RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18075
(999 letters)
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 284 bits (729), Expect = 3e-87
Identities = 128/366 (34%), Positives = 191/366 (52%), Gaps = 12/366 (3%)
Query: 376 TKLSFAGQGLKLDN--KEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEH 433
+ S G+ LKLD ED K + + E + + L GNT+G AA+ +++ ++ +
Sbjct: 2 ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61
Query: 434 FKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRS 493
+ A + D+FTGR+K EIP+ALR L L + +L + LSDNAFGP E L D L
Sbjct: 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTAQEPLIDFLSK 120
Query: 494 SCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAK 553
LE L L+NNGLG +++AL + + K + +P L+ I GRNRLEN K
Sbjct: 121 HTP--LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMK 177
Query: 554 MLAAVFKKLKTLERVEMPQNGIYHVGIT-ALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612
A F+ + L V+M QNGI GI L + + L+ L+L DNT T+ G+ L
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237
Query: 613 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDLVKA 670
AL P+L L L DCLL + GA+++ + N L+ + L NEI + L
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297
Query: 671 MKNK-TKLKQINVSENQFGEEG--VEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESE 727
+ K L + ++ N+F EE V+E+ ++ + G L+D E +EE+DEE E
Sbjct: 298 IDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEE 357
Query: 728 EENDSD 733
E+ S
Sbjct: 358 AESQSP 363
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 159 bits (404), Expect = 7e-43
Identities = 55/378 (14%), Positives = 115/378 (30%), Gaps = 29/378 (7%)
Query: 385 LKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFT 444
KL + + + + + SL+L N L + + A + +L
Sbjct: 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS--- 59
Query: 445 GRMKTEI-PDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELK 503
+ L L A + L+LS N + L L + + L
Sbjct: 60 ---GNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF-TITVLD 115
Query: 504 LNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL- 562
L N +A + P ++ N L + + L + +
Sbjct: 116 LGWNDFSSKSSSEFKQAFSNL---------PASITSLNLRGNDLGIKSSDELIQILAAIP 166
Query: 563 KTLERVEMPQNGIYHVGITALSDAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLP-S 620
+ + + N + L+ ++ L+L+ N + K L S +P
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226
Query: 621 LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN---EISVQGGLDLVKAMKNKTKL 677
+ LNL L ++ L+ V L + +S + L A N K+
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286
Query: 678 KQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD-EESEEENDSDAEG 736
++ + + + L++ + +C Q + + E+ + E
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSG--KADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344
Query: 737 DNSNLSHN---DSNHSHN 751
S + + +H H+
Sbjct: 345 RESIQTCKPLLEHHHHHH 362
Score = 102 bits (256), Expect = 2e-23
Identities = 33/203 (16%), Positives = 74/203 (36%), Gaps = 15/203 (7%)
Query: 504 LNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK 563
+N G + + P + N L + L F
Sbjct: 1 MNYKLTLHPGSNPVEEFTS----------IPHGVTSLDLSLNNLYSISTVELIQAFANTP 50
Query: 564 -TLERVEMPQNGIYHVGITALSDAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLP-S 620
++ + + N + L N+ LNL+ N ++YK + L + L+ +P +
Sbjct: 51 ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFT 110
Query: 621 LAILNLGDCLLKSAGASSIAKYL-TDNTTLEDVNLTCNEISVQGGLDLVKAMKN-KTKLK 678
+ +L+LG S +S + ++ +NL N++ ++ +L++ + +
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170
Query: 679 QINVSENQFGEEGVEEMEKLMKS 701
+N+ N + E+ K + S
Sbjct: 171 SLNLRGNNLASKNCAELAKFLAS 193
Score = 32.4 bits (74), Expect = 0.69
Identities = 7/64 (10%), Positives = 24/64 (37%)
Query: 376 TKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFK 435
+ +K +KE K + A ++ ++ ++ G + + + I++ + +
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315
Query: 436 RALW 439
Sbjct: 316 DVPS 319
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 158 bits (403), Expect = 8e-42
Identities = 67/315 (21%), Positives = 119/315 (37%), Gaps = 22/315 (6%)
Query: 391 EDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTE 450
+ + + L + N + + + L AL +
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE------SCG 210
Query: 451 I-PDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL 509
+ D R L + A L EL L N G +G+ L L L L + G+
Sbjct: 211 VTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLLHPSS-RLRTLWIWECGI 268
Query: 510 GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK-LKTLERV 568
GC L + L +LK N L +EGA++L + LE +
Sbjct: 269 TAKGCGDLCRVLRAKE----------SLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318
Query: 569 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK-LPSLAILNLG 627
+ + S +N+ L L +++N + G L Q L + L +L L
Sbjct: 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378
Query: 628 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQ 686
DC + + SS+A L N +L +++L+ N + G L LV++++ L+Q+ + +
Sbjct: 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438
Query: 687 FGEEGVEEMEKLMKS 701
+ EE + ++ L K
Sbjct: 439 WSEEMEDRLQALEKD 453
Score = 148 bits (377), Expect = 2e-38
Identities = 60/299 (20%), Positives = 111/299 (37%), Gaps = 21/299 (7%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKR-ALWKDMFTGRMKTEIPDALRYLGNGLQQ 464
+ L+L+ L ++ L + L ++ L+ L GL
Sbjct: 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG-------DAGLQLLCEGLLD 139
Query: 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDC 524
RL +L L + E LA +LR+ +EL ++NN + G ++L + L D
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPD--FKELTVSNNDINEAGVRVLCQGLKD- 196
Query: 525 YESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 584
SP L+ + ++ + L + +L + + N + VG+ L
Sbjct: 197 --------SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC 248
Query: 585 DAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643
+ LR L + + IT KG L + L SL L+L L GA + + L
Sbjct: 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 308
Query: 644 TD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 701
+ LE + + + + L ++ +S N+ + GV E+ + +
Sbjct: 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367
Score = 148 bits (375), Expect = 4e-38
Identities = 56/290 (19%), Positives = 101/290 (34%), Gaps = 21/290 (7%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKR-ALWKDMFTGRMKTEIPDALRYLGNGLQQ 464
L L LE +L + + +A L FK + + +R L GL+
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN-------EAGVRVLCQGLKD 196
Query: 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDC 524
+ +L L L L ++ S L EL L +N LG G L L
Sbjct: 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKAS--LRELALGSNKLGDVGMAELCPGLLHP 254
Query: 525 YESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 584
L+ + +G L V + ++L+ + + N + G L
Sbjct: 255 SSR---------LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305
Query: 585 DAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643
+ E L L + + T L++ L L + + L+ AG + + L
Sbjct: 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365
Query: 644 TD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 692
+ L + L ++S L + L+++++S N G+ G+
Sbjct: 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415
Score = 143 bits (362), Expect = 2e-36
Identities = 62/308 (20%), Positives = 117/308 (37%), Gaps = 21/308 (6%)
Query: 388 DNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKR-ALWKDMFTGR 446
+ + + ++ + L+ L K I+ AL + L +
Sbjct: 12 CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG-- 69
Query: 447 MKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNN 506
+ + GLQ ++ +L L + G L+ LR+ L+EL L++
Sbjct: 70 -----DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT--LQELHLSD 122
Query: 507 NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 566
N LG G +LL + L D L+ L + LA+V + +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQ---------CRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173
Query: 567 RVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625
+ + N I G+ L +++ L L L +T L ++ SL L
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233
Query: 626 LGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 684
LG L G + + L ++ L + + I+ +G DL + ++ K LK+++++
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293
Query: 685 NQFGEEGV 692
N+ G+EG
Sbjct: 294 NELGDEGA 301
Score = 128 bits (324), Expect = 1e-31
Identities = 57/280 (20%), Positives = 100/280 (35%), Gaps = 23/280 (8%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKR-ALWKDMFTGRMKTEIPDA-LRYLGNGLQ 463
L +L LE + + + + ++ + AL ++ D + L GL
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGS--------NKLGDVGMAELCPGLL 252
Query: 464 QAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHD 523
+RL L + + G L +LR+ L+EL L N LG G +LL + L +
Sbjct: 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKES--LKELSLAGNELGDEGARLLCETLLE 310
Query: 524 CYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL 583
L+ ++V + + L +++ N + G+ L
Sbjct: 311 PG---------CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361
Query: 584 SDAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 642
+ LR L L D ++ L L SL L+L + L AG + +
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421
Query: 643 LTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 681
+ LE + L S + L K+K L+ I+
Sbjct: 422 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461
Score = 127 bits (321), Expect = 4e-31
Identities = 49/244 (20%), Positives = 91/244 (37%), Gaps = 17/244 (6%)
Query: 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGIT 512
L LQQ + L D + ++ LR + L EL L +N LG
Sbjct: 18 ARWAELLPLLQQ----CQVVRLDDCGLTEARCKDISSALRVNPA--LAELNLRSNELGDV 71
Query: 513 GCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 572
G + + L ++ L G +L++ + L TL+ + +
Sbjct: 72 GVHCVLQGLQTP---------SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 573 NGIYHVGITALSDAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 631
N + G+ L + + L L L +++ PL L P L + + +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 632 KSAGASSIAKYLTDNT-TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690
AG + + L D+ LE + L ++ DL + +K L+++ + N+ G+
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242
Query: 691 GVEE 694
G+ E
Sbjct: 243 GMAE 246
Score = 123 bits (310), Expect = 8e-30
Identities = 43/228 (18%), Positives = 83/228 (36%), Gaps = 18/228 (7%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
+ LD+ L LL+ + ++L++ GL CK +S AL
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQ-----CQVVRLDDCGLTEARCKDISSALRVN---- 55
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK-TLERVEMPQNGIYHVGITALSDAF 587
AL N L + G + + ++++ + + G LS
Sbjct: 56 ------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 109
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQAL-SKLPSLAILNLGDCLLKSAGASSIAKYLTDN 646
L+ L+L+DN + G L + L L L L C L +A +A L
Sbjct: 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 169
Query: 647 TTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVE 693
+++ ++ N+I+ G L + +K + +L+ + + +
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217
Score = 93.1 bits (232), Expect = 7e-20
Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 5/159 (3%)
Query: 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 604
L + L + ++ + + + G+ +S A N L LNL N +
Sbjct: 13 EELSDARWAELLPLLQQCQVVR---LDDCGLTEARCKDISSALRVNPALAELNLRSNELG 69
Query: 605 YKGAIPLGQALSKL-PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 663
G + Q L + L+L +C L AG ++ L TL++++L+ N + G
Sbjct: 70 DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 129
Query: 664 GLDLVKAMK-NKTKLKQINVSENQFGEEGVEEMEKLMKS 701
L + + + +L+++ + E + ++++
Sbjct: 130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168
Score = 79.6 bits (197), Expect = 1e-15
Identities = 23/140 (16%), Positives = 59/140 (42%), Gaps = 4/140 (2%)
Query: 563 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 622
++ +++ + L + + + L+D +T + AL P+LA
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPL---LQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59
Query: 623 ILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 681
LNL L G + + L + ++ ++L ++ G L ++ L++++
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119
Query: 682 VSENQFGEEGVEEMEKLMKS 701
+S+N G+ G++ + + +
Sbjct: 120 LSDNLLGDAGLQLLCEGLLD 139
Score = 69.6 bits (171), Expect = 2e-12
Identities = 19/113 (16%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 590 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 649
+ +++ L++ ++ L L + + L DC L A I+ L N L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQV---VRLDDCGLTEARCKDISSALRVNPAL 58
Query: 650 EDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVEEMEKLMKS 701
++NL NE+ G +++ ++ K++++++ G + +++
Sbjct: 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 135 bits (343), Expect = 9e-35
Identities = 47/237 (19%), Positives = 91/237 (38%), Gaps = 18/237 (7%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
L +L+L+ P+ +A +L S AL+E+ L + L G + L +
Sbjct: 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRH-ALDEVNLASCQLDPAGLRTLLPVFLRARK-- 130
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK-TLERVEMPQNGIYHVGITALSDAF 587
L L N L E K L + + + + + N + G+ L +
Sbjct: 131 ------LGL-----QLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
N ++ HL+L + +G L L + L LN+ A ++A+ ++
Sbjct: 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP 239
Query: 648 TLEDVNLTCNEISVQGGL---DLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 701
+LE ++L NE+S +G DL A + ++ E + ++ ++
Sbjct: 240 SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRN 296
Score = 134 bits (338), Expect = 5e-34
Identities = 52/302 (17%), Positives = 100/302 (33%), Gaps = 36/302 (11%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKRALW-KDMFTGRMKTEIPDALRYLGNGLQQ 464
L LNL G + +A L H + P LR L
Sbjct: 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD------PAGLRTLLPVFL- 126
Query: 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDC 524
R +L L N+ GP + L DLL C + L+L+NN L G +L + L
Sbjct: 127 ---RARKLGLQLNSLGPEACKDLRDLLLHDQC-QITTLRLSNNPLTAAGVAVLMEGLAGN 182
Query: 525 YESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 584
++ L +EG ++LAA + + L+ + + NG AL+
Sbjct: 183 T----------SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS---LAILNLGDCLLKSAGASSIAK 641
A E+ +L L+L N ++ +G L + + + + +++
Sbjct: 233 RAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSE 292
Query: 642 YLTDNTTLEDVN-----------LTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690
+ + + L + + + ++ + +++ + G
Sbjct: 293 VQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSP 352
Query: 691 GV 692
Sbjct: 353 SG 354
Score = 122 bits (307), Expect = 5e-30
Identities = 41/205 (20%), Positives = 80/205 (39%), Gaps = 13/205 (6%)
Query: 498 ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAA 557
+L +L L + C +++ L + L +L+ G + L
Sbjct: 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHA---------LDEVNLASCQLDPAGLRTLLP 123
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTITYKGAIPLGQALS 616
VF + + L + N + L D ++ + L L++N +T G L + L+
Sbjct: 124 VFLRARKLG---LQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180
Query: 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTK 676
S+ L+L L G +A L N L+++N+ N L L +A +
Sbjct: 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS 240
Query: 677 LKQINVSENQFGEEGVEEMEKLMKS 701
L+ +++ N+ EG + + L +
Sbjct: 241 LELLHLYFNELSSEGRQVLRDLGGA 265
Score = 106 bits (266), Expect = 1e-24
Identities = 50/275 (18%), Positives = 77/275 (28%), Gaps = 60/275 (21%)
Query: 403 VKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYL---G 459
L L+ N+LG A K + D L H+ + + L
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLL-LHDQCQ-------------------ITTLRLSN 164
Query: 460 NGLQQAGAR-----------LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
N L AG + L L G G+E LA L + L+EL + NG
Sbjct: 165 NPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ--LQELNVAYNG 222
Query: 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 568
G T L++A + +L++ N L +EG ++L + + RV
Sbjct: 223 AGDTAALALARAAREHP----------SLELLHLYFNELSSEGRQVLRDLGGAAEGGARV 272
Query: 569 E---MPQNGIYHVGITALSDAFEENK-----------NLRHLNLNDNTITYKGAIPLGQA 614
+ LS+ L +L D+ Q
Sbjct: 273 VVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQL 332
Query: 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 649
L + L S S
Sbjct: 333 LRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGH 367
Score = 88.2 bits (219), Expect = 1e-18
Identities = 27/207 (13%), Positives = 59/207 (28%), Gaps = 11/207 (5%)
Query: 393 AKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKR-ALWKDMFTGRMKTEI 451
V+++ + + L+L LG + +A L ++ + + +
Sbjct: 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG------- 224
Query: 452 PDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFA-LEELKLNNNGLG 510
A L ++ L L L N G + L DL ++ A + +
Sbjct: 225 DTAALALARAAREH-PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283
Query: 511 ITGCKLLSKALHDCYESSKKEG-SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 569
+LS+ + + L L + +R A + + + +
Sbjct: 284 EYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALL 343
Query: 570 MPQNGIYHVGITALSDAFEENKNLRHL 596
+ FE+ H
Sbjct: 344 EQLGSSGSPSGSWSHPQFEKGAGHHHH 370
Score = 76.3 bits (188), Expect = 9e-15
Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 5/136 (3%)
Query: 560 KKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTITYKGAIPLGQALSKL 618
+ L +L ++ + + V T ++ + L +NL + G L +
Sbjct: 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 677
L L L + L + + + L+ N ++ G L++ + T +
Sbjct: 129 RK---LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185
Query: 678 KQINVSENQFGEEGVE 693
+++ G+EG+E
Sbjct: 186 THLSLLHTGLGDEGLE 201
Score = 69.4 bits (170), Expect = 2e-12
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 5/119 (4%)
Query: 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL-PSLAILNLGDCLLKSAG 635
H + E +LR LNL +T + L +L +NL C L AG
Sbjct: 58 HYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG 117
Query: 636 ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVE 693
++ L L N + + DL + ++ ++ + +S N GV
Sbjct: 118 LRTLLPVFLRARKL---GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA 173
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 92.4 bits (230), Expect = 1e-21
Identities = 23/148 (15%), Positives = 54/148 (36%), Gaps = 3/148 (2%)
Query: 548 ENEGAKMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYK 606
+ + L + LE V + I + A ++A + N ++ ++
Sbjct: 21 STDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP 80
Query: 607 GAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT--CNEISVQGG 664
A L + L +L LN+ + +G ++ + L NT+L ++ + +
Sbjct: 81 VAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140
Query: 665 LDLVKAMKNKTKLKQINVSENQFGEEGV 692
+++ ++ T L + Q G
Sbjct: 141 MEIANMLEKNTTLLKFGYHFTQQGPRLR 168
Score = 90.4 bits (225), Expect = 5e-21
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 3/143 (2%)
Query: 539 VFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNL 598
V + + K A K +++ + AL++ + N L+ LN+
Sbjct: 41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV 100
Query: 599 NDNTITYKGAIPLGQALSKLPSLAILNLGDC--LLKSAGASSIAKYLTDNTTLEDVNLTC 656
N I+ G + L +AL SL L + + L + IA L NTTL
Sbjct: 101 ESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160
Query: 657 NEISVQGGLDLVKAMKNKTKLKQ 679
+ + M N +++
Sbjct: 161 TQQGPRLRASNA-MMNNNDLVRK 182
Score = 85.4 bits (212), Expect = 3e-19
Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 19/193 (9%)
Query: 460 NGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLS 518
N + + D N+ E L + + LEE+ LNN + + K +
Sbjct: 3 NSVIKPTKYKPVPDEEPNS--TDVEETLKRIQNNDP--DLEEVNLNNIMNIPVPTLKACA 58
Query: 519 KALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 578
+AL +++ +K F R + A LA + K TL+ + + N I
Sbjct: 59 EAL----KTNTY------VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108
Query: 579 GITALSDAFEENKNLRHLNL--NDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 636
GI AL +A + N +L L + + + + L K +L
Sbjct: 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ--GPR 166
Query: 637 SSIAKYLTDNTTL 649
+ + +N L
Sbjct: 167 LRASNAMMNNNDL 179
Score = 61.2 bits (149), Expect = 9e-11
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 611 LGQALSKLPSLAILNLGD-CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 669
L + + P L +NL + + + A+ L NT ++ ++ + L +
Sbjct: 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE 87
Query: 670 AMKNKTKLKQINVSENQFGEEGVEEM 695
+K LK +NV N G+ +
Sbjct: 88 MLKVNNTLKSLNVESNFISGSGILAL 113
Score = 53.8 bits (130), Expect = 3e-08
Identities = 39/284 (13%), Positives = 71/284 (25%), Gaps = 107/284 (37%)
Query: 318 GWIKVINSMVSVIPIDNPLGPAVIELNHKGRMTDKPNDDVSDILKKLESISVESGQDSTK 377
G VI D DV + LK++++ +
Sbjct: 1 GLNSVIKPTKYKPVPDEEPNS----------------TDVEETLKRIQN-------NDPD 37
Query: 378 LSFAGQGLKLDN-----KEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHE 432
L + + L+N K +A+ + ++ G A A+A+ L +
Sbjct: 38 L----EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN- 92
Query: 433 HFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLR 492
L L++ N G+ L + L+
Sbjct: 93 ----------------------------------NTLKSLNVESNFISGSGILALVEALQ 118
Query: 493 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGA 552
S+ L EL+++N L N
Sbjct: 119 SNTS--LIELRIDNQ------------------------------------SQPLGNNVE 140
Query: 553 KMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHL 596
+A + +K TL + S+A N +L
Sbjct: 141 MEIANMLEKNTTLLKFGYHFTQQG--PRLRASNAMMNNNDLVRK 182
Score = 30.0 bits (68), Expect = 2.9
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 376 TKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFK 435
+L Q L N I + + + L+ G ++A+ +
Sbjct: 124 IELRIDNQSQPLGN-NVEMEIANMLEKNTTLLKFGYHFTQQG--PRLRASNAMMNNNDLV 180
Query: 436 RAL 438
R
Sbjct: 181 RKR 183
>2grr_B RAN GTPase-activating protein 1; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} SCOP: a.118.12.1 PDB: 2grn_B 2grp_B 2grq_B
2gro_B 1z5s_C 3uip_C* 3uio_C 3uin_C* 2io2_C 2io3_C
2iy0_C 1kps_B
Length = 170
Score = 85.5 bits (211), Expect = 2e-19
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 10/154 (6%)
Query: 765 NTSNQSHSVSQLKQHSVTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAI 824
+T + +S V+ FLA PS LGP + L + ++ ++ + A
Sbjct: 1 STGEPAPVLSSPPPADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVS----AF 56
Query: 825 MKVSSLVPSTTTLQSPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLIKCEDK 884
+KVSS+ + ++ + L ++ FN + S +T LLVH+GL+K EDK
Sbjct: 57 LKVSSVF---KDEATVRMAVQDAVDALMQKAFNSS--SFNSNTFLTRLLVHMGLLKSEDK 111
Query: 885 SFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLA 918
K NL G + A+ + + P LLA
Sbjct: 112 -VKAIANLYGPLMALNHMVQQDYFPKALAPLLLA 144
Score = 62.8 bits (152), Expect = 2e-11
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 174 ESMLLAIMKVSSLVPSTTTLPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLI 233
E ++ A +KVSS+ T+ ++ + L ++ FN +S +T LLVH+GL+
Sbjct: 50 EKVVSAFLKVSSVFKDEATV-RMAVQDAVDALMQKAFNSSS--FNSNTFLTRLLVHMGLL 106
Query: 234 KCEDKSFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLA 272
K EDK K NL G + A+ + + P LLA
Sbjct: 107 KSEDK-VKAIANLYGPLMALNHMVQQDYFPKALAPLLLA 144
Score = 42.4 bits (99), Expect = 2e-04
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 62 NTSNQSHSVSQLKQHSVTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAI 121
+T + +S V+ FLA PS LGP + L + ++ ++ + A
Sbjct: 1 STGEPAPVLSSPPPADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVS----AF 56
Query: 122 MKVSSLVPSTTTLQSLTVLSCS--LMKSTVSLKTENLVFVLT 161
+KVSS+ T++ V LM+ + + N LT
Sbjct: 57 LKVSSVFKDEATVRMA-VQDAVDALMQKAFNSSSFNSNTFLT 97
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 81.4 bits (201), Expect = 1e-17
Identities = 21/145 (14%), Positives = 53/145 (36%), Gaps = 4/145 (2%)
Query: 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 604
R+ E + L K +E+ + I L + E + +LR LN+ N +T
Sbjct: 52 KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111
Query: 605 YKGAIPLGQALSK---LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 661
+ L ++ + N +L + + + +N +L V ++ +
Sbjct: 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171
Query: 662 QGGLDLVKAMKNKTKLKQINVSENQ 686
+ + +N +++ + ++
Sbjct: 172 RHRVSE-ALERNYERVRLRRLGKDP 195
Score = 73.3 bits (180), Expect = 6e-15
Identities = 22/141 (15%), Positives = 56/141 (39%), Gaps = 4/141 (2%)
Query: 552 AKMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP 610
+ + + L+ V + + I +L +A +K++ +L + I+ A
Sbjct: 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG 89
Query: 611 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV---NLTCNEISVQGGLDL 667
L + + PSL +LN+ L + + + ++ + N + + Q +D+
Sbjct: 90 LIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149
Query: 668 VKAMKNKTKLKQINVSENQFG 688
+ A++ L ++ +S
Sbjct: 150 MMAIEENESLLRVGISFASME 170
Score = 73.0 bits (179), Expect = 8e-15
Identities = 16/123 (13%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 582 ALSDAFEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 640
++ E++ +L+ +N+N+ ++ + L +A + +L + + + A +
Sbjct: 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 91
Query: 641 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKT--KLKQINVSENQFGEEGVEEMEK 697
+ + + +L +N+ N ++ + L+++ ++ + K N ++ G + +M
Sbjct: 92 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 151
Query: 698 LMK 700
++
Sbjct: 152 AIE 154
Score = 54.5 bits (131), Expect = 2e-08
Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 611 LGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 669
+ + L +N+ + + S+ + ++ +E +L IS L++
Sbjct: 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92
Query: 670 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 701
++ L+ +NV N E + + +
Sbjct: 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLV 124
Score = 46.8 bits (111), Expect = 9e-06
Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 11/128 (8%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
+ + L++ A GL +L+ +S L L + +N L L ++
Sbjct: 72 IEKFSLANTAISDSEARGLIELIETSPS--LRVLNVESNFLTPELLARLLRST------- 122
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 588
S + K ++ L N+ + ++ ++L RV + + +S+A E
Sbjct: 123 LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME--ARHRVSEALE 180
Query: 589 ENKNLRHL 596
N L
Sbjct: 181 RNYERVRL 188
Score = 43.3 bits (102), Expect = 1e-04
Identities = 24/176 (13%), Positives = 51/176 (28%), Gaps = 47/176 (26%)
Query: 351 DKPND-DVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSL 409
+ ND DV + +L D+ +K +KE + +++A K +
Sbjct: 22 EPDNDTDVESCINRLRE------DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKF 75
Query: 410 NLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARL 469
+L + + A+ + + + L
Sbjct: 76 SLANTAISDSEARGLIELIETSPS-----------------------------------L 100
Query: 470 VELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG---LGITGCKLLSKALH 522
L++ N P + L + ++ E K +N LG + A+
Sbjct: 101 RVLNVESNFLTPELLARLLRSTLVTQ--SIVEFKADNQRQSVLGNQVEMDMMMAIE 154
Score = 36.7 bits (85), Expect = 0.016
Identities = 16/142 (11%), Positives = 52/142 (36%), Gaps = 17/142 (11%)
Query: 341 IELNHKGRMTDKPNDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAI 400
+ +N+ R++ + + + + I K S A + + +A+ +++ I
Sbjct: 46 VNINNMKRVSKERIRSLIEAACNSKHI--------EKFSLANTAI---SDSEARGLIELI 94
Query: 401 NEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDA-LRYLG 459
L LN+E N L + + +++ + + ++ + + +
Sbjct: 95 ETSPSLRVLNVESNFLTPELLARLLRSTLVT----QSIVEFKADNQRQSVLGNQVEMDMM 150
Query: 460 NGLQQAGARLVELDLSDNAFGP 481
+++ L+ + +S +
Sbjct: 151 MAIEE-NESLLRVGISFASMEA 171
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.3 bits (184), Expect = 8e-14
Identities = 92/719 (12%), Positives = 193/719 (26%), Gaps = 225/719 (31%)
Query: 54 HNNSNQSHNTSNQSHSVSQLKQHSVTDF-------------------------LAAPSVS 88
H++ + T + + F + +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 89 -----LFNSL---GPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSLTVL 140
LF +L Q F++E+ Y L++ +K PS T +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVL---RINY--KFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 141 SCSLMKSTVSLKTENLVFVLTKNHCAYHVDRYLESMLLAIMK-VSSLVPST--------- 190
+ N V K Y+V R L + + + L P+
Sbjct: 117 D----------RLYNDNQVFAK----YNVSR--LQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 191 ---TTLPSSSL--FECTKVLYRELFNWAS----NSDK-LSTVTNALLVHLGLIKCE--DK 238
T + ++ + ++F W + NS + + + LL + D
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 239 SFKINYNLNGCMTAVRLLSEAKLLPSLTESQLL--------ACMKLMDEK-KTLVI--KV 287
S I ++ +R L ++K LL + K L+
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYE---NC-LLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 288 PISGFLNGEVETFVPPEVLLKLHTIADQEEGWIKVINSMVSVIPID----NPLGPAVI-E 342
++ FL+ T + + T + + +K ++ +P + NP ++I E
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 343 LNHKGRMTDKPNDDV-SDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVD-AI 400
G T V D L + S+ L+ E K+ ++
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNV---------------LEPAEYRKMFDRLSV 380
Query: 401 NEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGN 460
+ L + +W D+ +K+++ + N
Sbjct: 381 FPPSAHIPT----ILLSL-------------------IWFDV----IKSDVMVVV----N 409
Query: 461 GLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSK- 519
L + LVE ++ + + E L+ ++
Sbjct: 410 KLHKYS--LVEKQPKESTI------SIPSIYLELKVKLENEYALHR--------SIVDHY 453
Query: 520 ALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG 579
+ ++S P L + + + G +H+
Sbjct: 454 NIPKTFDSDDL--IPPYLDQYF-----------------YSHI-----------G-HHLK 482
Query: 580 ITALSDAFEENKNLRHLNLN--DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 637
+ + + L+ + I + + S L +L L
Sbjct: 483 NIEHPERMTLFRMV-FLDFRFLEQKIRHDS-TAWNASGSILNTLQQLKF----------- 529
Query: 638 SIAKYLTDN--------TTLEDVNLTCNEISVQG-GLDLVK-AMKNKTK------LKQI 680
Y+ DN + D E + DL++ A+ + + KQ+
Sbjct: 530 -YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 35.2 bits (80), Expect = 0.13
Identities = 51/336 (15%), Positives = 80/336 (23%), Gaps = 118/336 (35%)
Query: 757 HNNSNQSHNTSNQSHSVSQLKQHSVTDF-------------------------LAAPSVS 791
H++ + T + + F + +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 792 -----LFNSL---GPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSPSSS 843
LF +L Q F++E+ Y L++ +K PS T
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVL---RINY--KFLMSPIKTEQRQPSMMT-----RM 111
Query: 844 LFECTKVLYR--ELFN--WASNSDKLSTVTNALL---------VH--LGLIK-------C 881
E LY ++F S + ALL + LG K C
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 882 EDKS------FKINY-NLNGCMTAVRLLSEAKLL------------------PSLTESQL 916
FKI + NL C + +L + L S
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 917 LACMKLMDEKK-SRAGIQLDTV--IRLCKMFDLSKESSTKGRRTPCQQC-------NMCI 966
+L+ K + L V + F+L C +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL--------------SCKILLTTRFKQV 277
Query: 967 ILGLLAEKLAGPSSVAM---LTQG-TLEYLVANLSC 998
L A S LT L+ L C
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 68.8 bits (167), Expect = 2e-12
Identities = 21/157 (13%), Positives = 57/157 (36%), Gaps = 12/157 (7%)
Query: 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAV 558
L+ L++ + GL + + + + E L +++ + + + +
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEK---------LVLYVGVEDYGFDGDMNVFRPL 245
Query: 559 FK--KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616
F + L+ + + +V + ++ + L ++++ +T +GA L +
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVD 304
Query: 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVN 653
K+ L +N+ L + K L + D
Sbjct: 305 KIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341
Score = 68.1 bits (165), Expect = 4e-12
Identities = 34/236 (14%), Positives = 79/236 (33%), Gaps = 23/236 (9%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
++D + I L+ +L + LNN + T + K
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAM-------PLLNNLKIKGTNNLSIGKKPRPN---- 194
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
LK L + + + + L+ L ++ + + F
Sbjct: 195 --------LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246
Query: 588 EENK--NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 645
+++ NL+ L + D ++ LP L +++ +L GA + ++
Sbjct: 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDK 305
Query: 646 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 701
L+ +N+ N +S + +L K++ K + ++ + + E+E
Sbjct: 306 IKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDYSYPMITELEHHHHH 361
Score = 51.5 bits (122), Expect = 9e-07
Identities = 34/299 (11%), Positives = 88/299 (29%), Gaps = 17/299 (5%)
Query: 410 NLEGNTLGVNAAKAIADALSKHEHFKR-ALWKDMFTGRMKTEIPDALRYLGNGLQQAGAR 468
++ G + VN K D ++ ++F + + + + +
Sbjct: 19 DVRGTDVIVNYGKLGTDGQTQVKNFSSAGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKV 78
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
+ GV + +L+ +L+++ + G C ++ + + E
Sbjct: 79 EAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKF 138
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 588
L + L+ V + L +++ LS +
Sbjct: 139 AHF-EGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT-------NNLSIGKK 190
Query: 589 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL---GDCLLKSAGASSIAKYLTD 645
NL+ L + + + S LP+L L L + + +
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDI--LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248
Query: 646 NT--TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 702
+ L+ + + E +++ L+ +++S +EG + +
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ-LETMDISAGVLTDEGARLLLDHVDKI 306
Score = 49.6 bits (117), Expect = 3e-06
Identities = 35/233 (15%), Positives = 69/233 (29%), Gaps = 25/233 (10%)
Query: 312 IADQEEGWIKVINSMVSVIPIDNPLGPAVIELNHKGRMTDKPNDDVSDILKKLESISVES 371
+ D++ +K I ++ A + +K + DI + + IS
Sbjct: 101 LKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIE 160
Query: 372 GQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKH 431
D + + A L + + L SL + L + + I + +
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPN 220
Query: 432 -EHFKRALWKDMFTGRMKTEIPDA---------LRYLG---NGLQQAGA----------R 468
E + + + + L++LG Q +
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 521
L +D+S G L D + L+ + + N L K L K+L
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIK--HLKFINMKYNYLSDEMKKELQKSL 331
Score = 32.6 bits (73), Expect = 0.65
Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 38/114 (33%)
Query: 385 LKLDNKEDAKVIVDAINEVKV---LVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKD 441
L + + E+ V+V+ E + L ++++ L A+ + D + K +H
Sbjct: 257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH-------- 308
Query: 442 MFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSC 495
L +++ N + L L
Sbjct: 309 ---------------------------LKFINMKYNYLSDEMKKELQKSLPMKI 335
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.5 bits (159), Expect = 9e-11
Identities = 98/587 (16%), Positives = 169/587 (28%), Gaps = 201/587 (34%)
Query: 53 SHNNSNQSHNTSNQSHSV-SQLKQ------HSVTDFLAA---PS--VSLFNS-LGPNCAQ 99
SH + S + SQL++ T+ AA P+ L LG
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG----- 66
Query: 100 LFLDEINSEPEDRYLESMLLAIMK---------------VSSLVPS--TTTLQSLTVL-- 140
++ + + + +L + + L+ TT +++ ++
Sbjct: 67 -YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 141 ---SCSLMKSTVSLKTENLVF--VLTKNHCAYHV-------DRYLE----------SMLL 178
+ + K K+ + +F V N + D Y E ++
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 179 AIMKVSS--LVP-STTTLPSSSLFECTKVLYRELFNWASNSDK------LSTVTNAL--- 226
++K S+ L TTL + +F T+ L + W N L ++ +
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVF--TQGL--NILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 227 ----LVHLGLIKCE------DKSFKINYNLNGCMTAV---RLLSEAKLLPSLTESQLLAC 273
L H ++ + + G + ++E S S A
Sbjct: 242 GVIQLAHY-VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA- 299
Query: 274 MKLMDEKKTLVIKVPISGFLNG-EV-ETFVPPEVLLKLHTIADQEEGWIKVINSMVSV-- 329
+ ++ F G E + P L + D E V + M+S+
Sbjct: 300 ITVL--------------FFIGVRCYEAY--PNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 330 ---------IPIDN---PLGPAV-IEL-NHKGR----MTDKPNDDVSDIL----KKLESI 367
+ N P G V I L N G ++ P L L
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVN--GAKNLVVSGPPQS-----LYGLNLTLRKA 396
Query: 368 SVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLV------SLNLEGNTLGVNAA 421
SG D +++ F+ + LK N+ L S L A+
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNR--------------FLPVASPFHSHLLVP------AS 436
Query: 422 KAI-ADALSKHEHFKRALWK----DMFTGRMKTEIPDALRYLGNGLQQAGARLV------ 470
I D + + F + D F G D LR L + + +
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGS------D-LRVLSGSISERIVDCIIRLPVK 489
Query: 471 -ELDLSDNA-----FGPIGVEGLADLLRSSCCFALEELKLNNNGLGI 511
E A FGP G GL L N +G G+
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHR-----------NKDGTGV 525
Score = 57.0 bits (137), Expect = 3e-08
Identities = 47/259 (18%), Positives = 90/259 (34%), Gaps = 64/259 (24%)
Query: 488 ADL-LRSSCCFALEELKLNN-------NGLGITGCKLLSKALHDCYESSKKEGSPLALKV 539
AD + + F++ ++ +NN G G G ++ +E+ +G K+
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFG-GEKGKRIRENYSAMIFETIV-DGKLKTEKI 1706
Query: 540 FIAGRNRLEN---EGAK------------MLA---AVFKKLKTLERVEMPQNGIY--H-V 578
F + K + A F+ LK + +P + + H +
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK--SKGLIPADATFAGHSL 1764
Query: 579 G-ITAL---SDAFEENKNLRHLNLND--NTITYKG-----AIPLGQALSKLPSLAILNLG 627
G AL +D +++ + Y+G A+P + + +N G
Sbjct: 1765 GEYAALASLADV---------MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 628 DCLLKSAGAS--SIAKYLTDNTT--LEDVNLTC-NEISVQGG----LDLVKAMKNKTKLK 678
+ + + + + T +E VN N+ V G LD V + N KL+
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 679 QINVSE--NQFGEEGVEEM 695
+I++ E E VE
Sbjct: 1876 KIDIIELQKSLSLEEVEGH 1894
Score = 51.2 bits (122), Expect = 2e-06
Identities = 43/273 (15%), Positives = 80/273 (29%), Gaps = 95/273 (34%)
Query: 523 DCYESSKKEGSPLALKVF-IAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG--IY--H 577
D Y++S A V+ A + + G +L V L + G I +
Sbjct: 1634 DLYKTS-----KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 578 VGIT--ALSDAFEENKNL-RHLNLNDNTITYKGAIPLG--------Q-ALSKLPSLAILN 625
+ + D + + + + +N + + T++ G Q AL+ L A
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS--EKGLLSATQFTQPALT-LMEKAAFE 1745
Query: 626 LGDCLLKS----------AGAS--------SIAKYLTDNTTLEDVNLTCNEISVQGGLDL 667
LKS AG S S+A ++ +E + +++
Sbjct: 1746 D----LKSKGLIPADATFAGHSLGEYAALASLADVMS----IESL------------VEV 1785
Query: 668 V----KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD 723
V M + V E ++GM A + G +
Sbjct: 1786 VFYRGMTM-----------------QVAVPRDELGRSNYGMIAI-----NPGRVAASFSQ 1823
Query: 724 EESEEENDSDAEGDNSNLSH-NDSNHSHNASNQ 755
E + + + + N N NQ
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNY-----NVENQ 1851
Score = 49.7 bits (118), Expect = 6e-06
Identities = 50/306 (16%), Positives = 89/306 (29%), Gaps = 111/306 (36%)
Query: 313 AD----QEEGWIKVINSMVSVIPI--DNPLGPAVIELNHKGR--------MTDKPNDDVS 358
AD G+ S++ I +NP+ + KG+ M + D
Sbjct: 1649 ADNHFKDTYGF--------SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 359 DILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNL------E 412
+K+ E + ST +F + L + + A+ L+ +
Sbjct: 1701 LKTEKIFK---EINEHSTSYTFRSEKGLLSATQFTQP---AL----TLMEKAAFEDLKSK 1750
Query: 413 GNT----------LGVNAA-KAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNG 461
G LG AA ++AD +S + + + + Y G
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMS----IESLV--------------EVVFYRGMT 1792
Query: 462 LQQAGARLVELDLSDN---AFGP--IGVEGLADLLRSSCCFALEELKLNNNGLGITGCKL 516
+Q A R EL S+ A P + + L+ + TG L
Sbjct: 1793 MQVAVPR-DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR----------TG-WL 1840
Query: 517 LSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK------------- 563
+ ++ E + AG + + V +K
Sbjct: 1841 VEIVNYNV------ENQ----QYVAAG----DLRALDTVTNVLNFIKLQKIDIIELQKSL 1886
Query: 564 TLERVE 569
+LE VE
Sbjct: 1887 SLEEVE 1892
Score = 46.2 bits (109), Expect = 6e-05
Identities = 98/562 (17%), Positives = 169/562 (30%), Gaps = 174/562 (30%)
Query: 516 LLSKALHDCYESSKKEGSPLA-----LKV--------FIAGRN------RLENEGAKMLA 556
L+ K L Y SS E S + L + ++ G + +L E L
Sbjct: 60 LVGKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 557 AVFKKLKT--------------------LERVEMPQNGIYHV----GITALSDAFEENKN 592
+ +K V + + G T D FEE
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT--DDYFEE--- 172
Query: 593 LRHLNLNDNTITYKGAIP--LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 650
LR L TY + + + L L L + + G + I ++L + +
Sbjct: 173 LRDLYQ-----TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTP 226
Query: 651 DVN-LTCNEISVQG-GLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF-----G 703
D + L IS G+ +L V+ G E+ +K G
Sbjct: 227 DKDYLLSIPISCPLIGV---------IQLAHYVVTAKLLGFT-PGELRSYLKGATGHSQG 276
Query: 704 MAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNL---------SHNDSNHSHNASN 754
+ A+ + E ES + A + + + + +
Sbjct: 277 LVTAVAIA--------ETDSWESFFVSVRKA------ITVLFFIGVRCYE--AYPNTSLP 320
Query: 755 QSHNNSNQSHNTSNQSH--SVSQLKQHSVTDFLAA-----P-----SVSLFNSLGPNCAQ 802
S + +N S S+S L Q V D++ P +SL N G
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--GAKN-- 376
Query: 803 LFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQS--PSSSLFECTKVLYREL----- 855
+ ++ P+ L + L + K PS QS P S K R L
Sbjct: 377 -LV--VSGPPQS--LYGLNLTLRKAK--APSGLD-QSRIPFSE--RKLKFSNRFLPVASP 426
Query: 856 FNWASNSDKLSTVTNALLVHLGL--IKCEDKSFKIN-YN-LNGCMTAVRLLSEAKLLPSL 911
F +S L ++ + L + K +I Y+ +G + +R+LS + +
Sbjct: 427 F----HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG--SDLRVLS-GSISERI 479
Query: 912 TESQLLACMKLMD-EKKSRAGIQ--LDTVIRLCKMFDLSKESSTKGRRTPCQQCNMCIIL 968
+ + E ++ LD F S L
Sbjct: 480 VD---CIIRLPVKWETTTQFKATHILD--------FGPGGASG----------------L 512
Query: 969 GLLAEKLAGPSSVAMLTQGTLE 990
G+L + + V ++ GTL+
Sbjct: 513 GVLTHRNKDGTGVRVIVAGTLD 534
Score = 40.0 bits (93), Expect = 0.005
Identities = 66/348 (18%), Positives = 109/348 (31%), Gaps = 139/348 (39%)
Query: 205 LY------RELFNWASNSDK----------LSTVTN---ALLVHLGLIKCEDKSFKINYN 245
LY ++++N A D L V N L +H G K K + NY+
Sbjct: 1635 LYKTSKAAQDVWNRA---DNHFKDTYGFSILDIVINNPVNLTIHFGGEK--GKRIRENYS 1689
Query: 246 LNGCMTAVRLLSEAKLLPSLTESQLLACMKLMDEKKTLVIKVPISGFLNGEVETFVPPEV 305
++ E + L ++ K ++E T TF +
Sbjct: 1690 --------AMIFETIVDGKLKTEKIF---KEINEHSTSY--------------TFRSEKG 1724
Query: 306 LLKL--HT-IADQEEGWIKVINSMVSVIPIDNPLGPAVIE-LNHKGRMTDKPNDDV---- 357
LL T A + + + A E L KG P D
Sbjct: 1725 LLSATQFTQPA------LTL----MEK---------AAFEDLKSKG---LIPADATFAGH 1762
Query: 358 SDILKKL----------ESISVESGQDSTKLSFA-GQGLKLDNKED----AKVIVDAINE 402
S L + +S+E ++ F G +++ D + + AIN
Sbjct: 1763 S-----LGEYAALASLADVMSIE---SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 403 VKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGN-- 460
+V S + E A + + + + K TG + EI N
Sbjct: 1815 GRVAASFSQE-------ALQYVVERVGKR------------TGWLV-EI--V-----NYN 1847
Query: 461 --GLQQ---AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELK 503
QQ AG L LD N I ++ + D++ +LEE++
Sbjct: 1848 VEN-QQYVAAG-DLRALDTVTNVLNFIKLQKI-DIIELQKSLSLEEVE 1892
Score = 38.9 bits (90), Expect = 0.010
Identities = 35/188 (18%), Positives = 53/188 (28%), Gaps = 63/188 (33%)
Query: 741 LSHNDSNHSHNASNQSHNNSNQSHNTSNQSHSVSQLKQHSVTDF---LAAPSVSLFNSLG 797
LSH H S SQL++ F L P+
Sbjct: 11 LSHGSLEHVLLVPTASFFI-------------ASQLQE----QFNKILPEPTEGF----- 48
Query: 798 PNCAQLFLDEINSEPEDRYLESMLLA--IMKVSSLVPSTTTLQSPSSSLFECTKVLYREL 855
A DE + E L+ + VSSLV S + + E
Sbjct: 49 ---AA--DDEPTTPAE-------LVGKFLGYVSSLVE-----PSKVGQFDQVLNLCLTE- 90
Query: 856 F--NWASNSDKLSTVTNALLVHLGLI--KCEDKSFKI--NYNLNGCMTAVRLLSEAKLLP 909
F + +D +AL L K+ ++ NY + + A R +
Sbjct: 91 FENCYLEGND-----IHALAAKLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKK---- 140
Query: 910 SLTESQLL 917
+ S L
Sbjct: 141 --SNSALF 146
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 60.7 bits (147), Expect = 2e-09
Identities = 28/246 (11%), Positives = 72/246 (29%), Gaps = 38/246 (15%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
EIP+ Q + L S N + + ++ + + + + + N
Sbjct: 608 EEIPEDF---CAFTDQ----VEGLGFSHNKL-----KYIPNIFNAKSVYVMGSVDFSYNK 655
Query: 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 568
+G + S + + N ++ K +F + +
Sbjct: 656 IG---------SEGRNISCSMDDYKGINASTVTLSYNEIQ----KFPTELFATGSPISTI 702
Query: 569 EMPQN---GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625
+ N I + ++ L ++L N +T + + LP L+ ++
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS---LSDDFRATTLPYLSNMD 759
Query: 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL--DLVKAMKNKTKLKQINVS 683
+ SS +++ L+ + + + + L Q+ +
Sbjct: 760 VSYNCF-----SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814
Query: 684 ENQFGE 689
N +
Sbjct: 815 SNDIRK 820
Score = 46.8 bits (111), Expect = 4e-05
Identities = 35/249 (14%), Positives = 70/249 (28%), Gaps = 37/249 (14%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSKALH 522
R+ L L+ + + L L+ L + +L
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTE------LKVLSFGTHSETVSGRLFGDEELTPDMSE 377
Query: 523 DCYESSKKEGSPLALKVFIAGR--NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI 580
+ + + L + L++ + K + ++ Q G I
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437
Query: 581 TALSDAFEENKNLRHLNLNDNTITY---------------KGAIPLGQALSKLPSLAILN 625
T +S A + L+ + ++ TY K + S L L +
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497
Query: 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS-----VQGGLDLVKAMKNKTKLKQI 680
L +C + + +L D L+ +N+ CN L K++
Sbjct: 498 LYNCPNM----TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553
Query: 681 NVSENQFGE 689
+ N E
Sbjct: 554 YMGYNNLEE 562
Score = 44.1 bits (104), Expect = 3e-04
Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 35/224 (15%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
+L +L L N I E +E L ++N L K + + + +
Sbjct: 596 KLTDLKLDYNQIEEIP-EDFCAFTDQ-----VEGLGFSHNKL---------KYIPNIFNA 640
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAV-FKKLKTLERVEMPQNGIYHVGITALSDA 586
S + N++ +EG + ++ K V + N I ++
Sbjct: 641 ----KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF----PTEL 692
Query: 587 FEENKNLRHLNLNDNTITY---KGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643
F + + L++N +T P L ++L L S A L
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752
Query: 644 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
L +++++ N S N ++LK + +
Sbjct: 753 PY---LSNMDVSYNCFS-----SFPTQPLNSSQLKAFGIRHQRD 788
Score = 43.7 bits (103), Expect = 3e-04
Identities = 42/221 (19%), Positives = 73/221 (33%), Gaps = 30/221 (13%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 527
L +++L + + L DL L+ L + N K L D ++
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPE------LQSLNIACNRGISAAQLKADWTRLADDEDT 546
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
K +++F G N LE A +A +K+ L ++ N + H+ +AF
Sbjct: 547 GPK------IQIFYMGYNNLEEFPA---SASLQKMVKLGLLDCVHNKVRHL------EAF 591
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
N L L L+ N I IP + + L LK
Sbjct: 592 GTNVKLTDLKLDYNQIE---EIP-EDFCAFTDQVEGLGFSHNKLKY---IPNIFNAKSVY 644
Query: 648 TLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 687
+ V+ + N+I S + + +S N+
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685
Score = 39.5 bits (92), Expect = 0.006
Identities = 25/194 (12%), Positives = 45/194 (23%), Gaps = 38/194 (19%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRS-SCCFALEELKLNNNGL-----GITGCKLLSKAL 521
+ + LS+N I L + + L + L N L L
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY--- 754
Query: 522 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG-- 579
L N + L+ +
Sbjct: 755 ---------------LSNMDVSYNCFSS-----FPTQPLNSSQLKAFGIRHQRDAEGNRI 794
Query: 580 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 639
+ +L L + N I + P L IL++ D S +S+
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIRK---VD----EKLTPQLYILDIADNPNISIDVTSV 847
Query: 640 AKYLTDNTTLEDVN 653
Y+ + +
Sbjct: 848 CPYIEAGMYVLLYD 861
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 59.3 bits (144), Expect = 3e-09
Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 42/222 (18%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526
LDL N + + A LEEL+LN N + + A ++ +
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPH------LEELELNENIVS----AVEPGAFNNLF- 80
Query: 527 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 586
L+ NRL+ + VF L L ++++ +N I + L
Sbjct: 81 ---------NLRTLGLRSNRLKL----IPLGVFTGLSNLTKLDISENKIVIL----LDYM 123
Query: 587 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 646
F++ NL+ L + DN + Y I A S L SL L L C L S + L+
Sbjct: 124 FQDLYNLKSLEVGDNDLVY---ISHR-AFSGLNSLEQLTLEKCNLTSIPTEA----LSHL 175
Query: 647 TTLEDVNLTCNEIS-VQGGLDLVKAMKNKTKLKQINVSENQF 687
L + L I+ ++ + K +LK + +S +
Sbjct: 176 HGLIVLRLRHLNINAIRDY-----SFKRLYRLKVLEISHWPY 212
Score = 45.5 bits (108), Expect = 7e-05
Identities = 37/216 (17%), Positives = 58/216 (26%), Gaps = 54/216 (25%)
Query: 455 LRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC 514
L Y+ + L +L L I E L+ L L L+L + +
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG------LIVLRLRHLNINAIRD 193
Query: 515 KLLS-----KALHDCYESSKKEGSP-----LALKVFIAGRNRLEN--EGAKMLAAVFKKL 562
K L + +P L L L A + L
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA------VRHL 247
Query: 563 KTLERVEMPQNGIYHVG-------------------ITALS-DAFEENKNLRHLNLNDNT 602
L + + N I + + + AF LR LN++ N
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307
Query: 603 ITYKGAIPLGQALSKLPSLAILNLG------DCLLK 632
+T + + +L L L DC L
Sbjct: 308 LT---TLEES-VFHSVGNLETLILDSNPLACDCRLL 339
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 57.3 bits (139), Expect = 2e-08
Identities = 51/320 (15%), Positives = 107/320 (33%), Gaps = 61/320 (19%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALS-KHEHFKRAL-WKDMFTGRMKTEIPDALRYLGNGLQ 463
L LE N + + ++ + ++ + KR+ + + + + ++L
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC--- 330
Query: 464 QAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHD 523
L L++ DN I L+ L+ L L+N+ + ++
Sbjct: 331 -----LEHLNMEDNDIPGIKSNMFTGLIN------LKYLSLSNSFTSLRTLT--NETFVS 377
Query: 524 CYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV----- 578
S L + +N++ + + F L LE +++ N I
Sbjct: 378 LAHSP--------LHILNLTKNKISK----IESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 579 --GITAL--------------SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 622
G+ + ++F +L+ L L + + P L +L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP--SPFQPLRNLT 483
Query: 623 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV----QGGLDLVKAMKNKTKLK 678
IL+L + + + L LE ++L N ++ + +K + L
Sbjct: 484 ILDLSNNNIA----NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539
Query: 679 QINVSENQFGEEGVEEMEKL 698
+N+ N F E VE + L
Sbjct: 540 ILNLESNGFDEIPVEVFKDL 559
Score = 50.0 bits (120), Expect = 4e-06
Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 38/226 (16%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
+ L+L+ N + + L L + N + KL +
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQ------LTSLDVGFNTIS----KLEPELCQKLPM-- 74
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 588
LKV N L + F L + + N I + ++ F
Sbjct: 75 --------LKVLNLQHNELSQ----LSDKTFAFCTNLTELHLMSNSIQKI----KNNPFV 118
Query: 589 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 648
+ KNL L+L+ N ++ LG +L +L L L + +++ + + + N++
Sbjct: 119 KQKNLITLDLSHNGLSS---TKLG-TQVQLENLQELLLSNNKIQALKSEELD--IFANSS 172
Query: 649 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 694
L+ + L+ N+I +L + ++ Q G E+
Sbjct: 173 LKKLELSSNQIKEFSPGCF----HAIGRLFGLFLNNVQLGPSLTEK 214
Score = 46.9 bits (112), Expect = 3e-05
Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 36/225 (16%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L LDLS N +G + A L + LE L N + L S +LH +
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQ------LEYFFLEYNNIQ----HLFSHSLHGLFN- 297
Query: 528 SKKEGSPLALKVFIAGRNRLE-----NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 582
++ R+ + K+ F+ LK LE + M N I +
Sbjct: 298 ---------VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK--- 345
Query: 583 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 642
S+ F NL++L+L+++ + + L ILNL + + + +
Sbjct: 346 -SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404
Query: 643 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
LE ++L NEI + + + +I +S N++
Sbjct: 405 ----GHLEVLDLGLNEIG---QELTGQEWRGLENIFEIYLSYNKY 442
Score = 46.5 bits (111), Expect = 4e-05
Identities = 46/256 (17%), Positives = 81/256 (31%), Gaps = 47/256 (18%)
Query: 451 IPDALRYLGNGLQQAGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGL 509
DA +LG+ L LDL N + + L + E+ L+ N
Sbjct: 397 ESDAFSWLGH--------LEVLDLGLNEIGQELTGQEWRGLEN------IFEIYLSYNKY 442
Query: 510 GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 569
L + L+ + R L+N + + F+ L+ L ++
Sbjct: 443 LQ----LTRNSFALVPS----------LQRLMLRRVALKNVDS--SPSPFQPLRNLTILD 486
Query: 570 MPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITY----KGAIPLGQALSKLPSLAILN 625
+ N I ++ D E + L L+L N + L L L ILN
Sbjct: 487 LSNNNIANI----NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 685
L D L+ ++L N ++ L N+ LK +N+ +N
Sbjct: 543 LESNGFDEIPVEVF----KDLFELKIIDLGLNNLN---TLP-ASVFNNQVSLKSLNLQKN 594
Query: 686 QFGEEGVEEMEKLMKS 701
+ ++
Sbjct: 595 LITSVEKKVFGPAFRN 610
Score = 43.5 bits (103), Expect = 3e-04
Identities = 33/197 (16%), Positives = 59/197 (29%), Gaps = 33/197 (16%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L L L A V+ + L L L+NN + + L
Sbjct: 455 SLQRLMLRRVALK--NVDSSPSPFQP--LRNLTILDLSNNNIA----NINDDMLEGLE-- 504
Query: 528 SKKEGSPLALKVFIAGRNRL----ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL 583
L++ N L ++ K L L + + NG +
Sbjct: 505 --------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP---- 552
Query: 584 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643
+ F++ L+ ++L N + +P + SL LNL L+ S
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNT---LP-ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608
Query: 644 TDNTTLEDVNLTCNEIS 660
L ++++ N
Sbjct: 609 ---RNLTELDMRFNPFD 622
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 56.6 bits (137), Expect = 3e-08
Identities = 41/239 (17%), Positives = 77/239 (32%), Gaps = 41/239 (17%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
+E+P L L L +L LS N F + ++ L L + N
Sbjct: 291 SELPSGLVGLST--------LKKLVLSANKFENLCQISASNFPS------LTHLSIKGNT 336
Query: 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 568
+ L + L + L+ + +E + L L+ +
Sbjct: 337 KRLE---LGTGCLENLE----------NLRELDLSHDDIETSDCC--NLQLRNLSHLQSL 381
Query: 569 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628
+ N + ++AF+E L L+L + L L +LNL
Sbjct: 382 NLSYNEPLSLK----TEAFKECPQLELLDLAFTRLK---VKDAQSPFQNLHLLKVLNLSH 434
Query: 629 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
LL S + L+ +NL N +G + +++ +L+ + +S
Sbjct: 435 SLLD----ISSEQLFDGLPALQHLNLQGNHFP-KGNIQKTNSLQTLGRLEILVLSFCDL 488
Score = 52.7 bits (127), Expect = 4e-07
Identities = 31/223 (13%), Positives = 71/223 (31%), Gaps = 34/223 (15%)
Query: 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDC 524
A L+ + +GL + S L + +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQS----LWLGTFEDMDDE----DISPAVFEGL 251
Query: 525 YESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 584
E S ++ ++ N + + F L+ +++ + + L
Sbjct: 252 CEMS--------VESINLQKHYFFN----ISSNTFHCFSGLQELDLTATHL-----SELP 294
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 644
L+ L L+ N + + S PSL L++ + L
Sbjct: 295 SGLVGLSTLKKLVLSANKFEN---LC-QISASNFPSLTHLSIKGNTKRL---ELGTGCLE 347
Query: 645 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
+ L +++L+ ++I +L ++N + L+ +N+S N+
Sbjct: 348 NLENLRELDLSHDDIETSDCCNL--QLRNLSHLQSLNLSYNEP 388
Score = 45.4 bits (108), Expect = 8e-05
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 16/129 (12%)
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
F +L L +++ + IY + D F+ L L L N + + + ALS
Sbjct: 53 FSRLINLTFLDLTRCQIYWIH----EDTFQSQHRLDTLVLTANPLIF---MAET-ALSGP 104
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 678
+L L + S L + TLE + L N IS + L KLK
Sbjct: 105 KALKHLFFIQTGIS----SIDFIPLHNQKTLESLYLGSNHIS---SIKL-PKGFPTEKLK 156
Query: 679 QINVSENQF 687
++ N
Sbjct: 157 VLDFQNNAI 165
Score = 43.1 bits (102), Expect = 5e-04
Identities = 37/219 (16%), Positives = 63/219 (28%), Gaps = 37/219 (16%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
L LDL+ I + R L+ L L N L + AL
Sbjct: 59 LTFLDLTRCQIYWIHEDTFQSQHR------LDTLVLTANPLI----FMAETALSGP---- 104
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 588
ALK + + + + KTLE + + N I +
Sbjct: 105 ------KALKHLFFIQTGI----SSIDFIPLHNQKTLESLYLGSNHISSIK----LPKGF 150
Query: 589 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 648
+ L+ L+ +N I Y + + +S L L+L L + I D+
Sbjct: 151 PTEKLKVLDFQNNAIHY---LS-KEDMSSLQQATNLSLN---LNGNDIAGIEPGAFDSAV 203
Query: 649 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
+ +N + + L L +
Sbjct: 204 FQSLNFGGTQNLLVIFKGL--KNSTIQSLWLGTFEDMDD 240
Score = 40.8 bits (96), Expect = 0.003
Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 33/193 (17%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
+L LDL+ + L L+ L L+++ L I+ +L
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHL-----LKVLNLSHSLLDISSEQLFDGLPA----- 450
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L+ N + + + L LE + + + + AF
Sbjct: 451 ---------LQHLNLQGNHFPKGNIQKTNS-LQTLGRLEILVLSFCDLSSID----QHAF 496
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
K + H++L+ N +T + ALS L + LNL + + L +
Sbjct: 497 TSLKMMNHVDLSHNRLTS---SSIE-ALSHLKGI-YLNLASNHIS----IILPSLLPILS 547
Query: 648 TLEDVNLTCNEIS 660
+NL N +
Sbjct: 548 QQRTINLRQNPLD 560
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 56.3 bits (135), Expect = 4e-08
Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 50/241 (20%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSKALH 522
A ++ +L + D + + +++++ NN+ + GI + L
Sbjct: 21 AETIKDNLKKK--------SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV-TKL- 70
Query: 523 DCYESSKKEGSPLA----LKVFIAGRNRLEN-EGAKMLAAVFKKLKTLERVEMPQNGIYH 577
+ + PL L N++++ K LK L+ + + NGI
Sbjct: 71 FLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS-------LKDLKKLKSLSLEHNGISD 123
Query: 578 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 637
+ + L L L +N IT LS+L L L+L D +
Sbjct: 124 I------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP- 170
Query: 638 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 697
L T L+++ L+ N IS ++A+ L + + + + +
Sbjct: 171 -----LAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNKPINHQSN 219
Query: 698 L 698
L
Sbjct: 220 L 220
Score = 46.6 bits (110), Expect = 3e-05
Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 48/230 (20%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSKALHDC 524
+ ++ +++ + +G+ L + +L LN N L +T K L
Sbjct: 45 IDQIIANNSDIKSV--QGIQYLPN------VTKLFLNGNKLTDIKPLTNLKNLGWL--FL 94
Query: 525 YESSKKEGSPLA----LKVFIAGRNRLEN-EGAKMLAAVFKKLKTLERVEMPQNGIYHVG 579
E+ K+ S L LK N + + G L LE + + N I +
Sbjct: 95 DENKIKDLSSLKDLKKLKSLSLEHNGISDING-------LVHLPQLESLYLGNNKITDI- 146
Query: 580 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 639
L L+L DN I+ I L+ L L L L + S +
Sbjct: 147 -----TVLSRLTKLDTLSLEDNQISD---IV---PLAGLTKLQNLYLSKNHI-----SDL 190
Query: 640 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689
+ L L+ + L E + N + ++
Sbjct: 191 -RALAGLKNLDVLELFSQECL----NKPINHQSNLVVPNTVKNTDGSLVT 235
Score = 39.7 bits (92), Expect = 0.005
Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 25/141 (17%)
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
+ + + + E ++ + N++ I Q + L
Sbjct: 17 DDAFAETIKDNLKKKSVTDA------VTQNELNSIDQIIANNSDIKS------VQGIQYL 64
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 678
P++ L L L K LT+ L + L N+I + ++K+ KLK
Sbjct: 65 PNVTKLFLNGNKLTD------IKPLTNLKNLGWLFLDENKIKD------LSSLKDLKKLK 112
Query: 679 QINVSENQFGE-EGVEEMEKL 698
+++ N + G+ + +L
Sbjct: 113 SLSLEHNGISDINGLVHLPQL 133
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 56.0 bits (135), Expect = 5e-08
Identities = 46/228 (20%), Positives = 82/228 (35%), Gaps = 38/228 (16%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
++ + A L RSS + L L++ + L S+ +
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSS----VRHLDLSHGFV----FSLNSRVFETLKD- 291
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
LKV N++ K+ F L L+ + + N + + S F
Sbjct: 292 ---------LKVLNLAYNKIN----KIADEAFYGLDNLQVLNLSYNLLGELY----SSNF 334
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS-AGASSIAK-YLTD 645
+ +++L N I I L L L+L D L + SI +L+
Sbjct: 335 YGLPKVAYIDLQKNHIAI---IQDQ-TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390
Query: 646 N--TTLEDVNLTCNEISVQG----GLDLVKAMKNKTKLKQINVSENQF 687
N TL +NLT N I + LD++ + L+ + +++N+F
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438
Score = 54.4 bits (131), Expect = 2e-07
Identities = 38/154 (24%), Positives = 55/154 (35%), Gaps = 30/154 (19%)
Query: 555 LAAVFKKLKTLERVEMPQNGIYHVGITALS---------------------DAFEENKNL 593
L V + L T ER+ + N I V ++ +AF NL
Sbjct: 16 LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75
Query: 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVN 653
R L+L + I + + A L L L L C L A Y + L ++
Sbjct: 76 RILDLGSSKIYF---LHPD-AFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLD 129
Query: 654 LTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
L+ N+I L L + LK I+ S NQ
Sbjct: 130 LSKNQIRS---LYLHPSFGKLNSLKSIDFSSNQI 160
Score = 46.3 bits (110), Expect = 6e-05
Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617
F+ L L +++ + IY + DAF+ +L L L ++
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLH----PDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRN 121
Query: 618 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 677
L +L L+L ++S + +L+ ++ + N+I + +L + ++ KT L
Sbjct: 122 LKALTRLDLSKNQIRSL---YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKT-L 176
Query: 678 KQINVSENQFGEEGVEEMEKLMKSF 702
+++ N + K M F
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPF 201
Score = 40.6 bits (95), Expect = 0.003
Identities = 27/137 (19%), Positives = 44/137 (32%), Gaps = 24/137 (17%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L L L+ N F + S LE+L L N L + L + +
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPS-----LEQLFLGENMLQLAWETELCWDVFEGLSH 481
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L+V N L + + VF L L + + N + + L
Sbjct: 482 ---------LQVLYLNHNYLNS----LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--- 525
Query: 588 EENKNLRHLNLNDNTIT 604
NL L+++ N +
Sbjct: 526 ---ANLEILDISRNQLL 539
Score = 39.0 bits (91), Expect = 0.008
Identities = 42/246 (17%), Positives = 81/246 (32%), Gaps = 43/246 (17%)
Query: 452 PDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGI 511
+A R L N L LDL + + + L L EL+L GL
Sbjct: 66 KEAFRNLPN--------LRILDLGSSKIYFLHPDAFQGLFH------LFELRLYFCGL-- 109
Query: 512 TGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP 571
+ L + AL +N++ + L F KL +L+ ++
Sbjct: 110 SDAVLKDGYFRNL----------KALTRLDLSKNQIRSLY---LHPSFGKLNSLKSIDFS 156
Query: 572 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLP--SLAILNLGDC 629
N I+ V L + K L +L N++ + ++ G+ ++ L IL++
Sbjct: 157 SNQIFLVCEHEL--EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214
Query: 630 LLKS--------AGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 681
A + S A L + + I + + + ++ ++
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP-DQNTFAGLAR-SSVRHLD 272
Query: 682 VSENQF 687
+S
Sbjct: 273 LSHGFV 278
Score = 38.2 bits (89), Expect = 0.015
Identities = 38/188 (20%), Positives = 62/188 (32%), Gaps = 34/188 (18%)
Query: 469 LVELDLSDNAFGPI-GVEGLADLLRSSC--------CFALEELKLNNNGL-GITGCKLLS 518
L LDL DNA I + + D+ S + L+ N L + L
Sbjct: 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423
Query: 519 K------------ALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAA-VFKKLKTL 565
+ C +P +L+ G N L+ L VF+ L L
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENP-SLEQLFLGENMLQLAWETELCWDVFEGLSHL 482
Query: 566 ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625
+ + + N + + F LR L+LN N +T + +L IL+
Sbjct: 483 QVLYLNHNYLNSLP----PGVFSHLTALRGLSLNSNRLTV---LSHN---DLPANLEILD 532
Query: 626 LGDCLLKS 633
+ L +
Sbjct: 533 ISRNQLLA 540
Score = 34.8 bits (80), Expect = 0.19
Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 11/112 (9%)
Query: 583 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 642
L+ + L L+ N I + + L L +L LG
Sbjct: 16 LTQVPQVLNTTERLLLSFNYIRT---VTAS-SFPFLEQLQLLELGSQYTPLTIDKEA--- 68
Query: 643 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 694
+ L ++L ++I L A + L ++ + + +++
Sbjct: 69 FRNLPNLRILDLGSSKIYF---LH-PDAFQGLFHLFELRLYFCGLSDAVLKD 116
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 53.1 bits (128), Expect = 1e-07
Identities = 49/252 (19%), Positives = 83/252 (32%), Gaps = 55/252 (21%)
Query: 449 TEIPDALRYL---GNGLQ--QAGA-----RLVELDLSDNAFGPIGVEGLADLLRSSCCFA 498
IP A + + GN + A + L L L N I L
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL------ 81
Query: 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAV 558
LE+L L++N + + H L R L+ + +
Sbjct: 82 LEQLDLSDNAQ-LR--SVDPATFHGLG----------RLHTLHLDRCGLQE----LGPGL 124
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
F+ L L+ + + N + + D F + NL HL L+ N I+ +P A L
Sbjct: 125 FRGLAALQYLYLQDNALQALP----DDTFRDLGNLTHLFLHGNRISS---VPER-AFRGL 176
Query: 619 PSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKT 675
SL L L + A D L + L N + ++ A+
Sbjct: 177 HSLDRLLLHQNRVAHVHPHA------FRDLGRLMTLYLFANNLSALPTE-----ALAPLR 225
Query: 676 KLKQINVSENQF 687
L+ + +++N +
Sbjct: 226 ALQYLRLNDNPW 237
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 54.1 bits (130), Expect = 2e-07
Identities = 51/319 (15%), Positives = 95/319 (29%), Gaps = 62/319 (19%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWK-DMFTGRMKTEIPDALRYLGNGLQQ 464
L + L+ + + + IA + + L + F+ D L + +
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLV--LSSCEGFS-------TDGLAAIAATCR- 156
Query: 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGIT---------GCK 515
L ELDL ++ + L+ + +L L ++ ++ C
Sbjct: 157 ---NLKELDLRESDVDDVSGHWLSHFPDT--YTSLVSLNISCLASEVSFSALERLVTRCP 211
Query: 516 LLSK-ALHDCYESSKKEGSPLALKVFIAGRNRLE------------NEGAKMLAAVFKKL 562
L L+ L + +LE + L+
Sbjct: 212 NLKSLKLNRAVPLE-------KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264
Query: 563 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 622
K L + +G + L + L LNL+ T+ L + L + P L
Sbjct: 265 KELRCL----SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD---LVKLLCQCPKLQ 317
Query: 623 ILNLGDCLLKSAGASSIAKYLTDNTTL------EDVNLTCNEISVQGGLDLVKAMKNKTK 676
L + D ++ AG +A D L V ++ QG LV K
Sbjct: 318 RLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG---LVSVSMGCPK 373
Query: 677 LKQINVSENQFGEEGVEEM 695
L+ + Q + +
Sbjct: 374 LESVLYFCRQMTNAALITI 392
Score = 52.6 bits (126), Expect = 5e-07
Identities = 35/240 (14%), Positives = 75/240 (31%), Gaps = 28/240 (11%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLS-KALHDCY 525
+L L + D I GL L +S C L EL++ + L+ + L
Sbjct: 315 KLQRLWVLDY----IEDAGLEVL--ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368
Query: 526 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 585
K L+ + ++ N +A + + ++ + L
Sbjct: 369 MGCPK------LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422
Query: 586 AF----EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641
F E K+LR L+L+ +T K +G + +L++ G +
Sbjct: 423 GFGAIVEHCKDLRRLSLS-GLLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLS 478
Query: 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 701
L + + + L ++ ++ + +S + + + M
Sbjct: 479 GCDS---LRKLEIRDCPFGDKALLANASKLET---MRSLWMSSCSVSFGACKLLGQKMPK 532
Score = 38.0 bits (88), Expect = 0.016
Identities = 35/269 (13%), Positives = 71/269 (26%), Gaps = 58/269 (21%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFK-RALWKDMFTGRMKTEIPDALRYLGNGLQQ 464
L +LNL T+ + K + +D L L + +
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIED-----------AGLEVLASTCK- 338
Query: 465 AGARLVELDLSD------NAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS 518
L EL + + +GL + S C LE + + ++
Sbjct: 339 ---DLRELRVFPSEPFVMEPNVALTEQGLVSV--SMGCPKLESVLYFCRQMTNAALITIA 393
Query: 519 KAL------------HDCYESSKKEGSPLALKVFIAGRNRLEN---------EGAKMLAA 557
+ + E + + L + + +
Sbjct: 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGT 453
Query: 558 VFKKLKTLERVEMPQNGIYHVGIT--ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
KK++ L + G + + +LR L + D K L
Sbjct: 454 YAKKMEMLS--------VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA---LLANA 502
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLT 644
SKL ++ L + C + + + +
Sbjct: 503 SKLETMRSLWMSSCSVSFGACKLLGQKMP 531
Score = 29.9 bits (67), Expect = 4.6
Identities = 27/237 (11%), Positives = 65/237 (27%), Gaps = 56/237 (23%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDA-LRYLGNGLQQ 464
L S+ + A IA F+ + + + E D + +
Sbjct: 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK- 432
Query: 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDC 524
L L LS + + + + +E L + G G
Sbjct: 433 ---DLRRLSLSGL----LTDKVFEYI--GTYAKKMEMLSVAFAGDSDLG----------- 472
Query: 525 YESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 584
+ V +L ++E+ + A +
Sbjct: 473 ------------------------------MHHVLSGCDSLRKLEIRDCPFGDKALLANA 502
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641
+ +R L ++ ++++ LGQ + KL ++ +++ + + +
Sbjct: 503 SKL---ETMRSLWMSSCSVSFGACKLLGQKMPKL-NVEVIDERGAPDSRPESCPVER 555
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 54.3 bits (131), Expect = 2e-07
Identities = 55/346 (15%), Positives = 107/346 (30%), Gaps = 44/346 (12%)
Query: 363 KLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAK 422
K++SI + ++ L L + A E++ L L L N +N K
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMK 218
Query: 423 AIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPI 482
L+ E + L + G ++ AL L N + E L+ +
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN------LTIEEFRLAYLDYYLD 272
Query: 483 GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 542
+ L + L + F+L + + L +C +LK
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332
Query: 543 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG---------------------IT 581
N+ N + L +LE +++ +NG+ G +
Sbjct: 333 TSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 582 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641
+S F + L HL+ + + + L +L L++ + A
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQ---MSEFSVFLSLRNLIYLDISHTHTRVAFNGI--- 440
Query: 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
++LE + + N L L +++S+ Q
Sbjct: 441 -FNGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQL 482
Score = 52.4 bits (126), Expect = 6e-07
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
+ F L+ +++ + I + A++ +L L L N I + LG A
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQS---LALG-AF 96
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 675
S L SL L + L S + TL+++N+ N I L + N T
Sbjct: 97 SGLSSLQKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQS---FKLPEYFSNLT 149
Query: 676 KLKQINVSENQF 687
L+ +++S N+
Sbjct: 150 NLEHLDLSSNKI 161
Score = 48.9 bits (117), Expect = 7e-06
Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 39/221 (17%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L LDLS N G +D +S L+ L L+ NG+ + +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTS----LKYLDLSFNGV---------ITMSSNFLG 394
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
++ L+ + L+ +VF L+ L +++ + F
Sbjct: 395 LEQ------LEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAF----NGIF 441
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
+L L + N+ L ++L +L L+L C L+ ++ +
Sbjct: 442 NGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLS 494
Query: 648 TLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 687
+L+ +N+ N++ SV G T L++I + N +
Sbjct: 495 SLQVLNMASNQLKSVPDG-----IFDRLTSLQKIWLHTNPW 530
Score = 42.8 bits (101), Expect = 5e-04
Identities = 42/198 (21%), Positives = 60/198 (30%), Gaps = 38/198 (19%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L LDLS I L L L L N + L A
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSH------LSTLILTGNPIQ----SLALGAFSGLSS- 101
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L+ +A L + LKTL+ + + N I L + F
Sbjct: 102 ---------LQKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQSFK---LPEYF 145
Query: 588 EENKNLRHLNLNDNTITYKGAIPLG--QALSKLPSLAI-LNLGDCLLKSAGASSIAKYLT 644
NL HL+L+ N I I + L ++P L + L+L + I
Sbjct: 146 SNLTNLEHLDLSSNKIQS---IYCTDLRVLHQMPLLNLSLDLSLNPMN-----FIQPGAF 197
Query: 645 DNTTLEDVNLTCNEISVQ 662
L + L N S+
Sbjct: 198 KEIRLHKLTLRNNFDSLN 215
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 53.1 bits (128), Expect = 2e-07
Identities = 56/289 (19%), Positives = 86/289 (29%), Gaps = 83/289 (28%)
Query: 449 TEIPDALRYL---GNGLQ--QAGA-----RLVELDLSDNAFGPIGVEGLADLLRSSCCFA 498
++P L N + + G L L L +N I A L
Sbjct: 48 KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL------VK 101
Query: 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAV 558
LE L L+ N L E P L+ N + K+ +V
Sbjct: 102 LERLYLSKNQL-----------------KELPEKMPKTLQELRVHENEIT----KVRKSV 140
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG------ 612
F L + VE+ N + GI + AF+ K L ++ + D IT IP G
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIE--NGAFQGMKKLSYIRIADTNITT---IPQGLPPSLT 195
Query: 613 --------------QALSKLPSLAILNLGDCLLKS--AGA-----------------SSI 639
+L L +LA L L + + G+ +
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255
Query: 640 AKYLTDNTTLEDVNLTCNEISV--QGGLDLVKAMKNKTKLKQINVSENQ 686
L D+ ++ V L N IS K +++ N
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304
Score = 43.8 bits (104), Expect = 2e-04
Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 29/164 (17%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526
L EL L N + L L L +L L+ N + + + +L +
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGL------NNLAKLGLSFNSIS----AVDNGSLANTP- 240
Query: 527 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL--S 584
L+ N+L + K ++ V + N I +G
Sbjct: 241 ---------HLRELHLNNNKL-----VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628
+ + ++L N + Y I + A + LG+
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWE-IQPS-TFRCVYVRAAVQLGN 328
Score = 42.7 bits (101), Expect = 4e-04
Identities = 43/240 (17%), Positives = 81/240 (33%), Gaps = 58/240 (24%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
++P L LDL +N I +L L L L NN
Sbjct: 44 EKVPKDL----------PPDTALLDLQNNKITEIKDGDFKNLKN------LHTLILINNK 87
Query: 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 568
+ K+ A L+ +N+L+ ++ + K L+ L
Sbjct: 88 IS----KISPGAFAPLV----------KLERLYLSKNQLK----ELPEKMPKTLQELR-- 127
Query: 569 EMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627
++ IT + F + + L N + G I G A + L+ + +
Sbjct: 128 ------VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG-IENG-AFQGMKKLSYIRIA 179
Query: 628 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 686
D + ++I + L + L +++L N+I V ++K L ++ +S N
Sbjct: 180 DTNI-----TTIPQGLPPS--LTELHLDGNKITKVDAA-----SLKGLNNLAKLGLSFNS 227
Score = 36.9 bits (86), Expect = 0.029
Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 25/136 (18%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L +L LS N+ + LA+ L EL LNNN L + L D
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPH------LRELHLNNNKL-----VKVPGGLADH--- 262
Query: 528 SKKEGSPLALKVFIAGRNRLEN--EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 585
++V N + K + V + N + + I
Sbjct: 263 -------KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--S 313
Query: 586 AFEENKNLRHLNLNDN 601
F + L +
Sbjct: 314 TFRCVYVRAAVQLGNY 329
Score = 29.6 bits (67), Expect = 5.2
Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 8/65 (12%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
++P L + + L +N IG ++ + + L +N
Sbjct: 253 VKVPGGLADHKY--------IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304
Query: 509 LGITG 513
+
Sbjct: 305 VQYWE 309
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 53.9 bits (130), Expect = 2e-07
Identities = 57/349 (16%), Positives = 105/349 (30%), Gaps = 50/349 (14%)
Query: 363 KLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAK 422
K++SI + ++ L L + A E++ L L L N +N K
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMK 218
Query: 423 AIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGN-------------------GLQ 463
L+ E + L + G ++ AL L N L
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278
Query: 464 QAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLS-KAL 521
+ L + + S F + L+L N KL S K L
Sbjct: 279 NCLTNVSSFSLVSV--------TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330
Query: 522 HDCYESSKKEGSPL---ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 578
S + +L+ RN L +G + +L+ +++ NG+
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG--CCSQSDFGTTSLKYLDLSFNGV--- 385
Query: 579 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 638
+S F + L HL+ + + L +L L++ + +
Sbjct: 386 --ITMSSNFLGLEQLEHLDFQHSNLK--QMSEFS-VFLSLRNLIYLDISHTHTR----VA 436
Query: 639 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
++LE + + N L L +++S+ Q
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQL 482
Score = 48.5 bits (116), Expect = 1e-05
Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
F L+ +++ + I + A++ +L L L N I + LG A S L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQS---LALG-AFSGL 99
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 678
SL L + L S + TL+++N+ N I L + N T L+
Sbjct: 100 SSLQKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSNLTNLE 152
Query: 679 QINVSENQF 687
+++S N+
Sbjct: 153 HLDLSSNKI 161
Score = 45.0 bits (107), Expect = 1e-04
Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 36/219 (16%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
LDLS N +G L+ L L+ + + A
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPE------LQVLDLSRCEIQ----TIEDGAYQSLSH-- 77
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 588
L I N +++ + F L +L+++ + + + +
Sbjct: 78 --------LSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASL----ENFPIG 121
Query: 589 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 648
K L+ LN+ N I L + S L +L L+L ++S + +
Sbjct: 122 HLKTLKELNVAHNLIQS---FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 649 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
++L+ N ++ + + +L ++ + N
Sbjct: 179 NLSLDLSLNPMNF-----IQPGAFKEIRLHKLTLRNNFD 212
Score = 35.8 bits (83), Expect = 0.068
Identities = 30/193 (15%), Positives = 68/193 (35%), Gaps = 33/193 (17%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
+L LD + + + LR+ L L +++ + + +
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRN-----LIYLDISHTHTRV----AFNGIFNGLS-- 445
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
+L+V N + L +F +L+ L +++ Q + + AF
Sbjct: 446 --------SLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL----SPTAF 490
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
+L+ LN++ N L SL +L+ + ++ + + +
Sbjct: 491 NSLSSLQVLNMSHNNFF--SLDT--FPYKCLNSLQVLDYSLNHIMTSKKQELQHFP---S 543
Query: 648 TLEDVNLTCNEIS 660
+L +NLT N+ +
Sbjct: 544 SLAFLNLTQNDFA 556
Score = 34.6 bits (80), Expect = 0.18
Identities = 33/255 (12%), Positives = 71/255 (27%), Gaps = 36/255 (14%)
Query: 446 RMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLN 505
++T A + L + L L L+ N + + + L L++L
Sbjct: 63 EIQTIEDGAYQSLSH--------LSTLILTGNPIQSLALGAFSGLSS------LQKLVAV 108
Query: 506 NNGL------GITGCKLLSK-ALHDCYESSKKEGSPLA----LKVFIAGRNRLENEGAKM 554
L I K L + + S K + L+ N++++
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 555 LAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614
L + + +++ N + + A L L L +N + +
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLHKLTLRNNFDS--LNVM-KTC 220
Query: 615 LSKLPSLAILNLGDCLLKSAG--ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 672
+ L L + L ++ G L L + D++
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD-DIIDLFN 279
Query: 673 NKTKLKQINVSENQF 687
T + ++
Sbjct: 280 CLTNVSSFSLVSVTI 294
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 53.1 bits (128), Expect = 3e-07
Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 36/219 (16%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
+DLS N + ++ L+ L L+ + + KA H +
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSE------LQWLDLSRCEIE----TIEDKAWHGLHH-- 81
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 588
L I N +++ F L +LE + + + + S
Sbjct: 82 --------LSNLILTGNPIQS----FSPGSFSGLTSLENLVAVETKLASL----ESFPIG 125
Query: 589 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 648
+ L+ LN+ N I L S L +L ++L +++ + + +
Sbjct: 126 QLITLKKLNVAHNFIHS---CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182
Query: 649 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
++++ N I KL ++ + N
Sbjct: 183 NLSLDMSLNPIDFIQDQAF-----QGIKLHELTLRGNFN 216
Score = 48.1 bits (115), Expect = 1e-05
Identities = 51/351 (14%), Positives = 97/351 (27%), Gaps = 55/351 (15%)
Query: 363 KLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAK 422
+++I+V Q + L + + A +K L L L GN N K
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMK 222
Query: 423 AIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPI 482
L+ + L + ++ P + L + + E L+
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD------VTIDEFRLTYTNDFSD 276
Query: 483 GVEGLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSKALHDCYESSKKEGSPLAL 537
+ L + + L + K S ++ C L
Sbjct: 277 DIVKFHCLAN------VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL 330
Query: 538 KVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG------------------ 579
K N+ L +L +++ +N + G
Sbjct: 331 KSLTLTMNKGSISFK------KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384
Query: 580 ---ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 636
+S F + L+HL+ +T+ + A L L L++ K
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLK---RVTEFSAFLSLEKLLYLDISYTNTK---- 437
Query: 637 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
T+L + + N L N T L +++S+ Q
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFK---DNTLSNVFANTTNLTFLDLSKCQL 485
Score = 42.7 bits (101), Expect = 5e-04
Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 42/212 (19%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
+ L L LD + + L L L ++
Sbjct: 389 IIMSANFMGLEE--------LQHLDFQHSTLKRVTEFSAFLSLEK-----LLYLDISYTN 435
Query: 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 568
I +L N ++ L+ VF L +
Sbjct: 436 TKI----DFDGIFLGLT----------SLNTLKMAGNSFKDNT---LSNVFANTTNLTFL 478
Query: 569 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628
++ + + + F+ L+ LN++ N + + + ++L SL+ L+
Sbjct: 479 DLSKCQLEQIS----WGVFDTLHRLQLLNMSHNNLLF---LDSS-HYNQLYSLSTLDCSF 530
Query: 629 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 660
++ +S +L NLT N ++
Sbjct: 531 NRIE----TSKGILQHFPKSLAFFNLTNNSVA 558
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 52.8 bits (127), Expect = 4e-07
Identities = 47/222 (21%), Positives = 80/222 (36%), Gaps = 45/222 (20%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526
+ L+L +N I + L LE L+L N + ++ A +
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHH------LEVLQLGRNSIR----QIEVGAFNGLA- 123
Query: 527 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 586
+L N L + + F+ L L + + N I + S A
Sbjct: 124 ---------SLNTLELFDNWLTV----IPSGAFEYLSKLRELWLRNNPIESIP----SYA 166
Query: 587 FEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 645
F +L L+L + + Y I G A L +L LNLG C +K LT
Sbjct: 167 FNRVPSLMRLDLGELKKLEY---ISEG-AFEGLFNLKYLNLGMCNIKDMPN------LTP 216
Query: 646 NTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 686
LE++ ++ N ++ G + + LK++ V +Q
Sbjct: 217 LVGLEELEMSGNHFPEIRPG-----SFHGLSSLKKLWVMNSQ 253
Score = 48.2 bits (115), Expect = 1e-05
Identities = 42/226 (18%), Positives = 71/226 (31%), Gaps = 53/226 (23%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L L+L DN I L + L EL L NN + + S A +
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSK------LRELWLRNNPIE----SIPSYAFNRVP-- 171
Query: 528 SKKEGSPLALKV-FIAGRNRLEN--EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 584
+L + +LE EGA F+ L L+ + + I +
Sbjct: 172 --------SLMRLDLGELKKLEYISEGA------FEGLFNLKYLNLGMCNIKDM------ 211
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKY 642
L L ++ N I G + L SL L + + + A
Sbjct: 212 PNLTPLVGLEELEMSGNHFPE---IRPG-SFHGLSSLKKLWVMNSQVSLIERNA------ 261
Query: 643 LTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 687
+L ++NL N + S+ L ++++ N +
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHD-----LFTPLRYLVELHLHHNPW 302
Score = 47.8 bits (114), Expect = 1e-05
Identities = 41/204 (20%), Positives = 64/204 (31%), Gaps = 50/204 (24%)
Query: 449 TEIP-DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 507
T IP A YL L EL L +N I + L L L
Sbjct: 136 TVIPSGAFEYLSK--------LRELWLRNNPIESIPSYAFNRVPS------LMRLDLGEL 181
Query: 508 ------------GLGITGCKLLSKALHDCYESSKKEGSPL-ALKVFIAGRNRLENEGAKM 554
GL L L C +PL L+ N +
Sbjct: 182 KKLEYISEGAFEGLF----NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE----I 233
Query: 555 LAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614
F L +L+++ + + + + +AF+ +L LNL N ++ ++P
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIE----RNAFDGLASLVELNLAHNNLS---SLPHD-L 285
Query: 615 LSKLPSLAILNLG------DCLLK 632
+ L L L+L DC +
Sbjct: 286 FTPLRYLVELHLHHNPWNCDCDIL 309
Score = 34.3 bits (79), Expect = 0.18
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 18/99 (18%)
Query: 592 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTL 649
N R+LNL +N I I L L +L LG ++ GA +L
Sbjct: 76 NTRYLNLMENNIQ---MIQ-ADTFRHLHHLEVLQLGRNSIRQIEVGA------FNGLASL 125
Query: 650 EDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 687
+ L N + + G A + +KL+++ + N
Sbjct: 126 NTLELFDNWLTVIPSG-----AFEYLSKLRELWLRNNPI 159
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 52.0 bits (125), Expect = 4e-07
Identities = 44/240 (18%), Positives = 86/240 (35%), Gaps = 48/240 (20%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSKALH 522
A ++ +L + D + + +++++ NN+ + GI + L
Sbjct: 24 AETIKDNLKKK--------SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV-TKL- 73
Query: 523 DCYESSKKEGSPLA----LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 578
+ + PLA L N++++ + K LK L+ + + NGI +
Sbjct: 74 FLNGNKLTDIKPLANLKNLGWLFLDENKVKD------LSSLKDLKKLKSLSLEHNGISDI 127
Query: 579 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 638
+ L L L +N IT I LS+L L L+L D +
Sbjct: 128 ------NGLVHLPQLESLYLGNNKIT---DI---TVLSRLTKLDTLSLEDNQISDIVP-- 173
Query: 639 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 698
L T L+++ L+ N IS ++A+ L + + + + + L
Sbjct: 174 ----LAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNKPINHQSNL 223
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 51.8 bits (125), Expect = 6e-07
Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 54/219 (24%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 527
L L L+ N + LA L +L N + IT +++
Sbjct: 179 LYSLSLNYNQIE--DISPLASLT------SLHYFTAYVNQITDITPVANMTR-------- 222
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L G N++ + + L L +E+ N I + ++ A
Sbjct: 223 ---------LNSLKIGNNKITD------LSPLANLSQLTWLEIGTNQI-----SDIN-AV 261
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
++ L+ LN+ N I+ I L+ L L L L + L + I T
Sbjct: 262 KDLTKLKMLNVGSNQIS---DIS---VLNNLSQLNSLFLNNNQLGNEDMEVIGG----LT 311
Query: 648 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 686
L + L+ N I+ ++ + + +K+ + +
Sbjct: 312 NLTTLFLSQNHITD------IRPLASLSKMDSADFANQV 344
Score = 46.8 bits (112), Expect = 2e-05
Identities = 40/234 (17%), Positives = 79/234 (33%), Gaps = 56/234 (23%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCY 525
A + L + D++ ++ +L + + I G + L+
Sbjct: 22 AEGIRAVLQKA--------SVTDVVTQEELESITKLVVAGEKVASIQGIEYLTN------ 67
Query: 526 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 585
L+ N++ + L L + + N I +
Sbjct: 68 -----------LEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------S 104
Query: 586 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 645
A + NLR L LN++ I+ I L+ L + LNLG S L++
Sbjct: 105 ALQNLTNLRELYLNEDNISD---IS---PLANLTKMYSLNLGANHN-----LSDLSPLSN 153
Query: 646 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE-EGVEEMEKL 698
T L + +T +++ V + N T L ++++ NQ + + + L
Sbjct: 154 MTGLNYLTVTESKVKD------VTPIANLTDLYSLSLNYNQIEDISPLASLTSL 201
Score = 46.4 bits (111), Expect = 3e-05
Identities = 45/237 (18%), Positives = 83/237 (35%), Gaps = 45/237 (18%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSK-ALH 522
L EL L+++ + LA+L + + L L N ++ L+ +
Sbjct: 112 LRELYLNEDNIS--DISPLANLTK------MYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163
Query: 523 DCYESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 581
+ + L L N++E+ L +L N I +
Sbjct: 164 ESKVKDVTPIANLTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYVNQITDI--- 214
Query: 582 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641
L L + +N IT + L+ L L L +G + A
Sbjct: 215 ---TPVANMTRLNSLKIGNNKIT---DLS---PLANLSQLTWLEIGTNQISDINA----- 260
Query: 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 698
+ D T L+ +N+ N+IS + + N ++L + ++ NQ G E +E + L
Sbjct: 261 -VKDLTKLKMLNVGSNQISD------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310
Score = 33.7 bits (78), Expect = 0.27
Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 24/143 (16%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSK-ALH 522
RL L + +N + LA+L L L++ N + + L +
Sbjct: 222 RLNSLKIGNNKI--TDLSPLANLS------QLTWLEIGTNQISDINAVKDLTKLKMLNVG 273
Query: 523 DCYESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 581
S + L L N+L NE ++ L L + + QN I +
Sbjct: 274 SNQISDISVLNNLSQLNSLFLNNNQLGNEDMEV----IGGLTNLTTLFLSQNHITDI--- 326
Query: 582 ALSDAFEENKNLRHLNLNDNTIT 604
+ + + I
Sbjct: 327 ---RPLASLSKMDSADFANQVIK 346
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 51.3 bits (123), Expect = 1e-06
Identities = 47/222 (21%), Positives = 83/222 (37%), Gaps = 45/222 (20%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526
L+L +N I V L LE L+L+ N + + A +
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRH------LEILQLSRNHIR----TIEIGAFNGLA- 112
Query: 527 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 586
L NRL + F L L+ + + N I + S A
Sbjct: 113 ---------NLNTLELFDNRLTT----IPNGAFVYLSKLKELWLRNNPIESIP----SYA 155
Query: 587 FEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 645
F +LR L+L + ++Y I G A L +L LNL C L+ LT
Sbjct: 156 FNRIPSLRRLDLGELKRLSY---ISEG-AFEGLSNLRYLNLAMCNLREIPN------LTP 205
Query: 646 NTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 686
L++++L+ N + +++ G + + L+++ + ++Q
Sbjct: 206 LIKLDELDLSGNHLSAIRPG-----SFQGLMHLQKLWMIQSQ 242
Score = 44.7 bits (106), Expect = 1e-04
Identities = 33/173 (19%), Positives = 54/173 (31%), Gaps = 43/173 (24%)
Query: 468 RLVELDLSD-NAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526
L LDL + I L L L L L
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGL------SNLRYLNLAMCNL----------------- 197
Query: 527 SSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 585
+PL L N L + F+ L L+++ M Q+ I + +
Sbjct: 198 REIPNLTPLIKLDELDLSGNHLSA----IRPGSFQGLMHLQKLWMIQSQIQVIE----RN 249
Query: 586 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG------DCLLK 632
AF+ ++L +NL N +T +P + L L ++L +C +
Sbjct: 250 AFDNLQSLVEINLAHNNLT---LLPHD-LFTPLHHLERIHLHHNPWNCNCDIL 298
Score = 42.8 bits (101), Expect = 4e-04
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 19/133 (14%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
F L L +E+ N + + + AF L+ L L +N I +IP A
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIP----NGAFVYLSKLKELWLRNNPIE---SIPSY-AF 156
Query: 616 SKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 674
+++PSL L+LG+ L + + L +NL + + +
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGA----FEGLSNLRYLNLAMCNLRE------IPNLTPL 206
Query: 675 TKLKQINVSENQF 687
KL ++++S N
Sbjct: 207 IKLDELDLSGNHL 219
Score = 34.3 bits (79), Expect = 0.20
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 18/99 (18%)
Query: 592 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTL 649
N R LNL++N I I + + L L IL L +++ GA L
Sbjct: 65 NTRLLNLHENQIQ---IIKVN-SFKHLRHLEILQLSRNHIRTIEIGA------FNGLANL 114
Query: 650 EDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 687
+ L N + ++ G A +KLK++ + N
Sbjct: 115 NTLELFDNRLTTIPNG-----AFVYLSKLKELWLRNNPI 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 50.3 bits (120), Expect = 2e-06
Identities = 31/205 (15%), Positives = 67/205 (32%), Gaps = 23/205 (11%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L + + + +E + L++ C F L L + + L C
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC--- 435
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT--ALSD 585
K+ A + L + G + ++ + + +VG + L +
Sbjct: 436 --KKLRRFAFY---LRQGGLTDLGLSYIGQYSPNVRWML--------LGYVGESDEGLME 482
Query: 586 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 645
NL+ L + + + + A++KLPSL L + G +
Sbjct: 483 FSRGCPNLQKLEMRGCCFSERA---IAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARP- 538
Query: 646 NTTLEDVNLT-CNEISVQGGLDLVK 669
+E + E++ QG + ++
Sbjct: 539 YWNIELIPSRRVPEVNQQGEIREME 563
Score = 47.2 bits (112), Expect = 2e-05
Identities = 31/192 (16%), Positives = 60/192 (31%), Gaps = 37/192 (19%)
Query: 544 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA-----FEENKNLRHLNL 598
RN + + G ++LA K+LK L +S + + L ++ +
Sbjct: 326 RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385
Query: 599 NDNTITYKGAIPLGQALSKLPSLAILNLGDC-----LLKSAGASSIAKY----------- 642
+ IT + +G L L ++ L L G S+
Sbjct: 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445
Query: 643 ----LTDN---------TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689
LTD + + L S +G ++ + N L+++ + F E
Sbjct: 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN---LQKLEMRGCCFSE 502
Query: 690 EGVEEMEKLMKS 701
+ + S
Sbjct: 503 RAIAAAVTKLPS 514
Score = 45.3 bits (107), Expect = 9e-05
Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 6/131 (4%)
Query: 555 LAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND-NTITYKGAIPLGQ 613
+ + L+ L+ V + + + + L+ A +L L L+ + T G L
Sbjct: 104 VTEISNNLRQLKSVHFRRMIVSDLDLDRLAKAR--ADDLETLKLDKCSGFTTDG---LLS 158
Query: 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 673
++ + L + + + + NT+LE +N E + DL +N
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218
Query: 674 KTKLKQINVSE 684
L + V +
Sbjct: 219 CRSLVSVKVGD 229
Score = 37.6 bits (87), Expect = 0.020
Identities = 36/231 (15%), Positives = 73/231 (31%), Gaps = 34/231 (14%)
Query: 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGIT 512
D L + ++ + L + +++F + L +L + +LE L
Sbjct: 154 DGLLSIVTHCRK----IKTLLMEESSFSEKDGKWLHELAQ--HNTSLEVLNFYMTEFAKI 207
Query: 513 GCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 572
K L +C +L ++ + L FK LE
Sbjct: 208 SPKDLETIARNC----------RSLVSV-----KVGDFEILELVGFFKAAANLEEF---- 248
Query: 573 NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK 632
G + + + R L ++Y G + + L+L LL+
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLG--LSYMGPNEMPILFPFAAQIRKLDLLYALLE 306
Query: 633 SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 683
+ ++ + + LE + N I +G L + K LK++ +
Sbjct: 307 TEDHCTLIQKCPN---LEVLET-RNVIGDRGLEVLAQYCKQ---LKRLRIE 350
Score = 34.9 bits (80), Expect = 0.13
Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 5/127 (3%)
Query: 544 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTI 603
R + + LA LE +++ + L + ++ L + +++
Sbjct: 121 RMIVSDLDLDRLAKAR--ADDLETLKL--DKCSGFTTDGLLSIVTHCRKIKTLLMEESSF 176
Query: 604 TYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT-CNEISVQ 662
+ K L + SL +LN + + +L V + + +
Sbjct: 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV 236
Query: 663 GGLDLVK 669
G
Sbjct: 237 GFFKAAA 243
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 49.3 bits (118), Expect = 6e-06
Identities = 31/244 (12%), Positives = 72/244 (29%), Gaps = 36/244 (14%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
TEIP +Q + L + N + + ++ + + + + N
Sbjct: 366 TEIPANF---CGFTEQ----VENLSFAHNKL-----KYIPNIFDAKSVSVMSAIDFSYNE 413
Query: 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 568
+G K + + N++ K +F L +
Sbjct: 414 IGSVDGKNFD-------PLDPTPFKGINVSSINLSNNQIS----KFPKELFSTGSPLSSI 462
Query: 569 EMPQN---GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625
+ N I + ++ F+ L ++L N +T + + LP L ++
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT---KLSDDFRATTLPYLVGID 519
Query: 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL--DLVKAMKNKTKLKQINVS 683
L S +++TL+ + + + + + L Q+ +
Sbjct: 520 LSYNSF-----SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574
Query: 684 ENQF 687
N
Sbjct: 575 SNDI 578
Score = 45.8 bits (109), Expect = 7e-05
Identities = 36/268 (13%), Positives = 81/268 (30%), Gaps = 58/268 (21%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAF--GPIGVEGLADLLRSSCCFALEELKLNN 506
T++P L+ L + ++++ N G + L + ++ + +
Sbjct: 263 TKLPTFLKALPE--------MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314
Query: 507 NGL-------GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVF 559
N L + K L + N+LE F
Sbjct: 315 NNLKTFPVETSLQKMK--------------------KLGMLECLYNQLEG-----KLPAF 349
Query: 560 KKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
L + + N I T + ++ + + +L+ N + Y IP +
Sbjct: 350 GSEIKLASLNLAYNQI-----TEIPANFCGFTEQVENLSFAHNKLKY---IPNIFDAKSV 401
Query: 619 PSLAILNLGDCLLKSAGA---SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 675
++ ++ + S + + +NL+ N+IS + +
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS---KFPK-ELFSTGS 457
Query: 676 KLKQINVSENQFGEEGVEEMEKLMKSFG 703
L IN+ N E ++ ++F
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFK 485
Score = 43.1 bits (102), Expect = 4e-04
Identities = 35/235 (14%), Positives = 72/235 (30%), Gaps = 53/235 (22%)
Query: 469 LVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGLGITG-----CKLLSKALH 522
L L+ N G + ++ L L L N + T C +
Sbjct: 332 LGMLECLYNQLEGKL--PAFGSEIK------LASLNLAYNQI--TEIPANFCGFTEQ--- 378
Query: 523 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVF--KKLKTLERVEMPQN---GIYH 577
++ N+L+ + +F K + + ++ N +
Sbjct: 379 --------------VENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYNEIGSVDG 419
Query: 578 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS---A 634
L + N+ +NL++N I+ + S L+ +NL +L
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQIS--KFPK--ELFSTGSPLSSINLMGNMLTEIPKN 475
Query: 635 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689
+ + L ++L N+++ L L I++S N F +
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLT---KLSDDFRATTLPYLVGIDLSYNSFSK 527
Score = 37.7 bits (88), Expect = 0.020
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 589 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 648
N + L+L + G +P A+ +L L +L LG K K ++ N +
Sbjct: 79 SNGRVTGLSLEGFGAS--GRVP--DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134
Query: 649 LEDVNLTCNEIS 660
E
Sbjct: 135 DEQKQKMRMHYQ 146
Score = 36.9 bits (86), Expect = 0.037
Identities = 34/260 (13%), Positives = 69/260 (26%), Gaps = 60/260 (23%)
Query: 450 EIPDALRYLGNGLQQAGARLVELDLSDNAF-GPIGVEGLADL--LRSSCCFALEELKLNN 506
+PDA+ L L L L + + G + S +
Sbjct: 96 RVPDAIGQLTE--------LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147
Query: 507 NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 566
+ + S + DC S ++ S R L++
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSS-----RITLKDT---------------- 186
Query: 567 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ------------- 613
Q G IT +S A LR + ++ + +
Sbjct: 187 -----QIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241
Query: 614 --ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI----SVQGGLDL 667
L L + + +C + + +L ++ +N+ CN ++
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNL----TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297
Query: 668 VKAMKNKTKLKQINVSENQF 687
+ K++ I + N
Sbjct: 298 LADAPVGEKIQIIYIGYNNL 317
Score = 35.4 bits (82), Expect = 0.12
Identities = 25/189 (13%), Positives = 46/189 (24%), Gaps = 38/189 (20%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRS-SCCFALEELKLNNNGL-----GITGCKLLSKALH 522
L ++L N I L D + + L + L N L L
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY---- 514
Query: 523 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG--I 580
L N TL+ + +
Sbjct: 515 --------------LVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555
Query: 581 TALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 640
+ +L L + N I + P++++L++ D S S +
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIR---KVN----EKITPNISVLDIKDNPNISIDLSYVC 608
Query: 641 KYLTDNTTL 649
Y+ +
Sbjct: 609 PYIEAGMYM 617
Score = 31.2 bits (71), Expect = 2.0
Identities = 22/141 (15%), Positives = 39/141 (27%), Gaps = 13/141 (9%)
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
+L LE + + +G N + +
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ-------KTFVDYD 153
Query: 619 PSLAILNLGDCLLKSA-GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 677
P +L + S SI K + N I+ + KA+ TKL
Sbjct: 154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-----VSKAVMRLTKL 208
Query: 678 KQINVSENQFGEEGVEEMEKL 698
+Q + + F E + E +
Sbjct: 209 RQFYMGNSPFVAENICEAWEN 229
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 48.1 bits (115), Expect = 8e-06
Identities = 45/249 (18%), Positives = 84/249 (33%), Gaps = 49/249 (19%)
Query: 449 TEIPDALRYL---GNGLQQAGA-------RLVELDLSDNAFGPIGVEGLADLLRSSCCFA 498
T IP + L N LQ +L +L LS N G +D +S
Sbjct: 24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS---- 79
Query: 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAV 558
L+ L L+ NG+ +S L+ + L+ +V
Sbjct: 80 LKYLDLSFNGV-----ITMSSNFLGL----------EQLEHLDFQHSNLKQMSE---FSV 121
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
F L+ L +++ + F +L L + N+ + ++L
Sbjct: 122 FLSLRNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSF--QENFLPD-IFTEL 174
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKL 677
+L L+L C L+ ++ ++L+ +N++ N S+ K L
Sbjct: 175 RNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMSHNNFFSLDTF-----PYKCLNSL 225
Query: 678 KQINVSENQ 686
+ ++ S N
Sbjct: 226 QVLDYSLNH 234
Score = 40.8 bits (96), Expect = 0.002
Identities = 31/162 (19%), Positives = 51/162 (31%), Gaps = 32/162 (19%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L+ LD+S L +LE LK+ N L +
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGL------SSLEVLKMAGNSFQEN---FLPDIFTELRN- 176
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L + +LE + F L +L+ + M N + + + +
Sbjct: 177 ---------LTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFFSLD----TFPY 219
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGD 628
+ +L+ L+ + N I L P SLA LNL
Sbjct: 220 KCLNSLQVLDYSLNHIM---TSKKQ-ELQHFPSSLAFLNLTQ 257
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 48.1 bits (115), Expect = 8e-06
Identities = 50/242 (20%), Positives = 79/242 (32%), Gaps = 66/242 (27%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L L L +N I + + L + L++L ++ N L
Sbjct: 79 HLYALVLVNNKISKIHEKAFSPLRK------LQKLYISKNHL-----------------V 115
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
P +L NR+ K+ VF L+ + +EM N + + G AF
Sbjct: 116 EIPPNLPSSLVELRIHDNRIR----KVPKGVFSGLRNMNCIEMGGNPLENSGFE--PGAF 169
Query: 588 ----------EENK----------NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627
E K L L+L+ N I AI L L + L L LG
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ---AIELE-DLLRYSKLYRLGLG 225
Query: 628 DCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEIS-VQGGLDLVKAMKNKTKLKQINVSEN 685
+ I TL +++L N++S V GL + L+ + + N
Sbjct: 226 HNQI-----RMIENGSLSFLPTLRELHLDNNKLSRVPAGL------PDLKLLQVVYLHTN 274
Query: 686 QF 687
Sbjct: 275 NI 276
Score = 46.5 bits (111), Expect = 2e-05
Identities = 27/189 (14%), Positives = 57/189 (30%), Gaps = 39/189 (20%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGIT--------GCKLLSKA 520
LVEL + DN + + L + +++ N L + G KL
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRN------MNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178
Query: 521 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG- 579
+ + + + P L N+++ + + L R+ + N I +
Sbjct: 179 ISEAKLTGIPKDLPETLNELHLDHNKIQ----AIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 580 ------------------ITALSDAFEENKNLRHLNLNDNTITY--KGAIPLGQALSKLP 619
++ + + K L+ + L+ N IT K
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294
Query: 620 SLAILNLGD 628
++L +
Sbjct: 295 YYNGISLFN 303
Score = 39.6 bits (93), Expect = 0.004
Identities = 29/163 (17%), Positives = 49/163 (30%), Gaps = 29/163 (17%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526
L EL L N I +E L L L L +N + + + +L
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRY------SKLYRLGLGHNQIR----MIENGSLSFLP- 241
Query: 527 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD- 585
L+ N+L + A LK L+ V + N I VG+
Sbjct: 242 ---------TLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287
Query: 586 -AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627
+ ++L +N + Y + + + G
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWE-VQPA-TFRCVTDRLAIQFG 328
Score = 39.2 bits (92), Expect = 0.005
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 22/119 (18%)
Query: 580 ITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 638
I+ L D F+ ++L L L +N I+ I A S L L L + L
Sbjct: 66 ISELRKDDFKGLQHLYALVLVNNKISK---IHEK-AFSPLRKLQKLYISKNHLVE----- 116
Query: 639 IAKYLTDNT--TLEDVNLTCNEIS-VQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 694
+ N +L ++ + N I V G + I + N G E
Sbjct: 117 ----IPPNLPSSLVELRIHDNRIRKVPKG-----VFSGLRNMNCIEMGGNPLENSGFEP 166
Score = 31.5 bits (72), Expect = 1.5
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 8/66 (12%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
+ +P L L L + L N +GV + + L NN
Sbjct: 254 SRVPAGLPDLKL--------LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305
Query: 509 LGITGC 514
+
Sbjct: 306 VPYWEV 311
Score = 30.4 bits (69), Expect = 2.7
Identities = 22/136 (16%), Positives = 36/136 (26%), Gaps = 25/136 (18%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
+L L L N I L+ L L EL L+NN L + L D
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLP------TLRELHLDNNKL-----SRVPAGLPDL--- 263
Query: 528 SKKEGSPLALKVFIAGRNRLEN--EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 585
L+V N + K + + N + + +
Sbjct: 264 -------KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP--A 314
Query: 586 AFEENKNLRHLNLNDN 601
F + + +
Sbjct: 315 TFRCVTDRLAIQFGNY 330
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 48.6 bits (116), Expect = 9e-06
Identities = 41/236 (17%), Positives = 87/236 (36%), Gaps = 19/236 (8%)
Query: 455 LRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC 514
+L + + L+L D L SS +++L + L
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS---PMKKLAFRGSVLTDESF 240
Query: 515 KLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 574
L K L E S+ E L +E + + T+ R+ +PQ
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNP---SESDVVSELGKVETVTIRRLHIPQFY 297
Query: 575 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 634
+++ LS + + ++ + + ++ + +P L SL L+L + L+
Sbjct: 298 LFYD----LSTVYSLLEKVKRITVENSKVFL---VPCS-FSQHLKSLEFLDLSENLMVEE 349
Query: 635 GASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQFGE 689
+ + +L+ + L+ N + S+Q +++ +KN L +++S N F
Sbjct: 350 YLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN---LTSLDISRNTFHP 401
Score = 45.5 bits (108), Expect = 7e-05
Identities = 33/220 (15%), Positives = 79/220 (35%), Gaps = 45/220 (20%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
++ + + ++ + L LE L L+ N + K +
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKS------LEFLDLSENLMVEEYLK-----------N 353
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
S +G+ +L+ + +N L + + LK L +++ +N + D+
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQ--KTGEILLTLKNLTSLDISRNTF-----HPMPDSC 406
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
+ + +R LNL+ I + +L +L++ + L S + +L
Sbjct: 407 QWPEKMRFLNLSSTGIR---VVKTCI----PQTLEVLDVSNNNL-----DSFSLFLPR-- 452
Query: 648 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
L+++ ++ N++ + L + +S NQ
Sbjct: 453 -LQELYISRNKLKT------LPDASLFPVLLVMKISRNQL 485
Score = 42.8 bits (101), Expect = 5e-04
Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 16/133 (12%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
+ L+ + + + I + DAF +L HL+L+DN ++ ++
Sbjct: 43 HGDLRACANLQVLILKSSRINTIE----GDAFYSLGSLEHLDLSDNHLS---SLSSS-WF 94
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT-CNEISVQGGLDLVKAMKNK 674
L SL LNL ++ G +S+ L T L+ + + S +D
Sbjct: 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNL---TNLQTLRIGNVETFSEIRRIDF----AGL 147
Query: 675 TKLKQINVSENQF 687
T L ++ +
Sbjct: 148 TSLNELEIKALSL 160
Score = 41.2 bits (97), Expect = 0.001
Identities = 38/295 (12%), Positives = 84/295 (28%), Gaps = 42/295 (14%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L L L + I + L LE L L++N L L S
Sbjct: 51 NLQVLILKSSRINTIEGDAFYSLGS------LEHLDLSDNHLS----SLSSSWFGPLS-- 98
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-DA 586
+LK N + + ++F L L+ + + + +
Sbjct: 99 --------SLKYLNLMGNPYQTL---GVTSLFPNLTNLQTLRIGNVET----FSEIRRID 143
Query: 587 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 646
F +L L + ++ +L + + L L
Sbjct: 144 FAGLTSLNELEIKALSLRN---YQSQ-SLKSIRDIHHLTLHLSESAFLLEIF----ADIL 195
Query: 647 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 706
+++ + L ++ L + + +K++ + +E E+ KL++ +
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVS-SPMKKLAFRGSVLTDESFNELLKLLRYILELS 254
Query: 707 ALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNH-SHNASNQSHNNS 760
+ +D C+ + + E+D +E H +
Sbjct: 255 EVEFDD----CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305
Score = 36.6 bits (85), Expect = 0.044
Identities = 36/203 (17%), Positives = 66/203 (32%), Gaps = 40/203 (19%)
Query: 468 RLVELDLSDNAFGPIGVEGLA-DLLRSSCCFALEELKLNNNGLGI--TGCKLLSKA---- 520
L L LS N + G L++ L L ++ N C+ K
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKN-----LTSLDISRNTFHPMPDSCQWPEKMRFLN 416
Query: 521 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI 580
L K P L+V N L++ L L+ + + +N + +
Sbjct: 417 LSSTGIRVVKTCIPQTLEVLDVSNNNLDS--------FSLFLPRLQELYISRNKLKTLPD 468
Query: 581 TALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG------DCLLKSA 634
+L L + ++ N + +P G +L SL + L C
Sbjct: 469 ASLF------PVLLVMKISRNQLKS---VPDG-IFDRLTSLQKIWLHTNPWDCSCPRIDY 518
Query: 635 GASSIAKYLTDNTTLEDVNLTCN 657
++++L N+ E + C+
Sbjct: 519 ----LSRWLNKNSQKEQGSAKCS 537
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 48.4 bits (116), Expect = 1e-05
Identities = 43/231 (18%), Positives = 76/231 (32%), Gaps = 56/231 (24%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 527
L EL L+ N + LA L L +L L NN + + L+K
Sbjct: 223 LDELSLNGNQL--KDIGTLASLTN------LTDLDLANNQISNLAPLSGLTK-------- 266
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L G N++ N L L +E+ +N + +
Sbjct: 267 ---------LTELKLGANQISNISP------LAGLTALTNLELNENQLEDI------SPI 305
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
KNL +L L N I+ +S L L L + + L + T
Sbjct: 306 SNLKNLTYLTLYFNNISDI------SPVSSLTKLQRLFFYNNKVSDV------SSLANLT 353
Query: 648 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 698
+ ++ N+IS + + N T++ Q+ +++ + V +
Sbjct: 354 NINWLSAGHNQISD------LTPLANLTRITQLGLNDQAWTNAPVNYKANV 398
Score = 46.9 bits (112), Expect = 3e-05
Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 44/236 (18%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSK----ALHDC 524
L L+LS N + L+ L L++L N + L+ +
Sbjct: 136 LNRLELSSNTIS--DISALSGLTS------LQQLSFGNQVTDLKPLANLTTLERLDISSN 187
Query: 525 YESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL 583
S + L L+ IA N++ + L L+ + + N + +
Sbjct: 188 KVSDISVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDI----- 236
Query: 584 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643
NL L+L +N I+ + LS L L L LG + + L
Sbjct: 237 -GTLASLTNLTDLDLANNQIS---NLA---PLSGLTKLTELKLGANQISNISP------L 283
Query: 644 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF-GEEGVEEMEKL 698
T L ++ L N++ + + N L + + N V + KL
Sbjct: 284 AGLTALTNLELNENQLED------ISPISNLKNLTYLTLYFNNISDISPVSSLTKL 333
Score = 46.9 bits (112), Expect = 3e-05
Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 46/239 (19%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSK-AL 521
A ++ L DL + + L+ + G+ G+ L++
Sbjct: 24 AEKMKTVLGKTNV--TDTVSQTDLDQ------VTTLQADRLGIKSIDGVEYLNNLTQINF 75
Query: 522 HDCYESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI 580
+ + L L + N++ + L L + + N I +
Sbjct: 76 SNNQLTDITPLKNLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITDI-- 127
Query: 581 TALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 640
D + NL L L+ NTI+ I ALS L SL L+ G+ +
Sbjct: 128 ----DPLKNLTNLNRLELSSNTISD---IS---ALSGLTSLQQLSFGNQVTDLKP----- 172
Query: 641 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF-GEEGVEEMEKL 698
L + TTLE ++++ N++S + + T L+ + + NQ + + L
Sbjct: 173 --LANLTTLERLDISSNKVSD------ISVLAKLTNLESLIATNNQISDITPLGILTNL 223
Score = 38.8 bits (91), Expect = 0.009
Identities = 39/198 (19%), Positives = 65/198 (32%), Gaps = 36/198 (18%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSK-ALHD 523
L EL L N + LA L L L+LN N L I+ K L+ L+
Sbjct: 267 LTELKLGANQI--SNISPLAGLTA------LTNLELNENQLEDISPISNLKNLTYLTLYF 318
Query: 524 CYESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 582
S S L L+ N++ + + L + + N I +
Sbjct: 319 NNISDISPVSSLTKLQRLFFYNNKVSD------VSSLANLTNINWLSAGHNQISDL---- 368
Query: 583 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 642
+ L LND T ++ +++I N + GA
Sbjct: 369 --TPLANLTRITQLGLNDQAWT-------NAPVNYKANVSIPNT---VKNVTGALIAPAT 416
Query: 643 LTDNTTLEDVNLTCNEIS 660
++D + + ++T N S
Sbjct: 417 ISDGGSYTEPDITWNLPS 434
Score = 35.7 bits (83), Expect = 0.070
Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 24/128 (18%)
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
L + + + + + + + L + I +I + L
Sbjct: 20 DTALAEKMKTVLGKTNVTDT------VSQTDLDQVTTLQADRLGIK---SID---GVEYL 67
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 678
+L +N + L L + T L D+ + N+I+ + + N T L
Sbjct: 68 NNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIAD------ITPLANLTNLT 115
Query: 679 QINVSENQ 686
+ + NQ
Sbjct: 116 GLTLFNNQ 123
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 48.1 bits (115), Expect = 1e-05
Identities = 46/247 (18%), Positives = 88/247 (35%), Gaps = 59/247 (23%)
Query: 455 LRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC 514
+R L L + ++ L+L+D I A +++L + N +
Sbjct: 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT------IQKLYMGFNAIR---- 106
Query: 515 KLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 574
L + L V + RN L + + +F L + M N
Sbjct: 107 YLPPHVFQNV----------PLLTVLVLERNDLSS----LPRGIFHNTPKLTTLSMSNNN 152
Query: 575 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 634
+ + D F+ +L++L L+ N +T + L +PSL N+ LL +
Sbjct: 153 LERIE----DDTFQATTSLQNLQLSSNRLT---HVDLSL----IPSLFHANVSYNLLST- 200
Query: 635 GASSIAKYLTDNTTLEDVNLTCNEIS-VQGG-------LDL-------VKAMKNKTKLKQ 679
L +E+++ + N I+ V+G L L + N L +
Sbjct: 201 --------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVE 252
Query: 680 INVSENQ 686
+++S N+
Sbjct: 253 VDLSYNE 259
Score = 42.7 bits (101), Expect = 4e-04
Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
AA+ + +E + + I + + AF ++ L + N I Y +P
Sbjct: 62 AALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRY---LPPH-VF 113
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 675
+P L +L L L S + L ++++ N + ++ + T
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLER---IE-DDTFQATT 165
Query: 676 KLKQINVSENQF 687
L+ + +S N+
Sbjct: 166 SLQNLQLSSNRL 177
Score = 41.6 bits (98), Expect = 0.001
Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 39/166 (23%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
+ ELD S N+ +++R L LKL +N L T L +
Sbjct: 206 AVEELDASHNSI---------NVVRGPVNVELTILKLQHNNLTDTA------WLLNYP-- 248
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L N LE K++ F K++ LER+ + N + AL+
Sbjct: 249 --------GLVEVDLSYNELE----KIMYHPFVKMQRLERLYISNNRL-----VALNLYG 291
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 633
+ L+ L+L+ N + + + + + L L L + +
Sbjct: 292 QPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVT 332
Score = 36.9 bits (86), Expect = 0.027
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 591 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 650
N + + ++T+ +P L + +LNL D ++ + T++
Sbjct: 45 NNQKIVTFKNSTMRK---LPAA-LLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQ 96
Query: 651 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 686
+ + N I L +N L + + N
Sbjct: 97 KLYMGFNAIRY---LP-PHVFQNVPLLTVLVLERND 128
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 46.0 bits (109), Expect = 1e-05
Identities = 18/143 (12%), Positives = 53/143 (37%), Gaps = 11/143 (7%)
Query: 544 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTI 603
+R+ + G A+ + L+ V + L + ++ ++ D+ I
Sbjct: 15 HDRIRDVGPDRAASEWL-LRCGAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCI 73
Query: 604 TYKGAIPLGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLT-CNEISV 661
G + L + + L C ++ +++ ++ ++ + C ++
Sbjct: 74 MSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129
Query: 662 QGGLDLVKAMKNKTKLKQINVSE 684
+G + A+ + LK + +S+
Sbjct: 130 KG----IIALHHFRNLKYLFLSD 148
Score = 32.9 bits (75), Expect = 0.28
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 579 GITALSDAFEENKNLRHLNLNDNT-ITYKGAIPLGQALSKLPSLAILNLGDC 629
+ LS K++ + + +T KG AL +L L L D
Sbjct: 102 CLERLSQLENLQKSMLEMEIISCGNVTDKGI----IALHHFRNLKYLFLSDL 149
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 47.4 bits (113), Expect = 1e-05
Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 44/237 (18%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALH-DCY 525
+ L I EG+ L L L+L +N + + K L+K +
Sbjct: 42 GITTLSAFGTGVTTI--EGVQYLN------NLIGLELKDNQITDLAPLKNLTKITELELS 93
Query: 526 ESSKKEGSPLA----LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 581
+ K S +A +K ++ + L L+ + + N I ++
Sbjct: 94 GNPLKNVSAIAGLQSIKTLDLTSTQITD------VTPLAGLSNLQVLYLDLNQITNI--- 144
Query: 582 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641
NL++L++ + ++ + L+ L L L D +
Sbjct: 145 ---SPLAGLTNLQYLSIGNAQVS---DLT---PLANLSKLTTLKADDNKISDI------S 189
Query: 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 698
L L +V+L N+IS V + N + L + ++ + V L
Sbjct: 190 PLASLPNLIEVHLKNNQISD------VSPLANTSNLFIVTLTNQTITNQPVFYNNNL 240
Score = 32.7 bits (75), Expect = 0.49
Identities = 44/206 (21%), Positives = 68/206 (33%), Gaps = 40/206 (19%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSKALHDC 524
+ LDL+ V LA L L+ L L+ N + + G L
Sbjct: 109 IKTLDLTSTQI--TDVTPLAGLS------NLQVLYLDLNQITNISPLAGLTNLQYL--SI 158
Query: 525 YESSKKEGSPLA----LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI 580
+ + +PLA L A N++ + L L V + N I V
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDV-- 210
Query: 581 TALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 640
NL + L + TIT Q + +L + N+ + +GA
Sbjct: 211 ----SPLANTSNLFIVTLTNQTIT-------NQPVFYNNNLVVPNV---VKGPSGAPIAP 256
Query: 641 KYLTDNTTLEDVNLTCNEISVQGGLD 666
++DN T NLT N S +
Sbjct: 257 ATISDNGTYASPNLTWNLTSFINNVS 282
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 47.2 bits (112), Expect = 1e-05
Identities = 33/220 (15%), Positives = 67/220 (30%), Gaps = 23/220 (10%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L L + + G +L S L+EL L N + TG
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGIS---GLQELTLENLEV--TGTAPPPLL------- 116
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
E + L + A + L+ + + Q + +
Sbjct: 117 ---EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF----SCEQV 169
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
L L+L+DN + + K P+L +L L + +++ +
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS-GVCSALAAARV 228
Query: 648 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
L+ ++L+ N + + ++L +N+S
Sbjct: 229 QLQGLDLSHNSLR---DAAGAPSCDWPSQLNSLNLSFTGL 265
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 47.6 bits (114), Expect = 2e-05
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 586 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 645
F+ + +L L+L+ N+++ G + +L L LN+ L G S L
Sbjct: 95 GFKCSASLTSLDLSRNSLS--GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-- 150
Query: 646 NTTLEDVNLTCNEISVQGGL-DLVKAMKNKTKLKQINVSENQF 687
+LE ++L+ N IS G +LK + +S N+
Sbjct: 151 -NSLEVLDLSANSIS--GANVVGWVLSDGCGELKHLAISGNKI 190
Score = 44.5 bits (106), Expect = 2e-04
Identities = 41/223 (18%), Positives = 83/223 (37%), Gaps = 45/223 (20%)
Query: 468 RLVELDLSDNAF-GPI-GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCY 525
L LDLS N+ GP+ + L L+ L +++N L G L+
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSG------LKFLNVSSNTLDFPGKVSGGLKLN--- 151
Query: 526 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY-HVGITALS 584
+L+V N + + L+ + + N I V ++
Sbjct: 152 ----------SLEVLDLSANSISGANVVGW-VLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 644
NL L+++ N + IP L +L L++ L + ++ ++
Sbjct: 201 -------NLEFLDVSSNNFS--TGIP---FLGDCSALQHLDISGNKL----SGDFSRAIS 244
Query: 645 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
T L+ +N++ N+ G + + L+ ++++EN+F
Sbjct: 245 TCTELKLLNISSNQFV--GPIPPL----PLKSLQYLSLAENKF 281
Score = 36.8 bits (86), Expect = 0.035
Identities = 52/262 (19%), Positives = 86/262 (32%), Gaps = 64/262 (24%)
Query: 443 FTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEE 501
FTG +IP L LV L LS N G I L L + L +
Sbjct: 406 FTG----KIPPTLSNCSE--------LVSLHLSFNYLSGTIPSS-LGSLSK------LRD 446
Query: 502 LKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK 561
LKL N L G + + L L+ I N L E + +
Sbjct: 447 LKLWLNML--EG--EIPQELMYVKT----------LETLILDFNDLTGE----IPSGLSN 488
Query: 562 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 621
L + + N + G + +NL L L++N+ + G IP L SL
Sbjct: 489 CTNLNWISLSNNRLT--G--EIPKWIGRLENLAILKLSNNSFS--GNIP--AELGDCRSL 540
Query: 622 AILNLGD---------CLLKSAGASS-------IAKYLTDNTTLEDVNLTCNEISVQGGL 665
L+L + K +G + Y+ ++ ++ + N + QG
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600
Query: 666 DLVKAMKNKTKLKQINVSENQF 687
+ + + N++ +
Sbjct: 601 S--EQLNRLSTRNPCNITSRVY 620
Score = 35.7 bits (83), Expect = 0.086
Identities = 46/221 (20%), Positives = 79/221 (35%), Gaps = 39/221 (17%)
Query: 468 RLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526
L LDLS N F G + ++ +L L L++N +G + L +
Sbjct: 344 GLKVLDLSFNEFSGELPES------LTNLSASLLTLDLSSNNF--SG--PILPNLCQNPK 393
Query: 527 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 586
++ L+ N + + L + + N + G + +
Sbjct: 394 NT--------LQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYL--SG--TIPSS 437
Query: 587 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 646
LR L L N + G IP Q L + +L L L L G I L++
Sbjct: 438 LGSLSKLRDLKLWLNMLE--GEIP--QELMYVKTLETLILDFNDLT--G--EIPSGLSNC 489
Query: 647 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
T L ++L+ N ++ G + K + L + +S N F
Sbjct: 490 TNLNWISLSNNRLT--GEIP--KWIGRLENLAILKLSNNSF 526
Score = 33.3 bits (77), Expect = 0.47
Identities = 57/239 (23%), Positives = 86/239 (35%), Gaps = 50/239 (20%)
Query: 468 RLVELDLSDNAF-GPI-----GVEGLADLLRSSCCF-------------ALEELKLNNNG 508
L LDLS N F G + L L SS F L+ L L+ N
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 568
+G L ++L + S L N G + TL+ +
Sbjct: 355 F--SG--ELPESLTNLSAS---------LLTLDLSSNNF--SGPILPNLCQNPKNTLQEL 399
Query: 569 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628
+ NG G + L L+L+ N ++ G IP +L L L L L
Sbjct: 400 YLQNNGF--TGK--IPPTLSNCSELVSLHLSFNYLS--GTIP--SSLGSLSKLRDLKLWL 451
Query: 629 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
+L+ G I + L TLE + L N+++ G + + N T L I++S N+
Sbjct: 452 NMLE--G--EIPQELMYVKTLETLILDFNDLT--GEIP--SGLSNCTNLNWISLSNNRL 502
Score = 32.6 bits (75), Expect = 0.77
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 591 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 650
K+L++L+L +N T G IP +L L+L ++ + + LE
Sbjct: 269 KSLQYLSLAENKFT--GEIP-DFLSGACDTLTGLDLSGNHF----YGAVPPFFGSCSLLE 321
Query: 651 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
+ L+ N S G + + LK +++S N+F
Sbjct: 322 SLALSSNNFS---GELPMDTLLKMRGLKVLDLSFNEF 355
Score = 31.8 bits (73), Expect = 1.5
Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 49/240 (20%)
Query: 450 EIPDALRYLGNGLQQAGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNG 508
+ A+ L L++S N F GPI +L+ L L N
Sbjct: 238 DFSRAISTCTE--------LKLLNISSNQFVGPIP---------PLPLKSLQYLSLAENK 280
Query: 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 568
TG + L G+ L N + F LE +
Sbjct: 281 F--TG--EIPDFL---------SGACDTLTGLDLSGNHFYGA----VPPFFGSCSLLESL 323
Query: 569 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL-PSLAILNLG 627
+ N G D + + L+ L+L+ N + G +P ++L+ L SL L+L
Sbjct: 324 ALSSNNF--SG-ELPMDTLLKMRGLKVLDLSFNEFS--GELP--ESLTNLSASLLTLDLS 376
Query: 628 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
++ + TL+++ L N + G + + N ++L +++S N
Sbjct: 377 SNNFSGPILPNLCQNP--KNTLQELYLQNNGFT--GKIP--PTLSNCSELVSLHLSFNYL 430
Score = 31.0 bits (71), Expect = 2.6
Identities = 55/251 (21%), Positives = 79/251 (31%), Gaps = 68/251 (27%)
Query: 443 FTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEE 501
TG EIP + L N L L LS+N+F G I E L D C +L
Sbjct: 502 LTG----EIPKWIGRLEN--------LAILKLSNNSFSGNIPAE-LGD------CRSLIW 542
Query: 502 LKLNNNGL------GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKML 555
L LN N + A + + K N LE +G +
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG--IR 600
Query: 556 AAVFKKLKTLERVEMPQN---GIYHVGITALS-----------------DAFEENKNLRH 595
+ +L T + G L
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660
Query: 596 LNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS------IAKYLTDNTTL 649
LNL N I+ G+IP + L L IL+L SS I + ++ T L
Sbjct: 661 LNLGHNDIS--GSIP--DEVGDLRGLNILDL----------SSNKLDGRIPQAMSALTML 706
Query: 650 EDVNLTCNEIS 660
+++L+ N +S
Sbjct: 707 TEIDLSNNNLS 717
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 46.8 bits (111), Expect = 2e-05
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 15/106 (14%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616
F + L +++ N + L F + + L L L +N I + A
Sbjct: 83 AFVPVPNLRYLDLSSNHL-----HTLDEFLFSDLQALEVLLLYNNHIV---VVDRN-AFE 133
Query: 617 KLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEIS 660
+ L L L + L L ++L+ N++
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKL---PKLMLLDLSSNKLK 176
Score = 45.6 bits (108), Expect = 5e-05
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617
+L L + + N + + S+AF NLR+L+L+ N + + S
Sbjct: 59 TPTRLTNLHSLLLSHNHLNFIS----SEAFVPVPNLRYLDLSSNHLH---TLDEF-LFSD 110
Query: 618 LPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEI-SVQGGLDLVKAMKNKT 675
L +L +L L + + + + ++ L+ + L+ N+I L+K
Sbjct: 111 LQALEVLLLYNNHI-----VVVDRNAFEDMAQLQKLYLSQNQISRFPVE--LIKDGNKLP 163
Query: 676 KLKQINVSENQF 687
KL +++S N+
Sbjct: 164 KLMLLDLSSNKL 175
Score = 35.6 bits (82), Expect = 0.080
Identities = 42/220 (19%), Positives = 68/220 (30%), Gaps = 72/220 (32%)
Query: 455 LRYL---GNGLQ--QAGA-----RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKL 504
L L N L + A L LDLS N + +DL LE L L
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA------LEVLLL 119
Query: 505 NNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKT 564
NN + ++ F+ +
Sbjct: 120 YNNHI-----------------------------------VVVDRN-------AFEDMAQ 137
Query: 565 LERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624
L+++ + QN I + + D + L L+L+ N + +PL L KLP+
Sbjct: 138 LQKLYLSQNQISRFPVELIKD-GNKLPKLMLLDLSSNKLKK---LPLT-DLQKLPAWVKN 192
Query: 625 NLG--------DCLLKSAGASSIAKYLTDNTTLEDVNLTC 656
L DC L + + L+ ++ +L C
Sbjct: 193 GLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQE-DLYC 231
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 46.5 bits (111), Expect = 2e-05
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614
+ F L+ +++ + I + A++ +L L L N I ++ LG A
Sbjct: 45 SYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQ---SLALG-A 95
Query: 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKN 673
S L SL L + L +S+ + + TL+++N+ N I L + N
Sbjct: 96 FSGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNLIQS---FKLPEYFSN 147
Query: 674 KTKLKQINVSENQ 686
T L+ +++S N+
Sbjct: 148 LTNLEHLDLSSNK 160
Score = 38.0 bits (89), Expect = 0.011
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617
LKTL+ + + N I L + F NL HL+L+ N I +I L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQ---SIYCT-DLRV 171
Query: 618 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTK 676
L + +LNL L + I L+++ L N++ SV G T
Sbjct: 172 LHQMPLLNL-SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG-----IFDRLTS 225
Query: 677 LKQINVSEN 685
L++I + N
Sbjct: 226 LQKIWLHTN 234
Score = 29.6 bits (67), Expect = 4.3
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 592 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTL 649
+ ++L+L+ N + + + + P L +L+L C +++ GA + L
Sbjct: 29 STKNLDLSFNPLRH---LGSY-SFFSFPELQVLDLSRCEIQTIEDGA------YQSLSHL 78
Query: 650 EDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 686
+ LT N I S+ G A + L+++ E
Sbjct: 79 STLILTGNPIQSLALG-----AFSGLSSLQKLVAVETN 111
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 46.8 bits (111), Expect = 3e-05
Identities = 43/235 (18%), Positives = 83/235 (35%), Gaps = 59/235 (25%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
++ L+L+D I A +++L + N + L +
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHT------IQKLYMGFNAIR----YLPPHVFQNVP-- 123
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L V + RN L + + +F L + M N + + D F
Sbjct: 124 --------LLTVLVLERNDLSS----LPRGIFHNTPKLTTLSMSNNNLERIE----DDTF 167
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
+ +L++L L+ N +T + L +PSL N+ LL + L
Sbjct: 168 QATTSLQNLQLSSNRLT---HVDLSL----IPSLFHANVSYNLLST---------LAIPI 211
Query: 648 TLEDVNLTCNEIS-VQGG-------LDL-------VKAMKNKTKLKQINVSENQF 687
+E+++ + N I+ V+G L L + N L ++++S N+
Sbjct: 212 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 266
Score = 42.2 bits (99), Expect = 8e-04
Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 16/131 (12%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
AA+ + +E + + I + + AF ++ L + N I Y +P
Sbjct: 68 AALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRY---LP-PHVF 119
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 675
+P L +L L L S + L ++++ N + ++ + T
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLER---IE-DDTFQATT 171
Query: 676 KLKQINVSENQ 686
L+ + +S N+
Sbjct: 172 SLQNLQLSSNR 182
Score = 40.3 bits (94), Expect = 0.003
Identities = 48/422 (11%), Positives = 114/422 (27%), Gaps = 52/422 (12%)
Query: 455 LRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG-ITG 513
L + + QA L L LS N + + + L ++ N L +
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL---------FHANVSYNLLSTLAI 209
Query: 514 CKLLSK-ALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 572
+ + + + + L + N L + L V++
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW------LLNYPGLVEVDLSY 263
Query: 573 NGIYHV-------------------GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613
N + + + AL+ + L+ L+L+ N + + + +
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-----VER 318
Query: 614 ALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKA 670
+ L L L + + K L TL + CN + ++ +
Sbjct: 319 NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL----TLSHNDWDCNSLRALFRNVARPAV 374
Query: 671 MKNKTKLKQINVSENQFG-EEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEE 729
K E+ +E + + + ++V + + D + +
Sbjct: 375 DDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQ 434
Query: 730 NDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHSVSQLKQHSVTDFLAAPS 789
+ S + + N+ Q N Q + Q + L
Sbjct: 435 SLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494
Query: 790 VSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSPSSSLFECTK 849
+ + L+++ + ++R + + + + K
Sbjct: 495 LPKDGLARSSDN---LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551
Query: 850 VL 851
L
Sbjct: 552 QL 553
Score = 35.3 bits (81), Expect = 0.13
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 591 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 650
N + + ++T+ +P L + +LNL D ++ + T++
Sbjct: 51 NNQKIVTFKNSTMR---KLPAA-LLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQ 102
Query: 651 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 686
+ + N I L +N L + + N
Sbjct: 103 KLYMGFNAIRY---LP-PHVFQNVPLLTVLVLERND 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 45.9 bits (108), Expect = 6e-05
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 636
H +T L E+ + HL+L+ N + L AL+ L L +L D L+
Sbjct: 450 HKDLTVLCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALE---- 499
Query: 637 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
++ + + L+++ L N + ++ + + +L +N+ N
Sbjct: 500 -NVDG-VANLPRLQELLLCNNRLQ---QSAAIQPLVSCPRLVLLNLQGNSL 545
Score = 43.2 bits (101), Expect = 4e-04
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
++L + +++ N + AL A + L L +DN + + ++ L
Sbjct: 459 LEQLLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNALE---NVD---GVANL 507
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 660
P L L L + L+ S+ + L L +NL N +
Sbjct: 508 PRLQELLLCNNRLQQ---SAAIQPLVSCPRLVLLNLQGNSLC 546
Score = 29.0 bits (64), Expect = 9.7
Identities = 34/200 (17%), Positives = 55/200 (27%), Gaps = 37/200 (18%)
Query: 367 ISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIAD 426
+E L+ LD K + + +K + + +
Sbjct: 375 QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENS 434
Query: 427 ALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEG 486
L R L + T + L L + LDLS N +
Sbjct: 435 VLKMEYADVRVLH---LAHKDLTVLCH-LEQLLL--------VTHLDLSHNRLRALP-PA 481
Query: 487 LADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545
LA L LE L+ ++N L + G L + L+ + N
Sbjct: 482 LAALRC------LEVLQASDNALENVDGVANLPR-----------------LQELLLCNN 518
Query: 546 RLENEGAKMLAAVFKKLKTL 565
RL+ A +L L
Sbjct: 519 RLQQSAAIQPLVSCPRLVLL 538
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 45.1 bits (107), Expect = 7e-05
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 23/132 (17%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617
V L L +++ N + +L + L L+++ N +T ++PLG AL
Sbjct: 72 VDGTLPVLGTLDLSHNQL-----QSLPLLGQTLPALTVLDVSFNRLT---SLPLG-ALRG 122
Query: 618 LPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNK 674
L L L L LK+ G LT LE ++L N + + G +
Sbjct: 123 LGELQELYLKGNELKTLPPGL------LTPTPKLEKLSLANNNLTELPAG-----LLNGL 171
Query: 675 TKLKQINVSENQ 686
L + + EN
Sbjct: 172 ENLDTLLLQENS 183
Score = 33.5 bits (77), Expect = 0.29
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 580 ITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 638
+ S L LNL+ +T + LP L L+L L S
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELT---KLQ---VDGTLPVLGTLDLSHNQL-----QS 91
Query: 639 IAKYLTDNTTLEDVNLTCNEIS 660
+ L ++++ N ++
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLT 113
Score = 32.8 bits (75), Expect = 0.49
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 592 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 651
+ L+L++N + L L L LNL L L
Sbjct: 32 DTTILHLSENLLY---TFSLA-TLMPYTRLTQLNLDRAELTKLQVDG------TLPVLGT 81
Query: 652 VNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 686
++L+ N++ S+ L ++VS N+
Sbjct: 82 LDLSHNQLQSLPLLGQ------TLPALTVLDVSFNR 111
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 44.0 bits (104), Expect = 2e-04
Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
+ ++ L+ + + NGI + D+F +L HL+L+ N ++ +
Sbjct: 69 NSDLQRCVNLQALVLTSNGINTIE----EDSFSSLGSLEHLDLSYNYLS---NLSSS-WF 120
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI--SVQGGLDLVKAMKN 673
L SL LNL K+ G +S+ +L T L+ + + + +Q
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHL---TKLQILRVGNMDTFTKIQRK-----DFAG 172
Query: 674 KTKLKQINVSENQF 687
T L+++ + +
Sbjct: 173 LTFLEELEIDASDL 186
Score = 40.9 bits (96), Expect = 0.001
Identities = 28/190 (14%), Positives = 58/190 (30%), Gaps = 47/190 (24%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCF--------------------ALEELKLNNN 507
L L+L N + +G L L LEEL+++ +
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184
Query: 508 GLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLER 567
L K+L + I + +L ++E
Sbjct: 185 DL----QSYEPKSLKSIQ----------NVSHLILHMKQH----ILLLEIFVDVTSSVEC 226
Query: 568 VEMPQNGIYHVGITALS----DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 623
+E+ + + LS ++ + R++ + D ++ + + L+++ L
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-----VMKLLNQISGLLE 281
Query: 624 LNLGDCLLKS 633
L LKS
Sbjct: 282 LEFSRNQLKS 291
Score = 40.5 bits (95), Expect = 0.002
Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 33/165 (20%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L EL++ + + L + + L L+ LL + D S
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSI------QNVSHLILHMKQH-----ILLLEIFVDVTSS 223
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAV----FKKLKTLERVEMPQNGIYHVGITAL 583
++ L+ L+ K T V++ + +
Sbjct: 224 ---------VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-----FQV 269
Query: 584 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628
+ L L + N + ++P G +L SL + L
Sbjct: 270 MKLLNQISGLLELEFSRNQLK---SVPDG-IFDRLTSLQKIWLHT 310
Score = 39.7 bits (93), Expect = 0.003
Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 24/135 (17%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616
F L +LE +++ N + + L S F+ +L LNL N + S
Sbjct: 95 SFSSLGSLEHLDLSYNYL-----SNLSSSWFKPLSSLTFLNLLGNPYK---TLGETSLFS 146
Query: 617 KLPSLAILNLGDC-LLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMK 672
L L IL +G+ T LE++ + +++ S + ++K
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKD------FAGLTFLEELEIDASDLQSYEPK-----SLK 195
Query: 673 NKTKLKQINVSENQF 687
+ + + + Q
Sbjct: 196 SIQNVSHLILHMKQH 210
Score = 32.0 bits (73), Expect = 0.95
Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 592 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTL 649
++ L+L++N IT I L + +L L L + + + + +L
Sbjct: 53 AVKSLDLSNNRIT---YISNS-DLQRCVNLQALVLTSNGINTIEEDS------FSSLGSL 102
Query: 650 EDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 687
E ++L+ N + ++ K + L +N+ N +
Sbjct: 103 EHLDLSYNYLSNLSSS-----WFKPLSSLTFLNLLGNPY 136
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 42.6 bits (101), Expect = 2e-04
Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 20/141 (14%)
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
+ ++ + + + + NL L + +T LS L
Sbjct: 62 IEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKI----PNLSGL 111
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 678
SL +L++ + + I + ++L+ N G + + +K +LK
Sbjct: 112 TSLTLLDISHSAHDDSILTKINT----LPKVNSIDLSYN-----GAITDIMPLKTLPELK 162
Query: 679 QINVSENQFGE-EGVEEMEKL 698
+N+ + + G+E+ KL
Sbjct: 163 SLNIQFDGVHDYRGIEDFPKL 183
Score = 40.3 bits (95), Expect = 0.001
Identities = 12/139 (8%), Positives = 47/139 (33%), Gaps = 23/139 (16%)
Query: 560 KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLP 619
K + Q+ ++ + +L ++ L + +T + +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQM-------NSLTYITLANINVT---DL---TGIEYAH 66
Query: 620 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 679
++ L + + + ++ + LE + + +++ + + T L
Sbjct: 67 NIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDK----IPNLSGLTSLTL 116
Query: 680 INVSENQFGEEGVEEMEKL 698
+++S + + + ++ L
Sbjct: 117 LDISHSAHDDSILTKINTL 135
Score = 36.1 bits (84), Expect = 0.027
Identities = 21/189 (11%), Positives = 51/189 (26%), Gaps = 48/189 (25%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSKALH 522
+ L ++ I + L + L N + GI + K L
Sbjct: 23 KAYLNGLLGQSSTANITEAQMNSL---------TYITLANINVTDLTGIEYAHNI-KDL- 71
Query: 523 DCYESSKKEGSPLA----LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 578
+P++ L+ + ++ L+ L +L +++ +
Sbjct: 72 TINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLS----GLTSLTLLDISHSAHDDS 127
Query: 579 GITALS-------------------DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLP 619
+T ++ + L+ LN+ + + + + P
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD------YRGIEDFP 181
Query: 620 SLAILNLGD 628
L L
Sbjct: 182 KLNQLYAFS 190
Score = 29.5 bits (67), Expect = 3.6
Identities = 15/138 (10%), Positives = 40/138 (28%), Gaps = 35/138 (25%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS--KALHDCYE 526
L L + + L+ L +L L ++++ + ++ ++
Sbjct: 90 LERLRIMGKDVTSDKIPNLSGLT------SLTLLDISHSAHDDSILTKINTLPKVN---- 139
Query: 527 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 586
+ ++ + + K L L+ + + +G++
Sbjct: 140 -----------SIDLSYNGAITD------IMPLKTLPELKSLNIQFDGVHDY------RG 176
Query: 587 FEENKNLRHLNLNDNTIT 604
E+ L L TI
Sbjct: 177 IEDFPKLNQLYAFSQTIG 194
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 42.7 bits (101), Expect = 4e-04
Identities = 44/219 (20%), Positives = 73/219 (33%), Gaps = 53/219 (24%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 527
+ ELDLS N I LA + LE L L++N L + LS
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTK------LELLNLSSNVLYETLDLESLST-------- 81
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L+ N ++ ++E + N I V +
Sbjct: 82 ---------LRTLDLNNNYVQE---------LLVGPSIETLHAANNNISRVSCSRG---- 119
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
+ +++ L +N IT + + L+L + + + +A
Sbjct: 120 ---QGKKNIYLANNKIT---MLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASS---D 169
Query: 648 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 686
TLE +NL N I VK KLK +++S N+
Sbjct: 170 TLEHLNLQYNFIYD------VKGQVVFAKLKTLDLSSNK 202
Score = 41.1 bits (97), Expect = 0.001
Identities = 16/108 (14%), Positives = 42/108 (38%), Gaps = 14/108 (12%)
Query: 582 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641
A+ + + + + D+++ ++ L+L L A+ +A
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLK---QAL-ASLRQSAWNVKELDLSGNPLSQISAADLAP 56
Query: 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689
+ T LE +NL+ N + +++ + L+ ++++ N E
Sbjct: 57 F----TKLELLNLSSNVLYE------TLDLESLSTLRTLDLNNNYVQE 94
Score = 40.7 bits (96), Expect = 0.001
Identities = 31/203 (15%), Positives = 58/203 (28%), Gaps = 39/203 (19%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYE 526
R+ LDL N + LA + LE L L N + + G + +K
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDT-----LEHLNLQYNFIYDVKGQVVFAK------- 192
Query: 527 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 586
LK N+L + F+ + + + N + + A
Sbjct: 193 ----------LKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKL-----VLIEKA 232
Query: 587 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 646
++NL H +L N ++ ++A + + T
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL------TGQNEEECTVP 286
Query: 647 TTLEDVNLTCNEISVQGGLDLVK 669
T C ++ L+
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIA 309
Score = 37.7 bits (88), Expect = 0.014
Identities = 34/233 (14%), Positives = 67/233 (28%), Gaps = 61/233 (26%)
Query: 449 TEIPD-----ALRYL---GNGLQ--QAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFA 498
E D LR L N +Q G + L ++N +
Sbjct: 71 YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ---------G 121
Query: 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAV 558
+ + L NN + + EG ++ N ++ A +
Sbjct: 122 KKNIYLANNKITML--------------RDLDEGCRSRVQYLDLKLNEIDTV---NFAEL 164
Query: 559 FKKLKTLERVEMPQNGIYHV-----------------GITALSDAFEENKNLRHLNLNDN 601
TLE + + N IY V + + F+ + ++L +N
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224
Query: 602 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNL 654
+ I +AL +L +L ++ + + N ++ V
Sbjct: 225 KLVL---IE--KALRFSQNLEHFDLRGNGFHC---GTLRDFFSKNQRVQTVAK 269
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 41.8 bits (98), Expect = 0.001
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617
L LE + + N + ++ +++ + K+L+ L+++ N+++Y S
Sbjct: 343 NCGHLTELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNSVSY---DEKKGDCSW 397
Query: 618 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 677
SL LN+ +L +I + L ++ ++L N+I + K + L
Sbjct: 398 TKSLLSLNMSSNILT----DTIFRCLPPR--IKVLDLHSNKIKS-----IPKQVVKLEAL 446
Query: 678 KQINVSENQ 686
+++NV+ NQ
Sbjct: 447 QELNVASNQ 455
Score = 37.9 bits (88), Expect = 0.016
Identities = 19/140 (13%), Positives = 44/140 (31%), Gaps = 18/140 (12%)
Query: 552 AKMLAAVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIP 610
+++ + L L + + N I L F+ N+ L +L+L+ N + I
Sbjct: 34 SELWTSDILSLSKLRILIISHNRI-----QYLDISVFKFNQELEYLDLSHNKLV---KIS 85
Query: 611 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS--VQGGLDLV 668
+L L+L + ++ L+ + L+ + + +
Sbjct: 86 CH----PTVNLKHLDLSFNAFDALPICKEFGNMSQ---LKFLGLSTTHLEKSSVLPIAHL 138
Query: 669 KAMKNKTKLKQINVSENQFG 688
K L + +
Sbjct: 139 NISKVLLVLGETYGEKEDPE 158
Score = 36.0 bits (83), Expect = 0.065
Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 17/132 (12%)
Query: 558 VFKKLK--TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
+++ ++ + + H+ + HL+ ++N +T
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHML------CPSKISPFLHLDFSNNLLT---DTVFE-NC 344
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 675
L L L L LK S IA+ T +L+ ++++ N +S
Sbjct: 345 GHLTELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT---K 399
Query: 676 KLKQINVSENQF 687
L +N+S N
Sbjct: 400 SLLSLNMSSNIL 411
Score = 31.8 bits (72), Expect = 1.3
Identities = 39/236 (16%), Positives = 76/236 (32%), Gaps = 20/236 (8%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS-----KALHD 523
L LDLS NAF + + + L+ L L+ L + ++ K L
Sbjct: 92 LKHLDLSFNAFDALPICKEFGNMSQ-----LKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146
Query: 524 CYESSKKEGSPLALKVFIAGRNRL----ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG 579
E+ ++ P L+ F + E +L K + LE + +
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206
Query: 580 ITALSDAFEENKN--LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 637
LS + N L +L LN+ T+ I + Q + ++ ++ + L+
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW-HTTVWYFSISNVKLQGQLDF 265
Query: 638 SIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 692
Y + L + + + + + +K VS +
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319
Score = 31.8 bits (72), Expect = 1.5
Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 44/179 (24%)
Query: 472 LDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKE 531
+S + S L +NN L + + E
Sbjct: 307 FTVSGTRMVHMLC--------PSKISPFLHLDFSNNLLT----DTVFENCGHLTE----- 349
Query: 532 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENK 591
L+ I N+L+ +A + ++K+L+++++ QN + + K
Sbjct: 350 -----LETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNSVSYDEK---KGDCSWTK 399
Query: 592 NLRHLNLNDNTITY--KGAIP---------------LGQALSKLPSLAILNLGDCLLKS 633
+L LN++ N +T +P + + + KL +L LN+ LKS
Sbjct: 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS 458
Score = 29.8 bits (67), Expect = 4.9
Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 42/165 (25%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFA----LEELKLNNNGLGITGCKLLSKALHDC 524
L L L N L +L + + L++L ++ N +
Sbjct: 350 LETLILQMN--------QLKELSKIAEMTTQMKSLQQLDISQNSVSYD------------ 389
Query: 525 YESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGITAL 583
E +L N L + +F+ L ++ +++ N I ++
Sbjct: 390 -EKKGDCSWTKSLLSLNMSSNILTD-------TIFRCLPPRIKVLDLHSNKI-----KSI 436
Query: 584 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628
+ + L+ LN+ N + +P G +L SL + L
Sbjct: 437 PKQVVKLEALQELNVASNQLKS---VPDG-IFDRLTSLQKIWLHT 477
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 39.7 bits (93), Expect = 0.001
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 636
+VG+T++++ + L+ L L+DN ++ L K P+L LNL +K
Sbjct: 51 NVGLTSIAN-LPKLNKLKKLELSDNRVSG----GLEVLAEKCPNLTHLNLSGNKIKDL-- 103
Query: 637 SSIAKYLTDNTTLEDVNLTCNEIS 660
S + L L+ ++L E++
Sbjct: 104 -STIEPLKKLENLKSLDLFNCEVT 126
Score = 38.5 bits (90), Expect = 0.003
Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 18/127 (14%)
Query: 560 KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLP 619
+ ++ + + + + L+D F + L L+ + +T +I L KL
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEF---EELEFLSTINVGLT---SI---ANLPKLN 64
Query: 620 SLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 678
L L L D + S + L + L +NL+ N+I ++ +K ++N LK
Sbjct: 65 KLKKLELSDNRV-----SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN---LK 116
Query: 679 QINVSEN 685
+++
Sbjct: 117 SLDLFNC 123
Score = 35.0 bits (81), Expect = 0.045
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 26/139 (18%)
Query: 491 LRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENE 550
LR+ ++EL L+N+ + L+ + L+ L +
Sbjct: 11 LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEE-------------LEFLSTINVGLTS- 56
Query: 551 GAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP 610
A KL L+++E+ N + L E+ NL HLNL+ N I I
Sbjct: 57 -----IANLPKLNKLKKLELSDNRVSGG----LEVLAEKCPNLTHLNLSGNKIKDLSTI- 106
Query: 611 LGQALSKLPSLAILNLGDC 629
+ L KL +L L+L +C
Sbjct: 107 --EPLKKLENLKSLDLFNC 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 41.0 bits (96), Expect = 0.001
Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 578 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL-LKSAGA 636
+ ++ L + L++L+L ++ L+K +L LNL C
Sbjct: 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIV----NTLAKNSNLVRLNLSGCSGFSEFAL 160
Query: 637 SSIAKYLTDNTTLEDVNLT-CNEISVQGGLDLVKAMKNKTKLKQINVS 683
++ + L+++NL+ C + + + V + Q+N+S
Sbjct: 161 QTLLSSCSR---LDELNLSWCFDFTEKHVQVAVA--HVSETITQLNLS 203
Score = 39.9 bits (93), Expect = 0.004
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 590 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 649
++H++L+++ I L LS+ L L+L L +++AK N+ L
Sbjct: 92 PFRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNL 144
Query: 650 EDVNLT-CNEISVQGGLDLVKAMKNKTKLKQINVS 683
+NL+ C+ S L+ + L ++N+S
Sbjct: 145 VRLNLSGCSGFSEFALQTLLSSCSR---LDELNLS 176
Score = 36.4 bits (84), Expect = 0.041
Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 39/221 (17%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
R+ +DLS++ + G+ S C L+ L L L L+K
Sbjct: 94 RVQHMDLSNSVIEVSTLHGIL-----SQCSKLQNLSLEGLRLSDPIVNTLAK-------- 140
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
+ +++ ++G + + L + +L L + + + A
Sbjct: 141 -----NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN-----LSWCFDFTEKHVQVAV 190
Query: 588 EEN-KNLRHLNLND--NTITYKGAIPLGQALSKLPSLAILNLGDC-LLKSAGASSIAKYL 643
+ + LNL+ + L + + P+L L+L D +LK+ +
Sbjct: 191 AHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL- 246
Query: 644 TDNTTLEDVNLT-CNEISVQGGLDLVKAMKNKTKLKQINVS 683
L+ ++L+ C +I + + + LK + V
Sbjct: 247 ---NYLQHLSLSRCYDIIPET----LLELGEIPTLKTLQVF 280
Score = 33.3 bits (76), Expect = 0.37
Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 28/166 (16%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
LV L+LS + L L S C L+EL L+ C + +
Sbjct: 143 NLVRLNLSGCSG--FSEFALQTL--LSSCSRLDELNLS-------WCFDFT---EKHVQV 188
Query: 528 SKKEGSPLALKVFIAG-RNRLENEGAKMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSD 585
+ S ++ ++G R L+ L+ + ++ L +++ + +
Sbjct: 189 AVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245
Query: 586 AFEENKNLRHLNLNDNT-ITYKGAIPLGQALSKLPSLAILNLGDCL 630
L+HL+L+ I + L ++P+L L + +
Sbjct: 246 L----NYLQHLSLSRCYDIIPETL----LELGEIPTLKTLQVFGIV 283
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 41.3 bits (97), Expect = 0.001
Identities = 43/226 (19%), Positives = 76/226 (33%), Gaps = 27/226 (11%)
Query: 466 GARLVELDLSDNAFGPIGVEGLADLLRSS--CCFALEELKLNNNGLGITGCKLLSKALHD 523
G L LS + L + ++ L L+ NG + ++K D
Sbjct: 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK----ESMAKRFFD 234
Query: 524 CYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKT--LERVEMPQNGIYHVGIT 581
+K + L+ + G + FK L+ ++ ++ ++ I+ +
Sbjct: 235 AIAGTKIQSLILSN-SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL-- 291
Query: 582 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641
F +L L L N I I A L L LNL L S +
Sbjct: 292 --KSVFSHFTDLEQLTLAQNEIN---KIDDN-AFWGLTHLLKLNLSQNFLGSIDSRMFEN 345
Query: 642 YLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 686
L LE ++L+ N I ++ + LK++ + NQ
Sbjct: 346 -L---DKLEVLDLSYNHIRALGDQ-----SFLGLPNLKELALDTNQ 382
Score = 40.1 bits (94), Expect = 0.003
Identities = 36/227 (15%), Positives = 70/227 (30%), Gaps = 34/227 (14%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526
A + +DLS N+ + + L L+ LK+ G+ + +
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQ------DLQFLKVEQQTPGLV---IRNNTFRGLSS 80
Query: 527 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 586
L + N+ + F L LE + + Q + ++ +
Sbjct: 81 ----------LIILKLDYNQFLQ----LETGAFNGLANLEVLTLTQCNLDGAVLSG--NF 124
Query: 587 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 646
F+ +L L L DN I I + +L+L +KS +
Sbjct: 125 FKPLTSLEMLVLRDNNIKK---IQPASFFLNMRRFHVLDLTFNKVKSICEEDL--LNFQG 179
Query: 647 TTLEDVNLTCNEIS----VQGGLDLVKAMKNKTKLKQINVSENQFGE 689
+ L+ + G + T + +++S N F E
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226
Score = 39.0 bits (91), Expect = 0.007
Identities = 42/248 (16%), Positives = 83/248 (33%), Gaps = 36/248 (14%)
Query: 383 QGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDM 442
++ + + +L+L GN + AK DA++ + ++L
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK--IQSLILSN 248
Query: 443 FTGRMKTEIPDALRYLGNGLQQ--AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALE 500
+ + N + + + DLS + + + LE
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD------LE 302
Query: 501 ELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK 560
+L L N + K+ A L +N L + + + +F+
Sbjct: 303 QLTLAQNEIN----KIDDNAFWGLTH----------LLKLNLSQNFLGS----IDSRMFE 344
Query: 561 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS 620
L LE +++ N I +G +F NL+ L L+ N + ++P G +L S
Sbjct: 345 NLDKLEVLDLSYNHIRALG----DQSFLGLPNLKELALDTNQLK---SVPDG-IFDRLTS 396
Query: 621 LAILNLGD 628
L + L
Sbjct: 397 LQKIWLHT 404
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 40.1 bits (94), Expect = 0.001
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 561 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS 620
E+VE+ I + K +HL L+ N I I +LS + +
Sbjct: 21 VATEAEKVELHGM---IPPIEKMDATLSTLKACKHLALSTNNIE---KI---SSLSGMEN 71
Query: 621 LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 680
L IL+LG L+K I TLE++ ++ N+I+ G++ L+ +
Sbjct: 72 LRILSLGRNLIK-----KIENLDAVADTLEELWISYNQIASLSGIE------KLVNLRVL 120
Query: 681 NVSENQFGEEGVEEMEKL 698
+S N+ E++KL
Sbjct: 121 YMSNNKITN--WGEIDKL 136
Score = 33.5 bits (77), Expect = 0.23
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 580 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 639
I + + L L ++ N I ++ + KL +L +L + + + +
Sbjct: 82 IKKIENLDAVADTLEELWISYNQIA---SL---SGIEKLVNLRVLYMSNNKITNW---GE 132
Query: 640 AKYLTDNTTLEDVNLTCNEIS 660
L LED+ L N +
Sbjct: 133 IDKLAALDKLEDLLLAGNPLY 153
Score = 31.6 bits (72), Expect = 0.92
Identities = 31/165 (18%), Positives = 50/165 (30%), Gaps = 42/165 (25%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 527
L LS N I L+ + L L L N + I ++ L + + S
Sbjct: 50 CKHLALSTNNIEKI--SSLSGMEN------LRILSLGRNLIKKIENLDAVADTLEELWIS 101
Query: 528 SKKEGSPLALKVFIAGRNRLEN-EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 586
N++ + G +KL L + M N I + G D
Sbjct: 102 Y----------------NQIASLSG-------IEKLVNLRVLYMSNNKITNWGEI---DK 135
Query: 587 FEENKNLRHLNLNDNTITYKGAIPLGQA------LSKLPSLAILN 625
L L L N + + + +LP+L L+
Sbjct: 136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 39.3 bits (92), Expect = 0.002
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 555 LAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614
L A F L+ L + +VG+ ++S+ + L+ L L++N I L
Sbjct: 44 LTAEFVNLEFLS--------LINVGLISVSN-LPKLPKLKKLELSENRIFGG----LDML 90
Query: 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 660
KLP+L LNL LK S + L L+ ++L E++
Sbjct: 91 AEKLPNLTHLNLSGNKLKDI---STLEPLKKLECLKSLDLFNCEVT 133
Score = 36.3 bits (84), Expect = 0.017
Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 18/145 (12%)
Query: 542 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 601
+G + ++ + L + + + + I L+ F NL L+L +
Sbjct: 3 SGSSGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEF---VNLEFLSLINV 59
Query: 602 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEIS 660
+ +P KLP L L L + + L + L +NL+ N++
Sbjct: 60 GLISVSNLP------KLPKLKKLELSENRI-----FGGLDMLAEKLPNLTHLNLSGNKLK 108
Query: 661 VQGGLDLVKAMKNKTKLKQINVSEN 685
L+ +K ++ LK +++
Sbjct: 109 DISTLEPLKKLEC---LKSLDLFNC 130
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 40.1 bits (94), Expect = 0.003
Identities = 37/251 (14%), Positives = 74/251 (29%), Gaps = 55/251 (21%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG---ITGCKLLSK-ALH 522
A L LD ++ + D+ L +L +N + ++ L+ A
Sbjct: 42 ATLTSLDCHNS--------SITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACD 93
Query: 523 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 582
++ L N+L + L + +N + + ++
Sbjct: 94 SNKLTNLDVTPLTKLTYLNCDTNKLTK-------LDVSQNPLLTYLNCARNTLTEIDVSH 146
Query: 583 L---------------SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627
L L+ + N IT + +S+ L LN
Sbjct: 147 NTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT---ELD----VSQNKLLNRLNCD 199
Query: 628 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
+ L N L ++ + N+++ +D+ T+L + S N
Sbjct: 200 TNNITKLD-------LNQNIQLTFLDCSSNKLT---EIDV----TPLTQLTYFDCSVNPL 245
Query: 688 GEEGVEEMEKL 698
E V + KL
Sbjct: 246 TELDVSTLSKL 256
Score = 36.2 bits (84), Expect = 0.046
Identities = 42/225 (18%), Positives = 69/225 (30%), Gaps = 48/225 (21%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSK-AL 521
A V A I E LA L L +N+ + GI L+K
Sbjct: 21 ASEVAAAFEMQATDTISEEQLA---------TLTSLDCHNSSITDMTGIEKLTGLTKLIC 71
Query: 522 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 581
++ L N+L N L L + N + + ++
Sbjct: 72 TSNNITTLDLSQNTNLTYLACDSNKLTN-------LDVTPLTKLTYLNCDTNKLTKLDVS 124
Query: 582 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641
+N L +LN NT+T I +S L L+ +
Sbjct: 125 -------QNPLLTYLNCARNTLT---EID----VSHNTQLTELDCHLNKKITKLD----- 165
Query: 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 686
+T T L ++ + N+I+ LD+ L ++N N
Sbjct: 166 -VTPQTQLTTLDCSFNKIT---ELDV----SQNKLLNRLNCDTNN 202
Score = 36.2 bits (84), Expect = 0.051
Identities = 33/223 (14%), Positives = 58/223 (26%), Gaps = 47/223 (21%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL---GITGCKLLSK-ALHDC 524
L LD S N + V L L + N + + L+
Sbjct: 172 LTTLDCSFNKITELDVSQNK---------LLNRLNCDTNNITKLDLNQNIQLTFLDCSSN 222
Query: 525 YESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 584
+ L F N L KL TL + +
Sbjct: 223 KLTEIDVTPLTQLTYFDCSVNPLTELDVST----LSKLTTLH--------CIQTDLLEID 270
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 644
N L + + + + L +L+ + + + L+
Sbjct: 271 --LTHNTQLIYFQAEGCRKIKELDV------THNTQLYLLDCQAAGI-----TELD--LS 315
Query: 645 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
N L + L E++ LD+ + TKLK ++
Sbjct: 316 QNPKLVYLYLNNTELTE---LDV----SHNTKLKSLSCVNAHI 351
Score = 33.1 bits (76), Expect = 0.51
Identities = 46/268 (17%), Positives = 76/268 (28%), Gaps = 73/268 (27%)
Query: 469 LVELDLSDNAFGPIGVEGLADL------------LRSSCCFALEELKLNNNGL---GITG 513
L L N + V L L L S L L N L ++
Sbjct: 87 LTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSH 146
Query: 514 CKLLSK-ALHDCYESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP 571
L++ H + +K + +P L N++ + K L R+
Sbjct: 147 NTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-------VSQNKLLNRLNCD 199
Query: 572 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ-----------------A 614
N I T L +N L L+ + N +T I +
Sbjct: 200 TNNI-----TKLD--LNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDCSVNPLTELD 249
Query: 615 LSKLPSLAILNLGDCLLKSAGASSIAKY---------------LTDNTTLEDVNLTCNEI 659
+S L L L+ L + + +T NT L ++ I
Sbjct: 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI 309
Query: 660 SVQGGLDLVKAMKNKTKLKQINVSENQF 687
+ LDL KL + ++ +
Sbjct: 310 T---ELDL----SQNPKLVYLYLNNTEL 330
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 39.9 bits (93), Expect = 0.004
Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 16/139 (11%)
Query: 549 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGA 608
N + LK L+ + + +NG+ KN+ L D ++ +
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGL-----KNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 609 IPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV 668
+ + S+ +LNL +L S+ + L ++ ++L N I +
Sbjct: 418 HAYDRTCAWAESILVLNLSSNML----TGSVFRCLPPK--VKVLDLHNNRIM-----SIP 466
Query: 669 KAMKNKTKLKQINVSENQF 687
K + + L+++NV+ NQ
Sbjct: 467 KDVTHLQALQELNVASNQL 485
Score = 36.8 bits (85), Expect = 0.039
Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 557 AVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
L L + + N I +L F N++L +L+++ N + I
Sbjct: 70 PDISFLSELRVLRLSHNRI-----RSLDFHVFLFNQDLEYLDVSHNRLQ---NISCC--- 118
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ--GGLDLVKAMKN 673
+ SL L+L LT L + L+ + + +
Sbjct: 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTK---LTFLGLSAAKFRQLDLLPVAHLHLSCI 174
Query: 674 KTKLKQINVSENQFG 688
L ++ +
Sbjct: 175 LLDLVSYHIKGGETE 189
Score = 36.0 bits (83), Expect = 0.062
Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 22/167 (13%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGC--KLLSKALH 522
L+ + N F +G + L R L+ L L NGL + + S
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKR------LQTLILQRNGLKNFFKVALMTKNMSSLETL 408
Query: 523 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGIT 581
D +S + + L + +VF+ L ++ +++ N I
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI-----M 463
Query: 582 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628
++ + L+ LN+ N + ++P G +L SL + L D
Sbjct: 464 SIPKDVTHLQALQELNVASNQLK---SVPDG-VFDRLTSLQYIWLHD 506
Score = 31.4 bits (71), Expect = 1.9
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 591 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 650
+ LN N T S L L L L LK+ +A + ++LE
Sbjct: 353 SSFTFLNFTQNVFT---DSVFQ-GCSTLKRLQTLILQRNGLKN--FFKVALMTKNMSSLE 406
Query: 651 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
++++ N ++ ++ L N+S N
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVL---NLSSNML 440
Score = 30.6 bits (69), Expect = 2.9
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 19/98 (19%)
Query: 592 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 651
+ L+L+ N+I+ + + +S L L +L L ++S N LE
Sbjct: 53 RTKALSLSQNSISE---LRMP-DISFLSELRVLRLSHNRIRSLDFHVFLF----NQDLEY 104
Query: 652 VNLTCNEISV--QGGLDLVKAMKNKTKLKQINVSENQF 687
++++ N + + L+ +++S N F
Sbjct: 105 LDVSHNRLQNISCCPM---------ASLRHLDLSFNDF 133
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 39.2 bits (92), Expect = 0.005
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 24/142 (16%)
Query: 549 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKG 607
N+ + + + F +L L + + N + L F+E KNL L + DN +
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKL-----QTLPAGIFKELKNLETLWVTDNKLQ--- 98
Query: 608 AIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGG 664
A+P+G +L +LA L L LKS T L ++L NE+ S+ G
Sbjct: 99 ALPIG-VFDQLVNLAELRLDRNQLKSLPPRV------FDSLTKLTYLSLGYNELQSLPKG 151
Query: 665 LDLVKAMKNKTKLKQINVSENQ 686
T LK++ + NQ
Sbjct: 152 -----VFDKLTSLKELRLYNNQ 168
Score = 36.9 bits (86), Expect = 0.021
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 24/134 (17%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614
VF +L L + + +N + +L F+ L +L+L N + ++P G
Sbjct: 102 IGVFDQLVNLAELRLDRNQL-----KSLPPRVFDSLTKLTYLSLGYNELQ---SLPKG-V 152
Query: 615 LSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAM 671
KL SL L L + LK GA T L+ + L N++ V G A
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGA------FDKLTELKTLKLDNNQLKRVPEG-----AF 201
Query: 672 KNKTKLKQINVSEN 685
+ KLK + + EN
Sbjct: 202 DSLEKLKMLQLQEN 215
Score = 29.9 bits (68), Expect = 3.6
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 592 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTL 649
+ + L+L N ++ ++P A +L L +L L D L++ AG + L
Sbjct: 38 DTKKLDLQSNKLS---SLPSK-AFHRLTKLRLLYLNDNKLQTLPAGI------FKELKNL 87
Query: 650 EDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 687
E + +T N++ ++ G L ++ + NQ
Sbjct: 88 ETLWVTDNKLQALPIG-----VFDQLVNLAELRLDRNQL 121
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 39.1 bits (91), Expect = 0.006
Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 53/219 (24%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 527
+ ELDLS N I LA + LE L L++N L + LS
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTK------LELLNLSSNVLYETLDLESLST-------- 81
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L+ N ++ ++E + N I V +
Sbjct: 82 ---------LRTLDLNNNYVQE---------LLVGPSIETLHAANNNISRVSCSRGQ--- 120
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
+++ L +N IT + + L+L + + + +A
Sbjct: 121 ----GKKNIYLANNKIT---MLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASS---D 169
Query: 648 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 686
TLE +NL N I VK KLK +++S N+
Sbjct: 170 TLEHLNLQYNFIYD------VKGQVVFAKLKTLDLSSNK 202
Score = 39.1 bits (91), Expect = 0.007
Identities = 16/108 (14%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 582 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641
A+ + + + + D+++ ++ L+L L A+ +A
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLK---QALAS-LRQSAWNVKELDLSGNPLSQISAADLA- 55
Query: 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689
T LE +NL+ N + +++ + L+ ++++ N E
Sbjct: 56 ---PFTKLELLNLSSNVLYE------TLDLESLSTLRTLDLNNNYVQE 94
Score = 37.5 bits (87), Expect = 0.020
Identities = 34/298 (11%), Positives = 71/298 (23%), Gaps = 34/298 (11%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN- 507
+ + + + L +N + +E ++ LE L N
Sbjct: 204 AFMGPEFQSAAG--------VTWISLRNNKL--VLIEKALRFSQN-----LEHFDLRGNG 248
Query: 508 ----GLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK 563
L K K G + + A +L
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308
Query: 564 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 623
L+R E L E R ++ + + +
Sbjct: 309 ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR---TVIDQ-VTLRKQAKIT 364
Query: 624 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 683
L L N L G ++L A + ++ L+ +
Sbjct: 365 LEQKKKALDE---------QVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI 415
Query: 684 ENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNL 741
++ E VE+ + ++ + + + ++ E D N+ L
Sbjct: 416 VKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLA-EENARLKKLNGEADLALASANATL 472
Score = 37.1 bits (86), Expect = 0.026
Identities = 11/121 (9%), Positives = 38/121 (31%), Gaps = 14/121 (11%)
Query: 580 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 639
+ + F+ + ++L +N + + +AL +L +L ++
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLRGNGFHC---GTL 254
Query: 640 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLM 699
+ + N ++ + + G + + T + + ++L+
Sbjct: 255 RDFFSKNQRVQ--TVAKQTVKKLTGQNE----EECTVPTLGHYGAYCCEDLPAPFADRLI 308
Query: 700 K 700
Sbjct: 309 A 309
Score = 35.6 bits (82), Expect = 0.088
Identities = 30/225 (13%), Positives = 70/225 (31%), Gaps = 49/225 (21%)
Query: 462 LQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 521
++Q G R ++D++ ++EL L+ N L ++ + L
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWN------VKELDLSGNPLS----QISAADL 54
Query: 522 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 581
+ L++ N L + L TL +++ N +
Sbjct: 55 APFTK----------LELLNLSSNVLYETLD------LESLSTLRTLDLNNNYV------ 92
Query: 582 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641
++ L+ +N I+ + S+ + L + +
Sbjct: 93 ---QELLVGPSIETLHAANNNISR---VS----CSRGQGKKNIYLANNKITMLRDLDEGC 142
Query: 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 686
+ ++ ++L NEI +L + L+ +N+ N
Sbjct: 143 R----SRVQYLDLKLNEIDTVNFAELAASSDT---LEHLNLQYNF 180
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 38.1 bits (89), Expect = 0.008
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 33/159 (20%)
Query: 471 ELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKK 530
EL L++N F + G+ L L ++ +NN + + A
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQ-----LRKINFSNNKIT----DIEEGAFEGASG---- 82
Query: 531 EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEE 589
+ + NRLEN + +FK L++L+ + + N I T + +D+F
Sbjct: 83 ------VNEILLTSNRLEN----VQHKMFKGLESLKTLMLRSNRI-----TCVGNDSFIG 127
Query: 590 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628
++R L+L DN IT + G A L SL+ LNL
Sbjct: 128 LSSVRLLSLYDNQIT---TVAPG-AFDTLHSLSTLNLLA 162
Score = 34.6 bits (80), Expect = 0.097
Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616
F+ + + + N + + F+ ++L+ L L N IT + +
Sbjct: 76 AFEGASGVNEILLTSNRL-----ENVQHKMFKGLESLKTLMLRSNRIT---CVGND-SFI 126
Query: 617 KLPSLAILNLGDCLLKS 633
L S+ +L+L D + +
Sbjct: 127 GLSSVRLLSLYDNQITT 143
Score = 30.8 bits (70), Expect = 1.6
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 14/105 (13%)
Query: 584 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643
+ F++ LR +N ++N IT I G A + + L L++ L
Sbjct: 50 TGIFKKLPQLRKINFSNNKIT---DIEEG-AFEGASGVNEILLTSNRLENVQHKMFKG-L 104
Query: 644 TDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 687
TL L N I V + + ++ +++ +NQ
Sbjct: 105 ESLKTL---MLRSNRITCVGND-----SFIGLSSVRLLSLYDNQI 141
Score = 28.9 bits (65), Expect = 7.6
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 601
F L ++ + + N I V AF+ +L LNL N
Sbjct: 124 SFIGLSSVRLLSLYDNQITTV----APGAFDTLHSLSTLNLLAN 163
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 38.7 bits (90), Expect = 0.010
Identities = 46/206 (22%), Positives = 70/206 (33%), Gaps = 45/206 (21%)
Query: 449 TEIPDALRYL---GNGLQQ---AGARLVELDLSDNAFG--PIGVEGLADLLRSSCCF--- 497
+P L L GN L L EL +SDN P L L +
Sbjct: 117 PALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSL 176
Query: 498 -----ALEELKLNNNGL-----GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 547
L+EL +++N L + L ++ +S P LK I NRL
Sbjct: 177 PMLPSGLQELSVSDNQLASLPTLPSELYKLW--AYNNRLTSLPA-LPSGLKELIVSGNRL 233
Query: 548 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKG 607
+ L + +LK L + +T+L L L++ N +T
Sbjct: 234 TS-----LPVLPSELKELM--------VSGNRLTSLP---MLPSGLLSLSVYRNQLTR-- 275
Query: 608 AIPLGQALSKLPSLAILNLGDCLLKS 633
+P ++L L S +NL L
Sbjct: 276 -LP--ESLIHLSSETTVNLEGNPLSE 298
Score = 32.2 bits (73), Expect = 1.1
Identities = 33/226 (14%), Positives = 72/226 (31%), Gaps = 63/226 (27%)
Query: 487 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546
+ +R+ L + +GL ++ + P + + N
Sbjct: 30 VVQKMRACLNNGNAVLNVGESGL-----------------TTLPDCLPAHITTLVIPDNN 72
Query: 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYK 606
L + L A+ +L+TLE + +T+L L + +
Sbjct: 73 LTS-----LPALPPELRTLE--------VSGNQLTSLPVLPPGLLELSIFSNPLTHLP-- 117
Query: 607 GAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV----Q 662
+ L L + L S L++++++ N+++
Sbjct: 118 ---------ALPSGLCKLWIFGNQLTSLPVLP--------PGLQELSVSDNQLASLPALP 160
Query: 663 GGLDLVKAMKNK--------TKLKQINVSENQFGE--EGVEEMEKL 698
L + A N+ + L++++VS+NQ E+ KL
Sbjct: 161 SELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKL 206
Score = 29.9 bits (67), Expect = 5.9
Identities = 35/190 (18%), Positives = 56/190 (29%), Gaps = 52/190 (27%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
T +PD L A + L + DN L L L L+++ N
Sbjct: 53 TTLPDCL----------PAHITTLVIPDNNL-----TSLPALPPE-----LRTLEVSGNQ 92
Query: 509 L-----GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK 563
L G LS + + P L N+L + L + L+
Sbjct: 93 LTSLPVLPPGLLELS--IFSNPLTHLPA-LPSGLCKLWIFGNQLTS-----LPVLPPGLQ 144
Query: 564 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 623
L + + +L L L +N +T ++P L
Sbjct: 145 ELS--------VSDNQLASLPALPS---ELCKLWAYNNQLT---SLP-----MLPSGLQE 185
Query: 624 LNLGDCLLKS 633
L++ D L S
Sbjct: 186 LSVSDNQLAS 195
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 37.6 bits (88), Expect = 0.015
Identities = 18/142 (12%), Positives = 44/142 (30%), Gaps = 19/142 (13%)
Query: 498 ALEELKLNN-NGL-----GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEG 551
E L L ++ + A + + S+ ++ + ++ L+
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72
Query: 552 AKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611
+ A LE + V + D +L+H+ ++ + +P
Sbjct: 73 DLLEDATQPGRVALE--------LRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELP- 120
Query: 612 GQALSKLPSLAILNLGDCLLKS 633
+ + L L L L++
Sbjct: 121 -DTMQQFAGLETLTLARNPLRA 141
Score = 34.1 bits (79), Expect = 0.19
Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 55/191 (28%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRS-SCCFALEELKLNNN 507
+ PD L + L + + GL +L + LE L L N
Sbjct: 94 PQFPDQAFRLSH--------LQHMTIDAA--------GLMELPDTMQQFAGLETLTLARN 137
Query: 508 GL-----GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL----ENEGAKMLAAV 558
L I L + + I L E + +
Sbjct: 138 PLRALPASIASLNRLRE-------------------LSIRACPELTELPEPLASTDASGE 178
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
+ L L+ + + GI +L + +NL+ L + ++ ++ LG A+ L
Sbjct: 179 HQGLVNLQSLRLEWTGI-----RSLPASIANLQNLKSLKIRNSPLSA-----LGPAIHHL 228
Query: 619 PSLAILNLGDC 629
P L L+L C
Sbjct: 229 PKLEELDLRGC 239
Score = 32.6 bits (75), Expect = 0.60
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 578 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 633
+ T S + NL+ L L I L +++ L +L L + + L +
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRS-----LPASIANLQNLKSLKIRNSPLSA 220
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 37.8 bits (87), Expect = 0.017
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 15/81 (18%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617
+ L L + + ++G+ V DAF L LNL+ N + L +
Sbjct: 51 DLRGLGELRNLTIVKSGLRFVA----PDAFHFTPRLSRLNLSFNALES-----LSWKTVQ 101
Query: 618 LPSLAILNLG------DCLLK 632
SL L L C L+
Sbjct: 102 GLSLQELVLSGNPLHCSCALR 122
Score = 37.4 bits (86), Expect = 0.020
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 559 FKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617
+ L + + + L LR+L + + + + + A
Sbjct: 27 LPGAENLTELYIENQQH----LQHLELRDLRGLGELRNLTIVKSGLRF---VAPD-AFHF 78
Query: 618 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 657
P L+ LNL L+S ++ L L C+
Sbjct: 79 TPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCS 118
Score = 33.2 bits (75), Expect = 0.36
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 11/78 (14%)
Query: 585 DAFEENKNLRHLNL-NDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY- 642
+NL L + N + + L L L L L + L +A
Sbjct: 25 HHLPGAENLTELYIENQQHLQ---HLELR-DLRGLGELRNLTIVKSGL-----RFVAPDA 75
Query: 643 LTDNTTLEDVNLTCNEIS 660
L +NL+ N +
Sbjct: 76 FHFTPRLSRLNLSFNALE 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 37.3 bits (86), Expect = 0.027
Identities = 45/292 (15%), Positives = 92/292 (31%), Gaps = 62/292 (21%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
+ +PD L ++ L+++ NA L +L S LE L +N
Sbjct: 72 SSLPDNL----------PPQITVLEITQNAL-----ISLPELPAS-----LEYLDACDNR 111
Query: 509 L-----GITGCKLLSKALHDCYESSKKE--GSPLALKVFIAGRNRLENEGAKMLAAVFKK 561
L K L D + P L+ A N+L ML +
Sbjct: 112 LSTLPELPASLKHL-----DVDNNQLTMLPELPALLEYINADNNQLT-----MLPELPTS 161
Query: 562 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP--LGQALSKLP 619
L+ L + + +T L + E +L L+++ N + ++P +
Sbjct: 162 LEVLS--------VRNNQLTFLPELPE---SLEALDVSTNLLE---SLPAVPVRNHHSEE 207
Query: 620 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 679
+ + + + I + + + L N +S + + +++ +T
Sbjct: 208 TEIFFRCRENRI-----THIPENILSLDPTCTIILEDNPLSSR----IRESLSQQTAQPD 258
Query: 680 INVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEEND 731
+ F ++ A E+ + + S E EE +
Sbjct: 259 YHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHAN 310
Score = 30.3 bits (68), Expect = 3.3
Identities = 59/420 (14%), Positives = 121/420 (28%), Gaps = 58/420 (13%)
Query: 455 LRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----G 510
+ A + + L LL+ EL+LN L
Sbjct: 22 ISGTYADYFSAWDKWEKQALPGENR-----NEAVSLLKECLINQFSELQLNRLNLSSLPD 76
Query: 511 ITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEM 570
++ + S E P +L+ A NRL L + LK L+
Sbjct: 77 NLPPQITVLEITQNALISLPE-LPASLEYLDACDNRLST-----LPELPASLKHLD---- 126
Query: 571 PQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP---------------LGQAL 615
+ + +T L E L ++N ++N +T +P L
Sbjct: 127 ----VDNNQLTMLP---ELPALLEYINADNNQLT---MLPELPTSLEVLSVRNNQLTFLP 176
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 675
SL L++ LL+S A + T N I+ + + + +
Sbjct: 177 ELPESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRIT-----HIPENILSLD 230
Query: 676 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAE 735
I + +N E + + + + ++ E
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPE 290
Query: 736 GDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHSVSQLKQHSVTDFLAAPSVSLFNS 795
S++S H + + + + + + S ++ V +L S S
Sbjct: 291 NKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFRE-QVAAWLEKLSAS--AE 347
Query: 796 LGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSPSS--SLFECTKVLYR 853
L Q F ++ ++ ++ + LV + + +L + ++R
Sbjct: 348 L---RQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFR 404
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 35.8 bits (83), Expect = 0.029
Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 20/128 (15%)
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
+ +++ I I L ++ +DN I L L
Sbjct: 15 YTNAVRDRELDLRGYKIPV--IENLGATL---DQFDAIDFSDNEIR-----KLDG-FPLL 63
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 677
L L + + + I + L L ++ LT N + G LD + ++K+ L
Sbjct: 64 RRLKTLLVNNNRI-----CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS---L 115
Query: 678 KQINVSEN 685
+ + N
Sbjct: 116 TYLCILRN 123
Score = 33.5 bits (77), Expect = 0.18
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 41/163 (25%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG-ITGCKLLSKALHDCYE 526
R ELDL I E L L + + ++N + + G LL +
Sbjct: 20 RDRELDLRGYKIPVI--ENLGATLDQ-----FDAIDFSDNEIRKLDGFPLLRR------- 65
Query: 527 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 586
LK + NR+ ++ + + L L + + N + +G D
Sbjct: 66 ----------LKTLLVNNNRIC----RIGEGLDQALPDLTELILTNNSLVELGDL---DP 108
Query: 587 FEENKNLRHLNLNDNTIT----YKGAIPLGQALSKLPSLAILN 625
K+L +L + N +T Y+ + + K+P + +L+
Sbjct: 109 LASLKSLTYLCILRNPVTNKKHYRLYV-----IYKVPQVRVLD 146
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 36.1 bits (84), Expect = 0.035
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQA 614
+ F L + +E+ +T + DA +E L+ L + + + P
Sbjct: 73 SHSFYNLSKVTHIEIRNTRN----LTYIDPDALKELPLLKFLGIFNTGLK---MFPDLTK 125
Query: 615 LSKLPSLAILNLGD 628
+ IL + D
Sbjct: 126 VYSTDIFFILEITD 139
Score = 29.2 bits (66), Expect = 6.1
Identities = 6/51 (11%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 580 ITAL-SDAFEENKNLRHLNLNDN-TITYKGAIPLGQALSKLPSLAILNLGD 628
+ + S AF N+ + ++ + T+ + + L + + + +
Sbjct: 43 LRTIPSHAFSNLPNISRIYVSIDVTLQQ---LESH-SFYNLSKVTHIEIRN 89
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 35.8 bits (83), Expect = 0.046
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 580 ITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 638
I + AF K LR ++L++N I+ + A L SL L L + S
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQIS---ELAPD-AFQGLRSLNSLVLYGNKITELPKSL 99
Query: 639 IAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 687
+L+ + L N+I ++ A ++ L +++ +N+
Sbjct: 100 FEGL----FSLQLLLLNANKINCLRVD-----AFQDLHNLNLLSLYDNKL 140
Score = 34.6 bits (80), Expect = 0.10
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617
+F+ L +L+ + + N I + DAF++ NL L+L DN + I G S
Sbjct: 99 LFEGLFSLQLLLLNANKINCL----RVDAFQDLHNLNLLSLYDNKLQ---TIAKG-TFSP 150
Query: 618 LPSLAILNLGD 628
L ++ ++L
Sbjct: 151 LRAIQTMHLAQ 161
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 35.8 bits (83), Expect = 0.046
Identities = 39/203 (19%), Positives = 69/203 (33%), Gaps = 45/203 (22%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSKALH 522
A V+ +L + DL+ ++ +N+ + G+ L K L
Sbjct: 19 ANAVKQNLGKQ--------SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNL-KEL- 68
Query: 523 DCYESSKKEGSPLA----LKVFIAGRNRLEN-EGAKMLAAVFKKLKTLERVEMPQNGIYH 577
+ + SPL L+ RNRL+N G L R+ + N +
Sbjct: 69 HLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA--------CLSRLFLDNNELRD 120
Query: 578 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 637
D+ KNL L++ +N + I L L L +L+L + +
Sbjct: 121 T------DSLIHLKNLEILSIRNNKLKS---IV---MLGFLSKLEVLDLHGNEITN---- 164
Query: 638 SIAKYLTDNTTLEDVNLTCNEIS 660
LT + ++LT +
Sbjct: 165 --TGGLTRLKKVNWIDLTGQKCV 185
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 35.1 bits (82), Expect = 0.047
Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 15/113 (13%)
Query: 575 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 634
+ +T L A E L +T + A+ +LP + L L
Sbjct: 11 EIYQELTRLKAAVGELPEKSKLQEIYQELT---RLK--AAVGELPEKSKLQEIYQEL--- 62
Query: 635 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
+ + + + + E++ L A+ + ++ +
Sbjct: 63 --TRLKAAVGELPEKSKLQEIYQELT-----RLKAAVGELPEKSKLQEIYQEL 108
Score = 31.3 bits (72), Expect = 0.83
Identities = 25/187 (13%), Positives = 41/187 (21%), Gaps = 49/187 (26%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFG--PIGVEGLADLLRSSCCFALEELKLNN 506
T + A+ L +L V L +L+
Sbjct: 17 TRLKAAVGELPE--------KSKLQEIYQELTRLKAAVGELP---------EKSKLQEIY 59
Query: 507 NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 566
L L A+ G L L A +L
Sbjct: 60 QEL-----TRLKAAV----------GELPEKSKLQEIYQELT-----RLKAAVGELPEKS 99
Query: 567 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626
+++ + T L A E L +T + A+ +LP +
Sbjct: 100 KLQEIYQEL-----TELKAAVGELPEKSKLQEIYQELT---QLK--AAVGELPDQSKQQQ 149
Query: 627 GDCLLKS 633
L
Sbjct: 150 IYQELTD 156
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 35.7 bits (83), Expect = 0.077
Identities = 36/225 (16%), Positives = 64/225 (28%), Gaps = 54/225 (24%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSKALH 522
+ EL+L++ + LE L + N L K L
Sbjct: 72 QAHELELNNLGLSSL----------PELPPHLESLVASCNSLTELPELPQSLKSLLVD-- 119
Query: 523 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 582
P L+ N+LE + L+ +++ N +
Sbjct: 120 -NNNLKALSDLPPLLEYLGVSNNQLEK------LPELQNSSFLKIIDVDNN--------S 164
Query: 583 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 642
L + +L + +N + +P L LP L + + LK
Sbjct: 165 LKKLPDLPPSLEFIAAGNNQLEE---LP---ELQNLPFLTAIYADNNSLKK--------- 209
Query: 643 LTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 686
L D +LE + N + + ++N L I N
Sbjct: 210 LPDLPLSLESIVAGNNILEE------LPELQNLPFLTTIYADNNL 248
Score = 31.5 bits (72), Expect = 1.6
Identities = 44/246 (17%), Positives = 80/246 (32%), Gaps = 69/246 (28%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADL-------LRSSCCFALEE 501
TE+P + + E + + + G + LR E
Sbjct: 24 TEMPVEAENVKS--------KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75
Query: 502 LKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK 561
L+LNN GL +L + P L+ +A N L L + +
Sbjct: 76 LELNNLGL---------SSLPE---------LPPHLESLVASCNSLTE-----LPELPQS 112
Query: 562 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 621
LK+L + + + ALSD L +L +++N + +P L L
Sbjct: 113 LKSLL--------VDNNNLKALSDLPP---LLEYLGVSNNQLE---KLP---ELQNSSFL 155
Query: 622 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 681
I+++ + LK + +LE + N++ + ++N L I
Sbjct: 156 KIIDVDNNSLK-----KLPDLP---PSLEFIAAGNNQLEE------LPELQNLPFLTAIY 201
Query: 682 VSENQF 687
N
Sbjct: 202 ADNNSL 207
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 34.4 bits (80), Expect = 0.17
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 591 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 650
L +L + ++ GAIP LS++ +L L+ L +G ++ ++ L
Sbjct: 101 TQLHYLYITHTNVS--GAIP--DFLSQIKTLVTLDFSYNAL--SG--TLPPSISSLPNLV 152
Query: 651 DVNLTCNEIS 660
+ N IS
Sbjct: 153 GITFDGNRIS 162
Score = 33.3 bits (77), Expect = 0.34
Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 45/191 (23%)
Query: 450 EIPDALRYLGNGLQQAGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNG 508
IPD L + LV LD S NA G + ++ L L + + N
Sbjct: 116 AIPDFLSQIKT--------LVTLDFSYNALSGTLPPS-ISSLPN------LVGITFDGNR 160
Query: 509 L------GITGCKLLSKAL--HDCYESSK--KEGSPLALKVFIAGRNRLENEGAKMLAAV 558
+ L ++ + K + L L RN LE + + +
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD----ASVL 216
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDA---FEENKNLRHLNLNDNTITYKGAIPLGQAL 615
F K +++ + +N +L+ +KNL L+L +N I G +P Q L
Sbjct: 217 FGSDKNTQKIHLAKN--------SLAFDLGKVGLSKNLNGLDLRNNRIY--GTLP--QGL 264
Query: 616 SKLPSLAILNL 626
++L L LN+
Sbjct: 265 TQLKFLHSLNV 275
Score = 30.2 bits (69), Expect = 3.6
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 590 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 649
N NL ++L+ N + G + ++L L A + K + + L
Sbjct: 196 NLNLAFVDLSRNMLE--GDAS--VLFGSDKNTQKIHLAKNSL----AFDLGK-VGLSKNL 246
Query: 650 EDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
++L N I G L + + L +NVS N
Sbjct: 247 NGLDLRNNRIY--GTLP--QGLTQLKFLHSLNVSFNNL 280
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 34.0 bits (78), Expect = 0.20
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 16/102 (15%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
+ F + E N + + +D F L+++ I +P L
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELP----NDVFHGASGPVILDISRTRIHS---LPSY-GL 222
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 657
L L + + LK L L + +LT
Sbjct: 223 ENLKKLRARSTYN--LKKLPT------LEKLVALMEASLTYP 256
Score = 33.3 bits (76), Expect = 0.41
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 575 IYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 633
+ + AF +L + ++ N + I S LP L + + K+
Sbjct: 37 FVLTKLRVIQKGAFSGFGDLEKIEISQNDVL--EVIEAD-VFSNLPKLHEIR----IEKA 89
Query: 634 AGASSI-AKYLTDNTTLEDVNLTCNEIS 660
I + + L+ + ++ I
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIK 117
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 33.5 bits (77), Expect = 0.51
Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 14/141 (9%)
Query: 657 NEISVQGGLDLVKAMKNKT------KLKQINVSENQFG-EEG--VEE--MEKLMKSFGMA 705
+E VQ LD KA + +T +L + ++ G + G VE+ ++LM+ G+
Sbjct: 561 SEAVVQAALD--KAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIY 618
Query: 706 AALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHN 765
LV+ G E +E + +++ D +S S + + +Q
Sbjct: 619 FKLVMTQTAGNE-IELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRK 677
Query: 766 TSNQSHSVSQLKQHSVTDFLA 786
S + + S L
Sbjct: 678 LSTKEALDEDVPPASFWRILK 698
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.58
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 19/41 (46%)
Query: 361 LKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAIN 401
LKKL++ S KL +A + A + AI
Sbjct: 22 LKKLQA--------SLKL-YA--------DDSAPAL--AIK 43
Score = 29.9 bits (66), Expect = 2.6
Identities = 11/50 (22%), Positives = 13/50 (26%), Gaps = 34/50 (68%)
Query: 613 QALSKL------------PSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 650
QAL KL P+LAI T+E
Sbjct: 20 QALKKLQASLKLYADDSAPALAI----------------------KATME 47
Score = 29.5 bits (65), Expect = 2.7
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 38/67 (56%)
Query: 925 EKKSRAGIQLDTVIRLCKMFDLSKESSTKGRRTPCQQCNMCIILGLLAEKLAGPSSV-AM 983
EK++ ++ K+ ++S L KL S A+
Sbjct: 18 EKQA---------LK--KL-----QAS-------------------L--KLYADDSAPAL 40
Query: 984 LTQGTLE 990
+ T+E
Sbjct: 41 AIKATME 47
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 32.3 bits (74), Expect = 0.69
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSD-AFEENKNLRHLNLNDNTITYKGAIPLGQALS 616
K+L L + + N + +L + F++ NL+ L L +N + ++P G
Sbjct: 80 ALKELTNLTYLILTGNQL-----QSLPNGVFDKLTNLKELVLVENQLQ---SLPDG-VFD 130
Query: 617 KLPSLAILNLGDCLLKS 633
KL +L LNL L+S
Sbjct: 131 KLTNLTYLNLAHNQLQS 147
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 30.5 bits (69), Expect = 0.97
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 592 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628
+ L L N +T A+P G L LP+L +LG
Sbjct: 32 DTTELVLTGNNLT---ALPPG-LLDALPALRTAHLGA 64
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 31.8 bits (71), Expect = 1.1
Identities = 11/62 (17%), Positives = 25/62 (40%)
Query: 6 VLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSN 65
++E + + S EN+S+ SN S + +S+ +N+ +N + +
Sbjct: 293 IIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEEGAKS 352
Query: 66 QS 67
Sbjct: 353 NE 354
Score = 31.8 bits (71), Expect = 1.1
Identities = 11/62 (17%), Positives = 25/62 (40%)
Query: 709 VLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSN 768
++E + + S EN+S+ SN S + +S+ +N+ +N + +
Sbjct: 293 IIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEEGAKS 352
Query: 769 QS 770
Sbjct: 353 NE 354
Score = 30.3 bits (67), Expect = 3.3
Identities = 5/70 (7%), Positives = 17/70 (24%), Gaps = 1/70 (1%)
Query: 702 FGMAAALVLEDDEGECSDEE-QDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNS 760
+ + D E+ +S +++ N + ++ +
Sbjct: 289 YLGIIIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEE 348
Query: 761 NQSHNTSNQS 770
N +
Sbjct: 349 GAKSNEDPLT 358
Score = 29.9 bits (66), Expect = 4.7
Identities = 5/61 (8%), Positives = 16/61 (26%), Gaps = 1/61 (1%)
Query: 8 EDDEGECSDEE-QDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQ 66
+ D E+ +S +++ N + ++ + N
Sbjct: 298 SNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEEGAKSNEDPL 357
Query: 67 S 67
+
Sbjct: 358 T 358
>3h0g_F DNA-directed RNA polymerases I, II, and III subunit rpabc2;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 142
Score = 30.8 bits (69), Expect = 1.1
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 8 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQS 67
ED+ +EE +E D G + + + + + + + QS
Sbjct: 6 EDEAFGMDGAVMEEEVDELEMIDENGQS-----QQGVSHPGEPSTTVITEDVASSKTAQS 60
Query: 68 HSVSQLKQHSVTDFL 82
+ + T ++
Sbjct: 61 GKAVAKEDRTTTPYM 75
Score = 30.8 bits (69), Expect = 1.1
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 711 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQS 770
ED+ +EE +E D G + + + + + + + QS
Sbjct: 6 EDEAFGMDGAVMEEEVDELEMIDENGQS-----QQGVSHPGEPSTTVITEDVASSKTAQS 60
Query: 771 HSVSQLKQHSVTDFL 785
+ + T ++
Sbjct: 61 GKAVAKEDRTTTPYM 75
Score = 28.5 bits (63), Expect = 6.0
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 15 SDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHSVSQLK 74
SD E+DE + E + L D N + + T + + S +
Sbjct: 2 SDYEEDEAFGMDGAVMEE-EVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQS 60
Query: 75 QHSVTD 80
+V
Sbjct: 61 GKAVAK 66
Score = 28.5 bits (63), Expect = 6.0
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 718 SDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHSVSQLK 777
SD E+DE + E + L D N + + T + + S +
Sbjct: 2 SDYEEDEAFGMDGAVMEE-EVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQS 60
Query: 778 QHSVTD 783
+V
Sbjct: 61 GKAVAK 66
Score = 28.5 bits (63), Expect = 6.3
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 8 EDDEGECSDEEQDEESEEE---NDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHN 62
E+DE D EE +E D + + + + + + + + + QS
Sbjct: 5 EEDEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQSGK 62
Score = 28.5 bits (63), Expect = 6.3
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 711 EDDEGECSDEEQDEESEEE---NDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHN 765
E+DE D EE +E D + + + + + + + + + QS
Sbjct: 5 EEDEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQSGK 62
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 30.8 bits (70), Expect = 1.7
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 549 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKG 607
A + A F+ L L + + N + LS F++ L L L +N +
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLGLANNQLA--- 96
Query: 608 AIPLGQALSKLPSLAILNLGDCLLKS 633
++PLG L L L LG LKS
Sbjct: 97 SLPLG-VFDHLTQLDKLYLGGNQLKS 121
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 31.1 bits (69), Expect = 1.8
Identities = 6/37 (16%), Positives = 18/37 (48%)
Query: 8 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSN 44
E+ + + +EE D+ E++D ++ + + +
Sbjct: 374 EEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQ 410
Score = 31.1 bits (69), Expect = 1.8
Identities = 6/37 (16%), Positives = 18/37 (48%)
Query: 711 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSN 747
E+ + + +EE D+ E++D ++ + + +
Sbjct: 374 EEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQ 410
Score = 30.7 bits (68), Expect = 2.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 702 FGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSN 740
G A E+DE E ++E +EE ++ D +G+++
Sbjct: 361 TGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAE 399
Score = 30.3 bits (67), Expect = 3.6
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 8 EDDEGECSDEEQDEESEEENDSDAEGDNSN 37
E+DE E ++E +EE ++ D +G+++
Sbjct: 370 EEDEEEADEDEDEEEDDDHGLEDDDGESAE 399
Score = 29.9 bits (66), Expect = 5.0
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 8 EDDEGECSDEEQDEESEEENDSDAEGDNSN 37
+++E + ++E++++ D D E
Sbjct: 372 DEEEADEDEDEEEDDDHGLEDDDGESAEEQ 401
Score = 29.9 bits (66), Expect = 5.0
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 711 EDDEGECSDEEQDEESEEENDSDAEGDNSN 740
+++E + ++E++++ D D E
Sbjct: 372 DEEEADEDEDEEEDDDHGLEDDDGESAEEQ 401
Score = 29.5 bits (65), Expect = 6.8
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 8 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQS 60
+ E E +EE DE+ +EE D D ++ + + + QS
Sbjct: 365 LEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPECKQS 417
Score = 29.5 bits (65), Expect = 6.8
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 711 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQS 763
+ E E +EE DE+ +EE D D ++ + + + QS
Sbjct: 365 LEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPECKQS 417
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 30.8 bits (70), Expect = 1.8
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 549 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKG 607
N+ K+ VF L L+ + + N + AL F+ L L+L N +T
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQL-----GALPVGVFDSLTQLTVLDLGTNQLT--- 101
Query: 608 AIPLGQALSKLPSLAILNLGDCLLKS 633
+P +L L L + L
Sbjct: 102 VLPSA-VFDRLVHLKELFMCCNKLTE 126
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo
receptor, structural genomics, NPPSFA; 1.52A
{Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A
2a6x_A
Length = 226
Score = 29.9 bits (67), Expect = 3.7
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 564 TLERVEMPQNGIYHVGITA----LSDAFE 588
+V+ + + +G +A ++FE
Sbjct: 183 QTRKVKFMGSSPFRIGTSAINDASKESFE 211
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 29.9 bits (67), Expect = 3.7
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 422 KAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGP 481
+ I A K + AL + P+ L + Q G L+E D++D
Sbjct: 16 RHIVWASIKAGNPTYAL----VRKTITAANPETKEELIDNYQSLGVILLEGDIND----- 66
Query: 482 IGVEGLADLLR 492
E L ++
Sbjct: 67 --HETLVKAIK 75
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 29.9 bits (67), Expect = 4.1
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 422 KAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGP 481
K I +A H L R + + +Q GA+L+E L D
Sbjct: 18 KRIVNASISLGHPTYVL------FRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD----- 66
Query: 482 IGVEGLADLLR 492
+ L D L+
Sbjct: 67 --HQRLVDALK 75
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 28.9 bits (64), Expect = 4.8
Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 8 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQS 67
E+ + ++ +D + E +D + + + N + ++
Sbjct: 5 EEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGE-TTDANGKTIVTGGNGPEDFQQHEQ 63
Query: 68 HSVSQLKQHSVTD 80
LK+ ++
Sbjct: 64 IRRKTLKEKAIPK 76
Score = 28.9 bits (64), Expect = 4.8
Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 711 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQS 770
E+ + ++ +D + E +D + + + N + ++
Sbjct: 5 EEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGE-TTDANGKTIVTGGNGPEDFQQHEQ 63
Query: 771 HSVSQLKQHSVTD 783
LK+ ++
Sbjct: 64 IRRKTLKEKAIPK 76
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 29.2 bits (65), Expect = 5.7
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 552 AKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 604
A L + + + L + + N +Y + +S ++ NL+ LNL+ N +
Sbjct: 159 AATLRIIEENIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELK 209
Score = 29.2 bits (65), Expect = 6.2
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 580 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG 635
L E L LNL++N + + + K P+L ILNL LKS
Sbjct: 159 AATLRIIEENIPELLSLNLSNNRLY--RLDDMSSIVQKAPNLKILNLSGNELKSER 212
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 28.8 bits (65), Expect = 6.5
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 580 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 633
T + K+L ++L++N I+ + + S + L L L L+
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRIS---TLSNQ-SFSNMTQLLTLILSYNRLRC 92
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 29.3 bits (66), Expect = 7.8
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 3/69 (4%)
Query: 685 NQFGEEGVEEMEKLMKSFGMAAALVLEDD--EGECSDEEQDEESEEEN-DSDAEGDNSNL 741
QF +E + + L D+ D E+ + D + +
Sbjct: 406 EQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQVDVDGGQKLISEED 465
Query: 742 SHNDSNHSH 750
+ +H H
Sbjct: 466 LLLEHHHHH 474
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 317
Score = 28.6 bits (63), Expect = 9.4
Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Query: 667 LVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEES 726
++ K L + E V+ +F AA + + +
Sbjct: 241 IINGYKRVLALS-VETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVE 299
Query: 727 EEENDSDAEGD 737
+E +++ D
Sbjct: 300 AKEESEESDED 310
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.355
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,749,817
Number of extensions: 808955
Number of successful extensions: 3363
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1810
Number of HSP's successfully gapped: 376
Length of query: 999
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 896
Effective length of database: 3,825,930
Effective search space: 3428033280
Effective search space used: 3428033280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (27.5 bits)