RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18075
(999 letters)
>d2grrb1 a.118.12.1 (B:431-587) Ran-GTPase activating protein 1
(RanGAP1), C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 157
Score = 85.3 bits (211), Expect = 6e-20
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 781 VTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSP 840
V+ FLA PS LGP + L + ++ ++ + A +KVSS+ T++
Sbjct: 4 VSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVS----AFLKVSSVFKDEATVRMA 59
Query: 841 SSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTAVR 900
+ L ++ FN +S +T LLVH+GL+K EDK K NL G + A+
Sbjct: 60 V---QDAVDALMQKAFNSSSF--NSNTFLTRLLVHMGLLKSEDK-VKAIANLYGPLMALN 113
Query: 901 LLSEAKLLPSLTESQLLACM 920
+ + P LLA +
Sbjct: 114 HMVQQDYFPKALAPLLLAFV 133
Score = 65.6 bits (160), Expect = 4e-13
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 174 ESMLLAIMKVSSLVPSTTTLPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLI 233
E ++ A +KVSS+ T+ ++ + L ++ FN +S +T LLVH+GL+
Sbjct: 37 EKVVSAFLKVSSVFKDEATV-RMAVQDAVDALMQKAFNSSSF--NSNTFLTRLLVHMGLL 93
Query: 234 KCEDKSFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLACM 274
K EDK K NL G + A+ + + P LLA +
Sbjct: 94 KSEDK-VKAIANLYGPLMALNHMVQQDYFPKALAPLLLAFV 133
Score = 41.0 bits (96), Expect = 1e-04
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 78 VTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSL 137
V+ FLA PS LGP + L + ++ ++ + A +KVSS+ T++
Sbjct: 4 VSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVS----AFLKVSSVFKDEATVRMA 59
Query: 138 TV-LSCSLMKSTVSLKTENLVFVLT 161
+LM+ + + N LT
Sbjct: 60 VQDAVDALMQKAFNSSSFNSNTFLT 84
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 88.8 bits (218), Expect = 2e-19
Identities = 110/346 (31%), Positives = 163/346 (47%), Gaps = 12/346 (3%)
Query: 377 KLSFAGQGLKLDN--KEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHF 434
+ S G+ LKLD ED K + + E + + L GNT+G AA+ +++ ++ +
Sbjct: 2 RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61
Query: 435 KRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSS 494
+ A + D+FTGR+K EIP+ALR L +L + LSDNAFGP E L D L
Sbjct: 62 EIAEFSDIFTGRVKDEIPEALRLLLQ-ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120
Query: 495 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKM 554
L N +KK + L+ I GRNRLEN K
Sbjct: 121 TPLEHLYLHNNGL---GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 177
Query: 555 LAAVFKKLKTLERVEMPQNGIYHVGITALSD-AFEENKNLRHLNLNDNTITYKGAIPLGQ 613
A F+ + L V+M QNGI GI L + L+ L+L DNT T+ G+ L
Sbjct: 178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237
Query: 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKAM 671
AL P+L L L DCLL + GA+++ + +N L+ + L NEI + L +
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 297
Query: 672 KNK-TKLKQINVSENQFGEEG--VEEMEKLMKSFGMAAALVLEDDE 714
K L + ++ N+F EE V+E+ ++ + G L+D E
Sbjct: 298 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 343
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 65.8 bits (158), Expect = 1e-11
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKL 677
L +L L DC + + SS+A L N +L +++L+ N + G L LV++++ L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 678 KQINVSENQFGEEGVEEMEKLMKS 701
+Q+ + + + EE + ++ L K
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKD 452
Score = 63.5 bits (152), Expect = 7e-11
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 2/138 (1%)
Query: 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLNDNTI 603
++V + + L +++ N + G+ L + LR L L D +
Sbjct: 322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 381
Query: 604 TYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEISVQ 662
+ L L SL L+L + L AG + + + LE + L S +
Sbjct: 382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 441
Query: 663 GGLDLVKAMKNKTKLKQI 680
L K+K L+ I
Sbjct: 442 MEDRLQALEKDKPSLRVI 459
Score = 62.3 bits (149), Expect = 1e-10
Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 592 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 651
+++ L++ ++ L L L ++ L DC L A I+ L N L +
Sbjct: 3 DIQSLDIQCEELSDARWAEL---LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59
Query: 652 VNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQF 687
+NL NE+ G +++ ++ K++++++
Sbjct: 60 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
Score = 59.2 bits (141), Expect = 1e-09
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRH 595
L+V + + LAA +L +++ N + GI L ++ + L
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 596 LNLNDNTITYKGAIPLGQALSKLPSLAIL 624
L L D + + L PSL ++
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 58.1 bits (138), Expect = 3e-09
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 565 LERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624
++ +++ + L + + + L+D +T + AL P+LA L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 625 NLGDCLLKSAGASSIAKYL-TDNTTLEDVNL 654
NL L G + + L T + ++ ++L
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91
Score = 56.9 bits (135), Expect = 6e-09
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 604
L + L + ++ + + + G+ +S A N L LNL N +
Sbjct: 12 EELSDARWAELLPLLQQCQVVR---LDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68
Query: 605 YKGAIPLGQAL-SKLPSLAILNLGDC 629
G + Q L + + L+L +C
Sbjct: 69 DVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 50.4 bits (118), Expect = 7e-07
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
L L L+D LA L + +L EL L+NN LG G L +++
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLA--NHSLRELDLSNNCLGDAGILQLVESVRQ----- 423
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 565
L+ + E L A+ K +L
Sbjct: 424 ----PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456
Score = 48.8 bits (114), Expect = 2e-06
Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 624 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 683
L++ L A + + L + L ++ D+ A++ L ++N+
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVV---RLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 684 ENQFGEEGVEEMEKLMKS 701
N+ G+ GV + + +++
Sbjct: 64 SNELGDVGVHCVLQGLQT 81
Score = 48.4 bits (113), Expect = 3e-06
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 15/96 (15%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
+ LD+ L LL+ + ++L++ GL CK +S AL
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQ-----CQVVRLDDCGLTEARCKDISSALRVNP--- 55
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKT 564
AL N L + G + +
Sbjct: 56 -------ALAELNLRSNELGDVGVHCVLQGLQTPSC 84
Score = 48.4 bits (113), Expect = 3e-06
Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 36/116 (31%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQA 465
L L L + ++ ++A L +
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHS-------------------------------- 398
Query: 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 521
L ELDLS+N G G+ L + +R C LE+L L + L
Sbjct: 399 ---LRELDLSNNCLGDAGILQLVESVRQPGC-LLEQLVLYDIYWSEEMEDRLQALE 450
Score = 47.7 bits (111), Expect = 6e-06
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQA 465
+ SL+++ L + L + + + L T +I ALR
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVR--LDDCGLTEARCKDISSALRVNPA----- 56
Query: 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
L EL+L N G +GV + L++ C +++L L N
Sbjct: 57 ---LAELNLRSNELGDVGVHCVLQGLQTPSC-KIQKLSLQNCC 95
Score = 45.0 bits (104), Expect = 3e-05
Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 14/104 (13%)
Query: 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAV 558
++ L + L L L C +V L K +++
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQC-------------QVVRLDDCGLTEARCKDISSA 50
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDN 601
+ L + + N + VG+ + + ++ L+L +
Sbjct: 51 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 43.4 bits (100), Expect = 1e-04
Identities = 9/56 (16%), Positives = 26/56 (46%)
Query: 646 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 701
+ L + L ++S L + L+++++S N G+ G+ ++ + ++
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Score = 32.6 bits (72), Expect = 0.25
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 11/77 (14%)
Query: 354 NDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG 413
+ +++L L+ + GL + K I A+ L LNL
Sbjct: 16 DARWAELLPLLQQC--------QVVRLDDCGL---TEARCKDISSALRVNPALAELNLRS 64
Query: 414 NTLGVNAAKAIADALSK 430
N LG + L
Sbjct: 65 NELGDVGVHCVLQGLQT 81
Score = 31.9 bits (70), Expect = 0.48
Identities = 14/103 (13%), Positives = 26/103 (25%), Gaps = 34/103 (33%)
Query: 391 EDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTE 450
+ + L L+L N LG + ++
Sbjct: 384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES----------------------- 420
Query: 451 IPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRS 493
++Q G L +L L D + + L L +
Sbjct: 421 -----------VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKD 452
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 167
Score = 56.9 bits (136), Expect = 7e-10
Identities = 21/170 (12%), Positives = 58/170 (34%), Gaps = 17/170 (10%)
Query: 484 VEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 542
VE + LR L+E+ +NN + + L +A + + F
Sbjct: 3 VESCINRLREDDT-DLKEVNINNMKRVSKERIRSLIEAACNSKHI----------EKFSL 51
Query: 543 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 602
+ + A+ L + + +L + + N + + L + +++ ++
Sbjct: 52 ANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 111
Query: 603 ITY---KGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 649
+ + + + A+ + SL + + + +++ L N
Sbjct: 112 QSVLGNQVEMDMMMAIEENESLLRVGISFASM--EARHRVSEALERNYER 159
Score = 38.8 bits (89), Expect = 0.001
Identities = 20/152 (13%), Positives = 52/152 (34%), Gaps = 16/152 (10%)
Query: 462 LQQAGARLVELDLSD-NAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKA 520
L++ L E+++++ + L + +S E+ L N + + + L +
Sbjct: 10 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHI--EKFSLANTAISDSEARGLIEL 67
Query: 521 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG- 579
+ +V N L E L +++ + +G
Sbjct: 68 IETSPSL----------RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 117
Query: 580 --ITALSDAFEENKNLRHLNLNDNTITYKGAI 609
+ A EEN++L + ++ ++ + +
Sbjct: 118 QVEMDMMMAIEENESLLRVGISFASMEARHRV 149
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 166
Score = 42.3 bits (98), Expect = 6e-05
Identities = 35/172 (20%), Positives = 60/172 (34%), Gaps = 16/172 (9%)
Query: 481 PIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLSKALHDCYESSKKEGSPLALKV 539
VE ++++ LEE+ LNN + + K ++AL +K
Sbjct: 2 STDVEETLKRIQNNDP-DLEEVNLNNIMNIPVPTLKACAEALKTN----------TYVKK 50
Query: 540 FIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLN-- 597
F R + A LA + K TL+ + + N I GI AL +A + N +L L
Sbjct: 51 FSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRID 110
Query: 598 LNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 649
+ + + L K +L + + +N L
Sbjct: 111 NQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNNDL 160
Score = 34.2 bits (77), Expect = 0.037
Identities = 15/157 (9%), Positives = 40/157 (25%), Gaps = 13/157 (8%)
Query: 462 LQQAGARLVELDLSDNAFGPIGVEGLADLLRSSC-CFALEELKLNNNGLGITGCKLLSKA 520
+Q L E++L++ I V L + +++ + L++
Sbjct: 12 IQNNDPDLEEVNLNNI--MNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM 69
Query: 521 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI 580
L + L + R++ + +
Sbjct: 70 LKVNNTLKSLN------VESNFISGSGILALVEALQSNTSL--IELRIDNQSQPLGNNVE 121
Query: 581 TALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617
+++ E+N L + + A+
Sbjct: 122 MEIANMLEKNTTLLKFGYHFTQQGPRLRA--SNAMMN 156
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 34.2 bits (77), Expect = 0.082
Identities = 33/167 (19%), Positives = 54/167 (32%), Gaps = 32/167 (19%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKAL----- 521
L +LDL++N +++L S L ELKL N + I+ L+
Sbjct: 242 NLTDLDLANNQ--------ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293
Query: 522 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 581
+ E + L N + + L L+R+ N + V
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFANNKVSDV--- 344
Query: 582 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628
+ N+ L+ N I+ PL L + L L D
Sbjct: 345 ---SSLANLTNINWLSAGHNQIS--DLTPLAN----LTRITQLGLND 382
Score = 31.9 bits (71), Expect = 0.36
Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 20/166 (12%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L EL L+ N IG + L +L L NN + L +
Sbjct: 220 NLDELSLNGNQLKDIGT--------LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 271
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
+ + + L A N NE + LK L + + N I +
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI------SPV 325
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 633
L+ L +N ++ + +L+ L ++ L+ G +
Sbjct: 326 SSLTKLQRLFFANNKVS---DVS---SLANLTNINWLSAGHNQISD 365
Score = 28.0 bits (61), Expect = 6.7
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 560 KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLP 619
L + ++ + GI + D E NL +N ++N +T PL L+KL
Sbjct: 41 TDLDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLT--DITPLKN-LTKLV 91
Query: 620 SL 621
+
Sbjct: 92 DI 93
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 33.0 bits (73), Expect = 0.15
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626
D F L+++ I ++P L L L +
Sbjct: 195 DVFHGASGPVILDISRTRIH---SLPSY-GLENLKKLRARST 232
Score = 28.7 bits (62), Expect = 3.0
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 18/64 (28%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617
VF +++ + I+ + S E K LR + + L K
Sbjct: 196 VFHGASGPVILDISRTRIHSLP----SYGLENLKKLRARSTYN--------------LKK 237
Query: 618 LPSL 621
LP+L
Sbjct: 238 LPTL 241
Score = 27.6 bits (59), Expect = 7.4
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 431 HEHFKRALWKDMFTGRMKTEIP-DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLAD 489
+ + ++ E+P D V LD+S + GL +
Sbjct: 172 AFNGTQLDELNLSDNNNLEELPNDVFHGASG--------PVILDISRTRIHSLPSYGLEN 223
Query: 490 L--LRSSCCFALEEL 502
L LR+ + L++L
Sbjct: 224 LKKLRARSTYNLKKL 238
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 32.8 bits (73), Expect = 0.18
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 583 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625
L + K L LN++ N + G IP G L + A N
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLC--GEIPQGGNLQRFDVSAYAN 300
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 30.4 bits (67), Expect = 0.84
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628
NL ++L +N I+ P L+ +L I+ L +
Sbjct: 189 SPLASLPNLIEVHLKNNQIS--DVSP----LANTSNLFIVTLTN 226
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 29.8 bits (66), Expect = 1.0
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 580 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 633
L E L LNL++N + + + K P+L ILNL LKS
Sbjct: 54 AATLRIIEENIPELLSLNLSNNRLYRLDDMS--SIVQKAPNLKILNLSGNELKS 105
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 28.6 bits (64), Expect = 1.7
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 7 LEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTS 64
+ D+E ++ D+ E+E D E + + +NQ T+
Sbjct: 1 MSDNEDNFDGDDFDDVEEDEGLDDLENAEE----EGQENVEILPSGERPQANQKRITT 54
Score = 28.6 bits (64), Expect = 1.7
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 710 LEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTS 767
+ D+E ++ D+ E+E D E + + +NQ T+
Sbjct: 1 MSDNEDNFDGDDFDDVEEDEGLDDLENAEE----EGQENVEILPSGERPQANQKRITT 54
>d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus
thermophilus [TaxId: 274]}
Length = 91
Score = 27.9 bits (62), Expect = 1.8
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 388 DNKEDAKVIVDAINEVKVLVSLNL-EGNTLGVNAAKAIADALSKHEHFK 435
+ K +A+ + + + + + + + E G AK IA+ALS+
Sbjct: 5 ERKAEAERLKEILENLTLTIPVRAGETKIYGSVTAKDIAEALSRQHGVT 53
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 29.2 bits (64), Expect = 1.8
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 586 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626
L++L L+ N I+ + AL+ L +L +L L
Sbjct: 173 PLAGLTKLQNLYLSKNHIS---DLR---ALAGLKNLDVLEL 207
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 27.8 bits (61), Expect = 2.8
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 636
H +T L E+ + HL+L+ N + AL+ L L +L D L++
Sbjct: 7 HKDLTVLC-HLEQLLLVTHLDLSHNRLRAL-----PPALAALRCLEVLQASDNALENVDG 60
Query: 637 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690
+ L+++ L N + ++ + + +L +N+ N +E
Sbjct: 61 V------ANLPRLQELLLCNNRLQ---QSAAIQPLVSCPRLVLLNLQGNSLCQE 105
Score = 26.6 bits (58), Expect = 6.9
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624
L LNL N++ + I + LPS++ +
Sbjct: 84 QPLVSCPRLVLLNLQGNSLCQEEGIQ-ERLAEMLPSVSSI 122
>d1kzqa2 b.6.2.1 (A:132-255) Major surface antigen p30, SAG1
{Toxoplasma gondii [TaxId: 5811]}
Length = 124
Score = 27.5 bits (61), Expect = 3.6
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 13/76 (17%)
Query: 826 KVSSLVPSTTTLQSPSSSLFECTKVLYRELFN------WASNSDKLSTVTNALLVHLGLI 879
K VP ++L C + ++++ W N+ T L +
Sbjct: 38 KDGVKVPQDNNQYCSGTTLTGCNEKSFKDILPKLTENPWQGNASSDKGAT--LTIKKEAF 95
Query: 880 KCEDKSFKINYNLNGC 895
E KS I GC
Sbjct: 96 PAESKSVII-----GC 106
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 28.6 bits (62), Expect = 4.0
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 16/74 (21%)
Query: 587 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 646
+ +L LN+++N + +P + P L L L + + +
Sbjct: 280 CDLPPSLEELNVSNNKLI---ELP-----ALPPRLERLIASFNHL-----AEVPELP--- 323
Query: 647 TTLEDVNLTCNEIS 660
L+ +++ N +
Sbjct: 324 QNLKQLHVEYNPLR 337
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 27.6 bits (60), Expect = 5.3
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 5/48 (10%)
Query: 584 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 631
+ + R L+L I + + L ++ D +
Sbjct: 11 AAQYTNAVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEI 53
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 27.8 bits (60), Expect = 5.7
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 591 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC 629
K+ L+L++N + L L L LNL
Sbjct: 31 KDTTILHLSENLLY---TFSLA-TLMPYTRLTQLNLDRA 65
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 27.6 bits (60), Expect = 6.5
Identities = 11/135 (8%), Positives = 31/135 (22%), Gaps = 22/135 (16%)
Query: 306 LLKLHTIADQEEGWIKVINSMVSVIPIDNPLGPAVIELNHKGRMTDKP--NDDVSDILKK 363
L + + ++ + + S + + R T K + V ++
Sbjct: 128 ATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTN 187
Query: 364 LESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKA 423
LE++ +L + E + +
Sbjct: 188 LETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKE--------------------TLEK 227
Query: 424 IADALSKHEHFKRAL 438
+ + + L
Sbjct: 228 ELNRKVSGKEIQPTL 242
>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 139
Score = 27.0 bits (59), Expect = 8.0
Identities = 8/93 (8%), Positives = 24/93 (25%), Gaps = 8/93 (8%)
Query: 34 DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHSVSQLK------QHSVTDFLAAPSV 87
+ L+H + + + N + S+ + + +
Sbjct: 31 STAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKLDTIDFQYTG 90
Query: 88 SLFNSLGPNCAQLFLDEINSEPEDRYLESMLLA 120
L S+ P ++ ++ +L
Sbjct: 91 HLHKSILIMATGEMFW--TGTPVYKFCQTFILL 121
Score = 27.0 bits (59), Expect = 8.0
Identities = 8/93 (8%), Positives = 24/93 (25%), Gaps = 8/93 (8%)
Query: 737 DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHSVSQLK------QHSVTDFLAAPSV 790
+ L+H + + + N + S+ + + +
Sbjct: 31 STAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKLDTIDFQYTG 90
Query: 791 SLFNSLGPNCAQLFLDEINSEPEDRYLESMLLA 823
L S+ P ++ ++ +L
Sbjct: 91 HLHKSILIMATGEMFW--TGTPVYKFCQTFILL 121
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 27.4 bits (59), Expect = 8.2
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSK 519
R+ +DLS++ + G+ S C L+ L L L L+K
Sbjct: 47 RVQHMDLSNSVIEVSTLHGIL-----SQCSKLQNLSLEGLRLSDPIVNTLAK 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.128 0.355
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,236,479
Number of extensions: 144440
Number of successful extensions: 409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 77
Length of query: 999
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 905
Effective length of database: 1,116,976
Effective search space: 1010863280
Effective search space used: 1010863280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.6 bits)