----GBCTGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTTSCCCEE-
T ss_pred ----cccCCCCEEECCCCCCCCcc----chhhhccCCCCEEECCCCCCCcccHHHH---hhccCcCCEEECCCCcCccc-
Confidence 23678999999999998642 2345668899999999999985322222 23578999999999998743
Q ss_pred hHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 636 ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 636 ~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
.....+++|+.|+|++|.|+.. ...+..+++|+.|+|++|.|+. ++..+..+++|+.|++++|..
T Consensus 185 -----~~~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 185 -----KGQVVFAKLKTLDLSSNKLAFM-----GPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp -----ECCCCCTTCCEEECCSSCCCEE-----CGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECTTCCC
T ss_pred -----ccccccccCCEEECCCCcCCcc-----hhhhcccCcccEEECcCCcccc-----hhhHhhcCCCCCEEEccCCCc
Confidence 2233468999999999999853 3346778999999999999985 455677889999999999877
Q ss_pred C
Q psy18075 716 E 716 (999)
Q Consensus 716 e 716 (999)
.
T Consensus 250 ~ 250 (317)
T 3o53_A 250 H 250 (317)
T ss_dssp B
T ss_pred c
Confidence 5
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=1.3e-16 Score=175.08 Aligned_cols=253 Identities=19% Similarity=0.228 Sum_probs=185.1
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
....++..++++..... .-.++|++|+|++|.+.....
T Consensus 8 ~~~~l~c~~~~l~~ip~----------~~~~~l~~L~L~~n~l~~i~~-------------------------------- 45 (306)
T 2z66_A 8 SGTEIRCNSKGLTSVPT----------GIPSSATRLELESNKLQSLPH-------------------------------- 45 (306)
T ss_dssp ETTEEECCSSCCSSCCS----------CCCTTCCEEECCSSCCCCCCT--------------------------------
T ss_pred CCCEEEcCCCCcccCCC----------CCCCCCCEEECCCCccCccCH--------------------------------
Confidence 34567777777743211 123689999999998864110
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccH--HHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGV--EGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKE 531 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv--~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~ 531 (999)
..+..+++|++|+|++|.++..+. ..+. .+++|++|+|++|.++... .. +
T Consensus 46 -------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~------~~~~L~~L~Ls~n~i~~l~-----~~----------~ 97 (306)
T 2z66_A 46 -------GVFDKLTQLTKLSLSSNGLSFKGCCSQSDF------GTTSLKYLDLSFNGVITMS-----SN----------F 97 (306)
T ss_dssp -------TTTTTCTTCSEEECCSSCCCEEEEEEHHHH------SCSCCCEEECCSCSEEEEE-----EE----------E
T ss_pred -------hHhhccccCCEEECCCCccCcccCcccccc------cccccCEEECCCCccccCh-----hh----------c
Confidence 111235799999999999986542 2222 2479999999999986321 11 2
Q ss_pred CCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccc
Q psy18075 532 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 532 g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
+..++|++|++++|++..... ...+..+++|++|+|++|.++.. .+..+..+++|+.|+|++|.+... .+
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~---~~ 167 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQEN---FL 167 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEEC----STTTTTTCTTCCEEECTTCEEGGG---EE
T ss_pred CCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCcc----chhhcccCcCCCEEECCCCccccc---cc
Confidence 234679999999999875432 12466789999999999998864 345567789999999999988742 25
Q ss_pred cccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
+..+..+++|+.|++++|.++... +..+..+++|+.|+|++|.|+.... ..+..+++|++|+|++|.++...
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTSCCSBCCS----GGGTTCTTCCEEECTTSCCCBCS
T ss_pred hhHHhhCcCCCEEECCCCCcCCcC----HHHhcCCCCCCEEECCCCccCccCh----hhccCcccCCEeECCCCCCcccC
Confidence 567778999999999999998543 3556778999999999999987443 23567899999999999998742
Q ss_pred HHHHHHHHhcC-CCCCEEeCCCCCCCCC
Q psy18075 692 VEEMEKLMKSF-GMAAALVLEDDEGECS 718 (999)
Q Consensus 692 ~~~L~~~L~~l-~~L~~L~Ls~N~~e~e 718 (999)
...+..+ ++|+.|++++|.-..+
T Consensus 240 ----~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 240 ----KQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp ----SSSCCCCCTTCCEEECTTCCEECS
T ss_pred ----HHHHHhhhccCCEEEccCCCeecc
Confidence 2345566 4899999999987554
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.63 E-value=7.1e-17 Score=191.41 Aligned_cols=166 Identities=15% Similarity=0.188 Sum_probs=86.0
Q ss_pred CCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccc
Q psy18075 532 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 532 g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
+.+++|+.|++++|++...+. ++..+..+++|++|+|++|.++... ..+..+++|+.|++++|.+.....
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~--- 413 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITMS-----SNFLGLEQLEHLDFQHSNLKQMSE--- 413 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSCSEEEEE-----EEEETCTTCCEEECTTSEEESCTT---
T ss_pred ccCCCCCEEeCcCCccCcccc--ccccccccCccCEEECCCCcccccc-----ccccccCCCCEEEccCCccccccc---
Confidence 456789999999999875431 1234556788888888888776532 224456666666666665543210
Q ss_pred cccccCCCCCcEEEcCCCCCCccch---------------------HHHHHhccCCCCCCEEEccCCCCCCcchhhHHHh
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGA---------------------SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 670 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~---------------------~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~ 670 (999)
...+..+++|+.|++++|.+..... ..++..+..+++|+.|+|++|.++.. .+..
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~----~~~~ 489 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL----SPTA 489 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE----CTTT
T ss_pred hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC----Chhh
Confidence 1123344455555555554432210 01223344445555555555554431 1223
Q ss_pred hccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 671 MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 671 L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
+..+++|++|+|++|.++.. ....+..+++|+.|++++|..
T Consensus 490 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQLKSV----PDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCB
T ss_pred hhcccCCCEEeCCCCcCCCC----CHHHhhcccCCcEEEecCCcc
Confidence 34445555555555555442 112334455555555555543
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=4.1e-16 Score=169.51 Aligned_cols=207 Identities=18% Similarity=0.197 Sum_probs=158.2
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|++|+|++|.|+......+ ..+++|++|+|++|.++...... ++..++|++|++++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~~~--------------~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASF------RACRNLTILWLHSNVLARIDAAA--------------FTGLALLEQLDLSDNA 91 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTT------TTCTTCCEEECCSSCCCEECTTT--------------TTTCTTCCEEECCSCT
T ss_pred CCceEEEeeCCcCCccCHHHc------ccCCCCCEEECCCCccceeCHhh--------------cCCccCCCEEeCCCCC
Confidence 589999999999987665444 23578999999999987433222 2234679999999997
Q ss_pred -CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 547 -LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 547 -L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
++... +..+..+++|++|+|++|.|+.. .+..+..+++|++|+|++|.++.. ....+..+++|+.|+
T Consensus 92 ~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 92 QLRSVD----PATFHGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLF 159 (285)
T ss_dssp TCCCCC----TTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEE
T ss_pred CccccC----HHHhcCCcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCccccc----CHhHhccCCCccEEE
Confidence 76532 23466688999999999999864 245567789999999999998742 233466788999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCC
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L 705 (999)
+++|.++... ...+..+++|+.|+|++|.|+... +..+..+++|+.|+|++|.|+.. ....+..+++|
T Consensus 160 l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L 227 (285)
T 1ozn_A 160 LHGNRISSVP----ERAFRGLHSLDRLLLHQNRVAHVH----PHAFRDLGRLMTLYLFANNLSAL----PTEALAPLRAL 227 (285)
T ss_dssp CCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCSCC----CHHHHTTCTTC
T ss_pred CCCCcccccC----HHHhcCccccCEEECCCCcccccC----HhHccCcccccEeeCCCCcCCcC----CHHHcccCccc
Confidence 9999987443 234667799999999999998642 45667889999999999999873 23557889999
Q ss_pred CEEeCCCCCCCC
Q psy18075 706 AALVLEDDEGEC 717 (999)
Q Consensus 706 ~~L~Ls~N~~e~ 717 (999)
+.|++++|....
T Consensus 228 ~~L~l~~N~~~c 239 (285)
T 1ozn_A 228 QYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEeccCCCccC
Confidence 999999987654
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.63 E-value=4.3e-17 Score=181.34 Aligned_cols=271 Identities=18% Similarity=0.198 Sum_probs=164.7
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.+..++++++++.... ..+ .++|+.|+|++|.|....... +..+++|+.+ ++..+++....|.
T Consensus 34 ~l~~l~~~~~~l~~ip--------~~~--~~~l~~L~l~~n~i~~~~~~~----~~~l~~L~~L---~L~~n~l~~~~~~ 96 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP--------KEI--SPDTTLLDLQNNDISELRKDD----FKGLQHLYAL---VLVNNKISKIHEK 96 (332)
T ss_dssp ETTEEECCSSCCSSCC--------SCC--CTTCCEEECCSSCCCEECTTT----TTTCTTCCEE---ECCSSCCCEECGG
T ss_pred cCCEEECCCCCccccC--------CCC--CCCCeEEECCCCcCCccCHhH----hhCCCCCcEE---ECCCCccCccCHh
Confidence 5677888888874321 111 368999999999998643322 2334444322 2223333333333
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+ ..+++|++|+|++|.++...... .++|++|+|++|.++...... ++.
T Consensus 97 ~~--------~~l~~L~~L~L~~n~l~~l~~~~---------~~~L~~L~l~~n~i~~~~~~~--------------~~~ 145 (332)
T 2ft3_A 97 AF--------SPLRKLQKLYISKNHLVEIPPNL---------PSSLVELRIHDNRIRKVPKGV--------------FSG 145 (332)
T ss_dssp GS--------TTCTTCCEEECCSSCCCSCCSSC---------CTTCCEEECCSSCCCCCCSGG--------------GSS
T ss_pred Hh--------hCcCCCCEEECCCCcCCccCccc---------cccCCEEECCCCccCccCHhH--------------hCC
Confidence 32 23567888888888776433211 146788888887776332211 123
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
+++|+.|++++|.++..+.. +..+..+ +|+.|++++|.++.. +..+. ++|+.|+|++|.+... .+.
T Consensus 146 l~~L~~L~l~~n~l~~~~~~--~~~~~~l-~L~~L~l~~n~l~~l-----~~~~~--~~L~~L~l~~n~i~~~----~~~ 211 (332)
T 2ft3_A 146 LRNMNCIEMGGNPLENSGFE--PGAFDGL-KLNYLRISEAKLTGI-----PKDLP--ETLNELHLDHNKIQAI----ELE 211 (332)
T ss_dssp CSSCCEEECCSCCCBGGGSC--TTSSCSC-CCSCCBCCSSBCSSC-----CSSSC--SSCSCCBCCSSCCCCC----CTT
T ss_pred CccCCEEECCCCccccCCCC--cccccCC-ccCEEECcCCCCCcc-----Ccccc--CCCCEEECCCCcCCcc----CHH
Confidence 35688888888887643321 2233334 778888888877752 22222 5788888888877742 234
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHH
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 693 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~ 693 (999)
.+..+++|+.|++++|.++.... ..+..+++|+.|+|++|.|+. ++..+..+++|++|++++|.|+..+..
T Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHNQIRMIEN----GSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp SSTTCTTCSCCBCCSSCCCCCCT----TGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred HhcCCCCCCEEECCCCcCCcCCh----hHhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChh
Confidence 56667788888888888775432 345566888888888888873 444567788888888888888775443
Q ss_pred HHHHHH--hcCCCCCEEeCCCCCC
Q psy18075 694 EMEKLM--KSFGMAAALVLEDDEG 715 (999)
Q Consensus 694 ~L~~~L--~~l~~L~~L~Ls~N~~ 715 (999)
.+.... .....|+.|++++|..
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSSS
T ss_pred HccccccccccccccceEeecCcc
Confidence 332211 1145677888877754
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=1.9e-16 Score=198.40 Aligned_cols=208 Identities=14% Similarity=0.246 Sum_probs=139.0
Q ss_pred ccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCC
Q psy18075 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLE 548 (999)
Q Consensus 469 L~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~ 548 (999)
|+.|+|++|.|+... ..+....+++|+.|+|++|.|+... ..+...+. .-...+|+.|+|++|++.
T Consensus 621 L~~L~Ls~N~L~~lp-----~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~--------~~~~~~L~~L~Ls~N~L~ 686 (876)
T 4ecn_A 621 VEGLGFSHNKLKYIP-----NIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMD--------DYKGINASTVTLSYNEIQ 686 (876)
T ss_dssp CCEEECCSSCCCSCC-----SCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTT--------TCCCCCEEEEECCSSCCC
T ss_pred CCEEECcCCCCCcCc-----hhhhccccCCCCEEECcCCcCCCcc-ccchhhhc--------cccCCCcCEEEccCCcCC
Confidence 666666666665322 1111112234666777776664211 00000000 002347999999999998
Q ss_pred chhHHHHHHHHhhcccccccccCCCccCchhhhhhhH---HhhhcccCceeeccCCCCCcCCccccccccc--CCCCCcE
Q psy18075 549 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD---AFEENKNLRHLNLNDNTITYKGAIPLGQALS--KLPSLAI 623 (999)
Q Consensus 549 d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~---aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~--~l~sL~~ 623 (999)
.-. ...+..+++|+.|+|++|.|+......+.. .+.++++|+.|+|++|.|+ .++..+. .+++|+.
T Consensus 687 ~lp----~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-----~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 687 KFP----TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-----SLSDDFRATTLPYLSN 757 (876)
T ss_dssp SCC----HHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-----CCCGGGSTTTCTTCCE
T ss_pred ccC----HHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-----cchHHhhhccCCCcCE
Confidence 421 223446899999999999998432111111 1234559999999999998 4667776 8899999
Q ss_pred EEcCCCCCCccchHHHHHhccCCCCCCEEEccC------CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHH
Q psy18075 624 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC------NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 697 (999)
Q Consensus 624 LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~------N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~ 697 (999)
|+|++|.++. ++..+..+++|+.|+|++ |.+.. .++..+..+++|+.|+|++|.|+. ++.
T Consensus 758 L~Ls~N~L~~-----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~----~ip~~l~~L~~L~~L~Ls~N~L~~-----Ip~ 823 (876)
T 4ecn_A 758 MDVSYNCFSS-----FPTQPLNSSQLKAFGIRHQRDAEGNRILR----QWPTGITTCPSLIQLQIGSNDIRK-----VDE 823 (876)
T ss_dssp EECCSSCCSS-----CCCGGGGCTTCCEEECCCCBCTTCCBCCC----CCCTTGGGCSSCCEEECCSSCCCB-----CCS
T ss_pred EEeCCCCCCc-----cchhhhcCCCCCEEECCCCCCcccccccc----cChHHHhcCCCCCEEECCCCCCCc-----cCH
Confidence 9999999973 456677889999999987 55554 356677889999999999999954 333
Q ss_pred HHhcCCCCCEEeCCCCCC
Q psy18075 698 LMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 698 ~L~~l~~L~~L~Ls~N~~ 715 (999)
.+. ++|+.|++++|.-
T Consensus 824 ~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 824 KLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCC--SSSCEEECCSCTT
T ss_pred hhc--CCCCEEECCCCCC
Confidence 322 6899999999865
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.63 E-value=8.7e-17 Score=179.60 Aligned_cols=131 Identities=18% Similarity=0.139 Sum_probs=59.6
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
++|++|+|++|+++. ++..+..+++|++|+|++|.|+. ++..+..+++|+.|+|++|.+.. .++..
T Consensus 183 ~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~----~~p~~ 248 (328)
T 4fcg_A 183 VNLQSLRLEWTGIRS-----LPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALR----NYPPI 248 (328)
T ss_dssp TTCCEEEEEEECCCC-----CCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCC----BCCCC
T ss_pred CCCCEEECcCCCcCc-----chHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchh----hhHHH
Confidence 345555555555441 22334444555555555555542 22334444555555555544432 23334
Q ss_pred ccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCC
Q psy18075 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687 (999)
Q Consensus 615 L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~I 687 (999)
+..+++|+.|+|++|.+... ++..+..+++|+.|+|++|++.. .++..+..+++|+.+++..|.+
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~----~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLT----LPLDIHRLTQLEKLDLRGCVNLS----RLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCB----CCTTGGGCTTCCEEECTTCTTCC----CCCGGGGGSCTTCEEECCGGGS
T ss_pred hcCCCCCCEEECCCCCchhh----cchhhhcCCCCCEEeCCCCCchh----hccHHHhhccCceEEeCCHHHH
Confidence 44445555555555444321 22333444555555555544433 2334444455555555544433
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=1.1e-15 Score=180.62 Aligned_cols=290 Identities=16% Similarity=0.171 Sum_probs=188.4
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhh-cccCCCcc---
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKD-MFTGRMKT--- 449 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~n-l~t~rl~~--- 449 (999)
.++.|++++|.+........ .....+++|+.|++++|.+.+.....+.+.+...++++.+...+ .+.+ +..
T Consensus 197 ~L~~L~L~~n~l~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~-~~~~~~ 271 (549)
T 2z81_A 197 SVRYLELRDTNLARFQFSPL----PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG-LGDFNP 271 (549)
T ss_dssp TBSEEEEESCBCTTCCCCCC----SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC-CSCCCC
T ss_pred cccEEEccCCcccccccccc----chhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc-cccccc
Confidence 56777777777632100000 01123567777777777777777777766555554443322111 1111 000
Q ss_pred --------------------ccchHH--HHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCC
Q psy18075 450 --------------------EIPDAL--RYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 507 (999)
Q Consensus 450 --------------------~ip~~l--~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n 507 (999)
.+|... ..+ ..+.....+|+.|+|++|.++......+.. +++|++|+|++|
T Consensus 272 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l-~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~------l~~L~~L~Ls~N 344 (549)
T 2z81_A 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDL-STVYSLLEKVKRITVENSKVFLVPCSFSQH------LKSLEFLDLSEN 344 (549)
T ss_dssp CTTTCCCCCTTCCEEEEESCBCSCGGGSCCC-CHHHHHSTTCCEEEEESSCCCCCCHHHHHH------CTTCCEEECCSS
T ss_pred cchhhhhhhcccccccccccccchhhhcccc-hhhhhhcccceEEEeccCccccCCHHHHhc------CccccEEEccCC
Confidence 000000 000 001112468999999999998666443322 468999999999
Q ss_pred ccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHh
Q psy18075 508 GLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587 (999)
Q Consensus 508 ~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL 587 (999)
.++....... ...+..++|+.|++++|+++... .....+..+++|++|+|++|+|+. ++..+
T Consensus 345 ~l~~~~~~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~ 406 (549)
T 2z81_A 345 LMVEEYLKNS-----------ACKGAWPSLQTLVLSQNHLRSMQ--KTGEILLTLKNLTSLDISRNTFHP-----MPDSC 406 (549)
T ss_dssp CCCHHHHHHH-----------TCTTSSTTCCEEECTTSCCCCHH--HHHHHGGGCTTCCEEECTTCCCCC-----CCSCC
T ss_pred ccccccccch-----------hhhhccccCcEEEccCCcccccc--cchhhhhcCCCCCEEECCCCCCcc-----CChhh
Confidence 9873221110 01234467999999999998532 223457789999999999999883 55666
Q ss_pred hhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhH
Q psy18075 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDL 667 (999)
Q Consensus 588 ~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L 667 (999)
..+++|++|+|++|.++. +...+ .++|+.|++++|.++.. ...+++|+.|+|++|+|+. +
T Consensus 407 ~~~~~L~~L~Ls~N~l~~-----l~~~~--~~~L~~L~Ls~N~l~~~--------~~~l~~L~~L~Ls~N~l~~-----i 466 (549)
T 2z81_A 407 QWPEKMRFLNLSSTGIRV-----VKTCI--PQTLEVLDVSNNNLDSF--------SLFLPRLQELYISRNKLKT-----L 466 (549)
T ss_dssp CCCTTCCEEECTTSCCSC-----CCTTS--CTTCSEEECCSSCCSCC--------CCCCTTCCEEECCSSCCSS-----C
T ss_pred cccccccEEECCCCCccc-----ccchh--cCCceEEECCCCChhhh--------cccCChhcEEECCCCccCc-----C
Confidence 778899999999999873 33322 25899999999998742 2467999999999999984 2
Q ss_pred HHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCCC
Q psy18075 668 VKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECS 718 (999)
Q Consensus 668 ~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~e 718 (999)
+. ...+++|++|+|++|.++.. ....+..+++|+.|++++|....+
T Consensus 467 p~-~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 467 PD-ASLFPVLLVMKISRNQLKSV----PDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CC-GGGCTTCCEEECCSSCCCCC----CTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CC-cccCccCCEEecCCCccCCc----CHHHHhcCcccCEEEecCCCccCC
Confidence 22 34688999999999999863 344578899999999999986543
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.63 E-value=3.4e-17 Score=181.49 Aligned_cols=204 Identities=14% Similarity=0.137 Sum_probs=158.3
Q ss_pred CCcccEEEecC-CCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 466 GARLVELDLSD-NAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 466 ~~sL~~LdLS~-N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
+++|++|+|++ |.+.......+. .+++|++|+|++|.++..... .+.. .++|++|++++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~------~l~~L~~L~Ls~n~l~~~~p~----~~~~----------l~~L~~L~Ls~ 134 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIA------KLTQLHYLYITHTNVSGAIPD----FLSQ----------IKTLVTLDFSY 134 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGG------GCTTCSEEEEEEECCEEECCG----GGGG----------CTTCCEEECCS
T ss_pred CCCCCeeeCCCCCcccccCChhHh------cCCCCCEEECcCCeeCCcCCH----HHhC----------CCCCCEEeCCC
Confidence 56999999995 888654444442 347999999999998733222 2222 35699999999
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcc-cCceeeccCCCCCcCCcccccccccCCCCCcE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 623 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~-~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~ 623 (999)
|++... ++..+..+++|++|+|++|.|+.. ++..+..++ .|+.|+|++|.+.. .++..+..++ |+.
T Consensus 135 N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~----~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 135 NALSGT----LPPSISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTG----KIPPTFANLN-LAF 201 (313)
T ss_dssp SEEESC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEE----ECCGGGGGCC-CSE
T ss_pred CccCCc----CChHHhcCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeec----cCChHHhCCc-ccE
Confidence 998743 344577799999999999999854 556677777 99999999999875 3444555565 999
Q ss_pred EEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCC
Q psy18075 624 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG 703 (999)
Q Consensus 624 LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~ 703 (999)
|++++|.++.. ++..+..+++|+.|+|++|.++... ..+..+++|++|+|++|.|+.. ++..+..++
T Consensus 202 L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~ 268 (313)
T 1ogq_A 202 VDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFDL-----GKVGLSKNLNGLDLRNNRIYGT----LPQGLTQLK 268 (313)
T ss_dssp EECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCBG-----GGCCCCTTCCEEECCSSCCEEC----CCGGGGGCT
T ss_pred EECcCCcccCc----CCHHHhcCCCCCEEECCCCceeeec-----CcccccCCCCEEECcCCcccCc----CChHHhcCc
Confidence 99999998743 4567778899999999999998532 2367789999999999999753 556788999
Q ss_pred CCCEEeCCCCCC
Q psy18075 704 MAAALVLEDDEG 715 (999)
Q Consensus 704 ~L~~L~Ls~N~~ 715 (999)
+|+.|++++|.-
T Consensus 269 ~L~~L~Ls~N~l 280 (313)
T 1ogq_A 269 FLHSLNVSFNNL 280 (313)
T ss_dssp TCCEEECCSSEE
T ss_pred CCCEEECcCCcc
Confidence 999999999865
No 60
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.63 E-value=1.8e-16 Score=164.75 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=67.5
Q ss_pred ccEEEccCC-CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccc
Q psy18075 537 LKVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 537 Lk~L~Ls~N-~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
|+.|+|++| +|++.|+..|+++|+.+++|+.|+|++|+|++.|+.+|+.+|..++.|++|+|++|.|++.|+..|+++|
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL 122 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST 122 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH
Confidence 555666553 5555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCCCCcEEEcCCC---CCCccchHHHHHhccCCCCCCEEEccCCCC
Q psy18075 616 SKLPSLAILNLGDC---LLKSAGASSIAKYLTDNTTLEDVNLTCNEI 659 (999)
Q Consensus 616 ~~l~sL~~LdLs~N---~L~d~g~~~La~aL~~~~~L~~LdLs~N~I 659 (999)
..+++|++|+|++| .+++.|+..|+.+|..+++|+.|++++|.+
T Consensus 123 ~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 123 LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 55555555555433 344444444555554445555555544443
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.62 E-value=6.1e-16 Score=182.06 Aligned_cols=146 Identities=10% Similarity=0.108 Sum_probs=80.6
Q ss_pred HHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccc-----cCCCCCcEEEcCCCCCC
Q psy18075 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL-----SKLPSLAILNLGDCLLK 632 (999)
Q Consensus 558 ~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL-----~~l~sL~~LdLs~N~L~ 632 (999)
.+..+++|+.|++++|.++...+..+...+. .++|+.|++++|.+.+. ++..+ ..+++|+.+++++|.+.
T Consensus 215 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~----~p~~~~~~~~~~l~~L~~l~l~~n~~~ 289 (520)
T 2z7x_B 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVW-HTTVWYFSISNVKLQGQ----LDFRDFDYSGTSLKALSIHQVVSDVFG 289 (520)
T ss_dssp GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH-TSSCSEEEEEEEEEESC----CCCCCCCCCSCCCCEEEEEEEEECCCC
T ss_pred hhccccchhhccccccccCHHHHHHHHHHhh-hCcccEEEeecccccCc----cccchhhcccccCceeEecccccccee
Confidence 4556677777777777777665555554432 35777777777766531 22222 23333333333333331
Q ss_pred ccchHHHHHh---------------------ccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 633 SAGASSIAKY---------------------LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 633 d~g~~~La~a---------------------L~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
.....+... ...+++|++|++++|.++.. ++..+..+++|+.|+|++|.|+.
T Consensus 290 -~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~-- 362 (520)
T 2z7x_B 290 -FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT----VFENCGHLTELETLILQMNQLKE-- 362 (520)
T ss_dssp -SCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT----TTTTCCCCSSCCEEECCSSCCCB--
T ss_pred -cchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChh----hhhhhccCCCCCEEEccCCccCc--
Confidence 000111111 13456777777777776652 23445566777777777777753
Q ss_pred HHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 692 VEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 692 ~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
...++..+..+++|+.|++++|.-
T Consensus 363 l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 363 LSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp HHHHHHHHTTCTTCCEEECCSSCC
T ss_pred cccchHHHhhCCCCCEEECCCCcC
Confidence 334555666777777777776654
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.62 E-value=4.4e-16 Score=174.68 Aligned_cols=216 Identities=15% Similarity=0.149 Sum_probs=164.5
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
.+++|+.|+|++|.++......+ ..+++|++|+|++|.|+.... ..+.. .++|++|++++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~Ls~n~l~~~~~----~~~~~----------l~~L~~L~L~~ 133 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSF------SSLGSLEHLDLSYNYLSNLSS----SWFKP----------LSSLTFLNLLG 133 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTT------TTCTTCCEEECCSSCCSSCCH----HHHTT----------CTTCSEEECTT
T ss_pred cCCCCCEEECCCCccCccCHhhc------CCCCCCCEEECCCCcCCcCCH----hHhCC----------CccCCEEECCC
Confidence 35799999999999987654444 235799999999999974332 22222 35699999999
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCc-cCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 623 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~-It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~ 623 (999)
|++..... ...+..+++|++|++++|. ++.. ....+..+++|+.|++++|.+.. ..+..+..+++|++
T Consensus 134 n~l~~l~~---~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 134 NPYKTLGE---TSLFSHLTKLQILRVGNMDTFTKI----QRKDFAGLTFLEELEIDASDLQS----YEPKSLKSIQNVSH 202 (353)
T ss_dssp CCCSSSCS---SCSCTTCTTCCEEEEEESSSCCEE----CTTTTTTCCEEEEEEEEETTCCE----ECTTTTTTCSEEEE
T ss_pred CCCcccCc---hhhhccCCCCcEEECCCCcccccc----CHHHccCCCCCCEEECCCCCcCc----cCHHHHhccccCCe
Confidence 99884221 0146678999999999994 6643 23456778999999999999985 24566778999999
Q ss_pred EEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCC
Q psy18075 624 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG 703 (999)
Q Consensus 624 LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~ 703 (999)
|++++|.++... ...+..+++|+.|+|++|.++......+. .......++.++|+++.+++.+...++..+..++
T Consensus 203 L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 203 LILHMKQHILLL----EIFVDVTSSVECLELRDTDLDTFHFSELS-TGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp EEEECSCSTTHH----HHHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred ecCCCCccccch----hhhhhhcccccEEECCCCccccccccccc-cccccchhhccccccccccCcchhhhHHHHhccc
Confidence 999999986322 12233469999999999999876554443 2346788999999999999999999999999999
Q ss_pred CCCEEeCCCCCCC
Q psy18075 704 MAAALVLEDDEGE 716 (999)
Q Consensus 704 ~L~~L~Ls~N~~e 716 (999)
+|+.|++++|.-.
T Consensus 278 ~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 278 GLLELEFSRNQLK 290 (353)
T ss_dssp TCCEEECCSSCCC
T ss_pred CCCEEECCCCCCC
Confidence 9999999998664
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=1.5e-16 Score=175.84 Aligned_cols=190 Identities=19% Similarity=0.196 Sum_probs=132.7
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
.+++|++|+|++|.++..+ ..+..+.. ..+++|++|+|++|+|+..... .++..++|++|++++
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~-~~~~~l~~-~~~~~L~~L~L~~N~l~~~~~~--------------~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRD-AWLAELQQ-WLKPGLKVLSIAQAHSLNFSCE--------------QVRVFPALSTLDLSD 182 (312)
T ss_dssp CSCCCSEEEEESCBCSSSS-SHHHHHHT-TCCTTCCEEEEESCSCCCCCTT--------------TCCCCSSCCEEECCS
T ss_pred cCCCccEEEccCCCCcchh-HHHHHHHH-hhcCCCcEEEeeCCCCccchHH--------------HhccCCCCCEEECCC
Confidence 4578999999999997663 44444321 1235899999999988643322 233456799999999
Q ss_pred CCCCchhHHHHHHHH--hhcccccccccCCCccCchhhhhhh-HHhhhcccCceeeccCCCCCcCCcccccccccCCCCC
Q psy18075 545 NRLENEGAKMLAAVF--KKLKTLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 621 (999)
Q Consensus 545 N~L~d~g~~~L~~~L--~~~~sLe~LdLs~N~It~~g~~~La-~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL 621 (999)
|++... ..+...+ ..+++|++|+|++|.|+..+ .+. ..+..+++|+.|+|++|.++.... ...+..+++|
T Consensus 183 N~l~~~--~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L 255 (312)
T 1wwl_A 183 NPELGE--RGLISALCPLKFPTLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHNSLRDAAG---APSCDWPSQL 255 (312)
T ss_dssp CTTCHH--HHHHHHSCTTSCTTCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTTSCCCSSCC---CSCCCCCTTC
T ss_pred CCcCcc--hHHHHHHHhccCCCCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCCCcCCcccc---hhhhhhcCCC
Confidence 987632 2233334 67889999999999988432 233 334567899999999999886331 1233456789
Q ss_pred cEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 622 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 622 ~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
+.|+|++|.|+. ++..+. ++|+.|+|++|+|+.. + .+..+++|++|+|++|+|++.
T Consensus 256 ~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~~-----p-~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 256 NSLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDRN-----P-SPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CEEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCSC-----C-CTTTSCEEEEEECTTCTTTCC
T ss_pred CEEECCCCccCh-----hhhhcc--CCceEEECCCCCCCCC-----h-hHhhCCCCCEEeccCCCCCCC
Confidence 999999998872 333333 7899999999999863 2 266788999999999998764
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=6.3e-16 Score=168.03 Aligned_cols=237 Identities=22% Similarity=0.210 Sum_probs=172.4
Q ss_pred cEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHH
Q psy18075 376 TKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDAL 455 (999)
Q Consensus 376 ~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l 455 (999)
..++.+++++... +. ...++|++|+|++|.|+.....
T Consensus 14 ~~~~c~~~~l~~i--------p~--~~~~~l~~L~l~~n~i~~~~~~--------------------------------- 50 (285)
T 1ozn_A 14 VTTSCPQQGLQAV--------PV--GIPAASQRIFLHGNRISHVPAA--------------------------------- 50 (285)
T ss_dssp CEEECCSSCCSSC--------CT--TCCTTCSEEECTTSCCCEECTT---------------------------------
T ss_pred eEEEcCcCCcccC--------Cc--CCCCCceEEEeeCCcCCccCHH---------------------------------
Confidence 4577777777422 11 2246899999999998752111
Q ss_pred HHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCc-cCchhhhHHHHHHhhhccCCcCCCCC
Q psy18075 456 RYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG-LGITGCKLLSKALHDCYESSKKEGSP 534 (999)
Q Consensus 456 ~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~-Lt~~g~~~La~~L~~~~~~s~~~g~~ 534 (999)
.+..+++|++|+|++|.++......+. .+++|++|+|++|. ++...... ++..
T Consensus 51 ------~~~~~~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~n~~l~~~~~~~--------------~~~l 104 (285)
T 1ozn_A 51 ------SFRACRNLTILWLHSNVLARIDAAAFT------GLALLEQLDLSDNAQLRSVDPAT--------------FHGL 104 (285)
T ss_dssp ------TTTTCTTCCEEECCSSCCCEECTTTTT------TCTTCCEEECCSCTTCCCCCTTT--------------TTTC
T ss_pred ------HcccCCCCCEEECCCCccceeCHhhcC------CccCCCEEeCCCCCCccccCHHH--------------hcCC
Confidence 112356899999999999876554442 35799999999997 76433222 2234
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
++|++|++++|++.... +..+..+++|++|+|++|.|+... ...+..+++|+.|+|++|.++.- ....
T Consensus 105 ~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~ 172 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELG----PGLFRGLAALQYLYLQDNALQALP----DDTFRDLGNLTHLFLHGNRISSV----PERA 172 (285)
T ss_dssp TTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCEE----CTTT
T ss_pred cCCCEEECCCCcCCEEC----HhHhhCCcCCCEEECCCCcccccC----HhHhccCCCccEEECCCCccccc----CHHH
Confidence 67999999999998643 334677899999999999998642 23466789999999999998841 2234
Q ss_pred ccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh-cHH
Q psy18075 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE-GVE 693 (999)
Q Consensus 615 L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e-g~~ 693 (999)
+..+++|+.|++++|.++... +..+..+++|+.|+|++|.|+.. ....+..+++|+.|+|++|++..+ ...
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVH----PHAFRDLGRLMTLYLFANNLSAL----PTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCSCC----CHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred hcCccccCEEECCCCcccccC----HhHccCcccccEeeCCCCcCCcC----CHHHcccCcccCEEeccCCCccCCCCcH
Confidence 677899999999999998553 45667789999999999999874 335577899999999999998643 233
Q ss_pred HHHHHHhc
Q psy18075 694 EMEKLMKS 701 (999)
Q Consensus 694 ~L~~~L~~ 701 (999)
.+...++.
T Consensus 245 ~~~~~l~~ 252 (285)
T 1ozn_A 245 PLWAWLQK 252 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 34444444
No 65
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.61 E-value=9.1e-16 Score=186.58 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=31.5
Q ss_pred CccEEEccCCCCCchhHHHHHHHHhhcc--cccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCC
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFKKLK--TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 604 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~~~~--sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Ls 604 (999)
+|+.|++++|.+...... .+..++ +|++|+|++|.++... +..+..+++|+.|+|++|.+.
T Consensus 223 ~L~~L~L~~n~l~~~~~~----~~~~l~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNT----TFLGLKWTNLTMLDLSYNNLNVVG----NDSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp CCCEEECTTSCCCEECTT----TTGGGGGSCCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSCCBS
T ss_pred cccEEEccCCcccccChh----HhhccCcCCCCEEECCCCCcCccC----cccccCcccccEeeCCCCccC
Confidence 455555555555443221 222232 3666666666665432 233445666666666666655
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.61 E-value=3.2e-16 Score=181.35 Aligned_cols=207 Identities=22% Similarity=0.228 Sum_probs=125.1
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|+.|+|++|.|.......| ..+++|++|+|++|+|+..... .++.+++|++|+|++|
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~------~~l~~L~~L~L~~n~l~~~~~~--------------~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAF------NGLANLNTLELFDNRLTTIPNG--------------AFVYLSKLKELWLRNN 146 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGG------TTCSSCCEEECCSSCCSSCCTT--------------TSCSCSSCCEEECCSC
T ss_pred CCCCCEEECCCCcCCccChhhc------cCCccCCEEECCCCcCCeeCHh--------------HhhccccCceeeCCCC
Confidence 4577777777777766554444 2345777777777776532211 1223456777777777
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCc-cCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~-It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~L 624 (999)
+|..... ..|..+++|++|+|++|. ++... ...|..+++|+.|+|++|.++. ++ .+..+++|+.|
T Consensus 147 ~i~~~~~----~~~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L~~L 212 (440)
T 3zyj_A 147 PIESIPS----YAFNRIPSLRRLDLGELKRLSYIS----EGAFEGLSNLRYLNLAMCNLRE-----IP-NLTPLIKLDEL 212 (440)
T ss_dssp CCCEECT----TTTTTCTTCCEEECCCCTTCCEEC----TTTTTTCSSCCEEECTTSCCSS-----CC-CCTTCSSCCEE
T ss_pred cccccCH----HHhhhCcccCEeCCCCCCCcceeC----cchhhcccccCeecCCCCcCcc-----cc-ccCCCcccCEE
Confidence 7764321 234556777777777743 43321 1245556777777777777763 22 35566677777
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~ 704 (999)
+|++|.++... +..+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|.|+... ...+..+++
T Consensus 213 ~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~ 280 (440)
T 3zyj_A 213 DLSGNHLSAIR----PGSFQGLMHLQKLWMIQSQIQVIE----RNAFDNLQSLVEINLAHNNLTLLP----HDLFTPLHH 280 (440)
T ss_dssp ECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCEEC----TTSSTTCTTCCEEECTTSCCCCCC----TTTTSSCTT
T ss_pred ECCCCccCccC----hhhhccCccCCEEECCCCceeEEC----hhhhcCCCCCCEEECCCCCCCccC----hhHhccccC
Confidence 77777776432 345556677777777777776532 234556677777777777776522 233456677
Q ss_pred CCEEeCCCCCCCCC
Q psy18075 705 AAALVLEDDEGECS 718 (999)
Q Consensus 705 L~~L~Ls~N~~e~e 718 (999)
|+.|++++|....+
T Consensus 281 L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 281 LERIHLHHNPWNCN 294 (440)
T ss_dssp CCEEECCSSCEECS
T ss_pred CCEEEcCCCCccCC
Confidence 77777777765443
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.61 E-value=5.9e-16 Score=179.14 Aligned_cols=240 Identities=17% Similarity=0.191 Sum_probs=177.0
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+.... ...|..+++|+.|+|++|.|......
T Consensus 65 ~l~~L~L~~n~i~~~~-------~~~~~~l~~L~~L~Ls~n~i~~i~~~------------------------------- 106 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIK-------VNSFKHLRHLEILQLSRNHIRTIEIG------------------------------- 106 (440)
T ss_dssp TCSEEECCSCCCCEEC-------TTTTSSCSSCCEEECCSSCCCEECGG-------------------------------
T ss_pred CCcEEEccCCcCCeeC-------HHHhhCCCCCCEEECCCCcCCccChh-------------------------------
Confidence 6788999999884322 13467889999999999988652111
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+..+++|+.|+|++|.|+......+ ..+++|++|+|++|.|+..... .++.
T Consensus 107 --------~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~N~i~~~~~~--------------~~~~ 158 (440)
T 3zyj_A 107 --------AFNGLANLNTLELFDNRLTTIPNGAF------VYLSKLKELWLRNNPIESIPSY--------------AFNR 158 (440)
T ss_dssp --------GGTTCSSCCEEECCSSCCSSCCTTTS------CSCSSCCEEECCSCCCCEECTT--------------TTTT
T ss_pred --------hccCCccCCEEECCCCcCCeeCHhHh------hccccCceeeCCCCcccccCHH--------------Hhhh
Confidence 11135789999999999986654444 3457999999999998743221 2234
Q ss_pred CCCccEEEccCC-CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 534 PLALKVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 534 ~~sLk~L~Ls~N-~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
.++|+.|+|++| .++.... ..|..+++|++|+|++|.|+.. + .+..+++|+.|+|++|.|+. ..+
T Consensus 159 l~~L~~L~l~~~~~l~~i~~----~~~~~l~~L~~L~L~~n~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~----~~~ 224 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISE----GAFEGLSNLRYLNLAMCNLREI-----P-NLTPLIKLDELDLSGNHLSA----IRP 224 (440)
T ss_dssp CTTCCEEECCCCTTCCEECT----TTTTTCSSCCEEECTTSCCSSC-----C-CCTTCSSCCEEECTTSCCCE----ECT
T ss_pred CcccCEeCCCCCCCcceeCc----chhhcccccCeecCCCCcCccc-----c-ccCCCcccCEEECCCCccCc----cCh
Confidence 467999999985 4553221 2466789999999999999853 2 36778999999999999985 235
Q ss_pred ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc-
Q psy18075 613 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG- 691 (999)
Q Consensus 613 ~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg- 691 (999)
..+..+++|+.|+|++|.++... ..++..+++|+.|+|++|+|+... ...+..+++|+.|+|++|++.-+.
T Consensus 225 ~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 225 GSFQGLMHLQKLWMIQSQIQVIE----RNAFDNLQSLVEINLAHNNLTLLP----HDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TTTTTCTTCCEEECTTCCCCEEC----TTSSTTCTTCCEEECTTSCCCCCC----TTTTSSCTTCCEEECCSSCEECSST
T ss_pred hhhccCccCCEEECCCCceeEEC----hhhhcCCCCCCEEECCCCCCCccC----hhHhccccCCCEEEcCCCCccCCCC
Confidence 67778999999999999998654 356777899999999999998643 334567899999999999986542
Q ss_pred HHHHHHHHhc
Q psy18075 692 VEEMEKLMKS 701 (999)
Q Consensus 692 ~~~L~~~L~~ 701 (999)
...+...++.
T Consensus 297 l~~l~~~~~~ 306 (440)
T 3zyj_A 297 ILWLSWWIKD 306 (440)
T ss_dssp THHHHHHHHT
T ss_pred chHHHHHHHh
Confidence 3344444443
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.61 E-value=7.1e-17 Score=180.34 Aligned_cols=136 Identities=17% Similarity=0.273 Sum_probs=113.3
Q ss_pred HhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHH
Q psy18075 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 638 (999)
Q Consensus 559 L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~ 638 (999)
+..+++|++|+|++|.|+. ++..+..+++|++|+|++|.++. ++..+..+++|+.|+|++|.+...
T Consensus 179 ~~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~---- 244 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIRS-----LPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN---- 244 (328)
T ss_dssp EEESTTCCEEEEEEECCCC-----CCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB----
T ss_pred hccCCCCCEEECcCCCcCc-----chHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh----
Confidence 3458899999999999983 56678889999999999999983 556788899999999999988643
Q ss_pred HHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 639 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 639 La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
++..+..+++|+.|+|++|++.. .++..+..+++|++|+|++|.+.. .++..+..+++|+.+++..+...
T Consensus 245 ~p~~~~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~----~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 245 YPPIFGGRAPLKRLILKDCSNLL----TLPLDIHRLTQLEKLDLRGCVNLS----RLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCTTCCCCCCEEECTTCTTCC----BCCTTGGGCTTCCEEECTTCTTCC----CCCGGGGGSCTTCEEECCGGGSC
T ss_pred hHHHhcCCCCCCEEECCCCCchh----hcchhhhcCCCCCEEeCCCCCchh----hccHHHhhccCceEEeCCHHHHH
Confidence 45667788999999999998765 355567889999999999998776 36778899999999999876443
No 69
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.61 E-value=9.9e-16 Score=186.25 Aligned_cols=113 Identities=22% Similarity=0.219 Sum_probs=68.5
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcC----Cccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYK----GAIP 610 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~----G~~~ 610 (999)
++|+.|++++|++..... ..+..+++|++|+|++|.++.. .+..+..+++|+.|+|++|..... .+..
T Consensus 248 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp SCCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSCCBSEE----CTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred CCCCEEECCCCCcCccCc----ccccCcccccEeeCCCCccCcc----ChhhhcCCCCccEEeccchhhhcccccccccc
Confidence 349999999999885432 3466788999999999998864 234455667777777766543311 1111
Q ss_pred ccc-cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCC
Q psy18075 611 LGQ-ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI 659 (999)
Q Consensus 611 L~~-aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I 659 (999)
+.. .+..+++|+.|++++|.++... ...+..+++|++|+|++|.+
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBCCCC----TTTTTTCTTCCEEECTTCBS
T ss_pred cChhhcccCCCCCEEECCCCccCCCC----hhHhccccCCcEEECCCCch
Confidence 111 3445666666666666665332 23344455666666665543
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.61 E-value=3.5e-16 Score=181.72 Aligned_cols=207 Identities=19% Similarity=0.228 Sum_probs=129.0
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|+.|+|++|.|+......| ..+++|++|+|++|.|+..... .++.+++|++|+|++|
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~--------------~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAF------NGLASLNTLELFDNWLTVIPSG--------------AFEYLSKLRELWLRNN 157 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTT------TTCTTCCEEECCSSCCSBCCTT--------------TSSSCTTCCEEECCSC
T ss_pred CCCCCEEECCCCccCCcChhhc------cCcccCCEEECCCCcCCccChh--------------hhcccCCCCEEECCCC
Confidence 4577778888877765554434 2345778888887777632211 1223456778888877
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCC-ccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N-~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~L 624 (999)
+|.... ...|..+++|+.|+|++| .++... ...+..+++|+.|+|++|.++. ++ .+..+++|+.|
T Consensus 158 ~l~~~~----~~~~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L~~L 223 (452)
T 3zyi_A 158 PIESIP----SYAFNRVPSLMRLDLGELKKLEYIS----EGAFEGLFNLKYLNLGMCNIKD-----MP-NLTPLVGLEEL 223 (452)
T ss_dssp CCCEEC----TTTTTTCTTCCEEECCCCTTCCEEC----TTTTTTCTTCCEEECTTSCCSS-----CC-CCTTCTTCCEE
T ss_pred CcceeC----HhHHhcCCcccEEeCCCCCCccccC----hhhccCCCCCCEEECCCCcccc-----cc-cccccccccEE
Confidence 776432 123555777777777774 344321 1245567777788887777763 22 35567777788
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~ 704 (999)
+|++|.++... +..+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|.|+... ...+..+++
T Consensus 224 ~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~ 291 (452)
T 3zyi_A 224 EMSGNHFPEIR----PGSFHGLSSLKKLWVMNSQVSLIE----RNAFDGLASLVELNLAHNNLSSLP----HDLFTPLRY 291 (452)
T ss_dssp ECTTSCCSEEC----GGGGTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCSCCC----TTSSTTCTT
T ss_pred ECcCCcCcccC----cccccCccCCCEEEeCCCcCceEC----HHHhcCCCCCCEEECCCCcCCccC----hHHhccccC
Confidence 88777776432 345666677777888777776532 234566777778888777776521 233456677
Q ss_pred CCEEeCCCCCCCCC
Q psy18075 705 AAALVLEDDEGECS 718 (999)
Q Consensus 705 L~~L~Ls~N~~e~e 718 (999)
|+.|++++|....+
T Consensus 292 L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 292 LVELHLHHNPWNCD 305 (452)
T ss_dssp CCEEECCSSCEECS
T ss_pred CCEEEccCCCcCCC
Confidence 77777777765443
No 71
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.60 E-value=1e-15 Score=159.03 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=134.0
Q ss_pred HHHHHHHhhcccccccccCCC-ccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCC
Q psy18075 553 KMLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 631 (999)
Q Consensus 553 ~~L~~~L~~~~sLe~LdLs~N-~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L 631 (999)
..+...+...++|++|+|++| .|++.|+..|+.+|..+.+|+.|+|++|.|++.|+..|+++|..+++|++|+|+.|.|
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 357777788899999999986 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchHHHHHhccCCCCCCEEEccCC---CCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCC
Q psy18075 632 KSAGASSIAKYLTDNTTLEDVNLTCN---EISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705 (999)
Q Consensus 632 ~d~g~~~La~aL~~~~~L~~LdLs~N---~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L 705 (999)
++.|+..|+++|..+++|++|+|++| .|++.|+.++++++..+++|+.|+++.|.++. ...++.++..+..+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~--~~~ia~aL~~N~~~ 185 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA--RHRVSEALERNYER 185 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH--HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH--HHHHHHHHHhcchH
Confidence 99999999999999999999999865 78999999999999999999999999887654 34577777766544
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.60 E-value=7.2e-16 Score=179.08 Aligned_cols=229 Identities=18% Similarity=0.163 Sum_probs=171.5
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|++.... ...|..+++|+.|+|++|.|......
T Consensus 76 ~l~~L~L~~n~i~~~~-------~~~~~~l~~L~~L~Ls~n~i~~~~~~------------------------------- 117 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQ-------ADTFRHLHHLEVLQLGRNSIRQIEVG------------------------------- 117 (452)
T ss_dssp TCSEEECCSSCCCEEC-------TTTTTTCTTCCEEECCSSCCCEECTT-------------------------------
T ss_pred CccEEECcCCcCceEC-------HHHcCCCCCCCEEECCCCccCCcChh-------------------------------
Confidence 6788999999884221 23467889999999999988652111
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+..+++|+.|+|++|.|+......+ ..+++|++|+|++|.|+..... .++.
T Consensus 118 --------~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~N~l~~~~~~--------------~~~~ 169 (452)
T 3zyi_A 118 --------AFNGLASLNTLELFDNWLTVIPSGAF------EYLSKLRELWLRNNPIESIPSY--------------AFNR 169 (452)
T ss_dssp --------TTTTCTTCCEEECCSSCCSBCCTTTS------SSCTTCCEEECCSCCCCEECTT--------------TTTT
T ss_pred --------hccCcccCCEEECCCCcCCccChhhh------cccCCCCEEECCCCCcceeCHh--------------HHhc
Confidence 11235689999999999986654434 2357999999999998733221 1234
Q ss_pred CCCccEEEccCC-CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 534 PLALKVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 534 ~~sLk~L~Ls~N-~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
.++|+.|++++| .++.... ..|..+++|+.|+|++|.|+.. ..+..+++|+.|+|++|.+.. ..+
T Consensus 170 l~~L~~L~l~~~~~l~~i~~----~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~----~~~ 235 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISE----GAFEGLFNLKYLNLGMCNIKDM------PNLTPLVGLEELEMSGNHFPE----IRP 235 (452)
T ss_dssp CTTCCEEECCCCTTCCEECT----TTTTTCTTCCEEECTTSCCSSC------CCCTTCTTCCEEECTTSCCSE----ECG
T ss_pred CCcccEEeCCCCCCccccCh----hhccCCCCCCEEECCCCccccc------ccccccccccEEECcCCcCcc----cCc
Confidence 467999999984 4553221 2466789999999999999853 246678999999999999985 335
Q ss_pred ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 613 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 613 ~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
..+..+++|+.|+|++|.++... ..++..+++|+.|+|++|.|+... ...+..+++|+.|+|++|++.-+
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIE----RNAFDGLASLVELNLAHNNLSSLP----HDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCSCCC----TTSSTTCTTCCEEECCSSCEECS
T ss_pred ccccCccCCCEEEeCCCcCceEC----HHHhcCCCCCCEEECCCCcCCccC----hHHhccccCCCEEEccCCCcCCC
Confidence 67788999999999999998544 355677899999999999998633 23456789999999999997654
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=2.6e-16 Score=173.68 Aligned_cols=242 Identities=14% Similarity=0.101 Sum_probs=171.2
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCc
Q psy18075 403 VKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPI 482 (999)
Q Consensus 403 ~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~ 482 (999)
...++.|.+.++.+++.....+...+. .++|++|+|++|.+...
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~------------------------------------~~~L~~L~l~~n~l~~~ 106 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLA------------------------------------YSRLKELTLEDLKITGT 106 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHH------------------------------------HSCCCEEEEESCCCBSC
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcc------------------------------------cCceeEEEeeCCEeccc
Confidence 456899999999998876665543222 24699999999999765
Q ss_pred cHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhc
Q psy18075 483 GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL 562 (999)
Q Consensus 483 gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~ 562 (999)
....+.. ..+++|++|+|++|.++......-...+. .+++|++|+|++|++.... +..+..+
T Consensus 107 ~~~~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~----------~~~~L~~L~Ls~n~l~~~~----~~~~~~l 168 (310)
T 4glp_A 107 MPPLPLE----ATGLALSSLRLRNVSWATGRSWLAELQQW----------LKPGLKVLSIAQAHSPAFS----CEQVRAF 168 (310)
T ss_dssp CCCCSSS----CCCBCCSSCEEESCCCSSTTSSHHHHHTT----------BCSCCCEEEEECCSSCCCC----TTSCCCC
T ss_pred hhhhhhh----ccCCCCCEEEeecccccchhhhhHHHHhh----------hccCCCEEEeeCCCcchhh----HHHhccC
Confidence 5433311 23469999999999998533211111111 2367999999999997532 3456678
Q ss_pred ccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc-ccCCCCCcEEEcCCCCCCccchHHHHH
Q psy18075 563 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA-LSKLPSLAILNLGDCLLKSAGASSIAK 641 (999)
Q Consensus 563 ~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a-L~~l~sL~~LdLs~N~L~d~g~~~La~ 641 (999)
++|++|+|++|++...........+..+++|++|+|++|.++. +..++.. +..+++|++|+|++|.+++.. +.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~----p~ 242 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET--PTGVCAALAAAGVQPHSLDLSHNSLRATV----NP 242 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC--HHHHHHHHHHHTCCCSSEECTTSCCCCCC----CS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc--hHHHHHHHHhcCCCCCEEECCCCCCCccc----hh
Confidence 9999999999997643222222334578999999999999973 2222222 356789999999999998543 22
Q ss_pred hccCC---CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 642 YLTDN---TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 642 aL~~~---~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
.+..+ ++|++|+|++|.|+. ++..+ .++|+.|+|++|.|+.. ..+..+++|+.|++++|.-.+
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~--~~~L~~L~Ls~N~l~~~------~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLEQ-----VPKGL--PAKLRVLDLSSNRLNRA------PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCCS-----CCSCC--CSCCSCEECCSCCCCSC------CCTTSCCCCSCEECSSTTTSC
T ss_pred hHHhccCcCcCCEEECCCCCCCc-----hhhhh--cCCCCEEECCCCcCCCC------chhhhCCCccEEECcCCCCCC
Confidence 33344 799999999999984 23333 37999999999999862 125678999999999997644
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=9.9e-16 Score=181.16 Aligned_cols=169 Identities=15% Similarity=0.170 Sum_probs=91.3
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhh-------------------------------hh
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI-------------------------------TA 582 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~-------------------------------~~ 582 (999)
+.+|+.|++++|.+.+.+...+...+..+++|+.|++++|.+...+- ..
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 301 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCC
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhccc
Confidence 34566666666666666665665555556666666666665433110 00
Q ss_pred hhHHhhhcccCceeeccCCCCCcCCcccccccc-cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCC
Q psy18075 583 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL-SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 661 (999)
Q Consensus 583 La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL-~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~ 661 (999)
+...+...++|+.|++++|.+. .++..+ ..+++|+.|++++|.++.... .-...+..+++|+.|+|++|+|+.
T Consensus 302 l~~~~~~~~~L~~L~l~~n~l~-----~ip~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~ 375 (549)
T 2z81_A 302 LSTVYSLLEKVKRITVENSKVF-----LVPCSFSQHLKSLEFLDLSENLMVEEYL-KNSACKGAWPSLQTLVLSQNHLRS 375 (549)
T ss_dssp CCHHHHHSTTCCEEEEESSCCC-----CCCHHHHHHCTTCCEEECCSSCCCHHHH-HHHTCTTSSTTCCEEECTTSCCCC
T ss_pred chhhhhhcccceEEEeccCccc-----cCCHHHHhcCccccEEEccCCccccccc-cchhhhhccccCcEEEccCCcccc
Confidence 1111222345555555555554 233333 346677777777777653211 001224455677777777777764
Q ss_pred cchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 662 QGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 662 ~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
. ......+..+++|++|+|++|.++. ++..+..+++|+.|++++|.-
T Consensus 376 ~--~~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 376 M--QKTGEILLTLKNLTSLDISRNTFHP-----MPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp H--HHHHHHGGGCTTCCEEECTTCCCCC-----CCSCCCCCTTCCEEECTTSCC
T ss_pred c--ccchhhhhcCCCCCEEECCCCCCcc-----CChhhcccccccEEECCCCCc
Confidence 1 1122345667777777777777653 334455566677777776654
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=3.2e-16 Score=184.61 Aligned_cols=193 Identities=18% Similarity=0.117 Sum_probs=146.7
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|+.|+|++|.|+.... + ..+++|++|+|++|.|+.... .++|+.|++++|
T Consensus 57 l~~L~~L~Ls~N~l~~~~~--l------~~l~~L~~L~Ls~N~l~~l~~-------------------~~~L~~L~L~~N 109 (487)
T 3oja_A 57 FTKLELLNLSSNVLYETLD--L------ESLSTLRTLDLNNNYVQELLV-------------------GPSIETLHAANN 109 (487)
T ss_dssp CTTCCEEECTTSCCEEEEE--C------TTCTTCCEEECCSSEEEEEEE-------------------CTTCCEEECCSS
T ss_pred CCCCCEEEeeCCCCCCCcc--c------ccCCCCCEEEecCCcCCCCCC-------------------CCCcCEEECcCC
Confidence 5689999999999964432 2 345789999999998863221 145999999999
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc-CCCCCcEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS-KLPSLAIL 624 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~-~l~sL~~L 624 (999)
+|+.... ..+++|+.|+|++|.|+.. .+..+..+++|+.|+|++|.++.. .+..+. .+++|+.|
T Consensus 110 ~l~~~~~-------~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 110 NISRVSC-------SRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEIDTV----NFAELAASSDTLEHL 174 (487)
T ss_dssp CCCCEEE-------CCCSSCEEEECCSSCCCSG----GGBCGGGGSSEEEEECTTSCCCEE----EGGGGGGGTTTCCEE
T ss_pred cCCCCCc-------cccCCCCEEECCCCCCCCC----CchhhcCCCCCCEEECCCCCCCCc----ChHHHhhhCCcccEE
Confidence 9886432 2357899999999999864 234566788999999999999853 233333 57899999
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~ 704 (999)
+|++|.|+.. ..+..+++|+.|+|++|.|+.. +..+..+++|+.|+|++|.|+. ++..+..+++
T Consensus 175 ~Ls~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~Ls~N~l~~-----lp~~l~~l~~ 238 (487)
T 3oja_A 175 NLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFM-----GPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQN 238 (487)
T ss_dssp ECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEE-----CGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTT
T ss_pred ecCCCccccc------cccccCCCCCEEECCCCCCCCC-----CHhHcCCCCccEEEecCCcCcc-----cchhhccCCC
Confidence 9999998743 2233578999999999999853 3346778999999999999985 4556778889
Q ss_pred CCEEeCCCCCCC
Q psy18075 705 AAALVLEDDEGE 716 (999)
Q Consensus 705 L~~L~Ls~N~~e 716 (999)
|+.|++++|...
T Consensus 239 L~~L~l~~N~l~ 250 (487)
T 3oja_A 239 LEHFDLRGNGFH 250 (487)
T ss_dssp CCEEECTTCCBC
T ss_pred CCEEEcCCCCCc
Confidence 999999998765
No 76
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.58 E-value=8.1e-17 Score=201.67 Aligned_cols=291 Identities=17% Similarity=0.179 Sum_probs=165.8
Q ss_pred CccEEEeccCCCcCCChhhHHHH-HHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVI-VDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L-~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
.++.|++++|.... .+ +.++..+++|++|+|++|.|....... +..+++|+.+ ++..+++...+|
T Consensus 49 ~L~~LdLs~n~~~~-------~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L---~Ls~n~l~~~~~ 114 (844)
T 3j0a_A 49 QLQLLELGSQYTPL-------TIDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFEL---RLYFCGLSDAVL 114 (844)
T ss_dssp SCSEEEECTTCCCC-------EECTTTTSSCTTCCEEECTTCCCCEECTTS----SCSCSSCCCE---ECTTCCCSSCCS
T ss_pred cCeEEeCCCCCCcc-------ccCHHHhcCCCCCCEEECCCCcCcccCHhH----ccCCcccCEe---eCcCCCCCcccc
Confidence 56778887774310 11 234677788888888888877643332 2334454332 222333333333
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccH-HHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHh-hhcc----
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGV-EGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH-DCYE---- 526 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv-~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~-~~~~---- 526 (999)
.. ..+..+++|++|+|++|.+..... ..+ ..+++|++|+|++|.++......+...-. ....
T Consensus 115 ~~------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~------~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 115 KD------GYFRNLKALTRLDLSKNQIRSLYLHPSF------GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp TT------CCCSSCSSCCEEEEESCCCCCCCCCGGG------GTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred cC------ccccccCCCCEEECCCCcccccccchhH------hhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 21 123346788888888888865432 122 23468888888888876554444443311 0000
Q ss_pred -------CCcCCCCC------CCccEEEccCCCCCchhHHHHHHHHh--------------------------------h
Q psy18075 527 -------SSKKEGSP------LALKVFIAGRNRLENEGAKMLAAVFK--------------------------------K 561 (999)
Q Consensus 527 -------~s~~~g~~------~sLk~L~Ls~N~L~d~g~~~L~~~L~--------------------------------~ 561 (999)
.+...+.. .+|+.|++++|+++......+...+. .
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 00111111 13778888877766544333322211 1
Q ss_pred --cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHH
Q psy18075 562 --LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 639 (999)
Q Consensus 562 --~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~L 639 (999)
.++|+.|+|++|.++.. .+..+..+++|+.|+|++|.+.. ..+.++..+++|+.|+|++|.++...
T Consensus 263 l~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~---- 330 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKINK----IADEAFYGLDNLQVLNLSYNLLGELY---- 330 (844)
T ss_dssp TTTSCCCEEECTTCCCCEE----CSCCSSSCCCCCEEEEESCCCCE----ECTTTTTTCSSCCEEEEESCCCSCCC----
T ss_pred cccCCccEEECCCCccccc----ChhhhhcCCCCCEEECCCCcCCC----CChHHhcCCCCCCEEECCCCCCCccC----
Confidence 14677777777776643 23445566777777777777764 22345566777788888877775332
Q ss_pred HHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 640 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 640 a~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
+..+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|.++.- ..+++|+.|++++|.-
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~i---------~~~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQ----DQTFKFLEKLQTLDLRDNALTTI---------HFIPSIPDIFLSGNKL 393 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCC----SSCSCSCCCCCEEEEETCCSCCC---------SSCCSCSEEEEESCCC
T ss_pred HHHhcCCCCCCEEECCCCCCCccC----hhhhcCCCCCCEEECCCCCCCcc---------cCCCCcchhccCCCCc
Confidence 345566677888888888776532 22456677888888888877642 2255666666665543
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=1.7e-16 Score=175.59 Aligned_cols=215 Identities=17% Similarity=0.124 Sum_probs=155.3
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
..++|++|+|++|.++......+. ...+++|++|+|++|.|+.. ...+...... .+++|++|+|++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~---------~~~~L~~L~L~~ 158 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLL----EATGPDLNILNLRNVSWATR-DAWLAELQQW---------LKPGLKVLSIAQ 158 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSS----SCCSCCCSEEEEESCBCSSS-SSHHHHHHTT---------CCTTCCEEEEES
T ss_pred CcCCccEEEccCCcccchhHHHHH----HhcCCCccEEEccCCCCcch-hHHHHHHHHh---------hcCCCcEEEeeC
Confidence 357999999999999754332220 02347999999999999865 3333332111 125699999999
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHh--hhcccCceeeccCCCCCcCCccccc-ccccCCCCC
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF--EENKNLRHLNLNDNTITYKGAIPLG-QALSKLPSL 621 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL--~~~~~Lr~LdLS~N~Lsd~G~~~L~-~aL~~l~sL 621 (999)
|+++... +..+..+++|++|+|++|.+... ..+...+ ..+++|++|+|++|.|+.. ..++ ..+..+++|
T Consensus 159 N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 159 AHSLNFS----CEQVRVFPALSTLDLSDNPELGE--RGLISALCPLKFPTLQVLALRNAGMETP--SGVCSALAAARVQL 230 (312)
T ss_dssp CSCCCCC----TTTCCCCSSCCEEECCSCTTCHH--HHHHHHSCTTSCTTCCEEECTTSCCCCH--HHHHHHHHHTTCCC
T ss_pred CCCccch----HHHhccCCCCCEEECCCCCcCcc--hHHHHHHHhccCCCCCEEECCCCcCcch--HHHHHHHHhcCCCC
Confidence 9998643 24567789999999999997642 1233333 6789999999999999832 1233 233567899
Q ss_pred cEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhc
Q psy18075 622 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 701 (999)
Q Consensus 622 ~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~ 701 (999)
+.|++++|.++.... ...+...++|+.|+|++|.|+. ++..+. ++|++|+|++|+|+.. +. +..
T Consensus 231 ~~L~Ls~N~l~~~~~---~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~~-----p~-~~~ 294 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAG---APSCDWPSQLNSLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDRN-----PS-PDE 294 (312)
T ss_dssp SEEECTTSCCCSSCC---CSCCCCCTTCCEEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCSC-----CC-TTT
T ss_pred CEEECCCCcCCcccc---hhhhhhcCCCCEEECCCCccCh-----hhhhcc--CCceEEECCCCCCCCC-----hh-Hhh
Confidence 999999999986431 1233446899999999999984 333333 7899999999999873 22 778
Q ss_pred CCCCCEEeCCCCCCCC
Q psy18075 702 FGMAAALVLEDDEGEC 717 (999)
Q Consensus 702 l~~L~~L~Ls~N~~e~ 717 (999)
+++|+.|++++|.-.+
T Consensus 295 l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCEEEEEECTTCTTTC
T ss_pred CCCCCEEeccCCCCCC
Confidence 8999999999997654
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=2.7e-14 Score=157.93 Aligned_cols=170 Identities=21% Similarity=0.286 Sum_probs=114.3
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|+.|+|++|.+..... + ..+++|++|+|++|.++... .+ +.+++|++|++++|
T Consensus 62 l~~L~~L~L~~n~i~~~~~--~------~~l~~L~~L~L~~n~l~~~~------~~----------~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP--L------KNLTKITELELSGNPLKNVS------AI----------AGLQSIKTLDLTST 117 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--G------TTCCSCCEEECCSCCCSCCG------GG----------TTCTTCCEEECTTS
T ss_pred cCCCCEEEccCCcCCCChh--H------ccCCCCCEEEccCCcCCCch------hh----------cCCCCCCEEECCCC
Confidence 4577888888887765543 2 23467888888888776421 11 22355888888888
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
+++... .+..+++|++|+|++|.|+... .+..+++|+.|+|++|.+++ +.. +..+++|+.|+
T Consensus 118 ~l~~~~------~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~-----~~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 118 QITDVT------PLAGLSNLQVLYLDLNQITNIS------PLAGLTNLQYLSIGNAQVSD-----LTP-LANLSKLTTLK 179 (308)
T ss_dssp CCCCCG------GGTTCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEE
T ss_pred CCCCch------hhcCCCCCCEEECCCCccCcCc------cccCCCCccEEEccCCcCCC-----Chh-hcCCCCCCEEE
Confidence 877532 2566778888888888777532 15667778888888887764 222 56677888888
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
+++|.+++... +..+++|++|+|++|+|++.. .+..+++|+.|+|++|+++.
T Consensus 180 l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~------~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 180 ADDNKISDISP------LASLPNLIEVHLKNNQISDVS------PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCG------GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCccCcChh------hcCCCCCCEEEccCCccCccc------cccCCCCCCEEEccCCeeec
Confidence 88887764321 556678888888888877532 25677788888888887755
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=1.4e-14 Score=158.95 Aligned_cols=196 Identities=18% Similarity=0.175 Sum_probs=147.7
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++++.|+|++|.|+......+. .+++|++|+|++|.|+.... .+..++|+.|++++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~----------------~~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLM------PYTRLTQLNLDRAELTKLQV----------------DGTLPVLGTLDLSHNQ 88 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGT------TCTTCCEEECTTSCCCEEEC----------------CSCCTTCCEEECCSSC
T ss_pred CCCCEEEcCCCcCCccCHHHhh------cCCCCCEEECCCCccCcccC----------------CCCCCcCCEEECCCCc
Confidence 4789999999999876655553 34689999999999874321 1245679999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
|+. ++..+..+++|++|+|++|+|+... +..|..+++|+.|+|++|.|+. .....+..+++|+.|+|
T Consensus 89 l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 89 LQS-----LPLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKGNELKT----LPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp CSS-----CCCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEEC
T ss_pred CCc-----CchhhccCCCCCEEECCCCcCcccC----HHHHcCCCCCCEEECCCCCCCc----cChhhcccccCCCEEEC
Confidence 873 3445667889999999999998542 2456778999999999999884 22344567889999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh-cHHHHHHHHhcCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE-GVEEMEKLMKSFGMA 705 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e-g~~~L~~~L~~l~~L 705 (999)
++|.|+... ...+..+++|+.|+|++|+|+. ++..+..+++|+.|+|++|++... +...+...+..++..
T Consensus 156 ~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~~~ 226 (290)
T 1p9a_G 156 ANNNLTELP----AGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAEN 226 (290)
T ss_dssp TTSCCSCCC----TTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGGG
T ss_pred CCCcCCccC----HHHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeEEeCCCCccCcCccHHHHHHHHhCccc
Confidence 999997432 2345667999999999999984 455666778999999999998643 445666777766543
Q ss_pred C
Q psy18075 706 A 706 (999)
Q Consensus 706 ~ 706 (999)
.
T Consensus 227 ~ 227 (290)
T 1p9a_G 227 V 227 (290)
T ss_dssp B
T ss_pred c
Confidence 3
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.55 E-value=1.7e-15 Score=189.82 Aligned_cols=287 Identities=18% Similarity=0.173 Sum_probs=163.6
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+.... +..+..+++|++|+|++|.+..... ..++..+++|+.+ ++..+++....|.
T Consensus 25 ~l~~LdLs~N~i~~i~-------~~~~~~l~~L~~LdLs~n~~~~~i~---~~~f~~L~~L~~L---~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVT-------ASSFPFLEQLQLLELGSQYTPLTID---KEAFRNLPNLRIL---DLGSSKIYFLHPD 91 (844)
T ss_dssp TCCEEEEESCCCCEEC-------SSSCSSCCSCSEEEECTTCCCCEEC---TTTTSSCTTCCEE---ECTTCCCCEECTT
T ss_pred CcCEEECCCCcCCccC-------hhHCcccccCeEEeCCCCCCccccC---HHHhcCCCCCCEE---ECCCCcCcccCHh
Confidence 7889999999984221 2347889999999999995432210 1223445555433 3333444444444
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+ ..+++|++|+|++|.+....... ..+ ..+++|++|+|++|.++.... ...+ +.
T Consensus 92 ~~--------~~l~~L~~L~Ls~n~l~~~~~~~--~~~--~~L~~L~~L~Ls~N~l~~~~~---~~~~----------~~ 146 (844)
T 3j0a_A 92 AF--------QGLFHLFELRLYFCGLSDAVLKD--GYF--RNLKALTRLDLSKNQIRSLYL---HPSF----------GK 146 (844)
T ss_dssp SS--------CSCSSCCCEECTTCCCSSCCSTT--CCC--SSCSSCCEEEEESCCCCCCCC---CGGG----------GT
T ss_pred Hc--------cCCcccCEeeCcCCCCCcccccC--ccc--cccCCCCEEECCCCccccccc---chhH----------hh
Confidence 33 34679999999999997533221 001 345799999999999864321 1112 23
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCc------------------------------hhhhhh
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYH------------------------------VGITAL 583 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~------------------------------~g~~~L 583 (999)
+++|++|+|++|.+.......+... . .++|+.|+|++|.++. .....+
T Consensus 147 L~~L~~L~Ls~N~i~~~~~~~l~~l-~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIFLVCEHELEPL-Q-GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp CSSCCEEEEESSCCCCCCSGGGHHH-H-HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred CCCCCEEECCCCcCCeeCHHHcccc-c-CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 4679999999998876433333221 1 1445555555444443 222222
Q ss_pred hHHhh--------------------------------h--cccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCC
Q psy18075 584 SDAFE--------------------------------E--NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC 629 (999)
Q Consensus 584 a~aL~--------------------------------~--~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N 629 (999)
...+. . .++|+.|+|++|.+.. ..+..+..+++|+.|+|++|
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n 300 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS----LNSRVFETLKDLKVLNLAYN 300 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE----ECSCCSSSCCCCCEEEEESC
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc----cChhhhhcCCCCCEEECCCC
Confidence 21110 0 1345555555555542 12334455666666666666
Q ss_pred CCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEe
Q psy18075 630 LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALV 709 (999)
Q Consensus 630 ~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~ 709 (999)
.++... +.++..+++|+.|+|++|.++.. ....+..+++|+.|+|++|.|+... ...+..+++|+.|+
T Consensus 301 ~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 301 KINKIA----DEAFYGLDNLQVLNLSYNLLGEL----YSSNFYGLPKVAYIDLQKNHIAIIQ----DQTFKFLEKLQTLD 368 (844)
T ss_dssp CCCEEC----TTTTTTCSSCCEEEEESCCCSCC----CSCSCSSCTTCCEEECCSCCCCCCC----SSCSCSCCCCCEEE
T ss_pred cCCCCC----hHHhcCCCCCCEEECCCCCCCcc----CHHHhcCCCCCCEEECCCCCCCccC----hhhhcCCCCCCEEE
Confidence 665332 23455566777777777766542 1234556677777777777765522 22356677777777
Q ss_pred CCCCCCC
Q psy18075 710 LEDDEGE 716 (999)
Q Consensus 710 Ls~N~~e 716 (999)
+++|.-.
T Consensus 369 Ls~N~l~ 375 (844)
T 3j0a_A 369 LRDNALT 375 (844)
T ss_dssp EETCCSC
T ss_pred CCCCCCC
Confidence 7777544
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=1.9e-15 Score=163.54 Aligned_cols=198 Identities=21% Similarity=0.203 Sum_probs=119.8
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|++|+|++|.++......+ ..+++|++|+|++|.++...... ++..++|++|++++|
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~~--------------~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAY------QSLSHLSTLILTGNPIQSLALGA--------------FSGLSSLQKLVAVET 110 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTT------TTCTTCCEEECTTCCCCEECTTT--------------TTTCTTCCEEECTTS
T ss_pred ccCCcEEECCCCcCCccCHHHc------cCCcCCCEEECCCCccCccChhh--------------hcCCccccEEECCCC
Confidence 4578888888888765544333 23467888888888776332211 223356888888888
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCc-EE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA-IL 624 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~-~L 624 (999)
++...... .+..+++|++|+|++|.|+..+ ++..+..+++|++|+|++|.++......+. .+..++.|. .|
T Consensus 111 ~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~l~l~L 182 (276)
T 2z62_A 111 NLASLENF----PIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSL 182 (276)
T ss_dssp CCCCSTTC----CCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCTTCCEEE
T ss_pred CccccCch----hcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcCCHHHhh-hhhhccccceee
Confidence 77643221 2555777888888888776532 345666677888888888877643222221 122333333 77
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc--HHHHHHHHh
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG--VEEMEKLMK 700 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg--~~~L~~~L~ 700 (999)
++++|.++... .......+|+.|+|++|.|+... ...+..+++|+.|+|++|++.... ...+..++.
T Consensus 183 ~ls~n~l~~~~-----~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~ 251 (276)
T 2z62_A 183 DLSLNPMNFIQ-----PGAFKEIRLKELALDTNQLKSVP----DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 251 (276)
T ss_dssp ECCSSCCCEEC-----TTSSCSCCEEEEECCSSCCSCCC----TTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred ecCCCcccccC-----ccccCCCcccEEECCCCceeecC----HhHhcccccccEEEccCCcccccCCchHHHHHHHH
Confidence 88888776432 22223357888888888777532 233456778888888888776532 334444443
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=3.8e-14 Score=156.67 Aligned_cols=191 Identities=18% Similarity=0.223 Sum_probs=154.4
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|++|++++|.+.... .+ ..+++|++|+|++|.++.... +. .+++|++|++++|+
T Consensus 41 ~~L~~L~l~~~~i~~l~--~~------~~l~~L~~L~L~~n~i~~~~~------~~----------~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE--GV------QYLNNLIGLELKDNQITDLAP------LK----------NLTKITELELSGNP 96 (308)
T ss_dssp HTCCEEECTTSCCCCCT--TG------GGCTTCCEEECCSSCCCCCGG------GT----------TCCSCCEEECCSCC
T ss_pred CCcCEEEeeCCCccCch--hh------hccCCCCEEEccCCcCCCChh------Hc----------cCCCCCEEEccCCc
Confidence 58999999999997643 22 235799999999999975332 22 23679999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
++.. ..+..+++|++|+|++|.|+.. ..+..+++|+.|+|++|.++.. .. +..+++|+.|++
T Consensus 97 l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~~-----~~-l~~l~~L~~L~l 158 (308)
T 1h6u_A 97 LKNV------SAIAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQITNI-----SP-LAGLTNLQYLSI 158 (308)
T ss_dssp CSCC------GGGTTCTTCCEEECTTSCCCCC------GGGTTCTTCCEEECCSSCCCCC-----GG-GGGCTTCCEEEC
T ss_pred CCCc------hhhcCCCCCCEEECCCCCCCCc------hhhcCCCCCCEEECCCCccCcC-----cc-ccCCCCccEEEc
Confidence 9863 2477789999999999999863 2377899999999999999842 22 667899999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 706 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~ 706 (999)
++|.+++.. . +..+++|+.|+|++|.|+.... +..+++|++|+|++|.++... .+..+++|+
T Consensus 159 ~~n~l~~~~-----~-l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~------~l~~l~~L~ 220 (308)
T 1h6u_A 159 GNAQVSDLT-----P-LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVS------PLANTSNLF 220 (308)
T ss_dssp CSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCG------GGTTCTTCC
T ss_pred cCCcCCCCh-----h-hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCccc------cccCCCCCC
Confidence 999998532 2 6778999999999999987432 678999999999999998743 378899999
Q ss_pred EEeCCCCCCCC
Q psy18075 707 ALVLEDDEGEC 717 (999)
Q Consensus 707 ~L~Ls~N~~e~ 717 (999)
.|++++|.-..
T Consensus 221 ~L~l~~N~i~~ 231 (308)
T 1h6u_A 221 IVTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEccCCeeec
Confidence 99999886543
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=5.4e-15 Score=159.89 Aligned_cols=212 Identities=19% Similarity=0.215 Sum_probs=159.2
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|++|+|++|.++..+...+. .+++|++|+|++|.++...... ++..++|++|++++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~--------------~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFF------SFPELQVLDLSRCEIQTIEDGA--------------YQSLSHLSTLILTGNP 87 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTT------TCTTCSEEECTTCCCCEECTTT--------------TTTCTTCCEEECTTCC
T ss_pred CCccEEECCCCcccccCHhHhc------cccCCcEEECCCCcCCccCHHH--------------ccCCcCCCEEECCCCc
Confidence 4799999999999877654442 3479999999999987433222 2234679999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
++.... ..+..+++|++|++++|.++.... ..+..+++|++|+|++|.++..+ ++..+..+++|+.|++
T Consensus 88 l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 88 IQSLAL----GAFSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDL 156 (276)
T ss_dssp CCEECT----TTTTTCTTCCEEECTTSCCCCSTT----CCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEEC
T ss_pred cCccCh----hhhcCCccccEEECCCCCccccCc----hhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEEC
Confidence 986432 346678999999999999986432 24667899999999999998532 4567778999999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCC-EEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLE-DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~-~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L 705 (999)
++|.++......+.. +...+.|. .|++++|.|+... .......+|+.|+|++|.++... ...+..+++|
T Consensus 157 s~N~l~~~~~~~~~~-l~~L~~l~l~L~ls~n~l~~~~-----~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L 226 (276)
T 2z62_A 157 SSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQ-----PGAFKEIRLKELALDTNQLKSVP----DGIFDRLTSL 226 (276)
T ss_dssp CSSCCCEECGGGGHH-HHTCTTCCEEEECCSSCCCEEC-----TTSSCSCCEEEEECCSSCCSCCC----TTTTTTCCSC
T ss_pred CCCCCCcCCHHHhhh-hhhccccceeeecCCCcccccC-----ccccCCCcccEEECCCCceeecC----HhHhcccccc
Confidence 999998765433433 33344444 8999999998632 22234458999999999998632 2346789999
Q ss_pred CEEeCCCCCCCCCC
Q psy18075 706 AALVLEDDEGECSD 719 (999)
Q Consensus 706 ~~L~Ls~N~~e~ed 719 (999)
+.|++++|.-..+-
T Consensus 227 ~~L~l~~N~~~c~c 240 (276)
T 2z62_A 227 QKIWLHTNPWDCSC 240 (276)
T ss_dssp CEEECCSSCBCCCT
T ss_pred cEEEccCCcccccC
Confidence 99999999876544
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=1.1e-14 Score=159.78 Aligned_cols=204 Identities=19% Similarity=0.121 Sum_probs=159.6
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
..++++++++++|.++..... + .++|+.|+|++|.|+......+. ..++|+.|+|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~-~--------~~~l~~L~L~~N~l~~~~~~~~~--------------~l~~L~~L~L~~ 64 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPD-L--------PKDTTILHLSENLLYTFSLATLM--------------PYTRLTQLNLDR 64 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSC-C--------CTTCCEEECTTSCCSEEEGGGGT--------------TCTTCCEEECTT
T ss_pred ccCCccEEECCCCCCCcCCCC-C--------CCCCCEEEcCCCcCCccCHHHhh--------------cCCCCCEEECCC
Confidence 457899999999999765421 1 14899999999999754332222 236799999999
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~L 624 (999)
|.|+.... ...+++|++|+|++|.|+. ++..+..+++|+.|+|++|.|+.- .+..+..+++|+.|
T Consensus 65 n~l~~~~~------~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l----~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 65 AELTKLQV------DGTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQEL 129 (290)
T ss_dssp SCCCEEEC------CSCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCC----CSSTTTTCTTCCEE
T ss_pred CccCcccC------CCCCCcCCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCccc----CHHHHcCCCCCCEE
Confidence 99986432 1467899999999999983 556677889999999999999842 23567788999999
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~ 704 (999)
+|++|.++... +..+..+++|+.|+|++|+|+.-. ...+..+++|+.|+|++|.|+. ++..+..+..
T Consensus 130 ~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~ 196 (290)
T 1p9a_G 130 YLKGNELKTLP----PGLLTPTPKLEKLSLANNNLTELP----AGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHL 196 (290)
T ss_dssp ECTTSCCCCCC----TTTTTTCTTCCEEECTTSCCSCCC----TTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCC
T ss_pred ECCCCCCCccC----hhhcccccCCCEEECCCCcCCccC----HHHhcCcCCCCEEECCCCcCCc-----cChhhccccc
Confidence 99999998432 345667799999999999998632 2345678999999999999985 5566677889
Q ss_pred CCEEeCCCCCCCCCC
Q psy18075 705 AAALVLEDDEGECSD 719 (999)
Q Consensus 705 L~~L~Ls~N~~e~ed 719 (999)
|+.|++++|....+.
T Consensus 197 L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 197 LPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSEEECCSCCBCCSG
T ss_pred CCeEEeCCCCccCcC
Confidence 999999999886654
No 85
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.52 E-value=7.6e-14 Score=163.10 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=23.2
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCCh
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGV 418 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~ 418 (999)
.++.|+++++.+.-. + .+..+++|++|+|++|.|..
T Consensus 43 ~L~~L~Ls~n~l~~~--------~-~l~~l~~L~~L~Ls~n~l~~ 78 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM--------T-GIEKLTGLTKLICTSNNITT 78 (457)
T ss_dssp TCCEEECCSSCCCCC--------T-TGGGCTTCSEEECCSSCCSC
T ss_pred CCCEEEccCCCcccC--------h-hhcccCCCCEEEccCCcCCe
Confidence 456677777776311 1 35667777777777777655
No 86
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.50 E-value=7.8e-14 Score=162.98 Aligned_cols=226 Identities=17% Similarity=0.155 Sum_probs=134.9
Q ss_pred HhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCC
Q psy18075 400 INEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAF 479 (999)
Q Consensus 400 L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L 479 (999)
+..+++|++|+|++|.|.... .+..+++|+.+ ++..+++.. +| +..+++|++|+|++|.|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L---~Ls~n~l~~-~~----------~~~l~~L~~L~Ls~N~l 97 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT------GIEKLTGLTKL---ICTSNNITT-LD----------LSQNTNLTYLACDSNKL 97 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT------TGGGCTTCSEE---ECCSSCCSC-CC----------CTTCTTCSEEECCSSCC
T ss_pred hhHcCCCCEEEccCCCcccCh------hhcccCCCCEE---EccCCcCCe-Ec----------cccCCCCCEEECcCCCC
Confidence 455689999999999998631 23344444332 222222221 11 22356777777777777
Q ss_pred CCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHH
Q psy18075 480 GPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVF 559 (999)
Q Consensus 480 ~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L 559 (999)
+... + ..+++|++|+|++|.++... ++..++|++|++++|+++.. .+
T Consensus 98 ~~~~---~------~~l~~L~~L~L~~N~l~~l~-----------------~~~l~~L~~L~l~~N~l~~l-------~l 144 (457)
T 3bz5_A 98 TNLD---V------TPLTKLTYLNCDTNKLTKLD-----------------VSQNPLLTYLNCARNTLTEI-------DV 144 (457)
T ss_dssp SCCC---C------TTCTTCCEEECCSSCCSCCC-----------------CTTCTTCCEEECTTSCCSCC-------CC
T ss_pred ceee---c------CCCCcCCEEECCCCcCCeec-----------------CCCCCcCCEEECCCCcccee-------cc
Confidence 6543 1 23456777777777765321 12235577777777777642 14
Q ss_pred hhcccccccccCCCc-cCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHH
Q psy18075 560 KKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 638 (999)
Q Consensus 560 ~~~~sLe~LdLs~N~-It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~ 638 (999)
..+++|++|++++|. ++.. .+..+++|+.|+|++|.++. +. +..+++|+.|++++|.++..
T Consensus 145 ~~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n~l~~-----l~--l~~l~~L~~L~l~~N~l~~~---- 206 (457)
T 3bz5_A 145 SHNTQLTELDCHLNKKITKL-------DVTPQTQLTTLDCSFNKITE-----LD--VSQNKLLNRLNCDTNNITKL---- 206 (457)
T ss_dssp TTCTTCCEEECTTCSCCCCC-------CCTTCTTCCEEECCSSCCCC-----CC--CTTCTTCCEEECCSSCCSCC----
T ss_pred ccCCcCCEEECCCCCccccc-------ccccCCcCCEEECCCCccce-----ec--cccCCCCCEEECcCCcCCee----
Confidence 556677777777773 3322 24456677777777777763 22 45667777777777777642
Q ss_pred HHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCC
Q psy18075 639 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 639 La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
.+..+++|+.|++++|+++.- + +..+++|+.|++++|.++... +..+++|+.|+++.+
T Consensus 207 ---~l~~l~~L~~L~Ls~N~l~~i-----p--~~~l~~L~~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 207 ---DLNQNIQLTFLDCSSNKLTEI-----D--VTPLTQLTYFDCSVNPLTELD-------VSTLSKLTTLHCIQT 264 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCSCC-----C--CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECTTC
T ss_pred ---ccccCCCCCEEECcCCccccc-----C--ccccCCCCEEEeeCCcCCCcC-------HHHCCCCCEEeccCC
Confidence 255567777777777777652 1 556777777777777776531 344556666655544
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.49 E-value=5.2e-14 Score=152.15 Aligned_cols=194 Identities=24% Similarity=0.266 Sum_probs=136.3
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|++|+|++|.|+......+ ..+++|++|+|++|.|+...... ++..++|++|++++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~i~~~~--------------~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAF------HRLTKLRLLYLNDNKLQTLPAGI--------------FKELKNLETLWVTDNK 96 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSS------SSCTTCCEEECCSSCCSCCCTTT--------------TSSCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCeeCHHHh------cCCCCCCEEECCCCccCeeChhh--------------hcCCCCCCEEECCCCc
Confidence 478899999999876654434 33578999999999886322111 1234669999999998
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
+..... ..+..+++|++|+|++|.|+... +..+..+++|++|+|++|.+..- ....+..+++|+.|+|
T Consensus 97 l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 97 LQALPI----GVFDQLVNLAELRLDRNQLKSLP----PRVFDSLTKLTYLSLGYNELQSL----PKGVFDKLTSLKELRL 164 (270)
T ss_dssp CCCCCT----TTTTTCSSCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEEC
T ss_pred CCcCCH----hHcccccCCCEEECCCCccCeeC----HHHhCcCcCCCEEECCCCcCCcc----CHhHccCCcccceeEe
Confidence 875332 24566788999999999887643 33456788899999999988742 2234567889999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh--cHHHHHHHHh
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GVEEMEKLMK 700 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e--g~~~L~~~L~ 700 (999)
++|.++.... ..+..+++|++|+|++|.|+... ...+..+++|+.|+|++|++... +...+...+.
T Consensus 165 ~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~ 232 (270)
T 2o6q_A 165 YNNQLKRVPE----GAFDKLTELKTLKLDNNQLKRVP----EGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLK 232 (270)
T ss_dssp CSSCCSCCCT----TTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHH
T ss_pred cCCcCcEeCh----hHhccCCCcCEEECCCCcCCcCC----HHHhccccCCCEEEecCCCeeCCCccHHHHHHHHH
Confidence 9998875432 34666788999999999887633 23456788899999999987654 2344444443
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=3.2e-14 Score=153.80 Aligned_cols=206 Identities=23% Similarity=0.282 Sum_probs=157.3
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
..++.++++++.++..... + .++|++|+|++|+|+..... .++..++|++|++++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~-~--------~~~l~~L~l~~n~l~~~~~~--------------~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSN-I--------PADTKKLDLQSNKLSSLPSK--------------AFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp TTTTEEECTTSCCSSCCSC-C--------CTTCSEEECCSSCCSCCCTT--------------SSSSCTTCCEEECCSSC
T ss_pred CCCCEEEccCCCCCccCCC-C--------CCCCCEEECcCCCCCeeCHH--------------HhcCCCCCCEEECCCCc
Confidence 3578999999999765421 1 14799999999998743321 23345779999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
++... ...+..+++|++|+|++|.|+... ...+..+++|++|+|++|.+... ....+..+++|+.|+|
T Consensus 73 l~~i~----~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 73 LQTLP----AGIFKELKNLETLWVTDNKLQALP----IGVFDQLVNLAELRLDRNQLKSL----PPRVFDSLTKLTYLSL 140 (270)
T ss_dssp CSCCC----TTTTSSCTTCCEEECCSSCCCCCC----TTTTTTCSSCCEEECCSSCCCCC----CTTTTTTCTTCCEEEC
T ss_pred cCeeC----hhhhcCCCCCCEEECCCCcCCcCC----HhHcccccCCCEEECCCCccCee----CHHHhCcCcCCCEEEC
Confidence 87432 223566899999999999998643 23556789999999999999852 2345677899999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 706 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~ 706 (999)
++|.++... ...+..+++|+.|+|++|.|+.... ..+..+++|++|+|++|.|+... ...+..+++|+
T Consensus 141 s~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~ 208 (270)
T 2o6q_A 141 GYNELQSLP----KGVFDKLTSLKELRLYNNQLKRVPE----GAFDKLTELKTLKLDNNQLKRVP----EGAFDSLEKLK 208 (270)
T ss_dssp CSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCC
T ss_pred CCCcCCccC----HhHccCCcccceeEecCCcCcEeCh----hHhccCCCcCEEECCCCcCCcCC----HHHhccccCCC
Confidence 999998543 2346678999999999999987432 34677899999999999998632 23567889999
Q ss_pred EEeCCCCCCCCCC
Q psy18075 707 ALVLEDDEGECSD 719 (999)
Q Consensus 707 ~L~Ls~N~~e~ed 719 (999)
.|++++|....+.
T Consensus 209 ~L~l~~N~~~c~c 221 (270)
T 2o6q_A 209 MLQLQENPWDCTC 221 (270)
T ss_dssp EEECCSSCBCCSS
T ss_pred EEEecCCCeeCCC
Confidence 9999999866544
No 89
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.48 E-value=4.2e-14 Score=167.63 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=54.6
Q ss_pred HHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcch
Q psy18075 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGG 664 (999)
Q Consensus 585 ~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~ 664 (999)
..+..+++|+.|++++|.+. .++..+..+ +|+.|++++|.++.... ..+++|+.|++++|.+.....
T Consensus 276 ~~~~~l~~L~~L~l~~~~l~-----~l~~~~~~~-~L~~L~l~~n~~~~l~~-------~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTIE-----RVKDFSYNF-GWQHLELVNCKFGQFPT-------LKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp TTTGGGTTCSEEEEESCEEC-----SCCBCCSCC-CCSEEEEESCBCSSCCB-------CBCSSCCEEEEESCBSCCBCC
T ss_pred hhhcCcCcccEEEecCccch-----hhhhhhccC-CccEEeeccCcccccCc-------ccccccCEEeCcCCccccccc
Confidence 34455677777777777765 244445555 67777777776652211 123455555555554443211
Q ss_pred hhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCC
Q psy18075 665 LDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 665 ~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
...+++|+.|++++|.++..+. +...+..+++|+.|++++|
T Consensus 343 ------~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 343 ------EVDLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFN 383 (570)
T ss_dssp ------CCBCTTCCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSC
T ss_pred ------cccCCCCCEEeCcCCccCcccc--ccccccccCccCEEECCCC
Confidence 0344555555555555543210 1122344455555555544
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.47 E-value=1.2e-14 Score=173.40 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=73.3
Q ss_pred ccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 611 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 611 L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
++..+..+++|+.|+|++|.|+.. .+..+..+++|+.|+|++|+|+.-. ...+..+++|++|+|++|+|+..
T Consensus 486 ~~~~~~~l~~L~~L~Ls~N~L~~l----~~~~f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVLNMSHNNFFSLD----TFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTSCCCBCC----CGGGTTCTTCCEEECTTSCCCBC
T ss_pred CchhhhhccccCEEECCCCccCCc----ChHHHcCCCCCCEEECCCCcCCCCC----hhHHhCCCCCCEEECCCCcCCCC
Confidence 345667788999999999988743 2456777889999999999887632 33567788999999999998763
Q ss_pred cHHHHHHHHhcC-CCCCEEeCCCCCCCCCCc
Q psy18075 691 GVEEMEKLMKSF-GMAAALVLEDDEGECSDE 720 (999)
Q Consensus 691 g~~~L~~~L~~l-~~L~~L~Ls~N~~e~edE 720 (999)
....+..+ ++|+.|++++|....+-+
T Consensus 558 ----~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 558 ----KKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp ----CSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred ----CHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 23345555 579999999998877654
No 91
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.47 E-value=3.5e-13 Score=163.36 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=58.7
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
++|+.|++++|+|+.-. . ..++|+.|++++|.|+.. +. ..++|+.|+|++|.|+. ++
T Consensus 181 ~~L~~L~Ls~N~l~~l~-----~---~~~~L~~L~L~~N~l~~l-----~~---~~~~L~~L~Ls~N~L~~-----lp-- 237 (622)
T 3g06_A 181 SGLQELSVSDNQLASLP-----T---LPSELYKLWAYNNRLTSL-----PA---LPSGLKELIVSGNRLTS-----LP-- 237 (622)
T ss_dssp TTCCEEECCSSCCSCCC-----C---CCTTCCEEECCSSCCSSC-----CC---CCTTCCEEECCSSCCSC-----CC--
T ss_pred CCCcEEECCCCCCCCCC-----C---ccchhhEEECcCCccccc-----CC---CCCCCCEEEccCCccCc-----CC--
Confidence 34555555555554210 0 124555555555555531 11 12456666666665552 22
Q ss_pred ccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 615 L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
..+++|+.|+|++|.|+.. +. ..++|+.|+|++|.|+. ++..+..+++|+.|+|++|+++..
T Consensus 238 -~~l~~L~~L~Ls~N~L~~l-----p~---~~~~L~~L~Ls~N~L~~-----lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTSL-----PM---LPSGLLSLSVYRNQLTR-----LPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCCS-----CCGGGGGSCTTCEEECCSCCCCHH
T ss_pred -CCCCcCcEEECCCCCCCcC-----Cc---ccccCcEEeCCCCCCCc-----CCHHHhhccccCEEEecCCCCCCc
Confidence 2334566666666655421 11 23556666666665552 233455556666666666666553
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.45 E-value=1.7e-13 Score=163.43 Aligned_cols=266 Identities=16% Similarity=0.155 Sum_probs=175.3
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.+++++|.. ...........+...+.|+.|+|+++.+.......+...+. .++++.+. +..+++.+.+|.
T Consensus 222 ~L~~L~l~~n~~---~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~-~~~L~~L~---l~~n~l~~~ip~ 294 (562)
T 3a79_B 222 HLQLSNIKLNDE---NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW-PRPVEYLN---IYNLTITERIDR 294 (562)
T ss_dssp EEEEEEEECCST---THHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT-TSSEEEEE---EEEEEECSCCCC
T ss_pred eEEEeccccccc---ccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh-cccccEEE---EeccEeeccccc
Confidence 345566666543 23344455566777788888888887777766665555443 22332221 111122222222
Q ss_pred HH-------------------------HHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCc
Q psy18075 454 AL-------------------------RYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508 (999)
Q Consensus 454 ~l-------------------------~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~ 508 (999)
.+ ..+...+ ...+|+.|++++|.+.+.... ..+++|++|+|++|.
T Consensus 295 ~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~--------~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF--AEMNIKMLSISDTPFIHMVCP--------PSPSSFTFLNFTQNV 364 (562)
T ss_dssp CCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH--HTCCCSEEEEESSCCCCCCCC--------SSCCCCCEEECCSSC
T ss_pred hhhhcccccchheehhhcccceeecChhhhhhhh--ccCcceEEEccCCCcccccCc--------cCCCCceEEECCCCc
Confidence 11 1111111 124688888888887654310 235789999999999
Q ss_pred cCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhh
Q psy18075 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 588 (999)
Q Consensus 509 Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~ 588 (999)
++..... .++..++|+.|++++|+++.- ..++..+..+++|++|+|++|.|+...- ...+.
T Consensus 365 l~~~~~~--------------~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~ 425 (562)
T 3a79_B 365 FTDSVFQ--------------GCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSHAY---DRTCA 425 (562)
T ss_dssp CCTTTTT--------------TCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSCCBSCCS---SCCCC
T ss_pred cccchhh--------------hhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCcCCCccC---hhhhc
Confidence 8742221 223457799999999999853 2355667889999999999999986211 12355
Q ss_pred hcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHH
Q psy18075 589 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV 668 (999)
Q Consensus 589 ~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~ 668 (999)
.+++|+.|+|++|.+++. ++..+. ++|+.|+|++|.++. ++..+..+++|+.|+|++|+|+.-...
T Consensus 426 ~l~~L~~L~l~~n~l~~~----~~~~l~--~~L~~L~L~~N~l~~-----ip~~~~~l~~L~~L~L~~N~l~~l~~~--- 491 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGS----VFRCLP--PKVKVLDLHNNRIMS-----IPKDVTHLQALQELNVASNQLKSVPDG--- 491 (562)
T ss_dssp CCTTCCEEECCSSCCCGG----GGSSCC--TTCSEEECCSSCCCC-----CCTTTTSSCCCSEEECCSSCCCCCCTT---
T ss_pred CcccCCEEECCCCCCCcc----hhhhhc--CcCCEEECCCCcCcc-----cChhhcCCCCCCEEECCCCCCCCCCHH---
Confidence 678999999999999752 333332 699999999999972 455566779999999999999853221
Q ss_pred HhhccCCCcCEEEccCCCCChh
Q psy18075 669 KAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 669 ~~L~~~~sL~~LdLs~N~Is~e 690 (999)
.+..+++|+.|+|++|++...
T Consensus 492 -~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 492 -VFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp -STTTCTTCCCEECCSCCBCCC
T ss_pred -HHhcCCCCCEEEecCCCcCCC
Confidence 377899999999999999764
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=5.1e-13 Score=146.58 Aligned_cols=171 Identities=22% Similarity=0.291 Sum_probs=133.0
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|+.|++++|.+.... .+ ..+++|++|+|++|+++.... +. .+++|+.|++++|+
T Consensus 46 ~~L~~L~l~~~~i~~~~--~~------~~l~~L~~L~L~~n~l~~~~~------l~----------~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ--GI------QYLPNVTKLFLNGNKLTDIKP------LA----------NLKNLGWLFLDENK 101 (291)
T ss_dssp HTCCEEECTTSCCCCCT--TG------GGCTTCCEEECCSSCCCCCGG------GT----------TCTTCCEEECCSSC
T ss_pred CcccEEEccCCCcccCh--hH------hcCCCCCEEEccCCccCCCcc------cc----------cCCCCCEEECCCCc
Confidence 57999999999987653 22 235789999999999874322 22 23569999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
++.- ..+..+++|++|+|++|.|+.. ..+..+++|+.|+|++|.++. + ..+..+++|+.|++
T Consensus 102 l~~~------~~l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 102 VKDL------SSLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITD-----I-TVLSRLTKLDTLSL 163 (291)
T ss_dssp CCCG------GGGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCC-----C-GGGGGCTTCSEEEC
T ss_pred CCCC------hhhccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCc-----c-hhhccCCCCCEEEc
Confidence 8862 2377789999999999998863 356678999999999999884 2 45677889999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
++|.+++... +..+++|+.|+|++|.|++- ..+..+++|+.|++++|+++..+
T Consensus 164 ~~N~l~~~~~------l~~l~~L~~L~L~~N~i~~l------~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 164 EDNQISDIVP------LAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CSSCCCCCGG------GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSEEEEEEEEEECCC
T ss_pred cCCccccchh------hcCCCccCEEECCCCcCCCC------hhhccCCCCCEEECcCCcccCCc
Confidence 9999875431 67789999999999999863 24678899999999999887643
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=2.9e-13 Score=144.73 Aligned_cols=193 Identities=20% Similarity=0.242 Sum_probs=143.4
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
...++++++++.++..... + .++|+.|+|++|+|+......+ +..++|++|+|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~--------~~~l~~L~L~~n~l~~~~~~~~--------------~~l~~L~~L~L~~n~ 70 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-I--------PADTEKLDLQSTGLATLSDATF--------------RGLTKLTWLNLDYNQ 70 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-C--------CTTCCEEECTTSCCCCCCTTTT--------------TTCTTCCEEECTTSC
T ss_pred CCCeEEecCCCCccccCCC-C--------CCCCCEEEccCCCcCccCHhHh--------------cCcccCCEEECCCCc
Confidence 4678899999998755421 1 1479999999999875443222 234679999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
|+... +..|..+++|++|+|++|.|+... ...+..+++|++|+|++|.|+. .....+..+++|+.|+|
T Consensus 71 l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 71 LQTLS----AGVFDDLTELGTLGLANNQLASLP----LGVFDHLTQLDKLYLGGNQLKS----LPSGVFDRLTKLKELRL 138 (251)
T ss_dssp CCCCC----TTTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEEC
T ss_pred CCccC----HhHhccCCcCCEEECCCCcccccC----hhHhcccCCCCEEEcCCCcCCC----cChhHhccCCcccEEEC
Confidence 98643 234667899999999999998542 3456678999999999999984 12234567899999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh--cHHHHHHHHhcC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GVEEMEKLMKSF 702 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e--g~~~L~~~L~~l 702 (999)
++|.|+... ...+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|++... ....+...+...
T Consensus 139 s~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~ 208 (251)
T 3m19_A 139 NTNQLQSIP----AGAFDKLTNLQTLSLSTNQLQSVP----HGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN 208 (251)
T ss_dssp CSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred cCCcCCccC----HHHcCcCcCCCEEECCCCcCCccC----HHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence 999997433 245677899999999999998632 24567889999999999999765 344455555543
No 95
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.41 E-value=3.7e-13 Score=152.90 Aligned_cols=219 Identities=16% Similarity=0.148 Sum_probs=155.5
Q ss_pred cccEEEecCCCCC-Ccc---HHHHHHHHhccCCCCccEEEccCCccCchh-----hhHHHHHHhhhccCCcCCCCCCCcc
Q psy18075 468 RLVELDLSDNAFG-PIG---VEGLADLLRSSCCFALEELKLNNNGLGITG-----CKLLSKALHDCYESSKKEGSPLALK 538 (999)
Q Consensus 468 sL~~LdLS~N~L~-~~g---v~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g-----~~~La~~L~~~~~~s~~~g~~~sLk 538 (999)
.++.|.+....+. ... +..+...+. ..++|+.|.+....+.... ...+...+..+ ++|+
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~--~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~----------P~L~ 175 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKE--KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM----------PLLN 175 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHH--HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTC----------TTCC
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhh--hcchhhheeecCcchhhcccccccccCHHHHHhcC----------CCCc
Confidence 5677777765543 121 223322221 2358888888664332111 11244554443 5699
Q ss_pred EEEccCCC-CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccC--C-CCCcCCccccccc
Q psy18075 539 VFIAGRNR-LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND--N-TITYKGAIPLGQA 614 (999)
Q Consensus 539 ~L~Ls~N~-L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~--N-~Lsd~G~~~L~~a 614 (999)
.|.|++|. +. +.. + .+++|++|+|..|.|+..++..++. ..+|+|+.|+|+. | ..++.++..++..
T Consensus 176 ~L~L~g~~~l~------l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~--~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 176 NLKIKGTNNLS------IGK-K-PRPNLKSLEIISGGLPDSVVEDILG--SDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp EEEEECCBTCB------CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH--SBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred EEEEeCCCCce------ecc-c-cCCCCcEEEEecCCCChHHHHHHHH--ccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 99998773 22 111 2 2689999999999999887766653 2578999999863 2 2344456566665
Q ss_pred cc--CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcH
Q psy18075 615 LS--KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 692 (999)
Q Consensus 615 L~--~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~ 692 (999)
+. .+++|+.|+|.+|.+++.++..++.+ ..+++|++|+|++|.|++.|+..++..+..+++|+.|+|++|.|+++|+
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 54 57899999999999998887777765 4569999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHhcCCCCCEEeCCCCC
Q psy18075 693 EEMEKLMKSFGMAAALVLEDDE 714 (999)
Q Consensus 693 ~~L~~~L~~l~~L~~L~Ls~N~ 714 (999)
..|..++ ...++++++.
T Consensus 325 ~~l~~al-----g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL-----PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC-----CSEEECCSBC
T ss_pred HHHHHHc-----CCEEEecCCc
Confidence 9998875 4557887765
No 96
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=3.6e-13 Score=145.87 Aligned_cols=180 Identities=22% Similarity=0.249 Sum_probs=130.1
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
.++|+.|++++|.+.... .+ ..+++|++|+|++|.++.. . .+. .+++|++|++++|
T Consensus 40 l~~L~~L~l~~~~i~~~~--~l------~~l~~L~~L~l~~n~l~~~--~----~l~----------~l~~L~~L~L~~n 95 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ--GI------QYLPNVRYLALGGNKLHDI--S----ALK----------ELTNLTYLILTGN 95 (272)
T ss_dssp HTTCCEEECTTSCCCCCT--TG------GGCTTCCEEECTTSCCCCC--G----GGT----------TCTTCCEEECTTS
T ss_pred ccceeeeeeCCCCccccc--cc------ccCCCCcEEECCCCCCCCc--h----hhc----------CCCCCCEEECCCC
Confidence 468999999999886543 12 2357899999999988742 1 222 3356999999999
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
+++... ...+..+++|++|+|++|.|+.. ....+..+++|++|+|++|.++.- ....+..+++|+.|+
T Consensus 96 ~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 96 QLQSLP----NGVFDKLTNLKELVLVENQLQSL----PDGVFDKLTNLTYLNLAHNQLQSL----PKGVFDKLTNLTELD 163 (272)
T ss_dssp CCCCCC----TTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEE
T ss_pred ccCccC----hhHhcCCcCCCEEECCCCcCCcc----CHHHhccCCCCCEEECCCCccCcc----CHHHhccCccCCEEE
Confidence 887532 22356678899999999988853 233466788899999999988742 233456788999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
+++|.++... ...+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|++..
T Consensus 164 l~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 164 LSYNQLQSLP----EGVFDKLTQLKDLRLYQNQLKSVP----DGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCcCccC----HHHhcCCccCCEEECCCCcCCccC----HHHHhCCcCCCEEEccCCCccc
Confidence 9999887433 244566789999999999888632 2446678899999999998764
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.39 E-value=6.9e-13 Score=143.60 Aligned_cols=179 Identities=20% Similarity=0.298 Sum_probs=107.9
Q ss_pred CCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccC
Q psy18075 497 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 576 (999)
Q Consensus 497 ~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It 576 (999)
++|+.|++++|.++.... +.. +++|++|++++|++.+. ..+..+++|++|+|++|.|+
T Consensus 41 ~~L~~L~l~~~~i~~~~~------l~~----------l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG------IQY----------LPNVRYLALGGNKLHDI------SALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp TTCCEEECTTSCCCCCTT------GGG----------CTTCCEEECTTSCCCCC------GGGTTCTTCCEEECTTSCCC
T ss_pred cceeeeeeCCCCcccccc------ccc----------CCCCcEEECCCCCCCCc------hhhcCCCCCCEEECCCCccC
Confidence 467777777777653221 111 24577777777777642 24556677777777777776
Q ss_pred chhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccC
Q psy18075 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 656 (999)
Q Consensus 577 ~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~ 656 (999)
.. ....+..+++|++|+|++|.++. .....+..+++|+.|++++|.++... ...+..+++|+.|+|++
T Consensus 99 ~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 99 SL----PNGVFDKLTNLKELVLVENQLQS----LPDGVFDKLTNLTYLNLAHNQLQSLP----KGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CC----CTTTTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCS
T ss_pred cc----ChhHhcCCcCCCEEECCCCcCCc----cCHHHhccCCCCCEEECCCCccCccC----HHHhccCccCCEEECCC
Confidence 43 12334556777777777777663 12233456677777777777766332 23345567777777777
Q ss_pred CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 657 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 657 N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
|.|+... ...+..+++|+.|+|++|.++.. ....+..+++|+.|++++|....
T Consensus 167 n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 167 NQLQSLP----EGVFDKLTQLKDLRLYQNQLKSV----PDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp SCCCCCC----TTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcCccC----HHHhcCCccCCEEECCCCcCCcc----CHHHHhCCcCCCEEEccCCCccc
Confidence 7776422 22345667777777777777652 12345666777777777765443
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=1.9e-12 Score=142.06 Aligned_cols=188 Identities=20% Similarity=0.262 Sum_probs=146.3
Q ss_pred ccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCC
Q psy18075 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLE 548 (999)
Q Consensus 469 L~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~ 548 (999)
+..+.+..+.+.+... +.. +++|+.|++++|+++... . +.. +++|+.|++++|+++
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~------l~~L~~L~l~~~~i~~~~--~----~~~----------l~~L~~L~L~~n~l~ 81 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNE------LNSIDQIIANNSDIKSVQ--G----IQY----------LPNVTKLFLNGNKLT 81 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHH------HHTCCEEECTTSCCCCCT--T----GGG----------CTTCCEEECCSSCCC
T ss_pred HHHHHhcCCCcccccc--hhh------cCcccEEEccCCCcccCh--h----Hhc----------CCCCCEEEccCCccC
Confidence 3344556666654321 222 258999999999987432 1 222 356999999999998
Q ss_pred chhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCC
Q psy18075 549 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628 (999)
Q Consensus 549 d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~ 628 (999)
+... +..+++|+.|+|++|.|+.. ..+..+++|+.|+|++|.+++ + ..+..+++|+.|++++
T Consensus 82 ~~~~------l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~n~i~~-----~-~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 82 DIKP------LANLKNLGWLFLDENKVKDL------SSLKDLKKLKSLSLEHNGISD-----I-NGLVHLPQLESLYLGN 143 (291)
T ss_dssp CCGG------GTTCTTCCEEECCSSCCCCG------GGGTTCTTCCEEECTTSCCCC-----C-GGGGGCTTCCEEECCS
T ss_pred CCcc------cccCCCCCEEECCCCcCCCC------hhhccCCCCCEEECCCCcCCC-----C-hhhcCCCCCCEEEccC
Confidence 6432 77799999999999999863 247789999999999999985 2 3567789999999999
Q ss_pred CCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEE
Q psy18075 629 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 708 (999)
Q Consensus 629 N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L 708 (999)
|.++.. ..+..+++|+.|+|++|.|++... +..+++|+.|+|++|.|+.- ..+..+++|+.|
T Consensus 144 n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~L~~N~i~~l------~~l~~l~~L~~L 205 (291)
T 1h6t_A 144 NKITDI------TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDL------RALAGLKNLDVL 205 (291)
T ss_dssp SCCCCC------GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSEE
T ss_pred CcCCcc------hhhccCCCCCEEEccCCccccchh------hcCCCccCEEECCCCcCCCC------hhhccCCCCCEE
Confidence 999853 457778999999999999987432 77899999999999999873 247889999999
Q ss_pred eCCCCCCC
Q psy18075 709 VLEDDEGE 716 (999)
Q Consensus 709 ~Ls~N~~e 716 (999)
++++|.-.
T Consensus 206 ~l~~n~i~ 213 (291)
T 1h6t_A 206 ELFSQECL 213 (291)
T ss_dssp EEEEEEEE
T ss_pred ECcCCccc
Confidence 99988543
No 99
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.36 E-value=4.2e-12 Score=153.94 Aligned_cols=236 Identities=18% Similarity=0.166 Sum_probs=166.1
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+..... .+++|++|+|++|.|+.- .. ..++|+.+ ++..+.+. .+|.
T Consensus 62 ~L~~L~L~~N~l~~lp~-----------~l~~L~~L~Ls~N~l~~l-----p~---~l~~L~~L---~Ls~N~l~-~l~~ 118 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA-----------LPPELRTLEVSGNQLTSL-----PV---LPPGLLEL---SIFSNPLT-HLPA 118 (622)
T ss_dssp TCSEEEECSCCCSCCCC-----------CCTTCCEEEECSCCCSCC-----CC---CCTTCCEE---EECSCCCC-CCCC
T ss_pred CCcEEEecCCCCCCCCC-----------cCCCCCEEEcCCCcCCcC-----CC---CCCCCCEE---ECcCCcCC-CCCC
Confidence 56677777777642111 346677777777776531 11 22333222 12222221 1222
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
..++|+.|+|++|.|+.... .+++|++|+|++|.|+... ..
T Consensus 119 -----------~l~~L~~L~L~~N~l~~lp~----------~l~~L~~L~Ls~N~l~~l~------------------~~ 159 (622)
T 3g06_A 119 -----------LPSGLCKLWIFGNQLTSLPV----------LPPGLQELSVSDNQLASLP------------------AL 159 (622)
T ss_dssp -----------CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSCCC------------------CC
T ss_pred -----------CCCCcCEEECCCCCCCcCCC----------CCCCCCEEECcCCcCCCcC------------------Cc
Confidence 24689999999999976442 1268999999999987321 01
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
+.+|+.|++++|+|+.- + ..+++|+.|+|++|.|+.. +. ..++|+.|++++|.++. ++.
T Consensus 160 ~~~L~~L~L~~N~l~~l-----~---~~~~~L~~L~Ls~N~l~~l-----~~---~~~~L~~L~L~~N~l~~-----l~~ 218 (622)
T 3g06_A 160 PSELCKLWAYNNQLTSL-----P---MLPSGLQELSVSDNQLASL-----PT---LPSELYKLWAYNNRLTS-----LPA 218 (622)
T ss_dssp CTTCCEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSS-----CCC
T ss_pred cCCCCEEECCCCCCCCC-----c---ccCCCCcEEECCCCCCCCC-----CC---ccchhhEEECcCCcccc-----cCC
Confidence 35699999999999852 2 3468999999999999852 22 23789999999999983 333
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHH
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 693 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~ 693 (999)
.+++|+.|+|++|.|+.. + ...++|+.|+|++|.|+.- +. .+++|+.|+|++|.|+.
T Consensus 219 ---~~~~L~~L~Ls~N~L~~l-----p---~~l~~L~~L~Ls~N~L~~l-----p~---~~~~L~~L~Ls~N~L~~---- 275 (622)
T 3g06_A 219 ---LPSGLKELIVSGNRLTSL-----P---VLPSELKELMVSGNRLTSL-----PM---LPSGLLSLSVYRNQLTR---- 275 (622)
T ss_dssp ---CCTTCCEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCCS----
T ss_pred ---CCCCCCEEEccCCccCcC-----C---CCCCcCcEEECCCCCCCcC-----Cc---ccccCcEEeCCCCCCCc----
Confidence 247899999999999742 2 3458999999999999852 21 57899999999999984
Q ss_pred HHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 694 EMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 694 ~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
++..+..+++|+.|++++|.-.
T Consensus 276 -lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 276 -LPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp -CCGGGGGSCTTCEEECCSCCCC
T ss_pred -CCHHHhhccccCEEEecCCCCC
Confidence 5667889999999999999764
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.36 E-value=9.4e-13 Score=135.65 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=52.4
Q ss_pred hhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCC-CCccchHH
Q psy18075 560 KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL-LKSAGASS 638 (999)
Q Consensus 560 ~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~-L~d~g~~~ 638 (999)
..+++|++|+|++|.|+..+. ..+..+++|++|+|++|.+++. .+..+..+++|++|++++|. +++.
T Consensus 85 ~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~~i~~~---- 152 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDVTSDKI----PNLSGLTSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITDI---- 152 (197)
T ss_dssp TTCTTCCEEEEECTTCBGGGS----CCCTTCTTCCEEECCSSBCBGG----GHHHHTTCSSCCEEECCSCTBCCCC----
T ss_pred hcCCCCCEEEeECCccCcccC----hhhcCCCCCCEEEecCCccCcH----hHHHHhhCCCCCEEEccCCCCcccc----
Confidence 334455555555555543322 2233345555555555555532 22333445555555555554 4422
Q ss_pred HHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 639 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 639 La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
..+..+++|+.|++++|.|++.. .+..+++|+.|++++|+|+.
T Consensus 153 --~~l~~l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 153 --MPLKTLPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp --GGGGGCSSCCEEECTTBCCCCCT------TGGGCSSCCEEEECBC----
T ss_pred --HhhcCCCCCCEEECCCCCCcChH------HhccCCCCCEEEeeCcccCC
Confidence 13444556666666666655421 34455666666666666543
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.35 E-value=1.5e-12 Score=139.25 Aligned_cols=181 Identities=20% Similarity=0.268 Sum_probs=141.3
Q ss_pred CCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccC
Q psy18075 497 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 576 (999)
Q Consensus 497 ~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It 576 (999)
...+++++++++++... .+-+..++.|+|++|++..... ..|..+++|++|+|++|.|+
T Consensus 14 ~~~~~l~~~~~~l~~~p-----------------~~~~~~l~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-----------------SGIPADTEKLDLQSTGLATLSD----ATFRGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp GGGTEEECTTCCCSSCC-----------------SCCCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECTTSCCC
T ss_pred CCCeEEecCCCCccccC-----------------CCCCCCCCEEEccCCCcCccCH----hHhcCcccCCEEECCCCcCC
Confidence 46789999999886221 1123569999999999986433 34667899999999999998
Q ss_pred chhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccC
Q psy18075 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 656 (999)
Q Consensus 577 ~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~ 656 (999)
.. .+..+..+++|+.|+|++|.++.. ....+..+++|+.|+|++|.|+... ...+..+++|+.|+|++
T Consensus 73 ~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 73 TL----SAGVFDDLTELGTLGLANNQLASL----PLGVFDHLTQLDKLYLGGNQLKSLP----SGVFDRLTKLKELRLNT 140 (251)
T ss_dssp CC----CTTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCS
T ss_pred cc----CHhHhccCCcCCEEECCCCccccc----ChhHhcccCCCCEEEcCCCcCCCcC----hhHhccCCcccEEECcC
Confidence 64 334567789999999999999842 2345677899999999999998433 23456789999999999
Q ss_pred CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCCC
Q psy18075 657 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECS 718 (999)
Q Consensus 657 N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~e 718 (999)
|.|+... ...+..+++|++|+|++|.|+... ...+..+++|+.|++++|....+
T Consensus 141 N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 141 NQLQSIP----AGAFDKLTNLQTLSLSTNQLQSVP----HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCCCCC----TTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCccC----HHHcCcCcCCCEEECCCCcCCccC----HHHHhCCCCCCEEEeeCCceeCC
Confidence 9998632 235678899999999999998632 24577889999999999987665
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.34 E-value=1.7e-12 Score=156.86 Aligned_cols=171 Identities=22% Similarity=0.290 Sum_probs=133.0
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|+.|+|++|.|.... .+ ..|++|+.|+|++|.|+.... +.. +++|+.|+|++|
T Consensus 42 L~~L~~L~l~~n~i~~l~--~l------~~l~~L~~L~Ls~N~l~~~~~------l~~----------l~~L~~L~Ls~N 97 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ--GI------QYLPNVTKLFLNGNKLTDIKP------LTN----------LKNLGWLFLDEN 97 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT--TG------GGCTTCCEEECTTSCCCCCGG------GGG----------CTTCCEEECCSS
T ss_pred CCCCCEEECcCCCCCCCh--HH------ccCCCCCEEEeeCCCCCCChh------hcc----------CCCCCEEECcCC
Confidence 358899999999987653 22 235789999999998874332 222 356999999999
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
+|... ..+..+++|+.|+|++|.|+.. ..+..+++|+.|+|++|.|+. + ..+..+++|+.|+
T Consensus 98 ~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 98 KIKDL------SSLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITD-----I-TVLSRLTKLDTLS 159 (605)
T ss_dssp CCCCC------TTSTTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCC-----C-GGGGSCTTCSEEE
T ss_pred CCCCC------hhhccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCC-----c-hhhcccCCCCEEE
Confidence 98852 2467788999999999998863 346778999999999999884 2 4567889999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
|++|.|++.. . +..+++|+.|+|++|.|++. ..+..+++|+.|+|++|++...
T Consensus 160 Ls~N~l~~~~-----~-l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 160 LEDNQISDIV-----P-LAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSEEECCSEEEECC
T ss_pred CcCCcCCCch-----h-hccCCCCCEEECcCCCCCCC------hHHccCCCCCEEEccCCcCcCC
Confidence 9999987432 1 67789999999999999863 3577889999999999988764
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=1.7e-12 Score=140.41 Aligned_cols=168 Identities=20% Similarity=0.269 Sum_probs=123.0
Q ss_pred cccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCC
Q psy18075 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 547 (999)
Q Consensus 468 sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L 547 (999)
.++.+++++|.+++.. .+..+ ++|++|++++|+|+... .+.. .++|+.|+|++|+|
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l------~~L~~L~l~~n~i~~l~------~l~~----------l~~L~~L~L~~N~i 75 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKEL------SGVQNFNGDNSNIQSLA------GMQF----------FTNLKELHLSHNQI 75 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHH------TTCSEEECTTSCCCCCT------TGGG----------CTTCCEEECCSSCC
T ss_pred HHHHHHhcCCCccccc--chhhc------CcCcEEECcCCCcccch------HHhh----------CCCCCEEECCCCcc
Confidence 5666778888887655 33332 58899999998886432 1222 25688999999888
Q ss_pred CchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcC
Q psy18075 548 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627 (999)
Q Consensus 548 ~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs 627 (999)
++... +..+++|+.|+|++|+|+... . +.. ++|+.|+|++|.++. + ..+..+++|+.|+++
T Consensus 76 ~~~~~------l~~l~~L~~L~L~~N~l~~l~--~----~~~-~~L~~L~L~~N~l~~-----~-~~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 76 SDLSP------LKDLTKLEELSVNRNRLKNLN--G----IPS-ACLSRLFLDNNELRD-----T-DSLIHLKNLEILSIR 136 (263)
T ss_dssp CCCGG------GTTCSSCCEEECCSSCCSCCT--T----CCC-SSCCEEECCSSCCSB-----S-GGGTTCTTCCEEECT
T ss_pred CCChh------hccCCCCCEEECCCCccCCcC--c----ccc-CcccEEEccCCccCC-----C-hhhcCcccccEEECC
Confidence 86432 667888999999999887631 1 222 789999999998874 2 246778899999999
Q ss_pred CCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 628 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 628 ~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
+|.+++. ..+..+++|+.|+|++|+|++. ..+..+++|+.|++++|.++..
T Consensus 137 ~N~i~~~------~~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 137 NNKLKSI------VMLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBC------GGGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCcCCCC------hHHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCCcccCC
Confidence 9988753 2466778899999999988863 4567788999999999887664
No 104
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.33 E-value=3.4e-13 Score=142.75 Aligned_cols=196 Identities=16% Similarity=0.143 Sum_probs=145.1
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCc-cCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC-
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG-LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR- 544 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~-Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~- 544 (999)
++|+.|+|++|.|+......+ ..+++|++|+|++|. ++......+ +..++|++|++++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~------~~l~~L~~L~l~~n~~l~~i~~~~f--------------~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAF------SNLPNISRIYVSIDVTLQQLESHSF--------------YNLSKVTHIEIRNT 90 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTT------TTCTTCCEEEEECCSSCCEECTTTE--------------ESCTTCCEEEEEEE
T ss_pred CcccEEEEeCCcceEECHHHc------cCCCCCcEEeCCCCCCcceeCHhHc--------------CCCcCCcEEECCCC
Confidence 489999999999987665444 235799999999997 763332111 2346799999998
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCc---eeeccCC-CCCcCCccccc-ccccCCC
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLR---HLNLNDN-TITYKGAIPLG-QALSKLP 619 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr---~LdLS~N-~Lsd~G~~~L~-~aL~~l~ 619 (999)
|+++.... ..|..+++|++|+|++|.|+. ++. +..+++|+ .|++++| .++. +. ..+..++
T Consensus 91 n~l~~i~~----~~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~-----i~~~~~~~l~ 155 (239)
T 2xwt_C 91 RNLTYIDP----DALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTS-----IPVNAFQGLC 155 (239)
T ss_dssp TTCCEECT----TSEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCE-----ECTTTTTTTB
T ss_pred CCeeEcCH----HHhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhh-----cCcccccchh
Confidence 99885332 346678899999999999985 233 66677887 9999999 8874 33 3467788
Q ss_pred CCc-EEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCC-CCCcchhhHHHhhccC-CCcCEEEccCCCCChhcHHHHH
Q psy18075 620 SLA-ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE-ISVQGGLDLVKAMKNK-TKLKQINVSENQFGEEGVEEME 696 (999)
Q Consensus 620 sL~-~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~-I~~~g~~~L~~~L~~~-~sL~~LdLs~N~Is~eg~~~L~ 696 (999)
+|+ .|++++|.++.... .++.. ++|+.|+|++|+ ++.-. ...+..+ ++|+.|++++|.|+.-.
T Consensus 156 ~L~~~L~l~~n~l~~i~~----~~~~~-~~L~~L~L~~n~~l~~i~----~~~~~~l~~~L~~L~l~~N~l~~l~----- 221 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQG----YAFNG-TKLDAVYLNKNKYLTVID----KDAFGGVYSGPSLLDVSQTSVTALP----- 221 (239)
T ss_dssp SSEEEEECCSCCCCEECT----TTTTT-CEEEEEECTTCTTCCEEC----TTTTTTCSBCCSEEECTTCCCCCCC-----
T ss_pred cceeEEEcCCCCCcccCH----hhcCC-CCCCEEEcCCCCCcccCC----HHHhhccccCCcEEECCCCccccCC-----
Confidence 999 99999999874332 22333 789999999995 87532 2345677 89999999999997622
Q ss_pred HHHhcCCCCCEEeCCCC
Q psy18075 697 KLMKSFGMAAALVLEDD 713 (999)
Q Consensus 697 ~~L~~l~~L~~L~Ls~N 713 (999)
. ..+++|+.|++.++
T Consensus 222 ~--~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 222 S--KGLEHLKELIARNT 236 (239)
T ss_dssp C--TTCTTCSEEECTTC
T ss_pred h--hHhccCceeeccCc
Confidence 1 15778889888765
No 105
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.31 E-value=5.2e-13 Score=155.86 Aligned_cols=249 Identities=18% Similarity=0.137 Sum_probs=128.1
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHh----------hhhcc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRAL----------WKDMF 443 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll----------~~nl~ 443 (999)
.++.+.++++.+ ..++..++++++|++|++++|.+.......++ .+.+++... ..++.
T Consensus 12 ~L~~L~l~~n~l--------~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~----~l~~L~~l~l~~c~~~~l~~L~l~ 79 (454)
T 1jl5_A 12 FLQEPLRHSSNL--------TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG----EQREMAVSRLRDCLDRQAHELELN 79 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSC----CCHHHHHHHHHHHHHHTCSEEECT
T ss_pred cchhhhcccCch--------hhCChhHhcccchhhhhccCCcccccCCcccc----cchhcchhhhhhhhccCCCEEEec
Confidence 556677777666 25677777778888888877655432221111 122221110 00111
Q ss_pred cCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhh
Q psy18075 444 TGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHD 523 (999)
Q Consensus 444 t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~ 523 (999)
.+++ ..+|. ..++|+.|+|++|.++.... ..++|++|++++|.++....
T Consensus 80 ~~~l-~~lp~-----------~~~~L~~L~l~~n~l~~lp~----------~~~~L~~L~l~~n~l~~l~~--------- 128 (454)
T 1jl5_A 80 NLGL-SSLPE-----------LPPHLESLVASCNSLTELPE----------LPQSLKSLLVDNNNLKALSD--------- 128 (454)
T ss_dssp TSCC-SCCCS-----------CCTTCSEEECCSSCCSSCCC----------CCTTCCEEECCSSCCSCCCS---------
T ss_pred CCcc-ccCCC-----------CcCCCCEEEccCCcCCcccc----------ccCCCcEEECCCCccCcccC---------
Confidence 1111 11111 12466777777776654321 01367777777776652110
Q ss_pred hccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCC
Q psy18075 524 CYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTI 603 (999)
Q Consensus 524 ~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~L 603 (999)
.+.+|++|++++|+++. ++ .+..+++|++|++++|.|+.. +.. .++|++|++++|.+
T Consensus 129 ---------~~~~L~~L~L~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~l-----p~~---~~~L~~L~L~~n~l 185 (454)
T 1jl5_A 129 ---------LPPLLEYLGVSNNQLEK-----LP-ELQNSSFLKIIDVDNNSLKKL-----PDL---PPSLEFIAAGNNQL 185 (454)
T ss_dssp ---------CCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSCC-----CCC---CTTCCEEECCSSCC
T ss_pred ---------CCCCCCEEECcCCCCCC-----Cc-ccCCCCCCCEEECCCCcCccc-----CCC---cccccEEECcCCcC
Confidence 11357888888887763 22 366677788888888877642 211 23778888888877
Q ss_pred CcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEcc
Q psy18075 604 TYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 683 (999)
Q Consensus 604 sd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs 683 (999)
.. ++ .+..+++|+.|++++|.++.. +. ..++|+.|++++|.++. +. .+..+++|++|+++
T Consensus 186 ~~-----l~-~~~~l~~L~~L~l~~N~l~~l-----~~---~~~~L~~L~l~~n~l~~-----lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 186 EE-----LP-ELQNLPFLTAIYADNNSLKKL-----PD---LPLSLESIVAGNNILEE-----LP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp SS-----CC-CCTTCTTCCEEECCSSCCSSC-----CC---CCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECC
T ss_pred Cc-----Cc-cccCCCCCCEEECCCCcCCcC-----CC---CcCcccEEECcCCcCCc-----cc-ccCCCCCCCEEECC
Confidence 63 33 466777888888888877631 11 11578888888887763 22 25677788888888
Q ss_pred CCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 684 ENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 684 ~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
+|.++.- . ...++|+.|++++|.-.
T Consensus 246 ~N~l~~l-----~---~~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 246 NNLLKTL-----P---DLPPSLEALNVRDNYLT 270 (454)
T ss_dssp SSCCSSC-----C---SCCTTCCEEECCSSCCS
T ss_pred CCcCCcc-----c---ccccccCEEECCCCccc
Confidence 8877641 1 12367778888776543
No 106
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.31 E-value=9.2e-13 Score=139.45 Aligned_cols=175 Identities=13% Similarity=0.075 Sum_probs=128.2
Q ss_pred CCcccEEEecCCC-CCCccHHHHHHHHhccCCCCccEEEccC-CccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEcc
Q psy18075 466 GARLVELDLSDNA-FGPIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 543 (999)
Q Consensus 466 ~~sL~~LdLS~N~-L~~~gv~~L~~~L~s~~c~~L~~L~Ls~-n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls 543 (999)
+++|+.|+|++|. ++......+ ..+++|++|+|++ |.|+...... ++..++|++|+++
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f------~~l~~L~~L~l~~~n~l~~i~~~~--------------f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSF------YNLSKVTHIEIRNTRNLTYIDPDA--------------LKELPLLKFLGIF 113 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTE------ESCTTCCEEEEEEETTCCEECTTS--------------EECCTTCCEEEEE
T ss_pred CCCCcEEeCCCCCCcceeCHhHc------CCCcCCcEEECCCCCCeeEcCHHH--------------hCCCCCCCEEeCC
Confidence 5689999999997 876554333 3457999999998 8886332211 1234679999999
Q ss_pred CCCCCchhHHHHHHHHhhccccc---ccccCCC-ccCchhhhhhhHHhhhcccCc-eeeccCCCCCcCCcccccccccCC
Q psy18075 544 RNRLENEGAKMLAAVFKKLKTLE---RVEMPQN-GIYHVGITALSDAFEENKNLR-HLNLNDNTITYKGAIPLGQALSKL 618 (999)
Q Consensus 544 ~N~L~d~g~~~L~~~L~~~~sLe---~LdLs~N-~It~~g~~~La~aL~~~~~Lr-~LdLS~N~Lsd~G~~~L~~aL~~l 618 (999)
+|+++.- +. +..+++|+ +|++++| .|+... ...+..+++|+ .|+|++|.+.. ++......
T Consensus 114 ~n~l~~l-----p~-~~~l~~L~~L~~L~l~~N~~l~~i~----~~~~~~l~~L~~~L~l~~n~l~~-----i~~~~~~~ 178 (239)
T 2xwt_C 114 NTGLKMF-----PD-LTKVYSTDIFFILEITDNPYMTSIP----VNAFQGLCNETLTLKLYNNGFTS-----VQGYAFNG 178 (239)
T ss_dssp EECCCSC-----CC-CTTCCBCCSEEEEEEESCTTCCEEC----TTTTTTTBSSEEEEECCSCCCCE-----ECTTTTTT
T ss_pred CCCCccc-----cc-cccccccccccEEECCCCcchhhcC----cccccchhcceeEEEcCCCCCcc-----cCHhhcCC
Confidence 9998852 22 66677887 9999999 887642 23466789999 99999999873 44333334
Q ss_pred CCCcEEEcCCCC-CCccchHHHHHhccCC-CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCC
Q psy18075 619 PSLAILNLGDCL-LKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 686 (999)
Q Consensus 619 ~sL~~LdLs~N~-L~d~g~~~La~aL~~~-~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~ 686 (999)
++|+.|++++|. ++... ..++..+ ++|+.|+|++|+|+.-.. ...++|+.|+++++.
T Consensus 179 ~~L~~L~L~~n~~l~~i~----~~~~~~l~~~L~~L~l~~N~l~~l~~-------~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVID----KDAFGGVYSGPSLLDVSQTSVTALPS-------KGLEHLKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCCEEC----TTTTTTCSBCCSEEECTTCCCCCCCC-------TTCTTCSEEECTTC-
T ss_pred CCCCEEEcCCCCCcccCC----HHHhhccccCCcEEECCCCccccCCh-------hHhccCceeeccCcc
Confidence 789999999995 87443 2456677 899999999999986322 157789999998764
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.31 E-value=6.2e-12 Score=152.05 Aligned_cols=189 Identities=21% Similarity=0.282 Sum_probs=148.9
Q ss_pred cccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCC
Q psy18075 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 547 (999)
Q Consensus 468 sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L 547 (999)
.+..++|+.+.+.+... +..+ ++|+.|+|++|.|.... .+.. +++|+.|+|++|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L------~~L~~L~l~~n~i~~l~------~l~~----------l~~L~~L~Ls~N~l 77 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNEL------NSIDQIIANNSDIKSVQ------GIQY----------LPNVTKLFLNGNKL 77 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHH------TTCCCCBCTTCCCCCCT------TGGG----------CTTCCEEECTTSCC
T ss_pred HHHHHhccCCCcccccc--hhcC------CCCCEEECcCCCCCCCh------HHcc----------CCCCCEEEeeCCCC
Confidence 34455667777755432 2222 58999999999987432 1222 35699999999999
Q ss_pred CchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcC
Q psy18075 548 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627 (999)
Q Consensus 548 ~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs 627 (999)
..... +..+++|+.|+|++|.|+.. ..+..+++|+.|+|++|.|.. + ..+..+++|+.|+|+
T Consensus 78 ~~~~~------l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 78 TDIKP------LTNLKNLGWLFLDENKIKDL------SSLKDLKKLKSLSLEHNGISD-----I-NGLVHLPQLESLYLG 139 (605)
T ss_dssp CCCGG------GGGCTTCCEEECCSSCCCCC------TTSTTCTTCCEEECTTSCCCC-----C-GGGGGCTTCSEEECC
T ss_pred CCChh------hccCCCCCEEECcCCCCCCC------hhhccCCCCCEEEecCCCCCC-----C-ccccCCCccCEEECC
Confidence 86432 77899999999999999863 257789999999999999985 2 346779999999999
Q ss_pred CCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCE
Q psy18075 628 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAA 707 (999)
Q Consensus 628 ~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~ 707 (999)
+|.++.. ..+..+++|+.|+|++|.|..... +..+++|+.|+|++|.|+.. ..+..+++|+.
T Consensus 140 ~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~ 201 (605)
T 1m9s_A 140 NNKITDI------TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDL------RALAGLKNLDV 201 (605)
T ss_dssp SSCCCCC------GGGGSCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSE
T ss_pred CCccCCc------hhhcccCCCCEEECcCCcCCCchh------hccCCCCCEEECcCCCCCCC------hHHccCCCCCE
Confidence 9999853 467788999999999999987321 77899999999999999873 35888999999
Q ss_pred EeCCCCCCC
Q psy18075 708 LVLEDDEGE 716 (999)
Q Consensus 708 L~Ls~N~~e 716 (999)
|++++|...
T Consensus 202 L~L~~N~l~ 210 (605)
T 1m9s_A 202 LELFSQECL 210 (605)
T ss_dssp EECCSEEEE
T ss_pred EEccCCcCc
Confidence 999987543
No 108
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.31 E-value=1.2e-12 Score=148.55 Aligned_cols=91 Identities=22% Similarity=0.257 Sum_probs=59.2
Q ss_pred cccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHH
Q psy18075 590 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 669 (999)
Q Consensus 590 ~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~ 669 (999)
+|+|++|+|++|.+++.++..++++ ..+++|++|+|+.|.+++.|+..++.++..+++|+.|+|++|.|++.|+..|..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 5667777776666666555555443 345667777777777777676666666666677777777777777766666665
Q ss_pred hhccCCCcCEEEccCCC
Q psy18075 670 AMKNKTKLKQINVSENQ 686 (999)
Q Consensus 670 ~L~~~~sL~~LdLs~N~ 686 (999)
++ ...+++++++
T Consensus 330 al-----g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL-----PMKIDVSDSQ 341 (362)
T ss_dssp HC-----CSEEECCSBC
T ss_pred Hc-----CCEEEecCCc
Confidence 54 3446776665
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=3.3e-12 Score=131.58 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=120.0
Q ss_pred CccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccc
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
+|+.|++++|.+.+- + .+..+++|++|++++|.++.. ..+..+++|++|+|++|.+++.+ ...+
T Consensus 45 ~L~~L~l~~n~i~~l-----~-~l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~~~~----~~~l 108 (197)
T 4ezg_A 45 SLTYITLANINVTDL-----T-GIEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDK----IPNL 108 (197)
T ss_dssp TCCEEEEESSCCSCC-----T-TGGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCBGGG----SCCC
T ss_pred CccEEeccCCCccCh-----H-HHhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccCccc----Chhh
Confidence 488888888888742 2 366789999999999987753 35677899999999999998633 3456
Q ss_pred cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCC-CCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHH
Q psy18075 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE-ISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 694 (999)
Q Consensus 616 ~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~-I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~ 694 (999)
..+++|+.|++++|.+++.+ ...+..+++|++|+|++|. +++- . .+..+++|+.|++++|.|++-
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~----~~~l~~l~~L~~L~L~~n~~i~~~-----~-~l~~l~~L~~L~l~~n~i~~~---- 174 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSI----LTKINTLPKVNSIDLSYNGAITDI-----M-PLKTLPELKSLNIQFDGVHDY---- 174 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGG----HHHHTTCSSCCEEECCSCTBCCCC-----G-GGGGCSSCCEEECTTBCCCCC----
T ss_pred cCCCCCCEEEecCCccCcHh----HHHHhhCCCCCEEEccCCCCcccc-----H-hhcCCCCCCEEECCCCCCcCh----
Confidence 67899999999999998654 4556678999999999998 8763 2 578899999999999999872
Q ss_pred HHHHHhcCCCCCEEeCCCCCC
Q psy18075 695 MEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 695 L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
. .+..+++|+.|++++|..
T Consensus 175 -~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 175 -R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp -T-TGGGCSSCCEEEECBC--
T ss_pred -H-HhccCCCCCEEEeeCccc
Confidence 2 678899999999999864
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.28 E-value=7.9e-12 Score=150.01 Aligned_cols=172 Identities=21% Similarity=0.214 Sum_probs=126.3
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|+.|+|++|.|+... . .+++|++|+|++|+|+.... + . .+|+.|+|++|+
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~--------~l~~L~~L~Ls~N~l~~ip~--l----~------------~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--E--------LPASLEYLDACDNRLSTLPE--L----P------------ASLKHLDVDNNQ 131 (571)
T ss_dssp TTCSEEECCSSCCSCCC--C--------CCTTCCEEECCSSCCSCCCC--C----C------------TTCCEEECCSSC
T ss_pred CCCCEEECcCCCCcccc--c--------ccCCCCEEEccCCCCCCcch--h----h------------cCCCEEECCCCc
Confidence 47999999999998544 1 24689999999999874211 1 1 159999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
|+. ++. .+++|+.|+|++|.|+.. +. .+++|+.|+|++|.|+. ++. +. ++|+.|+|
T Consensus 132 l~~-----lp~---~l~~L~~L~Ls~N~l~~l-----p~---~l~~L~~L~Ls~N~L~~-----lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 132 LTM-----LPE---LPALLEYINADNNQLTML-----PE---LPTSLEVLSVRNNQLTF-----LPE-LP--ESLEALDV 187 (571)
T ss_dssp CSC-----CCC---CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSC-----CCC-CC--TTCCEEEC
T ss_pred CCC-----CCC---cCccccEEeCCCCccCcC-----CC---cCCCcCEEECCCCCCCC-----cch-hh--CCCCEEEC
Confidence 985 222 478999999999999853 22 36799999999999984 444 43 89999999
Q ss_pred CCCCCCccchHHHHHhc-cCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHH
Q psy18075 627 GDCLLKSAGASSIAKYL-TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 697 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL-~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~ 697 (999)
++|.|+.... +...+ ...+.|+.|+|++|.|+. ++..+..+++|+.|+|++|.++......+..
T Consensus 188 s~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 188 STNLLESLPA--VPVRNHHSEETEIFFRCRENRITH-----IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSSCCSSCCC--CC--------CCEEEECCSSCCCC-----CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred cCCCCCchhh--HHHhhhcccccceEEecCCCccee-----cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 9999974322 22111 111334999999999985 5566677999999999999998864444443
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.28 E-value=3.6e-12 Score=137.84 Aligned_cols=168 Identities=13% Similarity=0.162 Sum_probs=134.4
Q ss_pred CCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccC
Q psy18075 497 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 576 (999)
Q Consensus 497 ~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It 576 (999)
.++..+++++|.+++.. .+... .+|+.|++++|+++.-. .+..+++|++|+|++|.|+
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l--------------~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~L~~N~i~ 76 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKEL--------------SGVQNFNGDNSNIQSLA------GMQFFTNLKELHLSHNQIS 76 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHH--------------TTCSEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCC
T ss_pred HHHHHHHhcCCCccccc--chhhc--------------CcCcEEECcCCCcccch------HHhhCCCCCEEECCCCccC
Confidence 35777888888887433 23222 45999999999998532 4677899999999999998
Q ss_pred chhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccC
Q psy18075 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 656 (999)
Q Consensus 577 ~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~ 656 (999)
+.. . +..+++|+.|+|++|.++. +.. +.. ++|+.|++++|.+++. ..+..+++|+.|+|++
T Consensus 77 ~~~-----~-l~~l~~L~~L~L~~N~l~~-----l~~-~~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 77 DLS-----P-LKDLTKLEELSVNRNRLKN-----LNG-IPS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRN 137 (263)
T ss_dssp CCG-----G-GTTCSSCCEEECCSSCCSC-----CTT-CCC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTT
T ss_pred CCh-----h-hccCCCCCEEECCCCccCC-----cCc-ccc-CcccEEEccCCccCCC------hhhcCcccccEEECCC
Confidence 642 2 7789999999999999985 222 223 8999999999999853 3477889999999999
Q ss_pred CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 657 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 657 N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
|+|++. ..+..+++|+.|+|++|.|+.. ..+..+++|+.|++++|.-..
T Consensus 138 N~i~~~------~~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 138 NKLKSI------VMLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp SCCCBC------GGGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEEC
T ss_pred CcCCCC------hHHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCCcccC
Confidence 999873 2578899999999999999884 567889999999999986543
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.26 E-value=5.3e-12 Score=147.34 Aligned_cols=133 Identities=21% Similarity=0.228 Sum_probs=78.3
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
++|++|++++|++..- +. ..++|+.|++++|.++.. +.. .++|+.|++++|.++. +..
T Consensus 237 ~~L~~L~l~~N~l~~l-----~~---~~~~L~~L~l~~N~l~~l-----~~~---~~~L~~L~ls~N~l~~-----l~~- 294 (454)
T 1jl5_A 237 PFLTTIYADNNLLKTL-----PD---LPPSLEALNVRDNYLTDL-----PEL---PQSLTFLDVSENIFSG-----LSE- 294 (454)
T ss_dssp TTCCEEECCSSCCSSC-----CS---CCTTCCEEECCSSCCSCC-----CCC---CTTCCEEECCSSCCSE-----ESC-
T ss_pred CCCCEEECCCCcCCcc-----cc---cccccCEEECCCCccccc-----Ccc---cCcCCEEECcCCccCc-----ccC-
Confidence 4566666666665531 11 134566666666666531 111 2456666776666653 111
Q ss_pred ccCCCCCcEEEcCCCCCCccchHHHHHhccCC-CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHH
Q psy18075 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 693 (999)
Q Consensus 615 L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~-~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~ 693 (999)
-.++|+.|++++|.++. +... ++|+.|++++|+++.-. ..+++|+.|++++|.++.-
T Consensus 295 --~~~~L~~L~l~~N~l~~---------i~~~~~~L~~L~Ls~N~l~~lp--------~~~~~L~~L~L~~N~l~~l--- 352 (454)
T 1jl5_A 295 --LPPNLYYLNASSNEIRS---------LCDLPPSLEELNVSNNKLIELP--------ALPPRLERLIASFNHLAEV--- 352 (454)
T ss_dssp --CCTTCCEEECCSSCCSE---------ECCCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCC---
T ss_pred --cCCcCCEEECcCCcCCc---------ccCCcCcCCEEECCCCcccccc--------ccCCcCCEEECCCCccccc---
Confidence 12467777777777653 1223 47888888888777421 1247788888888887742
Q ss_pred HHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 694 EMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 694 ~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
+. .+++|+.|++++|.-.
T Consensus 353 --p~---~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 353 --PE---LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp --CC---CCTTCCEEECCSSCCS
T ss_pred --cc---hhhhccEEECCCCCCC
Confidence 22 3577888888877653
No 113
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.22 E-value=1.6e-11 Score=146.56 Aligned_cols=204 Identities=18% Similarity=0.170 Sum_probs=147.4
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
+++++|||++|+|+......| ..+++|++|+|++|+|+..... .++..++|++|+|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f------~~l~~L~~L~Ls~N~i~~i~~~--------------~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSF------FSFPELQVLDLSRCEIQTIEDG--------------AYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTT------TTCTTCCEEECTTCCCCEECTT--------------TTTTCTTCCEEECTTCC
T ss_pred cCCCEEEeeCCCCCCCCHHHH------hCCCCCCEEECCCCcCCCcChh--------------HhcCCCCCCEEEccCCc
Confidence 589999999999987765555 3457999999999998732211 12334679999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
|+.-. ...|..+++|++|+|++|.|+... ...|..+++|++|+|++|.+... .++..+..+++|++|++
T Consensus 112 l~~l~----~~~f~~L~~L~~L~Ls~N~l~~l~----~~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 112 IQSLA----LGAFSGLSSLQKLVAVETNLASLE----NFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp CCEEC----GGGGTTCTTCCEEECTTSCCCCST----TCCCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEEC
T ss_pred CCCCC----HHHhcCCCCCCEEECCCCcCCCCC----hhhhhcCcccCeeccccCccccC---CCchhhccchhhhhhcc
Confidence 98532 234677999999999999998632 23467789999999999998742 24556677899999999
Q ss_pred CCCCCCccchHHHHHhccCC-CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~-~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L 705 (999)
++|.++......+.. +... ..+..++++.|.++... ........+..+++.+|.... ......+..+..+
T Consensus 181 ~~N~l~~~~~~~l~~-L~~l~~~~~~~~ls~n~l~~i~-----~~~~~~~~~~~l~l~~n~~~~---~~~~~~~~~l~~l 251 (635)
T 4g8a_A 181 SSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQ-----PGAFKEIRLHKLTLRNNFDSL---NVMKTCIQGLAGL 251 (635)
T ss_dssp CSSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEEC-----TTTTTTCEEEEEEEESCCSSH---HHHHHHHHTTTTC
T ss_pred cCccccccccccccc-hhhhhhhhhhhhcccCcccccC-----cccccchhhhhhhhhcccccc---cccchhhcCCccc
Confidence 999998654444433 3333 45568999999887522 222345567889999887654 3445566777777
Q ss_pred CEEeC
Q psy18075 706 AALVL 710 (999)
Q Consensus 706 ~~L~L 710 (999)
+...+
T Consensus 252 ~~~~l 256 (635)
T 4g8a_A 252 EVHRL 256 (635)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 66644
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=1.8e-11 Score=122.31 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=98.9
Q ss_pred cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHH
Q psy18075 562 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641 (999)
Q Consensus 562 ~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~ 641 (999)
.++|++|+|++|.|++.. ++..+..+++|+.|+|++|.++. + ..+..+++|+.|++++|.++.. ++.
T Consensus 23 ~~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~Ls~N~l~~~----~~~ 89 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLIS-----V-SNLPKLPKLKKLELSENRIFGG----LDM 89 (168)
T ss_dssp TTSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCC-----C-SSCCCCSSCCEEEEESCCCCSC----CCH
T ss_pred cccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCC-----h-hhhccCCCCCEEECcCCcCchH----HHH
Confidence 467888888888877322 34445667888888888888874 2 5667788888888888888753 233
Q ss_pred hccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 642 aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
.+..+++|+.|+|++|.|+.... ...+..+++|++|++++|.++.... .....+..+++|+.|++++|...+
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHhhCCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCChhh
Confidence 34456888899999998876321 1456778889999999998876321 122467788899999888876543
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.17 E-value=1e-11 Score=149.14 Aligned_cols=185 Identities=19% Similarity=0.239 Sum_probs=137.4
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
.+|+.|+|++|.|+..... + +++|++|+|++|+|+... +.+++|+.|+|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~-l--------~~~L~~L~Ls~N~l~~ip------------------~~l~~L~~L~Ls~N~ 111 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDN-L--------PPQITVLEITQNALISLP------------------ELPASLEYLDACDNR 111 (571)
T ss_dssp TTCSEEECCSSCCSCCCSC-C--------CTTCSEEECCSSCCSCCC------------------CCCTTCCEEECCSSC
T ss_pred CCccEEEeCCCCCCccCHh-H--------cCCCCEEECcCCCCcccc------------------cccCCCCEEEccCCC
Confidence 4899999999999764321 1 258999999999997321 123569999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
|+.- +. +.. +|++|+|++|.|+. ++. .+++|+.|+|++|.|+. ++. .+++|+.|+|
T Consensus 112 l~~i-----p~-l~~--~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 112 LSTL-----PE-LPA--SLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTM-----LPE---LPTSLEVLSV 167 (571)
T ss_dssp CSCC-----CC-CCT--TCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEEC
T ss_pred CCCc-----ch-hhc--CCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCc-----CCC---cCCCcCEEEC
Confidence 9852 22 322 89999999999986 333 47899999999999984 333 4679999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhh-ccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM-KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L-~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L 705 (999)
++|.|+.. +. +. ++|+.|+|++|.|+.-.. +...+ ...+.|+.|+|++|.|+. ++..+..+++|
T Consensus 168 s~N~L~~l-----p~-l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~-----lp~~l~~l~~L 232 (571)
T 3cvr_A 168 RNNQLTFL-----PE-LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITH-----IPENILSLDPT 232 (571)
T ss_dssp CSSCCSCC-----CC-CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCC-----CCGGGGGSCTT
T ss_pred CCCCCCCc-----ch-hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCccee-----cCHHHhcCCCC
Confidence 99999752 22 33 899999999999985332 11111 122334999999999985 56667779999
Q ss_pred CEEeCCCCCCCC
Q psy18075 706 AALVLEDDEGEC 717 (999)
Q Consensus 706 ~~L~Ls~N~~e~ 717 (999)
+.|++++|.-..
T Consensus 233 ~~L~L~~N~l~~ 244 (571)
T 3cvr_A 233 CTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSSCCH
T ss_pred CEEEeeCCcCCC
Confidence 999999997643
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.15 E-value=6.8e-11 Score=124.98 Aligned_cols=169 Identities=16% Similarity=0.200 Sum_probs=124.7
Q ss_pred CCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCc
Q psy18075 495 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 574 (999)
Q Consensus 495 ~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~ 574 (999)
.| ..+.++.++++++..- .+-+.+|+.|+|++|+|.... +..|..+++|++|+|++|+
T Consensus 18 ~C-s~~~v~c~~~~l~~ip-----------------~~~~~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 18 SC-SGTTVDCRSKRHASVP-----------------AGIPTNAQILYLHDNQITKLE----PGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp EE-ETTEEECTTSCCSSCC-----------------SCCCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSC
T ss_pred EE-eCCEeEccCCCcCccC-----------------CCCCCCCCEEEcCCCccCccC----HHHhhCccCCcEEECCCCC
Confidence 35 5677888887765221 122356999999999988532 3456678899999999999
Q ss_pred cCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEc
Q psy18075 575 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNL 654 (999)
Q Consensus 575 It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdL 654 (999)
|+... ...|..+++|+.|+|++|.|+. .....+..+++|+.|+|++|.|+. ++..+..+++|+.|+|
T Consensus 76 l~~i~----~~~~~~l~~L~~L~Ls~N~l~~----l~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 76 LGALP----VGVFDSLTQLTVLDLGTNQLTV----LPSAVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLAL 142 (229)
T ss_dssp CCCCC----TTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEEC
T ss_pred CCCcC----hhhcccCCCcCEEECCCCcCCc----cChhHhCcchhhCeEeccCCcccc-----cCcccccCCCCCEEEC
Confidence 97532 2345678999999999999984 223345678899999999999973 4556677899999999
Q ss_pred cCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc--HHHHHHHHhcC
Q psy18075 655 TCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG--VEEMEKLMKSF 702 (999)
Q Consensus 655 s~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg--~~~L~~~L~~l 702 (999)
++|.|+.-. ...+..+++|+.|+|.+|++.... ...+...+...
T Consensus 143 ~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~ 188 (229)
T 3e6j_A 143 DQNQLKSIP----HGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADH 188 (229)
T ss_dssp CSSCCCCCC----TTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHC
T ss_pred CCCcCCccC----HHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhC
Confidence 999998632 245677899999999999987653 45555555443
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.14 E-value=2e-11 Score=126.29 Aligned_cols=128 Identities=23% Similarity=0.267 Sum_probs=66.7
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
.+|++|++++|+++... ...+..+++|++|+|++|.|+.. ....+..+++|++|+|++|.++.. ....
T Consensus 52 ~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~ 119 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLP----NGVFNKLTSLTYLNLSTNQLQSL----PNGVFDKLTQLKELALNTNQLQSL----PDGV 119 (208)
T ss_dssp TTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTT
T ss_pred ccCcEEECCCCccCccC----hhhcCCCCCcCEEECCCCcCCcc----CHhHhcCccCCCEEEcCCCcCccc----CHhH
Confidence 44666666666655321 11234456666666666666532 112344556666666666666521 1223
Q ss_pred ccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 615 L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
+..+++|+.|++++|.++... ...+..+++|+.|+|++|.+.. .++.|+.|++..|.++.
T Consensus 120 ~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~~-----------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQNQLKSVP----DGVFDRLTSLQYIWLHDNPWDC-----------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp TTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSCCBCC-----------CTTTTHHHHHHHHHCTT
T ss_pred hccCCcCCEEECCCCccceeC----HHHhccCCCccEEEecCCCeec-----------CCCCHHHHHHHHHhCCc
Confidence 445566666666666655322 1234445666666666665542 34455555555555543
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=1e-12 Score=157.63 Aligned_cols=104 Identities=21% Similarity=0.307 Sum_probs=49.4
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~ 616 (999)
|+.|+|++|+|+. ++. +..+++|+.|+|++|.|+. ++..+..+++|+.|+|++|.|+. ++ .+.
T Consensus 443 L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~-----lp-~l~ 505 (567)
T 1dce_A 443 VRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALEN-----VD-GVA 505 (567)
T ss_dssp CSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC-----CG-GGT
T ss_pred ceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCC-----Cc-ccC
Confidence 5555555555543 122 4445555555555555541 33444455555555555555542 22 344
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCC
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 660 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~ 660 (999)
.+++|+.|+|++|.|+... .+..+..+++|+.|+|++|+|+
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~---~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp TCSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCcEEECCCCCCCCCC---CcHHHhcCCCCCEEEecCCcCC
Confidence 4555555555555554221 0233444455555555555444
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.13 E-value=2.6e-11 Score=136.80 Aligned_cols=183 Identities=16% Similarity=0.121 Sum_probs=130.3
Q ss_pred ccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCC
Q psy18075 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLE 548 (999)
Q Consensus 469 L~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~ 548 (999)
-+.+++++|.++..... + .+.++.|+|++|+|+......+. +...+|+.|+|++|+|+
T Consensus 20 ~~~l~c~~~~l~~iP~~-~--------~~~l~~L~Ls~N~l~~l~~~~~~-------------~~l~~L~~L~L~~N~i~ 77 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS-L--------PSYTALLDLSHNNLSRLRAEWTP-------------TRLTNLHSLLLSHNHLN 77 (361)
T ss_dssp TTEEECCSSCCSSCCSS-C--------CTTCSEEECCSSCCCEECTTSSS-------------SCCTTCCEEECCSSCCC
T ss_pred CCEEEeCCCCcCccCcc-C--------CCCCCEEECCCCCCCccChhhhh-------------hcccccCEEECCCCcCC
Confidence 36899999998764421 1 14689999999998743322111 03467999999999998
Q ss_pred chhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCC
Q psy18075 549 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628 (999)
Q Consensus 549 d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~ 628 (999)
.... ..|..+++|++|+|++|.|+.. ....|..+++|+.|+|++|.|.. ..+..+..+++|+.|+|++
T Consensus 78 ~i~~----~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 78 FISS----EAFVPVPNLRYLDLSSNHLHTL----DEFLFSDLQALEVLLLYNNHIVV----VDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp EECT----TTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCS
T ss_pred ccCh----hhccCCCCCCEEECCCCcCCcC----CHHHhCCCcCCCEEECCCCcccE----ECHHHhCCcccCCEEECCC
Confidence 5432 3466789999999999999864 23356778999999999999984 2245677889999999999
Q ss_pred CCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCC--cCEEEccCCCCChh
Q psy18075 629 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTK--LKQINVSENQFGEE 690 (999)
Q Consensus 629 N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~s--L~~LdLs~N~Is~e 690 (999)
|.|+......+ ..+..+++|+.|+|++|.|+.-... .+..++. |+.|+|.+|++.-+
T Consensus 146 N~l~~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~----~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 146 NQISRFPVELI-KDGNKLPKLMLLDLSSNKLKKLPLT----DLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp SCCCSCCGGGT-C----CTTCCEEECCSSCCCCCCHH----HHHHSCHHHHTTEECCSSCEECC
T ss_pred CcCCeeCHHHh-cCcccCCcCCEEECCCCCCCccCHH----HhhhccHhhcceEEecCCCccCC
Confidence 99985432111 1114579999999999999875432 3445555 48899999998754
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.13 E-value=8.9e-11 Score=123.39 Aligned_cols=167 Identities=19% Similarity=0.235 Sum_probs=121.3
Q ss_pred CccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCc
Q psy18075 498 ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYH 577 (999)
Q Consensus 498 ~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~ 577 (999)
.-+.+++++|+++.. .. .-+..++.|+|++|+|+.... ...|..+++|++|+|++|.|+.
T Consensus 12 ~~~~l~~s~n~l~~i-----P~------------~~~~~~~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~i~~ 71 (220)
T 2v70_A 12 EGTTVDCSNQKLNKI-----PE------------HIPQYTAELRLNNNEFTVLEA---TGIFKKLPQLRKINFSNNKITD 71 (220)
T ss_dssp ETTEEECCSSCCSSC-----CS------------CCCTTCSEEECCSSCCCEECC---CCCGGGCTTCCEEECCSSCCCE
T ss_pred CCCEeEeCCCCcccC-----cc------------CCCCCCCEEEcCCCcCCccCc---hhhhccCCCCCEEECCCCcCCE
Confidence 346888888887631 11 112457899999999875321 1235678899999999999986
Q ss_pred hhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCC
Q psy18075 578 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 657 (999)
Q Consensus 578 ~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N 657 (999)
.. ...|..+++|++|+|++|.|+. .....+..+++|+.|+|++|.|+... +..+..+++|+.|+|++|
T Consensus 72 i~----~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 72 IE----EGAFEGASGVNEILLTSNRLEN----VQHKMFKGLESLKTLMLRSNRITCVG----NDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp EC----TTTTTTCTTCCEEECCSSCCCC----CCGGGGTTCSSCCEEECTTSCCCCBC----TTSSTTCTTCSEEECTTS
T ss_pred EC----HHHhCCCCCCCEEECCCCccCc----cCHhHhcCCcCCCEEECCCCcCCeEC----HhHcCCCccCCEEECCCC
Confidence 42 3356778999999999999974 23445778899999999999987543 355677899999999999
Q ss_pred CCCCcchhhHHHhhccCCCcCEEEccCCCCChhc-HHHHHHHHh
Q psy18075 658 EISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG-VEEMEKLMK 700 (999)
Q Consensus 658 ~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg-~~~L~~~L~ 700 (999)
.|+.. ....+..+++|+.|+|++|++.... ...+...+.
T Consensus 140 ~l~~~----~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 140 QITTV----APGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp CCCCB----CTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred cCCEE----CHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 99863 2456678899999999999986532 234444443
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=7.2e-12 Score=150.38 Aligned_cols=208 Identities=19% Similarity=0.248 Sum_probs=140.8
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCch---------hhhHHHHHHhhhccCCcCCCCCC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGIT---------GCKLLSKALHDCYESSKKEGSPL 535 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~---------g~~~La~~L~~~~~~s~~~g~~~ 535 (999)
.+++|+.|+|++|.++.. ...+.. |++|+.|++++|..-.. ....+...+..+ .
T Consensus 347 ~~~~L~~L~Ls~n~L~~L-p~~i~~------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l----------~ 409 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVL-QSELES------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF----------S 409 (567)
T ss_dssp TTTTSSSCCCCHHHHHHH-HHHHHH------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH----------H
T ss_pred cCccceeccCChhhHHhh-HHHHHH------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH----------H
Confidence 467899999999987532 122322 35899999977641000 011222233332 3
Q ss_pred CccEEE-ccCCCCCchhHHHHH-HHHhh--cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccc
Q psy18075 536 ALKVFI-AGRNRLENEGAKMLA-AVFKK--LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 536 sLk~L~-Ls~N~L~d~g~~~L~-~~L~~--~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
+|+.|+ ++.|.+.+-....+. ..+.. ...|+.|+|++|.|+. ++. +..+++|+.|+|++|.|+ .+
T Consensus 410 ~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~-----~l 478 (567)
T 1dce_A 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLR-----AL 478 (567)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCC-----CC
T ss_pred hcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-----CcC-ccccccCcEeecCccccc-----cc
Confidence 477777 565554321111111 11222 2368999999999985 344 778899999999999998 46
Q ss_pred cccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
+..+..+++|+.|+|++|.|+. ++ .+..+++|+.|+|++|.|+... .+..+..+++|+.|+|++|+|+...
T Consensus 479 p~~~~~l~~L~~L~Ls~N~l~~-----lp-~l~~l~~L~~L~Ls~N~l~~~~---~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 479 PPALAALRCLEVLQASDNALEN-----VD-GVANLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CGGGGGCTTCCEEECCSSCCCC-----CG-GGTTCSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred chhhhcCCCCCEEECCCCCCCC-----Cc-ccCCCCCCcEEECCCCCCCCCC---CcHHHhcCCCCCEEEecCCcCCCCc
Confidence 7788899999999999999973 33 6788899999999999998631 1566788999999999999987631
Q ss_pred HHHHHHHHhcCCCCCEEeC
Q psy18075 692 VEEMEKLMKSFGMAAALVL 710 (999)
Q Consensus 692 ~~~L~~~L~~l~~L~~L~L 710 (999)
..+...+..+++|+.|++
T Consensus 550 -~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 -GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -SCTTHHHHHCTTCSEEEC
T ss_pred -cHHHHHHHHCcccCccCC
Confidence 123344566788888864
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=6.6e-11 Score=118.24 Aligned_cols=139 Identities=20% Similarity=0.249 Sum_probs=95.1
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
+++|+.|++++|++.+.. ++..+..+++|+.|+|++|.|+.. ..+..+++|++|+|++|.+... ++.
T Consensus 23 ~~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~ 89 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDM 89 (168)
T ss_dssp TTSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCH
T ss_pred cccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHH
Confidence 456777777777776322 223355677888888888887753 4556678888888888888742 444
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
.+..+++|+.|++++|.+++... ...+..+++|+.|+|++|.++.... .....+..+++|++|++++|.+..
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHhhCCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCChhh
Confidence 45557788888888888864321 1456677888888888888875432 112356778888888888887754
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.08 E-value=1.6e-10 Score=113.13 Aligned_cols=134 Identities=18% Similarity=0.165 Sum_probs=92.1
Q ss_pred cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHH
Q psy18075 562 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641 (999)
Q Consensus 562 ~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~ 641 (999)
.++|++|++++|.|++.. ++..+..+++|+.|+|++|.+... ..+..+++|+.|++++|.++.. ++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTTB---CCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THH
T ss_pred CccCeEEEccCCcCChhH---HHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHH
Confidence 356777777777776322 334456677888888888887742 5566778888888888888742 344
Q ss_pred hccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCC
Q psy18075 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 712 (999)
Q Consensus 642 aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~ 712 (999)
.+..+++|++|++++|.|++.. ....+..+++|++|++++|.++.... .....+..+++|+.|++++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTBC
T ss_pred HhhhCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCCC
Confidence 4555688888888888887521 22567778888888888888866321 1224677788888887753
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.08 E-value=2e-10 Score=120.72 Aligned_cols=165 Identities=19% Similarity=0.245 Sum_probs=119.4
Q ss_pred ccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCch
Q psy18075 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 578 (999)
Q Consensus 499 L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~ 578 (999)
-+.+++++++++..- . +-+.+|+.|+|++|+|+.... ..|..+++|+.|+|++|.|+..
T Consensus 13 ~~~v~c~~~~l~~iP-----~------------~l~~~l~~L~l~~n~i~~i~~----~~~~~l~~L~~L~Ls~N~i~~~ 71 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIP-----T------------NLPETITEIRLEQNTIKVIPP----GAFSPYKKLRRIDLSNNQISEL 71 (220)
T ss_dssp TTEEECTTSCCSSCC-----S------------SCCTTCCEEECCSSCCCEECT----TSSTTCTTCCEEECCSSCCCEE
T ss_pred CCEEEcCCCCcCcCC-----C------------ccCcCCCEEECCCCcCCCcCH----hHhhCCCCCCEEECCCCcCCCc
Confidence 456777777765211 1 112469999999999885332 2456688999999999999854
Q ss_pred hhhhhhHHhhhcccCceeeccCCCCCcCCcccccc-cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCC
Q psy18075 579 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ-ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 657 (999)
Q Consensus 579 g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~-aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N 657 (999)
.+..|..+++|++|+|++|.|+. +.. .+..+++|+.|+|++|.|+... +..+..+++|+.|+|++|
T Consensus 72 ----~~~~~~~l~~L~~L~Ls~N~l~~-----l~~~~f~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 72 ----APDAFQGLRSLNSLVLYGNKITE-----LPKSLFEGLFSLQLLLLNANKINCLR----VDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp ----CTTTTTTCSSCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSS
T ss_pred ----CHHHhhCCcCCCEEECCCCcCCc-----cCHhHccCCCCCCEEECCCCCCCEeC----HHHcCCCCCCCEEECCCC
Confidence 34567778999999999999883 333 3567889999999999987543 356677899999999999
Q ss_pred CCCCcchhhHHHhhccCCCcCEEEccCCCCChh-cHHHHHHHHhc
Q psy18075 658 EISVQGGLDLVKAMKNKTKLKQINVSENQFGEE-GVEEMEKLMKS 701 (999)
Q Consensus 658 ~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e-g~~~L~~~L~~ 701 (999)
.|+... ...+..+++|+.|+|++|++..+ ....+...+..
T Consensus 139 ~l~~~~----~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~ 179 (220)
T 2v9t_B 139 KLQTIA----KGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHT 179 (220)
T ss_dssp CCSCCC----TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred cCCEEC----HHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHh
Confidence 998643 23466788999999999998653 23344444443
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.07 E-value=1.5e-10 Score=122.39 Aligned_cols=179 Identities=19% Similarity=0.178 Sum_probs=127.3
Q ss_pred cccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCC
Q psy18075 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 547 (999)
Q Consensus 468 sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L 547 (999)
+.+.++.+++.++..... + .++|++|+|++|.|+...... ++...+|++|+|++|+|
T Consensus 20 s~~~v~c~~~~l~~ip~~-~--------~~~L~~L~Ls~n~i~~~~~~~--------------~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAG-I--------PTNAQILYLHDNQITKLEPGV--------------FDSLINLKELYLGSNQL 76 (229)
T ss_dssp ETTEEECTTSCCSSCCSC-C--------CTTCSEEECCSSCCCCCCTTT--------------TTTCTTCCEEECCSSCC
T ss_pred eCCEeEccCCCcCccCCC-C--------CCCCCEEEcCCCccCccCHHH--------------hhCccCCcEEECCCCCC
Confidence 567899999988765521 1 258999999999987432221 22346799999999998
Q ss_pred CchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcC
Q psy18075 548 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627 (999)
Q Consensus 548 ~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs 627 (999)
+... ...|..+++|+.|+|++|.|+.. ....+..+++|+.|+|++|.|. .++..+..+++|+.|+|+
T Consensus 77 ~~i~----~~~~~~l~~L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 77 GALP----VGVFDSLTQLTVLDLGTNQLTVL----PSAVFDRLVHLKELFMCCNKLT-----ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp CCCC----TTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCC-----SCCTTGGGCTTCSEEECC
T ss_pred CCcC----hhhcccCCCcCEEECCCCcCCcc----ChhHhCcchhhCeEeccCCccc-----ccCcccccCCCCCEEECC
Confidence 7432 13456789999999999999854 2334667899999999999998 466777889999999999
Q ss_pred CCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcc--hhhHHHhhccCCCcCEEEccCCCC
Q psy18075 628 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG--GLDLVKAMKNKTKLKQINVSENQF 687 (999)
Q Consensus 628 ~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g--~~~L~~~L~~~~sL~~LdLs~N~I 687 (999)
+|.|+... ...+..+++|+.|+|++|++.... ...+...+.... -....++++.+
T Consensus 144 ~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~-~~~~~~~g~~v 200 (229)
T 3e6j_A 144 QNQLKSIP----HGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHT-SIAMRWDGKAV 200 (229)
T ss_dssp SSCCCCCC----TTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCG-GGEEEESSSEE
T ss_pred CCcCCccC----HHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCc-cccccccCccc
Confidence 99997433 245677899999999999988653 334444443322 22334445443
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.07 E-value=1.4e-10 Score=130.82 Aligned_cols=183 Identities=21% Similarity=0.218 Sum_probs=133.9
Q ss_pred CccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHh-hcccccccccCCCccC
Q psy18075 498 ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK-KLKTLERVEMPQNGIY 576 (999)
Q Consensus 498 ~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~-~~~sLe~LdLs~N~It 576 (999)
.-+.+++++++|+.. .. +-+..++.|+|++|+|+.... ..+. .+++|+.|+|++|.|+
T Consensus 19 ~~~~l~c~~~~l~~i-----P~------------~~~~~l~~L~Ls~N~l~~l~~----~~~~~~l~~L~~L~L~~N~i~ 77 (361)
T 2xot_A 19 ASNILSCSKQQLPNV-----PQ------------SLPSYTALLDLSHNNLSRLRA----EWTPTRLTNLHSLLLSHNHLN 77 (361)
T ss_dssp ETTEEECCSSCCSSC-----CS------------SCCTTCSEEECCSSCCCEECT----TSSSSCCTTCCEEECCSSCCC
T ss_pred CCCEEEeCCCCcCcc-----Cc------------cCCCCCCEEECCCCCCCccCh----hhhhhcccccCEEECCCCcCC
Confidence 356889999888631 11 123459999999999986432 2344 6889999999999998
Q ss_pred chhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccC
Q psy18075 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 656 (999)
Q Consensus 577 ~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~ 656 (999)
... ..+|..+++|+.|+|++|.|.. .....+..+++|+.|+|++|.|+... +..+..+++|+.|+|++
T Consensus 78 ~i~----~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 78 FIS----SEAFVPVPNLRYLDLSSNHLHT----LDEFLFSDLQALEVLLLYNNHIVVVD----RNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp EEC----TTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCS
T ss_pred ccC----hhhccCCCCCCEEECCCCcCCc----CCHHHhCCCcCCCEEECCCCcccEEC----HHHhCCcccCCEEECCC
Confidence 642 3457778999999999999984 22345678899999999999998543 35677789999999999
Q ss_pred CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC--CCEEeCCCCCCCCC
Q psy18075 657 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM--AAALVLEDDEGECS 718 (999)
Q Consensus 657 N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~--L~~L~Ls~N~~e~e 718 (999)
|.|+.-....+ ..+..+++|+.|+|++|.|+.-... .+..++. ++.|++++|....+
T Consensus 146 N~l~~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~----~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 146 NQISRFPVELI-KDGNKLPKLMLLDLSSNKLKKLPLT----DLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp SCCCSCCGGGT-C----CTTCCEEECCSSCCCCCCHH----HHHHSCHHHHTTEECCSSCEECC
T ss_pred CcCCeeCHHHh-cCcccCCcCCEEECCCCCCCccCHH----HhhhccHhhcceEEecCCCccCC
Confidence 99987433221 1125689999999999999874433 3445555 47899999876654
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.06 E-value=1.3e-10 Score=122.06 Aligned_cols=157 Identities=19% Similarity=0.229 Sum_probs=119.0
Q ss_pred ccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCC
Q psy18075 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLE 548 (999)
Q Consensus 469 L~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~ 548 (999)
-+.+++++|.++..... + .+.+++|+|++|.|+...... .+ +..++|+.|+|++|+|+
T Consensus 13 ~~~l~~s~n~l~~iP~~-~--------~~~~~~L~L~~N~l~~~~~~~---~~----------~~l~~L~~L~L~~N~i~ 70 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEH-I--------PQYTAELRLNNNEFTVLEATG---IF----------KKLPQLRKINFSNNKIT 70 (220)
T ss_dssp TTEEECCSSCCSSCCSC-C--------CTTCSEEECCSSCCCEECCCC---CG----------GGCTTCCEEECCSSCCC
T ss_pred CCEeEeCCCCcccCccC-C--------CCCCCEEEcCCCcCCccCchh---hh----------ccCCCCCEEECCCCcCC
Confidence 46899999999764421 1 246899999999987432111 11 22356999999999998
Q ss_pred chhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCC
Q psy18075 549 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628 (999)
Q Consensus 549 d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~ 628 (999)
... ...|..+++|++|+|++|.|+.. ....|..+++|++|+|++|.|.. ..+..+..+++|+.|+|++
T Consensus 71 ~i~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 71 DIE----EGAFEGASGVNEILLTSNRLENV----QHKMFKGLESLKTLMLRSNRITC----VGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp EEC----TTTTTTCTTCCEEECCSSCCCCC----CGGGGTTCSSCCEEECTTSCCCC----BCTTSSTTCTTCSEEECTT
T ss_pred EEC----HHHhCCCCCCCEEECCCCccCcc----CHhHhcCCcCCCEEECCCCcCCe----ECHhHcCCCccCCEEECCC
Confidence 542 23567789999999999999864 23457779999999999999985 2345677889999999999
Q ss_pred CCCCccchHHHHHhccCCCCCCEEEccCCCCCCcc
Q psy18075 629 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 663 (999)
Q Consensus 629 N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g 663 (999)
|.|+... +..+..+++|+.|+|++|++....
T Consensus 139 N~l~~~~----~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 139 NQITTVA----PGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCBC----TTTTTTCTTCCEEECCSCCEECSG
T ss_pred CcCCEEC----HHHhcCCCCCCEEEecCcCCcCCC
Confidence 9998543 456777899999999999987543
No 128
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.04 E-value=1e-10 Score=122.95 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=121.0
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~ 616 (999)
-+.++++++.++. ++..+ .++|++|+|++|.|+... ...|..+++|+.|+|++|.|+. ..+.++.
T Consensus 13 ~~~v~c~~~~l~~-----iP~~l--~~~l~~L~l~~n~i~~i~----~~~~~~l~~L~~L~Ls~N~i~~----~~~~~~~ 77 (220)
T 2v9t_B 13 NNIVDCRGKGLTE-----IPTNL--PETITEIRLEQNTIKVIP----PGAFSPYKKLRRIDLSNNQISE----LAPDAFQ 77 (220)
T ss_dssp TTEEECTTSCCSS-----CCSSC--CTTCCEEECCSSCCCEEC----TTSSTTCTTCCEEECCSSCCCE----ECTTTTT
T ss_pred CCEEEcCCCCcCc-----CCCcc--CcCCCEEECCCCcCCCcC----HhHhhCCCCCCEEECCCCcCCC----cCHHHhh
Confidence 4678898888774 22222 368999999999998642 2356778999999999999984 2356778
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHH
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 696 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~ 696 (999)
.+++|+.|+|++|.|+... ...+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|.|+... .
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~----~~~f~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~ 145 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELP----KSLFEGLFSLQLLLLNANKINCLR----VDAFQDLHNLNLLSLYDNKLQTIA----K 145 (220)
T ss_dssp TCSSCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCC----T
T ss_pred CCcCCCEEECCCCcCCccC----HhHccCCCCCCEEECCCCCCCEeC----HHHcCCCCCCCEEECCCCcCCEEC----H
Confidence 8999999999999998432 234567799999999999998742 346778999999999999998742 2
Q ss_pred HHHhcCCCCCEEeCCCCCCCC
Q psy18075 697 KLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 697 ~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
..+..+++|+.|++++|....
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEEC
T ss_pred HHHhCCCCCCEEEeCCCCcCC
Confidence 356788999999999997655
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.04 E-value=1.2e-10 Score=113.96 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=91.0
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
+.+|+.|++++|.+.+.. ++..+..+++|+.|+|++|.|+.. ..+..+++|++|+|++|.++.. ++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTTB---CCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THH
T ss_pred CccCeEEEccCCcCChhH---HHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHH
Confidence 355777777777776322 223345577888888888887753 4556678888888888888742 445
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEcc
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 683 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs 683 (999)
.+..+++|+.|++++|.+++.. ....+..+++|++|++++|.++.... .....+..+++|+.|+++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred HhhhCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence 5556778888888888886421 23566777888888888888876432 112456678888888875
No 130
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.99 E-value=6.1e-10 Score=115.13 Aligned_cols=136 Identities=22% Similarity=0.249 Sum_probs=105.1
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
+.+|++|++++|+++... ...+..+++|++|+|++|.|+.. ....+..+++|++|+|++|.++.- ...
T Consensus 27 ~~~l~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~ 94 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLP----NGVFDELTSLTQLYLGGNKLQSL----PNGVFNKLTSLTYLNLSTNQLQSL----PNG 94 (208)
T ss_dssp CTTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTT
T ss_pred CCCCcEEEcCCCccCcCC----hhhhcccccCcEEECCCCccCcc----ChhhcCCCCCcCEEECCCCcCCcc----CHh
Confidence 356999999999988532 22456789999999999999853 233456789999999999998842 233
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
.+..+++|+.|++++|.++... ...+..+++|+.|+|++|.|+... ...+..+++|++|+|++|.+..
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLP----DGVFDKLTQLKDLRLYQNQLKSVP----DGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSCCBCC
T ss_pred HhcCccCCCEEEcCCCcCcccC----HhHhccCCcCCEEECCCCccceeC----HHHhccCCCccEEEecCCCeec
Confidence 4677899999999999997433 234667799999999999998632 2346778999999999998764
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.93 E-value=4.3e-10 Score=138.77 Aligned_cols=154 Identities=17% Similarity=0.165 Sum_probs=84.8
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchh-----hhHHHHHHhhhccCCcCCCCCCCccEEE
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITG-----CKLLSKALHDCYESSKKEGSPLALKVFI 541 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g-----~~~La~~L~~~~~~s~~~g~~~sLk~L~ 541 (999)
+.++.|+|++|.+...... .|+.++|+.|.|.... ...... .+.....|+.|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~------------~l~~l~Ls~~~i~~~~~~~n~~~~~~~----------~~~~l~~L~~L~ 230 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA------------LLQHKKLSQYSIDEDDDIENRMVMPKD----------SKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CccceEEeeCCCCCcchhh------------HhhcCccCcccccCccccccceecChh----------hhccCCCCcEEE
Confidence 4677888888877553211 2444455555443221 111111 223346688889
Q ss_pred ccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCC
Q psy18075 542 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 621 (999)
Q Consensus 542 Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL 621 (999)
|++|++.. ++..+..+++|++|+|++|.|+. ++..|..+++|+.|+|++|.|+ .++..+..+++|
T Consensus 231 Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L 295 (727)
T 4b8c_D 231 LSNLQIFN-----ISANIFKYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLT-----SLPAELGSCFQL 295 (727)
T ss_dssp CTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCS-----SCCSSGGGGTTC
T ss_pred CCCCCCCC-----CChhhcCCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCC-----ccChhhcCCCCC
Confidence 98888873 33344567888889999888872 5666778888999999988887 366777788888
Q ss_pred cEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCc
Q psy18075 622 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 662 (999)
Q Consensus 622 ~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~ 662 (999)
+.|+|++|.|+. |+..+..+++|+.|+|++|.|+..
T Consensus 296 ~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 296 KYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp SEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCCC
Confidence 999998888862 455577788888999999988763
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.92 E-value=4.4e-11 Score=123.23 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=84.6
Q ss_pred HHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCcc
Q psy18075 555 LAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 634 (999)
Q Consensus 555 L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~ 634 (999)
++..+..+++|++|+|++|.|+. ++ .+..+++|+.|+|++|.++. ++..+..+++|+.|++++|.++.
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~- 107 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIAS- 107 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEECS-----CSSHHHHHHHCSEEEEEEEECCC-
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCccc-----ccchhhcCCcCCEEECcCCcCCc-
Confidence 34456667777777777777765 22 55566777777777777662 34444445677777777777763
Q ss_pred chHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc------HHHHHHHHhcCCCCCEE
Q psy18075 635 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG------VEEMEKLMKSFGMAAAL 708 (999)
Q Consensus 635 g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg------~~~L~~~L~~l~~L~~L 708 (999)
. + .+..+++|+.|+|++|.|+..+. ...+..+++|++|++++|++.... .......+..+++|+.|
T Consensus 108 -l---~-~~~~l~~L~~L~l~~N~i~~~~~---~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 108 -L---S-GIEKLVNLRVLYMSNNKITNWGE---IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp -H---H-HHHHHHHSSEEEESEEECCCHHH---HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred -C---C-ccccCCCCCEEECCCCcCCchhH---HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 2 2 34445777777777777775221 135667777777777777765431 22334556777778877
Q ss_pred e
Q psy18075 709 V 709 (999)
Q Consensus 709 ~ 709 (999)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.92 E-value=5.2e-10 Score=112.97 Aligned_cols=134 Identities=15% Similarity=0.204 Sum_probs=68.7
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhc-ccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~-~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
+.+|+.|++++|+++.- . .+..+ ++|+.|+|++|.|+.. ..+..+++|++|+|++|.|+. ++
T Consensus 18 ~~~L~~L~l~~n~l~~i-----~-~~~~~~~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~-----~~ 80 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-----E-NLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICR-----IG 80 (176)
T ss_dssp TTSCEEEECTTSCCCSC-----C-CGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCE-----EC
T ss_pred cCCceEEEeeCCCCchh-----H-HhhhcCCCCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccc-----cC
Confidence 34566666666665531 1 12222 2666666666666542 334455666666666666652 22
Q ss_pred cc-ccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCC
Q psy18075 613 QA-LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 688 (999)
Q Consensus 613 ~a-L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is 688 (999)
.. +..+++|+.|++++|.+++... ...+..+++|+.|++++|+++.... .....+..+++|+.||+++|.+.
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~L~l~~N~i~~~~~-~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVELGD---LDPLASLKSLTYLCILRNPVTNKKH-YRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCCGGG---GGGGGGCTTCCEEECCSSGGGGSTT-HHHHHHHHCTTCSEETTEECCHH
T ss_pred cchhhcCCCCCEEECCCCcCCcchh---hHhhhcCCCCCEEEecCCCCCCcHh-HHHHHHHHCCccceeCCCcCCHH
Confidence 22 2445566666666666643211 1134455666666666666653221 11123445666666666666543
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.90 E-value=2.4e-09 Score=108.02 Aligned_cols=136 Identities=13% Similarity=0.126 Sum_probs=104.2
Q ss_pred hhcccccccccCCCccCchhhhhhhHHhhhc-ccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHH
Q psy18075 560 KKLKTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 638 (999)
Q Consensus 560 ~~~~sLe~LdLs~N~It~~g~~~La~aL~~~-~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~ 638 (999)
..+.+|++|+|++|.|+.. . .+..+ ++|+.|+|++|.|+. + ..+..+++|+.|++++|.|+....
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-----~-~~~~~~~~L~~L~Ls~N~l~~-----~-~~l~~l~~L~~L~Ls~N~l~~~~~-- 81 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-----E-NLGATLDQFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIGE-- 81 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-----C-CGGGGTTCCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEECS--
T ss_pred CCcCCceEEEeeCCCCchh-----H-HhhhcCCCCCEEECCCCCCCc-----c-cccccCCCCCEEECCCCcccccCc--
Confidence 3467899999999999852 2 23334 499999999999984 3 567789999999999999985431
Q ss_pred HHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 639 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 639 La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
..+..+++|+.|+|++|.|+.-.. ...+..+++|+.|++++|+++.... .....+..+++|+.|++++|..
T Consensus 82 --~~~~~l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~L~l~~N~i~~~~~-~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 82 --GLDQALPDLTELILTNNSLVELGD---LDPLASLKSLTYLCILRNPVTNKKH-YRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp --CHHHHCTTCCEEECCSCCCCCGGG---GGGGGGCTTCCEEECCSSGGGGSTT-HHHHHHHHCTTCSEETTEECCH
T ss_pred --chhhcCCCCCEEECCCCcCCcchh---hHhhhcCCCCCEEEecCCCCCCcHh-HHHHHHHHCCccceeCCCcCCH
Confidence 223557999999999999976321 1267789999999999999975322 2234578899999999988754
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=4.5e-11 Score=123.14 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=55.0
Q ss_pred hcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHH
Q psy18075 561 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 640 (999)
Q Consensus 561 ~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La 640 (999)
.+++|+.|+|++|.|+. ++..+..+++|+.|+|++|.++. +. .+..+++|+.|++++|.+++.+. +
T Consensus 68 ~l~~L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~-----l~-~~~~l~~L~~L~l~~N~i~~~~~--~- 133 (198)
T 1ds9_A 68 GMENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIAS-----LS-GIEKLVNLRVLYMSNNKITNWGE--I- 133 (198)
T ss_dssp HHTTCCEEEEEEEEECS-----CSSHHHHHHHCSEEEEEEEECCC-----HH-HHHHHHHSSEEEESEEECCCHHH--H-
T ss_pred cCCCCCEEECCCCCccc-----ccchhhcCCcCCEEECcCCcCCc-----CC-ccccCCCCCEEECCCCcCCchhH--H-
Confidence 34455555555554442 22333334555555555555542 11 23344455555555555542211 1
Q ss_pred HhccCCCCCCEEEccCCCCCCcc------hhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 641 KYLTDNTTLEDVNLTCNEISVQG------GLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 641 ~aL~~~~~L~~LdLs~N~I~~~g------~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
..+..+++|+.|++++|++.... .......+..+++|+.|| +|.++.
T Consensus 134 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 134 DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 23445566666666666554320 112234466677777775 666654
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.83 E-value=1.7e-09 Score=111.05 Aligned_cols=110 Identities=21% Similarity=0.273 Sum_probs=50.9
Q ss_pred cccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhc
Q psy18075 564 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643 (999)
Q Consensus 564 sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL 643 (999)
+|++|+|++|.|+..... ..+..+++|++|+|++|.|+. ..+.++..+++|+.|+|++|.|+... +..+
T Consensus 30 ~l~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~ 98 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTG----IEPNAFEGASHIQELQLGENKIKEIS----NKMF 98 (192)
T ss_dssp TCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSCCCCEEC----SSSS
T ss_pred CCCEEECCCCcCCccCCc---cccccCCCCCEEECCCCCCCC----cCHhHcCCcccCCEEECCCCcCCccC----HHHh
Confidence 445555555554432100 013344555555555555542 12334444555555555555554221 1233
Q ss_pred cCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCC
Q psy18075 644 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 688 (999)
Q Consensus 644 ~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is 688 (999)
..+++|++|+|++|+|+.. .+..+..+++|++|+|++|++.
T Consensus 99 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCV----MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCCCCCEEECCCCcCCee----CHHHhhcCCCCCEEEeCCCCcc
Confidence 4445555555555555531 1223444555555555555554
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.81 E-value=1.9e-09 Score=133.13 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=95.3
Q ss_pred CCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchh-----HHHHHHHHhhcccccccccC
Q psy18075 497 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEG-----AKMLAAVFKKLKTLERVEMP 571 (999)
Q Consensus 497 ~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g-----~~~L~~~L~~~~sLe~LdLs 571 (999)
+.++.|.|.+|++..... ..|+.++|+.|.|.... .......+..++.|+.|+|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~--------------------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls 232 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ--------------------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLS 232 (727)
T ss_dssp ---------------------------------------------------------------------CCCCCCEEECT
T ss_pred CccceEEeeCCCCCcchh--------------------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECC
Confidence 368889998888764211 11344444444443221 22345667788999999999
Q ss_pred CCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCE
Q psy18075 572 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 651 (999)
Q Consensus 572 ~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~ 651 (999)
+|.|.. ++..+..+++|++|+|++|.|+ .++..+..+++|+.|+|++|.|+. |+..+..+++|+.
T Consensus 233 ~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 233 NLQIFN-----ISANIFKYDFLTRLYLNGNSLT-----ELPAEIKNLSNLRVLDLSHNRLTS-----LPAELGSCFQLKY 297 (727)
T ss_dssp TSCCSC-----CCGGGGGCCSCSCCBCTTSCCS-----CCCGGGGGGTTCCEEECTTSCCSS-----CCSSGGGGTTCSE
T ss_pred CCCCCC-----CChhhcCCCCCCEEEeeCCcCc-----ccChhhhCCCCCCEEeCcCCcCCc-----cChhhcCCCCCCE
Confidence 999984 4555667899999999999998 467778889999999999999972 4666778899999
Q ss_pred EEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 652 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 652 LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
|+|++|.|+. ++..+..+++|+.|+|++|.|+..
T Consensus 298 L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 298 FYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp EECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCSH
T ss_pred EECCCCCCCc-----cChhhhcCCCccEEeCCCCccCCC
Confidence 9999999974 455688899999999999999864
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.78 E-value=4.5e-09 Score=108.27 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=92.9
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~ 616 (999)
-+.+++++|.|+. ++..+ .++|++|+|++|.|+. ++..+..+++|+.|+|++|.|+. ....++.
T Consensus 12 ~~~l~~~~~~l~~-----ip~~~--~~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~----i~~~~f~ 75 (193)
T 2wfh_A 12 DTVVRCSNKGLKV-----LPKGI--PRDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRIST----LSNQSFS 75 (193)
T ss_dssp TTEEECTTSCCSS-----CCSCC--CTTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCC----CCTTTTT
T ss_pred CCEEEcCCCCCCc-----CCCCC--CCCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCE----eCHhHcc
Confidence 3566777776653 12111 3477888888888773 44567777888888888888874 2234566
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh-cHHHH
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE-GVEEM 695 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e-g~~~L 695 (999)
.+++|+.|+|++|.|+... +.++..+++|+.|+|++|.|+.-. ...+..+++|+.|+|++|++.-+ ....+
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~~~C~c~l~~l 147 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIP----PRTFDGLKSLRLLSLHGNDISVVP----EGAFNDLSALSHLAIGANPLYCDCNMQWL 147 (193)
T ss_dssp TCTTCCEEECCSSCCCBCC----TTTTTTCTTCCEEECCSSCCCBCC----TTTTTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred CCCCCCEEECCCCccCEeC----HHHhCCCCCCCEEECCCCCCCeeC----hhhhhcCccccEEEeCCCCeecCCcCHHH
Confidence 7788888888888887433 345666788888888888887522 23456778888888888887542 23344
Q ss_pred HHHHh
Q psy18075 696 EKLMK 700 (999)
Q Consensus 696 ~~~L~ 700 (999)
...+.
T Consensus 148 ~~~~~ 152 (193)
T 2wfh_A 148 SDWVK 152 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.75 E-value=7.9e-09 Score=106.07 Aligned_cols=134 Identities=21% Similarity=0.307 Sum_probs=102.1
Q ss_pred CccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCc
Q psy18075 498 ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYH 577 (999)
Q Consensus 498 ~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~ 577 (999)
.-+.|++++|+|+..- . .-+.+|+.|++++|+|+..... ..+..+++|++|+|++|.|+.
T Consensus 9 ~~~~l~~s~~~l~~ip-----~------------~~~~~l~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~Ls~N~l~~ 68 (192)
T 1w8a_A 9 EGTTVDCTGRGLKEIP-----R------------DIPLHTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTG 68 (192)
T ss_dssp ETTEEECTTSCCSSCC-----S------------CCCTTCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCC
T ss_pred CCCEEEcCCCCcCcCc-----c------------CCCCCCCEEECCCCcCCccCCc---cccccCCCCCEEECCCCCCCC
Confidence 3478899998885221 1 1123699999999998753221 136678999999999999986
Q ss_pred hhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCC
Q psy18075 578 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 657 (999)
Q Consensus 578 ~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N 657 (999)
. .+.+|..+++|+.|+|++|.|+. .....+..+++|+.|+|++|.|+.. .+..+...++|++|+|++|
T Consensus 69 ~----~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 69 I----EPNAFEGASHIQELQLGENKIKE----ISNKMFLGLHQLKTLNLYDNQISCV----MPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp B----CTTTTTTCTTCCEEECCSCCCCE----ECSSSSTTCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECTTC
T ss_pred c----CHhHcCCcccCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCCee----CHHHhhcCCCCCEEEeCCC
Confidence 4 35567788999999999999984 2334577889999999999999843 2456777899999999999
Q ss_pred CCCCcc
Q psy18075 658 EISVQG 663 (999)
Q Consensus 658 ~I~~~g 663 (999)
++....
T Consensus 137 ~l~c~c 142 (192)
T 1w8a_A 137 PFNCNC 142 (192)
T ss_dssp CBCCSG
T ss_pred CccCcC
Confidence 998653
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.73 E-value=2.3e-08 Score=100.65 Aligned_cols=143 Identities=18% Similarity=0.211 Sum_probs=86.6
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~ 616 (999)
.+.+++++|++.... .. ..++|++|+|++|+|+.. ....+..+++|++|+|++|.++. .....+.
T Consensus 9 ~~~l~~~~~~l~~~p-----~~--~~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~ 73 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-----TG--IPSSATRLELESNKLQSL----PHGVFDKLTQLTKLSLSQNQIQS----LPDGVFD 73 (177)
T ss_dssp TTEEECCSSCCSSCC-----TT--CCTTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCC----CCTTTTT
T ss_pred CCEEEecCCCCccCC-----CC--CCCCCcEEEeCCCcccEe----CHHHhcCcccccEEECCCCcceE----eChhHcc
Confidence 456666666655321 11 135677777777776642 12334556778888888777763 1223345
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc--HHH
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG--VEE 694 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg--~~~ 694 (999)
.+++|+.|++++|.++... ...+..+++|+.|+|++|.|+... ...+..+++|++|+|++|++.... ...
T Consensus 74 ~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~~~~~~l~~ 145 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLP----NGVFDKLTQLKELALDTNQLKSVP----DGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145 (177)
T ss_dssp TCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred CCCccCEEECCCCCccccC----HHHhhCCcccCEEECcCCcceEeC----HHHhcCCcccCEEEecCCCeeccCccHHH
Confidence 6777888888888776332 234556678888888888777422 223456778888888888876532 344
Q ss_pred HHHHHhcC
Q psy18075 695 MEKLMKSF 702 (999)
Q Consensus 695 L~~~L~~l 702 (999)
+...+...
T Consensus 146 l~~~~~~~ 153 (177)
T 2o6r_A 146 LSRWLNKN 153 (177)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhC
Confidence 44455443
No 141
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.73 E-value=4.2e-10 Score=126.29 Aligned_cols=220 Identities=16% Similarity=0.135 Sum_probs=130.3
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|+|++|.++.... .+|..+++|++|+|++|.+... +|.
T Consensus 31 ~l~~L~Ls~N~i~~i~~-------~~f~~l~~L~~L~Ls~N~i~~~-------------------------------i~~ 72 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQK-------GAFSGFGDLEKIEISQNDVLEV-------------------------------IEA 72 (350)
T ss_dssp TCSEEEEESCCCSEECT-------TSSTTCTTCCEEEEECCTTCCE-------------------------------ECT
T ss_pred CCCEEEccCCcCCCcCH-------HHHcCCCCCCEEECcCCCCCCc-------------------------------cCh
Confidence 57788888887742211 2466778888888888876321 000
Q ss_pred HHHHhhhhhhccCCccc-EEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 454 ALRYLGNGLQQAGARLV-ELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~-~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
..+..+++|. .+.+++|+|.......+ ..+++|++|++++|+|+...... ..
T Consensus 73 -------~~f~~L~~l~~~l~~~~N~l~~l~~~~f------~~l~~L~~L~l~~n~l~~~~~~~--------------~~ 125 (350)
T 4ay9_X 73 -------DVFSNLPKLHEIRIEKANNLLYINPEAF------QNLPNLQYLLISNTGIKHLPDVH--------------KI 125 (350)
T ss_dssp -------TSBCSCTTCCEEEEEEETTCCEECTTSB------CCCTTCCEEEEEEECCSSCCCCT--------------TC
T ss_pred -------hHhhcchhhhhhhcccCCcccccCchhh------hhccccccccccccccccCCchh--------------hc
Confidence 0111233444 46677788865543333 23468899999988876322111 11
Q ss_pred CCCCccEEEccC-CCCCchhHHHHHHHHhhc-ccccccccCCCccCchhhhhhhHHhhhcccCceeeccC-CCCCcCCcc
Q psy18075 533 SPLALKVFIAGR-NRLENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND-NTITYKGAI 609 (999)
Q Consensus 533 ~~~sLk~L~Ls~-N~L~d~g~~~L~~~L~~~-~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~-N~Lsd~G~~ 609 (999)
....+..|++.. +++...... .+..+ ..++.|+|++|+|+.. ...+....+|+.|++++ |.++
T Consensus 126 ~~~~l~~l~l~~~~~i~~l~~~----~f~~~~~~l~~L~L~~N~i~~i-----~~~~f~~~~L~~l~l~~~n~l~----- 191 (350)
T 4ay9_X 126 HSLQKVLLDIQDNINIHTIERN----SFVGLSFESVILWLNKNGIQEI-----HNSAFNGTQLDELNLSDNNNLE----- 191 (350)
T ss_dssp CBSSCEEEEEESCTTCCEECTT----SSTTSBSSCEEEECCSSCCCEE-----CTTSSTTEEEEEEECTTCTTCC-----
T ss_pred ccchhhhhhhcccccccccccc----chhhcchhhhhhccccccccCC-----ChhhccccchhHHhhccCCccc-----
Confidence 224577787754 456532211 22233 4678888999988753 33333456788888875 5666
Q ss_pred ccc-ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCC-CCCCcchhhHHHhhccCCCcCEEEccCC
Q psy18075 610 PLG-QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINVSEN 685 (999)
Q Consensus 610 ~L~-~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N-~I~~~g~~~L~~~L~~~~sL~~LdLs~N 685 (999)
.++ .++..+++|+.|+|++|.|+.- +. ....+|++|.+.++ .++. ++ .+..+++|+.+++.++
T Consensus 192 ~i~~~~f~~l~~L~~LdLs~N~l~~l-----p~--~~~~~L~~L~~l~~~~l~~-----lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 192 ELPNDVFHGASGPVILDISRTRIHSL-----PS--YGLENLKKLRARSTYNLKK-----LP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCTTTTTTEECCSEEECTTSCCCCC-----CS--SSCTTCCEEECTTCTTCCC-----CC-CTTTCCSCCEEECSCH
T ss_pred CCCHHHhccCcccchhhcCCCCcCcc-----Ch--hhhccchHhhhccCCCcCc-----CC-CchhCcChhhCcCCCC
Confidence 344 3456778899999999988642 21 12366777776655 3332 22 3567788888888654
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.73 E-value=2.2e-08 Score=103.04 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=99.9
Q ss_pred ccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCch
Q psy18075 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 578 (999)
Q Consensus 499 L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~ 578 (999)
-+.+++++|+|+... . +-+.+|+.|+|++|+|+. ++..|..+++|+.|+|++|.|+..
T Consensus 12 ~~~l~~~~~~l~~ip-----~------------~~~~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i 69 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLP-----K------------GIPRDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTL 69 (193)
T ss_dssp TTEEECTTSCCSSCC-----S------------CCCTTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CCEEEcCCCCCCcCC-----C------------CCCCCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEe
Confidence 467888888876321 1 123469999999999984 335678889999999999999864
Q ss_pred hhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCC
Q psy18075 579 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE 658 (999)
Q Consensus 579 g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~ 658 (999)
....|..+++|+.|+|++|.|+.- .+.++..+++|+.|+|++|.|+... ...+..+++|+.|+|++|+
T Consensus 70 ----~~~~f~~l~~L~~L~Ls~N~l~~i----~~~~f~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 70 ----SNQSFSNMTQLLTLILSYNRLRCI----PPRTFDGLKSLRLLSLHGNDISVVP----EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ----CTTTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECCSSCCCBCC----TTTTTTCTTCCEEECCSSC
T ss_pred ----CHhHccCCCCCCEEECCCCccCEe----CHHHhCCCCCCCEEECCCCCCCeeC----hhhhhcCccccEEEeCCCC
Confidence 234577789999999999999852 2346778899999999999997432 2356677999999999998
Q ss_pred CCCc
Q psy18075 659 ISVQ 662 (999)
Q Consensus 659 I~~~ 662 (999)
+..+
T Consensus 138 ~~C~ 141 (193)
T 2wfh_A 138 LYCD 141 (193)
T ss_dssp EECS
T ss_pred eecC
Confidence 8654
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=4.1e-08 Score=108.99 Aligned_cols=264 Identities=14% Similarity=0.150 Sum_probs=142.1
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhc-CCCcCEEEccCCCCC--hhHHHHHHHHHhhChhhHHHhhhhcccCCCccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINE-VKVLVSLNLEGNTLG--VNAAKAIADALSKHEHFKRALWKDMFTGRMKTE 450 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~-~~~L~~LdLs~N~L~--~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ 450 (999)
.++.|.+.|+ + ...+... +.. +++|+.|||++|.|. ...... .+.++ ...... ..
T Consensus 26 ~l~~L~l~g~-i---~~~~~~~----l~~~l~~L~~LdLs~n~i~~~~~~~~~-------~~~~~---~~~~~~----~~ 83 (329)
T 3sb4_A 26 SITHLTLTGK-L---NAEDFRH----LRDEFPSLKVLDISNAEIKMYSGKAGT-------YPNGK---FYIYMA----NF 83 (329)
T ss_dssp HCSEEEEEEE-E---CHHHHHH----HHHSCTTCCEEEEEEEEECCEEESSSS-------SGGGC---CEEECT----TE
T ss_pred ceeEEEEecc-c---cHHHHHH----HHHhhccCeEEecCcceeEEecCcccc-------ccccc---cccccc----cc
Confidence 5677888875 3 3333333 333 789999999999987 111000 11100 000000 01
Q ss_pred cchHHHHhhhhhhcc--------CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHh
Q psy18075 451 IPDALRYLGNGLQQA--------GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 522 (999)
Q Consensus 451 ip~~l~~L~~~L~~~--------~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~ 522 (999)
+....+.. +++|+.|+|.+ .+...+-..| ..|++|+.|+|.+|.+...+...+..
T Consensus 84 -------I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF------~~~~~L~~l~l~~n~i~~i~~~aF~~--- 146 (329)
T 3sb4_A 84 -------VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF------KGCDNLKICQIRKKTAPNLLPEALAD--- 146 (329)
T ss_dssp -------ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT------TTCTTCCEEEBCCSSCCEECTTSSCT---
T ss_pred -------cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh------hcCcccceEEcCCCCccccchhhhcC---
Confidence 22223334 78888888888 7776665555 45678888888888765433322221
Q ss_pred hhccCCcCCCCCCCccEEEccCCC-------CCch---------------hHHHHHHHHh----hcccccccccCCCccC
Q psy18075 523 DCYESSKKEGSPLALKVFIAGRNR-------LENE---------------GAKMLAAVFK----KLKTLERVEMPQNGIY 576 (999)
Q Consensus 523 ~~~~~s~~~g~~~sLk~L~Ls~N~-------L~d~---------------g~~~L~~~L~----~~~sLe~LdLs~N~It 576 (999)
| .++..+.++.+. +.+. ....+...+. ...++..+.+.++ +.
T Consensus 147 -~----------~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~ 214 (329)
T 3sb4_A 147 -S----------VTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LD 214 (329)
T ss_dssp -T----------TCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CC
T ss_pred -C----------CceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ec
Confidence 1 223333332210 0000 0000111111 1234444545443 33
Q ss_pred chhhhhhhHHhhhcccCceeeccCCCCCcCCccccc-ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCC-EEEc
Q psy18075 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG-QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE-DVNL 654 (999)
Q Consensus 577 ~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~-~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~-~LdL 654 (999)
..+...+ ...+++|+.|+|++|.+.. ++ .++..|.+|+.|+|.+| ++..+ ..++..|.+|+ .|+|
T Consensus 215 ~~~~~~l---~~~~~~L~~l~L~~n~i~~-----I~~~aF~~~~~L~~l~l~~n-i~~I~----~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 215 NADFKLI---RDYMPNLVSLDISKTNATT-----IPDFTFAQKKYLLKIKLPHN-LKTIG----QRVFSNCGRLAGTLEL 281 (329)
T ss_dssp HHHHHHH---HHHCTTCCEEECTTBCCCE-----ECTTTTTTCTTCCEEECCTT-CCEEC----TTTTTTCTTCCEEEEE
T ss_pred HHHHHHH---HHhcCCCeEEECCCCCcce-----ecHhhhhCCCCCCEEECCcc-cceeh----HHHhhCChhccEEEEE
Confidence 2222222 2236788888888877763 33 35566778888888876 55444 24566778888 8888
Q ss_pred cCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeC
Q psy18075 655 TCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVL 710 (999)
Q Consensus 655 s~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~L 710 (999)
.. .++.-+ ..++..|++|+.|++.+|.+..-+ ..++..+++|+.+..
T Consensus 282 ~~-~l~~I~----~~aF~~c~~L~~l~l~~n~i~~I~----~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 282 PA-SVTAIE----FGAFMGCDNLRYVLATGDKITTLG----DELFGNGVPSKLIYK 328 (329)
T ss_dssp CT-TCCEEC----TTTTTTCTTEEEEEECSSCCCEEC----TTTTCTTCCCCEEEC
T ss_pred cc-cceEEc----hhhhhCCccCCEEEeCCCccCccc----hhhhcCCcchhhhcc
Confidence 77 444322 235667888888888888776633 235667777777653
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.63 E-value=7.4e-08 Score=96.93 Aligned_cols=132 Identities=25% Similarity=0.311 Sum_probs=98.8
Q ss_pred CccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCc
Q psy18075 498 ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYH 577 (999)
Q Consensus 498 ~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~ 577 (999)
..+.+++++++++.... +.+.+|+.|++++|+++... ...+..+++|++|+|++|.|+.
T Consensus 8 ~~~~l~~~~~~l~~~p~-----------------~~~~~l~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~ 66 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPT-----------------GIPSSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSQNQIQS 66 (177)
T ss_dssp ETTEEECCSSCCSSCCT-----------------TCCTTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCC
T ss_pred CCCEEEecCCCCccCCC-----------------CCCCCCcEEEeCCCcccEeC----HHHhcCcccccEEECCCCcceE
Confidence 56788888888763221 12346999999999987532 2245668899999999999985
Q ss_pred hhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCC
Q psy18075 578 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 657 (999)
Q Consensus 578 ~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N 657 (999)
. ....+..+++|+.|+|++|.|+. .....+..+++|+.|++++|.++... ...+..+++|++|+|++|
T Consensus 67 ~----~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 67 L----PDGVFDKLTKLTILYLHENKLQS----LPNGVFDKLTQLKELALDTNQLKSVP----DGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp C----CTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSS
T ss_pred e----ChhHccCCCccCEEECCCCCccc----cCHHHhhCCcccCEEECcCCcceEeC----HHHhcCCcccCEEEecCC
Confidence 3 22345678999999999999984 22334667899999999999997432 234566799999999999
Q ss_pred CCCCc
Q psy18075 658 EISVQ 662 (999)
Q Consensus 658 ~I~~~ 662 (999)
++...
T Consensus 135 ~~~~~ 139 (177)
T 2o6r_A 135 PWDCS 139 (177)
T ss_dssp CBCCC
T ss_pred Ceecc
Confidence 98864
No 145
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.59 E-value=4.3e-09 Score=117.99 Aligned_cols=210 Identities=12% Similarity=0.059 Sum_probs=96.7
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCch-hh---hHHHHHHh----h-h--ccC-CcCCCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGIT-GC---KLLSKALH----D-C--YES-SKKEGSP 534 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~-g~---~~La~~L~----~-~--~~~-s~~~g~~ 534 (999)
+++++|+|++|+|+......|. .+++|++|+|++|.+... .. ..+..... . + ..+ +..++..
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~------~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l 103 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFS------GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSST------TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCC
T ss_pred CCCCEEEccCCcCCCcCHHHHc------CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhc
Confidence 4788888888888765544442 346888888888876321 11 11111000 0 0 000 1122334
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCC-CccCchhhhhhhHHhhhc-ccCceeeccCCCCCcCCccccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEEN-KNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~-N~It~~g~~~La~aL~~~-~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
++|++|++++|+|..... ..+.....+..|++.+ +.|+.... ..+..+ ..++.|+|++|.|+ .+.
T Consensus 104 ~~L~~L~l~~n~l~~~~~----~~~~~~~~l~~l~l~~~~~i~~l~~----~~f~~~~~~l~~L~L~~N~i~-----~i~ 170 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLPD----VHKIHSLQKVLLDIQDNINIHTIER----NSFVGLSFESVILWLNKNGIQ-----EIH 170 (350)
T ss_dssp TTCCEEEEEEECCSSCCC----CTTCCBSSCEEEEEESCTTCCEECT----TSSTTSBSSCEEEECCSSCCC-----EEC
T ss_pred cccccccccccccccCCc----hhhcccchhhhhhhccccccccccc----cchhhcchhhhhhcccccccc-----CCC
Confidence 445555555555442110 0111122333444432 23332211 112222 24566666666665 243
Q ss_pred ccccCCCCCcEEEcCC-CCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCC-CChh
Q psy18075 613 QALSKLPSLAILNLGD-CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ-FGEE 690 (999)
Q Consensus 613 ~aL~~l~sL~~LdLs~-N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~-Is~e 690 (999)
..+....+|+.|++.+ |.++... ..++..+++|+.|+|++|+|+.-. . ....+|+.|.+.++. +..
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~----~~~f~~l~~L~~LdLs~N~l~~lp-----~--~~~~~L~~L~~l~~~~l~~- 238 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELP----NDVFHGASGPVILDISRTRIHSLP-----S--YGLENLKKLRARSTYNLKK- 238 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCC----TTTTTTEECCSEEECTTSCCCCCC-----S--SSCTTCCEEECTTCTTCCC-
T ss_pred hhhccccchhHHhhccCCcccCCC----HHHhccCcccchhhcCCCCcCccC-----h--hhhccchHhhhccCCCcCc-
Confidence 3333445666666654 4444221 123445566777777777666421 1 123445555543332 221
Q ss_pred cHHHHHHHHhcCCCCCEEeCCC
Q psy18075 691 GVEEMEKLMKSFGMAAALVLED 712 (999)
Q Consensus 691 g~~~L~~~L~~l~~L~~L~Ls~ 712 (999)
++ .+..+++|+.+++.+
T Consensus 239 ----lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 239 ----LP-TLEKLVALMEASLTY 255 (350)
T ss_dssp ----CC-CTTTCCSCCEEECSC
T ss_pred ----CC-CchhCcChhhCcCCC
Confidence 21 245566777777654
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.55 E-value=1e-07 Score=95.97 Aligned_cols=124 Identities=18% Similarity=0.175 Sum_probs=80.5
Q ss_pred cccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhc
Q psy18075 564 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643 (999)
Q Consensus 564 sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL 643 (999)
..+.|++++|+|+. ++..+ .++|+.|+|++|.|.. ..+..+..+++|+.|+|++|.|+... ...+
T Consensus 10 ~~~~l~~s~n~l~~-----ip~~~--~~~l~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~f 74 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-----VPTGI--PTTTQVLYLYDNQITK----LEPGVFDRLTQLTRLDLDNNQLTVLP----AGVF 74 (170)
T ss_dssp ETTEEECTTSCCSS-----CCSCC--CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCC----TTTT
T ss_pred CCCEEEeCCCCcCc-----cCccC--CCCCcEEEcCCCcCCc----cChhhhcCcccCCEEECCCCCcCccC----hhhc
Confidence 34566666666654 22222 2567777777777763 12445666777888888888776322 2345
Q ss_pred cCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh--cHHHHHHHHhcCCCCC
Q psy18075 644 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GVEEMEKLMKSFGMAA 706 (999)
Q Consensus 644 ~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e--g~~~L~~~L~~l~~L~ 706 (999)
..+++|++|+|++|+|+... ...+..+++|++|+|++|++.-. ....+...+...+.+.
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIP----RGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLV 135 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred cCCCCCCEEECCCCccCEeC----HHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCccee
Confidence 56688888888888887521 23466778888888888888765 3566777777766544
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=4.6e-08 Score=108.53 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=66.3
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcC-EEEccCCCCChhcHHHH
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK-QINVSENQFGEEGVEEM 695 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~-~LdLs~N~Is~eg~~~L 695 (999)
.+++|+.|+|++|.++..+. .++..|.+|+.|+|.+| +..-+ ..++..+++|+ .|++.+ .+..-+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n-i~~I~----~~aF~~~~~L~~~l~l~~-~l~~I~---- 289 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN-LKTIG----QRVFSNCGRLAGTLELPA-SVTAIE---- 289 (329)
T ss_dssp HCTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT-CCEEC----TTTTTTCTTCCEEEEECT-TCCEEC----
T ss_pred hcCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc-cceeh----HHHhhCChhccEEEEEcc-cceEEc----
Confidence 37899999999999886653 56788899999999998 65433 24577899999 999987 554422
Q ss_pred HHHHhcCCCCCEEeCCCCCC
Q psy18075 696 EKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 696 ~~~L~~l~~L~~L~Ls~N~~ 715 (999)
..++..+++|+.+++++|.-
T Consensus 290 ~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp TTTTTTCTTEEEEEECSSCC
T ss_pred hhhhhCCccCCEEEeCCCcc
Confidence 25678999999999977643
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=7.5e-08 Score=98.26 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=46.3
Q ss_pred CccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCc-cCchhhhhhhHHhhhcccCceeeccCC-CCCcCCcccccc
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDN-TITYKGAIPLGQ 613 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~-It~~g~~~La~aL~~~~~Lr~LdLS~N-~Lsd~G~~~L~~ 613 (999)
.|+.|+++++.|++.|+..+ ..+++|++|+|++|. |++.|+..|+..-..+++|++|+|++| .|++.|+..++.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred eEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 35555555555555555433 335555555555553 555555555432111234555555554 355555544432
Q ss_pred cccCCCCCcEEEcCCCC-CCccc
Q psy18075 614 ALSKLPSLAILNLGDCL-LKSAG 635 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~-L~d~g 635 (999)
+++|+.|+|++|. +++.|
T Consensus 138 ----~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 138 ----FRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ----CTTCCEEEEESCTTCCCHH
T ss_pred ----CCCCCEEECCCCCCCCchH
Confidence 4555555555553 44443
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=9.5e-08 Score=97.50 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=53.6
Q ss_pred cccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCC-ccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN-GLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 468 sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n-~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
.|++|||+++.|++.|+..+ ..|++|++|+|++| .|++.|...|+..-..+ ++|++|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~----------~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM------EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQ----------KSMLEMEIISCG 125 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG------TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHH----------HHCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHh------cCCCCCCEEEeCCCCccCHHHHHHHHhccccc----------CCCCEEEcCCCC
Confidence 56777777777777666655 23566777777776 46666666665421001 126666666653
Q ss_pred -CCchhHHHHHHHHhhcccccccccCCCc-cCchh
Q psy18075 547 -LENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVG 579 (999)
Q Consensus 547 -L~d~g~~~L~~~L~~~~sLe~LdLs~N~-It~~g 579 (999)
|++.|+..| ..+++|++|+|++|. |++.|
T Consensus 126 ~ITD~Gl~~L----~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 126 NVTDKGIIAL----HHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp TCCHHHHHHG----GGCTTCCEEEEESCTTCCCHH
T ss_pred cCCHHHHHHH----hcCCCCCEEECCCCCCCCchH
Confidence 666665543 235666666666664 56554
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.42 E-value=2.2e-07 Score=93.56 Aligned_cols=124 Identities=20% Similarity=0.186 Sum_probs=84.3
Q ss_pred CccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccc
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
+.+.+++++|+|+.- +..+ .++|+.|+|++|.|+.. .+..|..+++|+.|+|++|.|+. .....+
T Consensus 10 ~~~~l~~s~n~l~~i-----p~~~--~~~l~~L~L~~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~----l~~~~f 74 (170)
T 3g39_A 10 SGTTVDCSGKSLASV-----PTGI--PTTTQVLYLYDNQITKL----EPGVFDRLTQLTRLDLDNNQLTV----LPAGVF 74 (170)
T ss_dssp ETTEEECTTSCCSSC-----CSCC--CTTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCC----CCTTTT
T ss_pred CCCEEEeCCCCcCcc-----CccC--CCCCcEEEcCCCcCCcc----ChhhhcCcccCCEEECCCCCcCc----cChhhc
Confidence 356777777777632 2211 36788888888888753 24456678888999999888873 122345
Q ss_pred cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCc--chhhHHHhhccCCCcC
Q psy18075 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ--GGLDLVKAMKNKTKLK 678 (999)
Q Consensus 616 ~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~--g~~~L~~~L~~~~sL~ 678 (999)
..+++|+.|+|++|.|+... ...+..+++|+.|+|++|++... ....+...+...+.+.
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIP----RGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLV 135 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred cCCCCCCEEECCCCccCEeC----HHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCccee
Confidence 67888999999999887432 23466778899999999988765 3555666666655444
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.41 E-value=4.1e-07 Score=92.05 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=60.6
Q ss_pred ccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHh
Q psy18075 591 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 670 (999)
Q Consensus 591 ~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~ 670 (999)
++|+.|+|++|.|.. ..+..+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|+|+.-. ...
T Consensus 33 ~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~~~l~~L~~L~L~~N~l~~l~----~~~ 100 (174)
T 2r9u_A 33 TDKQRLWLNNNQITK----LEPGVFDHLVNLQQLYFNSNKLTAIP----TGVFDKLTQLTQLDLNDNHLKSIP----RGA 100 (174)
T ss_dssp TTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCC----TTT
T ss_pred CCCcEEEeCCCCccc----cCHHHhcCCcCCCEEECCCCCCCccC----hhHhCCcchhhEEECCCCccceeC----HHH
Confidence 456667777666653 12344556667777777777665321 123455677777777777776421 123
Q ss_pred hccCCCcCEEEccCCCCChh--cHHHHHHHHhcCC
Q psy18075 671 MKNKTKLKQINVSENQFGEE--GVEEMEKLMKSFG 703 (999)
Q Consensus 671 L~~~~sL~~LdLs~N~Is~e--g~~~L~~~L~~l~ 703 (999)
+..+++|++|+|++|++... .+..+...+....
T Consensus 101 ~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~ 135 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHT 135 (174)
T ss_dssp TTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred hccccCCCEEEeCCCCcccccccHHHHHHHHHhcc
Confidence 56677788888888877654 3455555555443
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.29 E-value=7.3e-07 Score=90.19 Aligned_cols=118 Identities=22% Similarity=0.238 Sum_probs=80.2
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc-cc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ-AL 615 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~-aL 615 (999)
-+.+++++|+++. ++..+ .++|+.|+|++|.|+.. .+..|..+++|+.|+|++|.|+. +.. .+
T Consensus 14 ~~~l~~~~n~l~~-----iP~~~--~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~ 77 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-----VPAGI--PTDKQRLWLNNNQITKL----EPGVFDHLVNLQQLYFNSNKLTA-----IPTGVF 77 (174)
T ss_dssp SSEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCC-----CCTTTT
T ss_pred CcEEEeCCCCCCc-----cCCCc--CCCCcEEEeCCCCcccc----CHHHhcCCcCCCEEECCCCCCCc-----cChhHh
Confidence 4677777777753 22222 36788888888888753 24456678889999999998873 333 34
Q ss_pred cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcc--hhhHHHhhccC
Q psy18075 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG--GLDLVKAMKNK 674 (999)
Q Consensus 616 ~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g--~~~L~~~L~~~ 674 (999)
..+++|+.|+|++|.|+... ...+..+++|+.|+|++|++.... ...+...+...
T Consensus 78 ~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~ 134 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHLKSIP----RGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADH 134 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred CCcchhhEEECCCCccceeC----HHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhc
Confidence 67888999999999887322 234667789999999999887542 34444444433
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.00 E-value=3.8e-06 Score=96.40 Aligned_cols=15 Identities=20% Similarity=0.640 Sum_probs=7.4
Q ss_pred CCCccEEEccCCccC
Q psy18075 496 CFALEELKLNNNGLG 510 (999)
Q Consensus 496 c~~L~~L~Ls~n~Lt 510 (999)
|++|+.++|.+|+++
T Consensus 179 c~~L~~l~l~~n~l~ 193 (401)
T 4fdw_A 179 CYNLKKADLSKTKIT 193 (401)
T ss_dssp CTTCCEEECTTSCCS
T ss_pred cccCCeeecCCCcce
Confidence 445555555554443
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.98 E-value=6e-06 Score=91.77 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=28.4
Q ss_pred hhhcccCceeeccC-CCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCC
Q psy18075 587 FEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 660 (999)
Q Consensus 587 L~~~~~Lr~LdLS~-N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~ 660 (999)
|..+++|+.|+|++ |.|+. .....|..+++|+.|+|++|.|+.. .+.+|..+++|+.|+|++|+|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQH----LELRDLRGLGELRNLTIVKSGLRFV----APDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCE----ECGGGSCSCCCCSEEECCSSCCCEE----CTTGGGSCSCCCEEECCSSCCS
T ss_pred CCCCCCeeEEEccCCCCCCC----cChhHhccccCCCEEECCCCcccee----CHHHhcCCcCCCEEeCCCCccc
Confidence 33444444445443 44442 1112344444555555555544421 1223344455555555555544
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.98 E-value=4.1e-06 Score=96.16 Aligned_cols=213 Identities=14% Similarity=0.217 Sum_probs=124.9
Q ss_pred cchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcC
Q psy18075 451 IPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKK 530 (999)
Q Consensus 451 ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~ 530 (999)
+|..+..++...+..+ +|+.+.|.++ +...+...| ..| +|+.+.|.+ .+...+.. +
T Consensus 120 ip~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF------~~~-~L~~i~lp~-~l~~I~~~----a---------- 175 (401)
T 4fdw_A 120 LPNSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAF------FNS-TVQEIVFPS-TLEQLKED----I---------- 175 (401)
T ss_dssp CCTTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTT------TTC-CCCEEECCT-TCCEECSS----T----------
T ss_pred ECCccCEehHhhcccC-CccEEEeCCC-ccEECHHhc------CCC-CceEEEeCC-CccEehHH----H----------
Confidence 4555555555555444 7999999877 766665555 235 799999986 44322221 1
Q ss_pred CCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccc
Q psy18075 531 EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP 610 (999)
Q Consensus 531 ~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~ 610 (999)
+..+.+|+.++++.|++..-+... |. +.+|+.+.|..+ ++..+- .+|..|++|+.++|..| +. .
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~a----F~-~~~L~~l~lp~~-l~~I~~----~aF~~~~~L~~l~l~~~-l~-----~ 239 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPAST----FV-YAGIEEVLLPVT-LKEIGS----QAFLKTSQLKTIEIPEN-VS-----T 239 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTT----TT-TCCCSEEECCTT-CCEECT----TTTTTCTTCCCEECCTT-CC-----E
T ss_pred hhCcccCCeeecCCCcceEechhh----Ee-ecccCEEEeCCc-hheehh----hHhhCCCCCCEEecCCC-cc-----C
Confidence 223456999999998887544332 22 578888888854 554332 35667888999988765 22 2
Q ss_pred ccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhH-HHhhccCCCcCEEEccCCCCCh
Q psy18075 611 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDL-VKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 611 L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L-~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
+........+|+.+.|.. .++..+ ..++..|++|+.+++.+|.+.......+ ..++..|++|+.++|.. .+..
T Consensus 240 I~~~aF~~~~L~~i~lp~-~i~~I~----~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~ 313 (401)
T 4fdw_A 240 IGQEAFRESGITTVKLPN-GVTNIA----SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI 313 (401)
T ss_dssp ECTTTTTTCCCSEEEEET-TCCEEC----TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE
T ss_pred ccccccccCCccEEEeCC-CccEEC----hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE
Confidence 332222235677777743 344333 2456667777777777765541111111 13456677777777763 3443
Q ss_pred hcHHHHHHHHhcCCCCCEEeCCCC
Q psy18075 690 EGVEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 690 eg~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
-| ..++..+.+|+.+.+..+
T Consensus 314 I~----~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 314 LG----QGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp EC----TTTTTTCCSCCEEEECTT
T ss_pred Eh----hhhhcCCCCccEEEECcc
Confidence 22 134556677777766543
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.88 E-value=6.4e-06 Score=91.51 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=45.9
Q ss_pred HhhcccccccccCC-CccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchH
Q psy18075 559 FKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 637 (999)
Q Consensus 559 L~~~~sLe~LdLs~-N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~ 637 (999)
|..+.+|+.|+|++ |.|+.. ....|..+++|+.|+|++|.|+. .....+..+++|+.|+|++|.|+...
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~-- 96 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSGLRF----VAPDAFHFTPRLSRLNLSFNALESLS-- 96 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEE----CGGGSCSCCCCSEEECCSSCCCE----ECTTGGGSCSCCCEEECCSSCCSCCC--
T ss_pred CCCCCCeeEEEccCCCCCCCc----ChhHhccccCCCEEECCCCccce----eCHHHhcCCcCCCEEeCCCCccceeC--
Confidence 44455566666664 655532 12344555666666666666653 12234455666666666666664221
Q ss_pred HHHHhccCCCCCCEEEccCCCCCC
Q psy18075 638 SIAKYLTDNTTLEDVNLTCNEISV 661 (999)
Q Consensus 638 ~La~aL~~~~~L~~LdLs~N~I~~ 661 (999)
...+. ...|+.|+|.+|++..
T Consensus 97 --~~~~~-~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 97 --WKTVQ-GLSLQELVLSGNPLHC 117 (347)
T ss_dssp --STTTC-SCCCCEEECCSSCCCC
T ss_pred --HHHcc-cCCceEEEeeCCCccC
Confidence 11111 2226666666666553
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=5e-05 Score=82.47 Aligned_cols=67 Identities=30% Similarity=0.366 Sum_probs=33.2
Q ss_pred hhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCC
Q psy18075 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 660 (999)
Q Consensus 588 ~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~ 660 (999)
..+++|+.|+|++|.|.. +..++..+..+++|+.|+|++|.|++.. .+ ..+... +|++|+|++|++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~--l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l-~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSER--EL-DKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCC--CGGGTTHHHHSTTCCEEECTTSCCCSGG--GG-GGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCC--CccchhHHhhCCCCCEEECCCCccCCch--hh-hhcccC-CcceEEccCCcCc
Confidence 345666666666666652 2223333344555666666666555321 11 112222 5555555555554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.58 E-value=0.00012 Score=79.57 Aligned_cols=106 Identities=19% Similarity=0.229 Sum_probs=67.5
Q ss_pred EEccCCCCCchhHHHHHHHH-hhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCC
Q psy18075 540 FIAGRNRLENEGAKMLAAVF-KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618 (999)
Q Consensus 540 L~Ls~N~L~d~g~~~L~~~L-~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l 618 (999)
++++.|+.. .+..+...+ ..+++|+.|+|++|.|+. +..++..+..+++|+.|+|++|.|.+. ..+ ..+..+
T Consensus 148 l~l~~N~~~--~~~~~l~i~~~~l~~L~~L~Ls~N~l~~--l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l-~~l~~l 220 (267)
T 3rw6_A 148 IDVVLNRRS--CMAATLRIIEENIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSE--REL-DKIKGL 220 (267)
T ss_dssp CCCCTTSHH--HHHHHHHHHHHHCTTCCEEECTTSCCCC--CGGGTTHHHHSTTCCEEECTTSCCCSG--GGG-GGGTTS
T ss_pred ccccCCHHH--HHHHHHHHHHhhCCCCCEEECCCCCCCC--CccchhHHhhCCCCCEEECCCCccCCc--hhh-hhcccC
Confidence 455666432 222222222 457899999999999985 234556667889999999999999853 222 223334
Q ss_pred CCCcEEEcCCCCCCcc---chHHHHHhccCCCCCCEEE
Q psy18075 619 PSLAILNLGDCLLKSA---GASSIAKYLTDNTTLEDVN 653 (999)
Q Consensus 619 ~sL~~LdLs~N~L~d~---g~~~La~aL~~~~~L~~Ld 653 (999)
+|++|+|.+|.+... ...+....+..+++|+.||
T Consensus 221 -~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 221 -KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp -CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred -CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 899999999998641 1122334445556776665
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.44 E-value=0.0061 Score=68.92 Aligned_cols=108 Identities=12% Similarity=0.176 Sum_probs=51.4
Q ss_pred HhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchh
Q psy18075 586 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL 665 (999)
Q Consensus 586 aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~ 665 (999)
+|..|..|+.+.+..+... .-..++..+..|+.+.+.. .++..|. .++..|.+|+.++|..+ ++.-|
T Consensus 260 aF~~c~~L~~i~lp~~~~~-----I~~~aF~~c~~L~~i~l~~-~i~~I~~----~aF~~c~~L~~i~lp~~-v~~I~-- 326 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-----IGTGAFMNCPALQDIEFSS-RITELPE----SVFAGCISLKSIDIPEG-ITQIL-- 326 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-----ECTTTTTTCTTCCEEECCT-TCCEECT----TTTTTCTTCCEEECCTT-CCEEC--
T ss_pred eeeecccccEEecccccce-----ecCcccccccccccccCCC-cccccCc----eeecCCCCcCEEEeCCc-ccEeh--
Confidence 3444555666555443211 0011233445555555542 2322221 34555666777776554 22211
Q ss_pred hHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCC
Q psy18075 666 DLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 666 ~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
..++..|.+|+.+.|..+ +..-| ..++..+.+|+.+.+.++
T Consensus 327 --~~aF~~C~~L~~i~ip~s-v~~I~----~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 327 --DDAFAGCEQLERIAIPSS-VTKIP----ESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp --TTTTTTCTTCCEEEECTT-CCBCC----GGGGTTCTTCCEEEESSC
T ss_pred --HhHhhCCCCCCEEEECcc-cCEEh----HhHhhCCCCCCEEEECCc
Confidence 124556667777776543 22211 135566677777766554
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.37 E-value=0.0047 Score=69.93 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=22.8
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 507 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n 507 (999)
.+..++...+..|.+|+.+.|.++.. ..+-..+ ..|.+|+.+.+..+
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F------~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSME-TLHNGLF------SGCGKLKSIKLPRN 195 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTCC-EECTTTT------TTCTTCCBCCCCTT
T ss_pred cccccchhhhcccCCCcEEecCCccc-eeccccc------cCCCCceEEEcCCC
Confidence 33334444455566777777755432 2222222 23456666666543
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.07 E-value=0.088 Score=59.35 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=31.0
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCC
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 601 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N 601 (999)
.+.+|+.+.+..+... -+ ..+|..+.+|+.+.+..+ ++..+ ..++..+..|+.+.+..+
T Consensus 160 ~c~~L~~i~l~~~~~~-I~----~~~F~~c~~L~~i~l~~~-~~~I~----~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 160 TCESLEYVSLPDSMET-LH----NGLFSGCGKLKSIKLPRN-LKIIR----DYCFAECILLENMEFPNS 218 (394)
T ss_dssp TCTTCCEEECCTTCCE-EC----TTTTTTCTTCCBCCCCTT-CCEEC----TTTTTTCTTCCBCCCCTT
T ss_pred ccCCCcEEecCCccce-ec----cccccCCCCceEEEcCCC-ceEeC----chhhccccccceeecCCC
Confidence 3456777777654321 11 123555677777777665 33221 124445666666665543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.89 E-value=0.28 Score=55.18 Aligned_cols=128 Identities=18% Similarity=0.239 Sum_probs=81.6
Q ss_pred HHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc-ccccCCCCCcEEEcCCCCCCccch
Q psy18075 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG-QALSKLPSLAILNLGDCLLKSAGA 636 (999)
Q Consensus 558 ~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~-~aL~~l~sL~~LdLs~N~L~d~g~ 636 (999)
+|..+..|+.+.+..+..+ .| ..++..++.|+.+.+..+ +. .+. .++..|.+|+.+.|..+ ++..|.
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~----~~aF~~c~~L~~i~l~~~-i~-----~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 327 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IG----TGAFMNCPALQDIEFSSR-IT-----ELPESVFAGCISLKSIDIPEG-ITQILD 327 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-EC----TTTTTTCTTCCEEECCTT-CC-----EECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred eeeecccccEEecccccce-ec----CcccccccccccccCCCc-cc-----ccCceeecCCCCcCEEEeCCc-ccEehH
Confidence 4666788888888765432 21 235667899999998643 32 232 35667889999999864 544442
Q ss_pred HHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCC
Q psy18075 637 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 637 ~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
.++..|.+|+.+.|..+ ++.-|. .++.+|.+|+.+++.++.. ...++..+..|+.+.+..+
T Consensus 328 ----~aF~~C~~L~~i~ip~s-v~~I~~----~aF~~C~~L~~i~~~~~~~-------~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 328 ----DAFAGCEQLERIAIPSS-VTKIPE----SAFSNCTALNNIEYSGSRS-------QWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp ----TTTTTCTTCCEEEECTT-CCBCCG----GGGTTCTTCCEEEESSCHH-------HHHTCBCCCCC--------
T ss_pred ----hHhhCCCCCCEEEECcc-cCEEhH----hHhhCCCCCCEEEECCcee-------ehhhhhccCCCCEEEeCCC
Confidence 56778899999999765 443332 3577899999999988653 1245667788888876554
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=84.24 E-value=0.91 Score=50.40 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=50.7
Q ss_pred HhhhcccCceeeccCCCCCcCCccccc-ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcch
Q psy18075 586 AFEENKNLRHLNLNDNTITYKGAIPLG-QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGG 664 (999)
Q Consensus 586 aL~~~~~Lr~LdLS~N~Lsd~G~~~L~-~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~ 664 (999)
++..+..|+.+.+..+ +. .+. .++..+.+|+.+.+..+ +...+. .++..|.+|+.+.+.++.+..-|.
T Consensus 235 ~f~~~~~L~~i~lp~~-v~-----~I~~~aF~~~~~l~~i~l~~~-i~~i~~----~aF~~c~~L~~i~l~~~~i~~I~~ 303 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VT-----SIGSFLLQNCTALKTLNFYAK-VKTVPY----LLCSGCSNLTKVVMDNSAIETLEP 303 (379)
T ss_dssp TTTTCSSCCEEEECTT-CC-----EECTTTTTTCTTCCEEEECCC-CSEECT----TTTTTCTTCCEEEECCTTCCEECT
T ss_pred cccCCccceEEEcCCC-cc-----EeCccccceeehhcccccccc-ceeccc----cccccccccccccccccccceehh
Confidence 3444566666666543 22 121 13344556666666443 322221 234555666666666554443221
Q ss_pred hhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCC
Q psy18075 665 LDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 712 (999)
Q Consensus 665 ~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~ 712 (999)
.++.+|.+|+.+.|..+ +..-| ..++..+.+|+.+.+..
T Consensus 304 ----~aF~~c~~L~~i~lp~~-l~~I~----~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 304 ----RVFMDCVKLSSVTLPTA-LKTIQ----VYAFKNCKALSTISYPK 342 (379)
T ss_dssp ----TTTTTCTTCCEEECCTT-CCEEC----TTTTTTCTTCCCCCCCT
T ss_pred ----hhhcCCCCCCEEEcCcc-ccEEH----HHHhhCCCCCCEEEECC
Confidence 23455666666666433 22211 12455556666665543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=77.83 E-value=0.83 Score=50.72 Aligned_cols=143 Identities=15% Similarity=0.165 Sum_probs=86.4
Q ss_pred HHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCC
Q psy18075 455 LRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSP 534 (999)
Q Consensus 455 l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~ 534 (999)
...+.......+..|+.+.+..+ +...+...+ ..|..|+.+.+..+ ++..+.. ++. ..
T Consensus 205 ~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f------~~~~~L~~i~lp~~-v~~I~~~----aF~----------~~ 262 (379)
T 4h09_A 205 VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAF------YGMKALDEIAIPKN-VTSIGSF----LLQ----------NC 262 (379)
T ss_dssp CCEECTTTTTTCSSCSEEECCTT-CCEECTTTT------TTCSSCCEEEECTT-CCEECTT----TTT----------TC
T ss_pred eeEEeecccccccccceeeeccc-eeEEccccc------cCCccceEEEcCCC-ccEeCcc----ccc----------ee
Confidence 33333444445677888888654 333333223 34678888888664 3322211 111 23
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc-c
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG-Q 613 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~-~ 613 (999)
.+|+.+.+..+ +...+. .+|..|.+|+.+.+.++.++..|- .+|..|.+|+.+.|..+ +. .+. .
T Consensus 263 ~~l~~i~l~~~-i~~i~~----~aF~~c~~L~~i~l~~~~i~~I~~----~aF~~c~~L~~i~lp~~-l~-----~I~~~ 327 (379)
T 4h09_A 263 TALKTLNFYAK-VKTVPY----LLCSGCSNLTKVVMDNSAIETLEP----RVFMDCVKLSSVTLPTA-LK-----TIQVY 327 (379)
T ss_dssp TTCCEEEECCC-CSEECT----TTTTTCTTCCEEEECCTTCCEECT----TTTTTCTTCCEEECCTT-CC-----EECTT
T ss_pred ehhcccccccc-ceeccc----cccccccccccccccccccceehh----hhhcCCCCCCEEEcCcc-cc-----EEHHH
Confidence 45888888643 332221 246668899999998887775442 36677899999999754 33 333 3
Q ss_pred cccCCCCCcEEEcCCCCCCccc
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAG 635 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g 635 (999)
++..|.+|+.+.+..+ ++.-|
T Consensus 328 aF~~C~~L~~i~ip~~-v~~I~ 348 (379)
T 4h09_A 328 AFKNCKALSTISYPKS-ITLIE 348 (379)
T ss_dssp TTTTCTTCCCCCCCTT-CCEEC
T ss_pred HhhCCCCCCEEEECCc-cCEEc
Confidence 5677889999988765 54444
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=77.21 E-value=3.2 Score=39.42 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=5.9
Q ss_pred CCCcCEEEccCCCC
Q psy18075 674 KTKLKQINVSENQF 687 (999)
Q Consensus 674 ~~sL~~LdLs~N~I 687 (999)
+++|+.|+|.+|++
T Consensus 54 l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 54 LPALRTAHLGANPW 67 (130)
T ss_dssp CTTCCEEECCSSCC
T ss_pred ccccCEEEecCCCe
Confidence 33444444444443
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=71.21 E-value=2 Score=40.78 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=41.4
Q ss_pred ceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCc
Q psy18075 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 662 (999)
Q Consensus 594 r~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~ 662 (999)
..++.+++.++-. .++..+ ..+|+.|+|++|.|+.... ..|...++|+.|+|++|.+.-+
T Consensus 11 ~~v~Cs~~~L~~~---~vP~~l--p~~l~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 11 TLVDCGRRGLTWA---SLPTAF--PVDTTELVLTGNNLTALPP----GLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TEEECCSSCCCTT---TSCSCC--CTTCSEEECTTSCCSSCCT----TTGGGCTTCCEEECCSSCCBCS
T ss_pred CEEEeCCCCCccc---cCCCCC--CcCCCEEECCCCcCCccCh----hhhhhccccCEEEecCCCeecc
Confidence 3667777766511 244332 3479999999999975442 3455678999999999987643
No 167
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=23.33 E-value=17 Score=44.31 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=0.0
Q ss_pred cCCCCCEEeCCCCCCCCCC
Q psy18075 701 SFGMAAALVLEDDEGECSD 719 (999)
Q Consensus 701 ~l~~L~~L~Ls~N~~e~ed 719 (999)
.-++..-|++++...++++
T Consensus 670 r~ks~~lldi~~~s~e~d~ 688 (956)
T 4aco_A 670 RPKQIRLLSIADSSDESST 688 (956)
T ss_dssp -------------------
T ss_pred cccCCCccccccccccccc
Confidence 3445556666554443333
Done!