BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18077
(451 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 111/190 (58%), Gaps = 14/190 (7%)
Query: 156 YSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH--NQICQCPHCSKSF 213
+ +SS++A Q P + K CP+CGK + + H RTH + +CP C KSF
Sbjct: 4 FGSSSSVA---QAALEPGE-KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSF 59
Query: 214 SRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKS 273
S L H RTHTGEKP+KC C K+F+ ++NLRAH +TH+ KP+ C +CGK+F+ +
Sbjct: 60 SDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLA 119
Query: 274 YLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAF 333
+L H+ EKP+KC C K+F+ + NL H +TH+ KP+ C +CGK+F
Sbjct: 120 HLRAHQ--------RTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF 171
Query: 334 ALKSYLYKHE 343
+ + L H+
Sbjct: 172 SRRDALNVHQ 181
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 102/178 (57%), Gaps = 13/178 (7%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH--NQIC 204
+ C +CGK +S S +LA H++ H K CP+CGK + + H RTH +
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTH---TGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+CP C KSFS+ L+ H RTHTGEKP+ C C K+F+ ++LRAH +TH+ KP+ C +
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE 138
Query: 265 CGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
CGK+F+ + L+ H+ EKP+KC C K+F+ + L H +TH+ K
Sbjct: 139 CGKSFSREDNLHTHQ--------RTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 102/194 (52%), Gaps = 26/194 (13%)
Query: 228 GEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXX 287
GEKP+ C C K+F+ +L H +TH+ KP+ C +CGK+F+ K L +H+
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ-------- 69
Query: 288 XXXXXEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXX 347
EKP+KC C K+F+ ++NLRAH +TH+ KP+ C +CGK+F+ ++L H+
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 348 XXXXXXXXNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLY 407
++C +CGK +S NL H++ H K CP+CGK +
Sbjct: 130 GEK---------------PYKCPECGKSFSREDNLHTHQRTH---TGEKPYKCPECGKSF 171
Query: 408 VSMPAYSMHLRTHN 421
A ++H RTH
Sbjct: 172 SRRDALNVHQRTHT 185
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 140 NNNNNESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRT 199
+ + ++C +CGK +S +L RH++ H K CP+CGK + H RT
Sbjct: 43 THTGEKPYKCPECGKSFSDKKDLTRHQRTH---TGEKPYKCPECGKSFSQRANLRAHQRT 99
Query: 200 H--NQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKV 257
H + CP C KSFS+ L+ H RTHTGEKP+KC C K+F+ + NL H +TH+
Sbjct: 100 HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE 159
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+ C +CGK+F+ + L H+
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQ 181
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 96/193 (49%), Gaps = 28/193 (14%)
Query: 258 KPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHIQT 317
KP+ C +CGK+F+ +L +H+ EKP+KC C K+F+DK +L H +T
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQ--------RTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Query: 318 HSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXNGHLNKFTTISFQCRDCGKHYS 377
H+ KP+ C +CGK+F+ ++ L H+ + C +CGK +S
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK---------------PYACPECGKSFS 116
Query: 378 TSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH--NQICQCPHCSKSFSR 435
++L H++ H K CP+CGK + H RTH + +CP C KSFSR
Sbjct: 117 QLAHLRAHQRTH---TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSR 173
Query: 436 PWLLQGHIRTHTG 448
L H RTHTG
Sbjct: 174 RDALNVHQRTHTG 186
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 20/158 (12%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXX 352
EKP+ C C K+F+ +L H +TH+ KP+ C +CGK+F+ K L +H+
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK-- 76
Query: 353 XXXNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPA 412
++C +CGK +S +NL H++ H K CP+CGK + +
Sbjct: 77 -------------PYKCPECGKSFSQRANLRAHQRTH---TGEKPYACPECGKSFSQLAH 120
Query: 413 YSMHLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHTG 448
H RTH + +CP C KSFSR L H RTHTG
Sbjct: 121 LRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG 158
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 130 NTKDVDTSTANNNNNESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVS 189
+ KD+ + + ++C +CGK +S +NL H++ H K CP+CGK +
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH---TGEKPYACPECGKSFSQ 117
Query: 190 MPAYSMHLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNL 247
+ H RTH + +CP C KSFSR L H RTHTGEKP+KC C K+F+ + L
Sbjct: 118 LAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDAL 177
Query: 248 RAHIQTHSKVK 258
H +TH+ K
Sbjct: 178 NVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 53/75 (70%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+CP C KSFS+ LQ H RTHTGEKP+KC C K+F+ S+L+ H +TH+ KP+ C +
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 265 CGKAFALKSYLYKHE 279
CGK+F+ +L +H+
Sbjct: 66 CGKSFSRSDHLSRHQ 80
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 8/94 (8%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXX 288
EKP+KC C K+F+ SNL+ H +TH+ KP+ C +CGK+F+ S L KH+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQ--------R 53
Query: 289 XXXXEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
EKP+KC C K+F+ +L H +TH K
Sbjct: 54 THTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 176 KARTCPQCGKLYVSMPAYSMHLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFK 233
K CP+CGK + H RTH + +CP C KSFS+ LQ H RTHTGEKP+K
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 234 CKVCDKAFADKSNLRAHIQTHSKVK 258
C C K+F+ +L H +TH K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 15/98 (15%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXX 352
EKP+KC C K+F+ SNL+ H +TH+ KP+ C +CGK+F+ S L KH+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK-- 59
Query: 353 XXXNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHR 390
++C +CGK +S S +L+RH++ H+
Sbjct: 60 -------------PYKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH--NQIC 204
++C +CGK +S SSNL +H++ H K CP+CGK + H RTH +
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTH---TGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEK 230
+CP C KSFSR L H RTH +K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH--NQIC 424
++C +CGK +S SSNL +H++ H K CP+CGK + H RTH +
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTH---TGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 425 QCPHCSKSFSRPWLLQGHIRTH 446
+CP C KSFSR L H RTH
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 396 KARTCPQCGKLYVSMPAYSMHLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHTG 448
K CP+CGK + H RTH + +CP C KSFS+ LQ H RTHTG
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTG 57
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 133 DVDTSTANNNNNESFQCRDCGKHYSTSSNLARHRQIHR 170
D+ + + ++C +CGK +S S +L+RH++ H+
Sbjct: 47 DLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQ 84
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
C C + FS+ L HIR HTG+KPF+C++C + F+ +++L AHI+TH+ KPF C+
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACD 66
Query: 264 KCGKAFA 270
CG+ FA
Sbjct: 67 ICGRKFA 73
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 38/108 (35%)
Query: 229 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 286
E+P+ C V CD+ F+ K+NL HI+ H+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHT------------------------------- 30
Query: 287 XXXXXXEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFA 334
+KPF+C++C + F+ +++L AHI+TH+ KPF C+ CG+ FA
Sbjct: 31 -----GQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFA 73
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 180 CP--QCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
CP C + + H+R H + QC C ++FS+ L HIRTHTGEKPF C
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACD 66
Query: 236 VCDKAFADKSNLRAHIQTHSKVK 258
+C + FA H + H + K
Sbjct: 67 ICGRKFATLHTRTRHTKIHLRQK 89
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 350
E+P+ C V CD+ F+ K+NL HI+ H+ KPF C C + F+ ++ L
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASL----------- 50
Query: 351 XXXXXNGHLNKFTTIS-FQCRDCGKHYSTSSNLARHRQIHRSPDD 394
N H+ T F C CG+ ++T RH +IH D
Sbjct: 51 -----NAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 133 DVDTSTANNNNNESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPA 192
++DT + + FQCR C +++S ++L H + H K C CG+ + ++
Sbjct: 21 NLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH---TGEKPFACDICGRKFATLHT 77
Query: 193 YSMHLRTH 200
+ H + H
Sbjct: 78 RTRHTKIH 85
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 400 CP--QCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
CP C + + H+R H + QC C ++FS+ L HIRTHTG
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG 59
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
C C + FSR L HIR HTG+KPF+C++C + F+ +L HI+TH+ KPF C+
Sbjct: 7 CPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 264 KCGKAFALKSYLYKH 278
CG+ FA +H
Sbjct: 67 ICGRKFARSDERKRH 81
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 180 CP--QCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
CP C + + + H+R H + QC C ++FSR L HIRTHTGEKPF C
Sbjct: 7 CPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 236 VCDKAFADKSNLRAHIQTHSKVK 258
+C + FA + H + H + K
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 229 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 286
E+P+ C V CD+ F+ + L HI+ H+ KPF C C + F+ +L H
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-------- 53
Query: 287 XXXXXXEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
EKPF C +C + FA + H + H + K
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 258 KPFVC--EKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHI 315
+P+ C E C + F+ + L +H +KPF+C++C + F+ +L HI
Sbjct: 3 RPYACPVESCDRRFSRSAELTRH--------IRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Query: 316 QTHSKVKPFVCEKCGKAFALKSYLYKH 342
+TH+ KPF C+ CG+ FA +H
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRH 81
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 17/104 (16%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 350
E+P+ C V CD+ F+ + L HI+ H+ KPF C C + F+ +L H
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-------- 53
Query: 351 XXXXXNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDD 394
H + F C CG+ ++ S RH +IH D
Sbjct: 54 ----IRTHTGE---KPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 400 CP--QCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
CP C + + + H+R H + QC C ++FSR L HIRTHTG
Sbjct: 7 CPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
C C + FSR L HIR HTG+KPF+C++C + F+ +L HI+TH+ KPF C+
Sbjct: 7 CPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 264 KCGKAFALKSYLYKH 278
CG+ FA +H
Sbjct: 67 ICGRKFARSDERKRH 81
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 180 CP--QCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
CP C + + + H+R H + QC C ++FSR L HIRTHTGEKPF C
Sbjct: 7 CPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 236 VCDKAFADKSNLRAHIQTHSKVK 258
+C + FA + H + H + K
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 229 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 286
E+P+ C V CD+ F+ ++L HI+ H+ KPF C C + F+ +L H
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-------- 53
Query: 287 XXXXXXEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
EKPF C +C + FA + H + H + K
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 258 KPFVC--EKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHI 315
+P+ C E C + F+ + L +H +KPF+C++C + F+ +L HI
Sbjct: 3 RPYACPVESCDRRFSRSADLTRH--------IRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Query: 316 QTHSKVKPFVCEKCGKAFALKSYLYKH 342
+TH+ KPF C+ CG+ FA +H
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRH 81
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 350
E+P+ C V CD+ F+ ++L HI+ H+ KPF C C + F+ +L H
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-------- 53
Query: 351 XXXXXNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIH 389
H + F C CG+ ++ S RH +IH
Sbjct: 54 ----IRTHTGE---KPFACDICGRKFARSDERKRHTKIH 85
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 400 CP--QCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
CP C + + + H+R H + QC C ++FSR L HIRTHTG
Sbjct: 7 CPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
C C + FSR L HIR HTG+KPF+C++C + F+ +L HI+TH+ KPF C+
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 264 KCGKAFALKSYLYKH 278
CG+ FA +H
Sbjct: 67 ICGRKFARSDERKRH 81
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 180 CP--QCGKLYVSMPAYSMHLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
CP C + + + H+R H + QC C ++FSR L HIRTHTGEKPF C
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 236 VCDKAFADKSNLRAHIQTHSKVK 258
+C + FA + H + H + K
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 229 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 286
E+P+ C V CD+ F+ L HI+ H+ KPF C C + F+ +L H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-------- 53
Query: 287 XXXXXXEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
EKPF C +C + FA + H + H + K
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 258 KPFVC--EKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHI 315
+P+ C E C + F+ L +H +KPF+C++C + F+ +L HI
Sbjct: 3 RPYACPVESCDRRFSRSDELTRH--------IRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Query: 316 QTHSKVKPFVCEKCGKAFALKSYLYKH 342
+TH+ KPF C+ CG+ FA +H
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRH 81
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 350
E+P+ C V CD+ F+ L HI+ H+ KPF C C + F+ +L H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-------- 53
Query: 351 XXXXXNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIH 389
H + F C CG+ ++ S RH +IH
Sbjct: 54 ----IRTHTGE---KPFACDICGRKFARSDERKRHTKIH 85
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 400 CP--QCGKLYVSMPAYSMHLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHTG 448
CP C + + + H+R H + QC C ++FSR L HIRTHTG
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
C C + FSR L HIR HTG+KPF+C++C + F+ +L HI+TH+ KPF C+
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 264 KCGKAFALKSYLYKH 278
CG+ FA +H
Sbjct: 66 ICGRKFARSDERKRH 80
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 180 CP--QCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
CP C + + + H+R H + QC C ++FSR L HIRTHTGEKPF C
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 236 VCDKAFADKSNLRAHIQTH 254
+C + FA + H + H
Sbjct: 66 ICGRKFARSDERKRHTKIH 84
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 258 KPFVC--EKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHI 315
+P+ C E C + F+ L +H +KPF+C++C + F+ +L HI
Sbjct: 2 RPYACPVESCDRRFSRSDELTRH--------IRIHTGQKPFQCRICMRNFSRSDHLTTHI 53
Query: 316 QTHSKVKPFVCEKCGKAFALKSYLYKH 342
+TH+ KPF C+ CG+ FA +H
Sbjct: 54 RTHTGEKPFACDICGRKFARSDERKRH 80
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 229 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 286
E+P+ C V CD+ F+ L HI+ H+ KPF C C + F+ +L H
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-------- 52
Query: 287 XXXXXXEKPFKCKVCDKAFADKSNLRAHIQTH 318
EKPF C +C + FA + H + H
Sbjct: 53 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 400 CP--QCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
CP C + + + H+R H + QC C ++FSR L HIRTHTG
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 58
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 48/130 (36%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 350
E+P+ C V CD+ F+ L HI+ H+ KPF
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPF-------------------------- 34
Query: 351 XXXXXNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSM 410
QCR C +++S S +L H + H K C CG+ +
Sbjct: 35 -----------------QCRICMRNFSRSDHLTTHIRTH---TGEKPFACDICGRKFARS 74
Query: 411 PAYSMHLRTH 420
H + H
Sbjct: 75 DERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
C C + FSR L HIR HTG+KPF+C++C + F+ +L HI+TH+ KPF C+
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 264 KCGKAFALKSYLYKH 278
CG+ FA +H
Sbjct: 67 ICGRKFARSDERKRH 81
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 180 CP--QCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
CP C + + + H+R H + QC C ++FSR L HIRTHTGEKPF C
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 236 VCDKAFADKSNLRAHIQTH 254
+C + FA + H + H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 258 KPFVC--EKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHI 315
+P+ C E C + F+ L +H +KPF+C++C + F+ +L HI
Sbjct: 3 RPYACPVESCDRRFSRSDELTRH--------IRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Query: 316 QTHSKVKPFVCEKCGKAFALKSYLYKH 342
+TH+ KPF C+ CG+ FA +H
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRH 81
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 229 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 286
E+P+ C V CD+ F+ L HI+ H+ KPF C C + F+ +L H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-------- 53
Query: 287 XXXXXXEKPFKCKVCDKAFADKSNLRAHIQTH 318
EKPF C +C + FA + H + H
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 400 CP--QCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
CP C + + + H+R H + QC C ++FSR L HIRTHTG
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 48/130 (36%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 350
E+P+ C V CD+ F+ L HI+ H+ KPF
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPF-------------------------- 35
Query: 351 XXXXXNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSM 410
QCR C +++S S +L H + H K C CG+ +
Sbjct: 36 -----------------QCRICMRNFSRSDHLTTHIRTH---TGEKPFACDICGRKFARS 75
Query: 411 PAYSMHLRTH 420
H + H
Sbjct: 76 DERKRHTKIH 85
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
C C + FS+ L HIR HTG+KPF+C++C + F+ + L HI+TH+ KPF C+
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACD 66
Query: 264 KCGKAFA 270
CG+ FA
Sbjct: 67 ICGRKFA 73
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 38/108 (35%)
Query: 229 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 286
E+P+ C V CD+ F+ K+NL HI+ H+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHT------------------------------- 30
Query: 287 XXXXXXEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFA 334
+KPF+C++C + F+ + L HI+TH+ KPF C+ CG+ FA
Sbjct: 31 -----GQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFA 73
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 180 CP--QCGKLYVSMPAYSMHLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
CP C + + H+R H + QC C ++FS+ L HIRTHTGEKPF C
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACD 66
Query: 236 VCDKAFADKSNLRAHIQTHSKVK 258
+C + FA H + H + K
Sbjct: 67 ICGRKFATLHTRDRHTKIHLRQK 89
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 19/105 (18%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 350
E+P+ C V CD+ F+ K+NL HI+ H+ KPF C C + F+ + L
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGL----------- 50
Query: 351 XXXXXNGHLNKFTTIS-FQCRDCGKHYSTSSNLARHRQIHRSPDD 394
N H+ T F C CG+ ++T RH +IH D
Sbjct: 51 -----NQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 133 DVDTSTANNNNNESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPA 192
++DT + + FQCR C +++S + L +H + H K C CG+ + ++
Sbjct: 21 NLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE---KPFACDICGRKFATLHT 77
Query: 193 YSMHLRTH 200
H + H
Sbjct: 78 RDRHTKIH 85
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 400 CP--QCGKLYVSMPAYSMHLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHTG 448
CP C + + H+R H + QC C ++FS+ L HIRTHTG
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
C C + FS+ L HIR HTG+KPF+C++C + F+ +L HI+TH+ KPF C+
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 264 KCGKAFALKSYLYKH 278
CG+ FA +H
Sbjct: 67 ICGRKFARSDERKRH 81
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 180 CP--QCGKLYVSMPAYSMHLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
CP C + + + + H+R H + QC C ++FSR L HIRTHTGEKPF C
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 236 VCDKAFADKSNLRAHIQTHSKVK 258
+C + FA + H + H + K
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 229 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 286
E+P+ C V CD+ F+ +L HI+ H+ KPF C C + F+ +L H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-------- 53
Query: 287 XXXXXXEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
EKPF C +C + FA + H + H + K
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 258 KPFVC--EKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHI 315
+P+ C E C + F+ L +H +KPF+C++C + F+ +L HI
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRH--------IRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Query: 316 QTHSKVKPFVCEKCGKAFALKSYLYKH 342
+TH+ KPF C+ CG+ FA +H
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRH 81
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 17/104 (16%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 350
E+P+ C V CD+ F+ +L HI+ H+ KPF C C + F+ +L H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-------- 53
Query: 351 XXXXXNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDD 394
H + F C CG+ ++ S RH +IH D
Sbjct: 54 ----IRTHTGE---KPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 400 CP--QCGKLYVSMPAYSMHLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHTG 448
CP C + + + + H+R H + QC C ++FSR L HIRTHTG
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 116 FNQSNSFNRKSVICNTKDVDTSTANNNNNESFQCRDCGKHYSTSSNLARHRQIHRSPDDT 175
F+QS S R I + + FQCR C +++S S +L H + H
Sbjct: 16 FSQSGSLTRHIRI------------HTGQKPFQCRICMRNFSRSDHLTTHIRTH---TGE 60
Query: 176 KARTCPQCGKLYVSMPAYSMHLRTH 200
K C CG+ + H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 181 PQCGKLYVSMPAYSMHLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV 236
P C K Y + MH R H C C + FSR L+ H R HTG KPF+CK
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
Query: 237 CDKAFADKSNLRAHIQTHSKVKPFVCE--KCGKAFALKSYLYKHED 280
C + F+ +L+ H +TH+ KPF C C K FA L +H +
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 203 ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC--KVCDKAFADKSNLRAHIQTHSKVKPF 260
+C P C+K + + LQ H R HTGEKP++C K C++ F+ L+ H + H+ VKPF
Sbjct: 8 MCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67
Query: 261 VCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKV--CDKAFADKSNLRAHIQTH 318
C+ C + F+ +L H EKPF C+ C K FA L H H
Sbjct: 68 QCKTCQRKFSRSDHLKTH--------TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 50/125 (40%), Gaps = 33/125 (26%)
Query: 134 VDTSTANNNNNESFQC--RDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMP 191
+ + + + +QC +DC + +S S L RH++ H
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH---------------------- 61
Query: 192 AYSMHLRTHNQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADKSNLRA 249
T + QC C + FSR L+ H RTHTGEKPF C+ C K FA L
Sbjct: 62 -------TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVR 114
Query: 250 HIQTH 254
H H
Sbjct: 115 HHNMH 119
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 367 FQC--RDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQ-- 422
+QC +DC + +S S L RH++ H K C C + + H RTH
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRH---TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
Query: 423 --ICQCPHCSKSFSRPWLLQGHIRTH 446
C+ P C K F+R L H H
Sbjct: 94 PFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 372 CGKHYSTSSNLARHRQIHRSPDDTKARTC--PQCGKLYVSMPAYSMHLRTHNQI--CQCP 427
C K Y S+L H + H K C C + + H R H + QC
Sbjct: 14 CNKRYFKLSHLQMHSRKH---TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCK 70
Query: 428 HCSKSFSRPWLLQGHIRTHTG 448
C + FSR L+ H RTHTG
Sbjct: 71 TCQRKFSRSDHLKTHTRTHTG 91
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
C C + FS L HIR HTG+KPF+C++C + F+ +L HI+TH+ KPF C+
Sbjct: 7 CPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 264 KCGKAFALKSYLYKH 278
CG+ FA +H
Sbjct: 67 ICGRKFARSDERKRH 81
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 229 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 286
E+P+ C V CD+ F+D SNL HI+ H+ KPF C C + F+ +L H
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-------- 53
Query: 287 XXXXXXEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
EKPF C +C + FA + H + H + K
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 29/107 (27%)
Query: 152 CGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSK 211
C + +S SSNL RH +IH T + QC C +
Sbjct: 12 CDRRFSDSSNLTRHIRIH-----------------------------TGQKPFQCRICMR 42
Query: 212 SFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
+FSR L HIRTHTGEKPF C +C + FA + H + H + K
Sbjct: 43 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 350
E+P+ C V CD+ F+D SNL HI+ H+ KPF C C + F+ +L H
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-------- 53
Query: 351 XXXXXNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIH 389
H + F C CG+ ++ S RH +IH
Sbjct: 54 ----IRTHTGE---KPFACDICGRKFARSDERKRHTKIH 85
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 29/77 (37%)
Query: 372 CGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSK 431
C + +S SSNL RH +IH T + QC C +
Sbjct: 12 CDRRFSDSSNLTRHIRIH-----------------------------TGQKPFQCRICMR 42
Query: 432 SFSRPWLLQGHIRTHTG 448
+FSR L HIRTHTG
Sbjct: 43 NFSRSDHLTTHIRTHTG 59
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 203 ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPF 260
IC C ++++ W LQ H+ HTGEKPF CK C+K F +L H TH+ K F
Sbjct: 14 ICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNF 73
Query: 261 VCEK--CGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKV--CDKAFADKSNLRAHIQ 316
C+ C F K+ + KH + + C C KAF + L+ H
Sbjct: 74 TCDSDGCDLRFTTKANMKKHFNRFHNIKICV------YVCHFENCGKAFKKHNQLKVHQF 127
Query: 317 THSKVKPFVC--EKCGKAFALKSYLYKHE 343
+H++ P+ C E C K F+L S L +HE
Sbjct: 128 SHTQQLPYECPHEGCDKRFSLPSRLKRHE 156
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 61/157 (38%), Gaps = 24/157 (15%)
Query: 301 CDKAFADKSNLRAHIQTHSKVKPFVC--EKCGKAFALKSYLYKHEDXXXXXXXXXXXNGH 358
C A+ L+AH+ H+ KPF C E C K F +L +H
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS--------------- 64
Query: 359 LNKFTTISFQCR--DCGKHYSTSSNLARH-RQIHRSPDDTKARTCPQCGKLYVSMPAYSM 415
L +F C C ++T +N+ +H + H CGK + +
Sbjct: 65 LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKV 124
Query: 416 HLRTHNQIC--QCPH--CSKSFSRPWLLQGHIRTHTG 448
H +H Q +CPH C K FS P L+ H + H G
Sbjct: 125 HQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 152 CGKHYSTSSNLARH-RQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQIC--QCPH 208
C ++T +N+ +H + H CGK + +H +H Q +CPH
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 209 --CSKSFSRPWLLQGHIRTHTG 228
C K FS P L+ H + H G
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAG 161
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 286
+G +C C K F K L+ H + H+ KPF C KCGK + K L +HE
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE-----AR 57
Query: 287 XXXXXXEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
E+ F C VC + F + LR H+ +H+ P+ C C + F K L H
Sbjct: 58 NCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQ---THSKVKPFV 261
+CP C K F + L+ H R HTGEKPF+C C K + K NL H + + F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 262 CEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAH-IQTHS 319
C C + F + L H E P+KC C + F K +L++H I+ HS
Sbjct: 69 CSVCQETFRRRMELRLH--------MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 140 NNNNNESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMH--- 196
++ + +C C K + + L H + H K CP+CGK Y H
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNRKH---TGEKPFECPKCGKCYFRKENLLEHEAR 57
Query: 197 --LRTHNQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAH-IQT 253
+ Q+ C C ++F R L+ H+ +HTGE P+KC C + F K +L++H I+
Sbjct: 58 NCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKL 117
Query: 254 HS 255
HS
Sbjct: 118 HS 119
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 297 KCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+C C K F K L+ H + H+ KPF C KCGK + K L +HE
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE 55
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQIC-- 424
F+C CGK Y NL H + + TC C + + +H+ +H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Query: 425 QCPHCSKSFSRPWLLQGH-IRTHTG 448
+C CS+ F + LQ H I+ H+G
Sbjct: 96 KCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 66/148 (44%), Gaps = 39/148 (26%)
Query: 180 CPQ--CGKLYVSMPAYSMHLRTHN-QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV 236
CP C K++ A HL TH ++ C C K+F L+ H HTGEKPF+C
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF 67
Query: 237 --CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEK 294
C K F+ NLR H++ H+ +P+VC
Sbjct: 68 EGCGKRFSLDFNLRTHVRIHTGDRPYVC-------------------------------- 95
Query: 295 PFKCKVCDKAFADKSNLRAHIQTHSKVK 322
PF C+K FA +NL++HI TH+K K
Sbjct: 96 PFD--GCNKKFAQSTNLKSHILTHAKAK 121
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 17/116 (14%)
Query: 235 KVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEK 294
K C K F D S +R H+ TH + VC +CGKAF S L +H+ EK
Sbjct: 11 KGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQ--------LVHTGEK 61
Query: 295 PFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVC--EKCGKAFA----LKSYLYKH 342
PF+C C K F+ NLR H++ H+ +P+VC + C K FA LKS++ H
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 150 RDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQ----ICQ 205
+ C K + +S + +H H + C +CGK +V H H C
Sbjct: 11 KGCTKMFRDNSAMRKHLHTH----GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 66
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTHSKVK 258
C K FS + L+ H+R HTG++P+ C C+K FA +NL++HI TH+K K
Sbjct: 67 FEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 51/126 (40%), Gaps = 23/126 (18%)
Query: 299 KVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXNGH 358
K C K F D S +R H+ TH + VC +CGKAF S L +H+
Sbjct: 11 KGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQ--------------- 54
Query: 359 LNKFTTISFQC--RDCGKHYSTSSNLARHRQIHRSPDDTKARTCP--QCGKLYVSMPAYS 414
L FQC CGK +S NL H +IH + CP C K +
Sbjct: 55 LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH---TGDRPYVCPFDGCNKKFAQSTNLK 111
Query: 415 MHLRTH 420
H+ TH
Sbjct: 112 SHILTH 117
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 369 CRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQ----IC 424
C +CGK + SS L RH+ +H + T CGK + H+R H +C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQC-TFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTGGTN 451
C+K F++ L+ HI TH N
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTHAKAKN 122
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKC 265
C C + F++ + L H RTHT E+P+ C +C KAF + +LR H HSK KPF C++C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 266 GKAFALKSYLYKHE 279
GK F L H+
Sbjct: 80 GKGFCQSRTLAVHK 93
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 258 KPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHIQT 317
K F+C+ CG+ F L HE E+P+ C +C KAF + +LR H
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHE--------RTHTDERPYTCDICHKAFRRQDHLRDHRYI 67
Query: 318 HSKVKPFVCEKCGKAFALKSYLYKHE 343
HSK KPF C++CGK F L H+
Sbjct: 68 HSKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXX 288
+K F CK C + F NL H +TH+ +P+ C+ C KAF + +L H
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR--------Y 66
Query: 289 XXXXEKPFKCKVCDKAFADKSNLRAHIQTHSKV 321
EKPFKC+ C K F L H H +
Sbjct: 67 IHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXX 352
+K F CK C + F NL H +TH+ +P+ C+ C KAF + +L H
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK-- 72
Query: 353 XXXNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIH 389
F+C++CGK + S LA H+ +H
Sbjct: 73 -------------PFKCQECGKGFCQSRTLAVHKTLH 96
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 170 RSPDDTKAR-TCPQCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTH 226
R P TK C CG+ + +H RTH + C C K+F R L+ H H
Sbjct: 9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKV 257
+ EKPFKC+ C K F L H H +
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 363 TTISFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQ 422
T F C+ CG+H++ S NL H + H D + TC C K + HLR H
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTH---TDERPYTCDICHKAFRRQD----HLRDHRY 66
Query: 423 I------CQCPHCSKSFSRPWLLQGHIRTH 446
I +C C K F + L H H
Sbjct: 67 IHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 232 FKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXX 291
F CK+C K+F S L H+ HS +P+ C+ CGK F KS + KH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH--------TFIHT 53
Query: 292 XEKPFKCKVCDKAFADKSNLRAHIQTHS 319
EKP KC+VC KAF+ SNL H + H+
Sbjct: 54 GEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKC 265
C C KSF R L H+ H+ +P+ C+ C K F KS+++ H H+ KP C+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 266 GKAFALKSYLYKH 278
GKAF+ S L H
Sbjct: 64 GKAFSQSSNLITH 76
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 49/110 (44%), Gaps = 29/110 (26%)
Query: 146 SFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQ 205
SF C+ CGK + SS L+ H IH DT+ C CGK
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIH---SDTRPYPCQYCGK-------------------- 37
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
F + ++ H HTGEKP KC+VC KAF+ SNL H + H+
Sbjct: 38 ------RFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 15/94 (15%)
Query: 296 FKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXX 355
F CK+C K+F S L H+ HS +P+ C+ CGK F KS + KH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH--- 58
Query: 356 NGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIH 389
+C+ CGK +S SSNL H + H
Sbjct: 59 ------------KCQVCGKAFSQSSNLITHSRKH 80
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 260 FVCEKCGKAF----ALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHI 315
F C+ CGK+F L ++L H D +P+ C+ C K F KS+++ H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDT------------RPYPCQYCGKRFHQKSDMKKHT 49
Query: 316 QTHSKVKPFVCEKCGKAFALKSYLYKH 342
H+ KP C+ CGKAF+ S L H
Sbjct: 50 FIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 366 SFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMH--LRTHNQI 423
SF C+ CGK + SS L+ H IH DT+ C CGK + H + T +
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIH---SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 424 CQCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+FS+ L H R HTG
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 119 SNSFNRKSVICNTKDVDTSTANNNNNESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKAR 178
SF R S + T +++ + C+ CGK + S++ +H IH K
Sbjct: 8 GKSFKRSSTL------STHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH---TGEKPH 58
Query: 179 TCPQCGKLYVSMPAYSMHLRTHN 201
C CGK + H R H
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKHT 81
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+C C K FSR L+ H+R HTG KP+KCK CD A AD S+L H++ HS +PF C+
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 265 CGKAFALKSYLYKH 278
C A S L H
Sbjct: 70 CPYASRNSSQLTVH 83
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 231 PFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXX 290
P KC+VC K F+ K L+ H++ H+ VKP+ C+ C A A S L KH
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH--------LRIH 59
Query: 291 XXEKPFKCKVCDKAFADKSNLRAHIQTHS 319
E+PFKC++C A + S L H+++H+
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVHLRSHT 88
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 259 PFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHIQTH 318
P CE CGK F+ K L H KP+KCK CD A AD S+L H++ H
Sbjct: 8 PHKCEVCGKCFSRKDKLKTH--------MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Query: 319 SKVKPFVCEKCGKAFALKSYLYKH 342
S +PF C+ C A S L H
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVH 83
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 180 CPQCGKLYVSMPAYSMHLRTHNQI--CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVC 237
C CGK + H+R H + +C C + + L H+R H+ E+PFKC++C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 238 DKAFADKSNLRAHIQTHS 255
A + S L H+++H+
Sbjct: 71 PYASRNSSQLTVHLRSHT 88
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 201 NQIC---QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTHS 255
N +C +CP KSF + L HIR HTGEKPF C C K FA NL+ H +TH+
Sbjct: 57 NHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116
Query: 256 KVKPFVC--EKCGKAFALKSYLYKH 278
KPF C E C + FA S KH
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 180 CPQCGKLYVSMPAYSMHLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
CP+ GK + + H+R H C P C K F+R L+ H RTHTGEKPFKC+
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 236 V--CDKAFADKSNLRAHIQTHSKVK 258
CD+ FA+ S+ + H+ H+ K
Sbjct: 125 FEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 235 KVCDKAFADKSNLRAHIQTHSKVKP----FVC--EKC---GKAFALKSYLYKHEDXXXXX 285
K CD+ F+ L H+ P VC E+C GK+F K L H
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH------- 81
Query: 286 XXXXXXXEKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVC--EKCGKAFALKSYLYK 341
EKPF C C K FA NL+ H +TH+ KPF C E C + FA S K
Sbjct: 82 -IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140
Query: 342 H 342
H
Sbjct: 141 H 141
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 400 CPQCGKLYVSMPAYSMHLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTG 448
CP+ GK + + H+R H C P C K F+R L+ H RTHTG
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG 117
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC--KVCDKAFADKSNLRAHIQTHSKVKPFV 261
C P C+K +++ L+ H+RTHTGEKP+KC + CD FA L H + H+ KPF
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 262 CEKCGKAFALKSYLYKH 278
C C ++F+ +L H
Sbjct: 78 CGVCNRSFSRSDHLALH 94
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 181 PQCGKLYVSMPAYSMHLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV 236
P C K+Y HLRTH C C F+R L H R HTG KPF+C V
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80
Query: 237 CDKAFADKSNLRAHIQTH 254
C+++F+ +L H++ H
Sbjct: 81 CNRSFSRSDHLALHMKRH 98
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 237 CDKAFADKSNLRAHIQTHSKVKPFVC--EKCGKAFALKSYLYKHEDXXXXXXXXXXXXEK 294
C K + S+L+AH++TH+ KP+ C E C FA L +H K
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH--------YRKHTGAK 74
Query: 295 PFKCKVCDKAFADKSNLRAHIQTH 318
PF+C VC+++F+ +L H++ H
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRH 98
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 301 CDKAFADKSNLRAHIQTHSKVKPFVC--EKCGKAFALKSYLYKHEDXXXXXXXXXXXNGH 358
C K + S+L+AH++TH+ KP+ C E C FA L +H
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH---------------- 66
Query: 359 LNKFTTIS-FQCRDCGKHYSTSSNLARHRQIHR 390
K T FQC C + +S S +LA H + H+
Sbjct: 67 YRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 401 PQCGKLYVSMPAYSMHLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTG 448
P C K+Y HLRTH C C F+R L H R HTG
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 198 RTHNQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTHS 255
RT C C K++++ L+ H+RTHTGEKP+ C C FA L H + H+
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Query: 256 KVKPFVCEKCGKAFALKSYLYKH 278
+PF C+KC +AF+ +L H
Sbjct: 63 GHRPFQCQKCDRAFSRSDHLALH 85
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 183 CGKLYVSMPAYSMHLRTHNQI----CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCD 238
CGK Y HLRTH C C F+R L H R HTG +PF+C+ CD
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 239 KAFADKSNLRAHIQTH 254
+AF+ +L H++ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 237 CDKAFADKSNLRAHIQTHSKVKPFVCE--KCGKAFALKSYLYKHEDXXXXXXXXXXXXEK 294
C K + S+L+AH++TH+ KP+ C+ CG FA L +H +
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH--------YRKHTGHR 65
Query: 295 PFKCKVCDKAFADKSNLRAHIQTH 318
PF+C+ CD+AF+ +L H++ H
Sbjct: 66 PFQCQKCDRAFSRSDHLALHMKRH 89
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 403 CGKLYVSMPAYSMHLRTHNQI----CQCPHCSKSFSRPWLLQGHIRTHTG 448
CGK Y HLRTH C C F+R L H R HTG
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 372 CGKHYSTSSNLARHRQIHRSPDDTKARTCPQ--CGKLYVSMPAYSMHLRTH--NQICQCP 427
CGK Y+ SS+L H + H K C CG + + H R H ++ QC
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGE---KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 70
Query: 428 HCSKSFSRPWLLQGHIRTH 446
C ++FSR L H++ H
Sbjct: 71 KCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 198 RTHNQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTHS 255
RT C C K++++ L+ H+RTHTGEKP+ C C FA L H + H+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 256 KVKPFVCEKCGKAFALKSYLYKH 278
+PF C+KC +AF+ +L H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALH 84
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 183 CGKLYVSMPAYSMHLRTHNQI----CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCD 238
CGK Y HLRTH C C F+R L H R HTG +PF+C+ CD
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 239 KAFADKSNLRAHIQTH 254
+AF+ +L H++ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 237 CDKAFADKSNLRAHIQTHSKVKPFVCE--KCGKAFALKSYLYKHEDXXXXXXXXXXXXEK 294
C K + S+L+AH++TH+ KP+ C+ CG FA L +H +
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH--------YRKHTGHR 64
Query: 295 PFKCKVCDKAFADKSNLRAHIQTH 318
PF+C+ CD+AF+ +L H++ H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRH 88
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 403 CGKLYVSMPAYSMHLRTHNQI----CQCPHCSKSFSRPWLLQGHIRTHTG 448
CGK Y HLRTH C C F+R L H R HTG
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 372 CGKHYSTSSNLARHRQIHRSPDDTKARTCPQ--CGKLYVSMPAYSMHLRTH--NQICQCP 427
CGK Y+ SS+L H + H K C CG + + H R H ++ QC
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGE---KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69
Query: 428 HCSKSFSRPWLLQGHIRTH 446
C ++FSR L H++ H
Sbjct: 70 KCDRAFSRSDHLALHMKRH 88
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSK 256
+C +C K F + L H+RTHTGEKP+KC+ C+ A A K++LR H++ H K
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 262 CEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHIQTHSK 320
C CGK F YL H EKP+KC+ C+ A A K++LR H++ H K
Sbjct: 7 CSYCGKFFRSNYYLNIH--------LRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 228 GEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
G +C C K F L H++TH+ KP+ CE C A A K+ L H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 34.7 bits (78), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 297 KCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+C C K F L H++TH+ KP+ CE C A A K+ L H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 394 DTKARTCPQCGKLYVSMPAYSMHLRTH--NQICQCPHCSKSFSRPWLLQGHIRTH 446
+ +R C CGK + S ++HLRTH + +C C + ++ L+ H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C +C K F + L H+RTHTG
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTG 29
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTH--SKVKPFVCE 263
C C K F + L H +H+GEKP+ C VC F K + H+++H S KP++C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 264 KCGKAFALKSYLYKH 278
CGK F+ +L H
Sbjct: 70 SCGKGFSRPDHLNGH 84
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 286
+G C++C K F D +L H +HS KP+ C CG F K + H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH------VR 56
Query: 287 XXXXXXEKPFKCKVCDKAFADKSNLRAHI-QTHS 319
KP+ C+ C K F+ +L HI Q HS
Sbjct: 57 SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 140 NNNNNESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRT 199
++ + C CGK + +L RH+ H K +CP CG + S H+R+
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRHKLSH---SGEKPYSCPVCGLRFKRKDRMSYHVRS 57
Query: 200 HNQ------ICQCPHCSKSFSRPWLLQGHIR-THTG 228
H+ ICQ C K FSRP L GHI+ H+G
Sbjct: 58 HDGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHSG 91
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 369 CRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQ------ 422
C CGK + +L RH+ H K +CP CG + S H+R+H+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSH---SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 423 ICQCPHCSKSFSRPWLLQGHIR-THTG 448
ICQ C K FSRP L GHI+ H+G
Sbjct: 67 ICQS--CGKGFSRPDHLNGHIKQVHSG 91
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 298 CKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXNG 357
C++C K F D +L H +HS KP+ C CG F K + H +G
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH---------VRSHDG 60
Query: 358 HLNKFTTISFQCRDCGKHYSTSSNLARH-RQIHRSP 392
+ K + C+ CGK +S +L H +Q+H P
Sbjct: 61 SVGK----PYICQSCGKGFSRPDHLNGHIKQVHSGP 92
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 203 ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPF 260
IC C ++++ W LQ H+ HTGEKPF CK C+K F +L H TH+ K F
Sbjct: 5 ICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNF 64
Query: 261 VCEK--CGKAFALKSYLYKH 278
C+ C F K+ + KH
Sbjct: 65 TCDSDGCDLRFTTKANMKKH 84
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 22/95 (23%)
Query: 258 KPFVCE--KCGKAF----ALKSYLYKHEDXXXXXXXXXXXXEKPFKCKV--CDKAFADKS 309
K ++C CG A+ L+++L KH EKPF CK C+K F
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTG------------EKPFPCKEEGCEKGFTSLH 49
Query: 310 NLRAHIQTHSKVKPFVCEK--CGKAFALKSYLYKH 342
+L H TH+ K F C+ C F K+ + KH
Sbjct: 50 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 84
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 423 ICQCPHCSKSFSRPWLLQGHIRTHTG 448
IC C ++++ W LQ H+ HTG
Sbjct: 5 ICSFADCGAAYNKNWKLQAHLSKHTG 30
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 195 MHLRTHN----QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC--KVCDKAFADKSNLR 248
+H+R H C C KS+SR L+ H+R+HTGEKP+ C + C KAF++ S+
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Query: 249 AHI-QTHSKVKPFVCE--KCGKAFALKSYLYKH 278
H +THS KP+VC+ C K + S L KH
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 237 CDKAFADKSNLRAHIQT---HSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXE 293
C + F + L HI + H + K FVC G + L+ + ++ E
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQY---MLVVHMRRHTGE 65
Query: 294 KPFKC--KVCDKAFADKSNLRAHIQTHSKVKPFVC--EKCGKAFALKSYLYKHED 344
KP KC + C K+++ NL+ H+++H+ KP++C E C KAF+ S KH++
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 209 CSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKA 268
C KSF+ H+ H G +P+ C VC K F K +L H++ H+ +KP+ C C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 269 FALKSYLYKH 278
F + ++H
Sbjct: 75 FMWRDSFHRH 84
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXX 286
+G+K + C+ C K+F KS H+ H ++P+ C CGK F +K +L H
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI- 63
Query: 287 XXXXXXEKPFKCKVCDKAFADKSNLRAHIQTHSK 320
KP++C +C K F + + H+ + +K
Sbjct: 64 -------KPYECNICAKRFMWRDSFHRHVTSCTK 90
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 264 KCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
+CGK+F KS +H +P+ C VC K F K +L H++ H+ +KP
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGL--------RPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 324 FVCEKCGKAFALKSYLYKH 342
+ C C K F + ++H
Sbjct: 66 YECNICAKRFMWRDSFHRH 84
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 182 QCGKLYVSMPAYSMHLRTHNQI--CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDK 239
QCGK + H+ H + C C K F L GH++ HTG KP++C +C K
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 240 AFADKSNLRAHIQTHSK 256
F + + H+ + +K
Sbjct: 74 RFMWRDSFHRHVTSCTK 90
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 33/55 (60%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
+C C KSFS L H RTHTGEKP+KC C KAF +S+L H + H+ P
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
+ +KC C K+F+ S+L H +TH+ KP+ C++CGKAF +S+L H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ +KC C K+F+ S+L H +TH+ KP+ C++CGKAF +S+L H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 258 KPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHIQT 317
+ + C++CGK+F+ S L KH EKP+KC C KAF +S+L H +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHR--------RTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Query: 318 HSKVKP 323
H+ P
Sbjct: 69 HTGSGP 74
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHN 201
++C +CGK +S SS+L++HR+ H K C +CGK ++ H R H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTH---TGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHN 421
++C +CGK +S SS+L++HR+ H K C +CGK ++ H R H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTH---TGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
C C K+FSR +L H R HTGEKP+KC C KAF+ S L H + H+
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 279
EKP+ C C KAF+ S L H + H+ KP+ C +CGKAF+ S L H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
EKP+ C C KAF+ S L H + H+ KP+ C +CGKAF+ S L H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 258 KPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHIQT 317
KP+ C +CGKAF+ S L +H+ EKP+KC C KAF+ S L H +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTG--------EKPYKCLECGKAFSQNSGLINHQRI 64
Query: 318 HS 319
H+
Sbjct: 65 HT 66
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 15/70 (21%)
Query: 322 KPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXNGHLNKFTTISFQCRDCGKHYSTSSN 381
KP+ C +CGKAF+ S L +H+ ++C +CGK +S +S
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEK---------------PYKCLECGKAFSQNSG 57
Query: 382 LARHRQIHRS 391
L H++IH S
Sbjct: 58 LINHQRIHTS 67
Score = 34.7 bits (78), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH 200
+ C +CGK +S SS L +H+++H K C +CGK + H R H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVH---TGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 34.7 bits (78), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH 420
+ C +CGK +S SS L +H+++H K C +CGK + H R H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVH---TGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 121 SFNRKSVICNTKDVDTSTANNNNNESFQCRDCGKHYSTSSNLARHRQIHRS 171
+F+R S++ + V T + ++C +CGK +S +S L H++IH S
Sbjct: 23 AFSRSSILVQHQRVHT------GEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 396 KARTCPQCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGG 449
K C +CGK + H R H + +C C K+FS+ L H R HT G
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
C C + FSR L HIR HTG+KPF+C++C + F+ +L HI+TH+
Sbjct: 22 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 230 KPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
+P+ C V CD+ F+ L HI+ H+ KPF C C + F+ +L H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 294 KPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+P+ C V CD+ F+ L HI+ H+ KPF C C + F+ +L H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 256 KVKPFVC--EKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRA 313
K++P+ C E C + F+ L +H +KPF+C++C + F+ +L
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRH--------IRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 314 HIQTHS 319
HI+TH+
Sbjct: 68 HIRTHT 73
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 180 CP--QCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHT 227
CP C + + + H+R H + QC C ++FSR L HIRTHT
Sbjct: 22 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 400 CP--QCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHT 447
CP C + + + H+R H + QC C ++FSR L HIRTHT
Sbjct: 22 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHED 280
KPF+C++C + F+ +L HI+TH+ KPF C+ CG+ FA +H D
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHED 344
KPF+C++C + F+ +L HI+TH+ KPF C+ CG+ FA +H D
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAH 250
QC C ++FSR L HIRTHTGEKPF C +C + FA + H
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 257 VKPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAH 314
+KPF C C + F+ +L H EKPF C +C + FA + H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTH--------IRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
QC C ++FSR L HIRTHTG
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTG 28
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 224 RTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVK----PFVCEKCGKAFALKSYLYKHE 279
RTHTGEKP+ C CDK F K L H + + FVC KCGK F ++ + +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 280 D 280
D
Sbjct: 68 D 68
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVK----PFVCEKCGKAFALKSYLYKHED 344
EKP+ C CDK F K L H + + FVC KCGK F ++ + +H D
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 316 QTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXNGHLNKFTTISFQCRDCGKH 375
+TH+ KP+ C C K F K L H H F +F C CGK
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY-----------HDPNFVPAAFVCSKCGKT 56
Query: 376 YSTSSNLARHRQIHRSPDDTKA 397
++ + +ARH PD +
Sbjct: 57 FTRRNTMARHADNCAGPDGVEG 78
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 198 RTHNQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC--KVCDKAFADKSNLRAHIQTH 254
R + IC P C K++ + L+ H RTHTGEKPF C K C++ FA L H +TH
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 210 SKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC--EKCGK 267
S S P + IR+H P C K + S+L+AH +TH+ KPF C + C +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHP----GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCER 57
Query: 268 AFALKSYLYKHE 279
FA L +H
Sbjct: 58 RFARSDELSRHR 69
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 301 CDKAFADKSNLRAHIQTHSKVKPFVC--EKCGKAFALKSYLYKHE 343
C K + S+L+AH +TH+ KPF C + C + FA L +H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR 69
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 243 DKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKC--KV 300
D S +R+HI +H CGK + S+L H EKPF C K
Sbjct: 11 DSSRIRSHICSH--------PGCGKTYFKSSHLKAH--------TRTHTGEKPFSCSWKG 54
Query: 301 CDKAFADKSNLRAHIQTH 318
C++ FA L H +TH
Sbjct: 55 CERRFARSDELSRHRRTH 72
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 401 PQCGKLYVSMPAYSMHLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTH 446
P CGK Y H RTH C C + F+R L H RTH
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 418 RTHNQICQCPHCSKSFSRPWLLQGHIRTHTG 448
R + IC P C K++ + L+ H RTHTG
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTG 44
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
+C C SF L H HTGEKP++C +C F +NL+ H + HS KP
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 258 KPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHIQT 317
KP+ C++C +F K L H+ EKP++C +C F +NL+ H +
Sbjct: 16 KPYKCDRCQASFRYKGNLASHK--------TVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Query: 318 HSKVKP 323
HS KP
Sbjct: 68 HSGEKP 73
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
+KP+KC C +F K NL +H H+ KP+ C CG F + L H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+KP+KC C +F K NL +H H+ KP+ C CG F + L H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 29/88 (32%)
Query: 144 NESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQI 203
++ ++C C + NLA H+ +H T +
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVH-----------------------------TGEKP 45
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C F+RP L+ H R H+GEKP
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 228 GEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXX 287
G + C VC +++ ++LR H HS K + C C K F L Y KHE
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHE-------- 70
Query: 288 XXXXXEKPFKCKVCDKAFADKSNLRAHIQT 317
E+ ++C C K+F + + +HI++
Sbjct: 71 IHHTGERRYQCLACGKSFINYQFMSSHIKS 100
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 296 FKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXX 355
+ C VC +++ ++LR H HS K + C C K F L Y KHE
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHE------------ 70
Query: 356 NGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPD---DTKARTCPQCGKLYVSMPA 412
++ +QC CGK + ++ H + S D D+K C L + A
Sbjct: 71 ---IHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYA 127
Query: 413 Y 413
Y
Sbjct: 128 Y 128
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 179 TCPQCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV 236
C C + YV + + H H+ + C +C K F H HTGE+ ++C
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA 83
Query: 237 CDKAFADKSNLRAHIQT 253
C K+F + + +HI++
Sbjct: 84 CGKSFINYQFMSSHIKS 100
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKC 265
C C +S+ L+ H H+ EK + C+ C+K F H H+ + + C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 266 GKAFALKSYLYKH 278
GK+F ++ H
Sbjct: 85 GKSFINYQFMSSH 97
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 260 FVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHIQTHS 319
++C C +++ + L +H + EK + C+ C+K F H H+
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSW--------EKKYPCRYCEKVFPLAEYRTKHEIHHT 74
Query: 320 KVKPFVCEKCGKAFALKSYLYKH 342
+ + C CGK+F ++ H
Sbjct: 75 GERRYQCLACGKSFINYQFMSSH 97
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQC 206
+ C C + Y ++L RH IH R C + L + +H T + QC
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH-HTGERRYQC 81
Query: 207 PHCSKSFSRPWLLQGHIRTHTGEKP 231
C KSF + HI++ + P
Sbjct: 82 LACGKSFINYQFMSSHIKSVHSQDP 106
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 365 ISFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQIC 424
+ + C C + Y ++L RH IH R C + L + +H T +
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH-HTGERRY 79
Query: 425 QCPHCSKSFSRPWLLQGHIRT 445
QC C KSF + HI++
Sbjct: 80 QCLACGKSFINYQFMSSHIKS 100
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 232 FKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
F C+VC +AFA + +L+ H ++H+ KP+ C C +AF + L +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 296 FKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
F C+VC +AFA + +L+ H ++H+ KP+ C C +AF + L +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQ 252
C C+++F+R L+ H R+HT EKP+ C +C++AF + L H Q
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 260 FVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHIQ 316
FVCE C +AFA + +L +H EKP+ C +C++AF + L H Q
Sbjct: 3 FVCEVCTRAFARQEHLKRH--------YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
+GEKPF C C+KAF+ KS L H QTH++ KP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKPF C C+KAF+ KS L H QTH++ KP
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 255 SKVKPFVCEKCGKAFALKSYLYKHE 279
S KPF C C KAF+ KSYL H+
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQ 30
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 319 SKVKPFVCEKCGKAFALKSYLYKHE 343
S KPF C C KAF+ KSYL H+
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQ 30
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQT--HSK 256
C C +P +L+ HIRTHT +P+ C C+ +F K NL H+++ HSK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 232 FKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
+ C+ C S L+ HI+TH+ V+P+ C C +F K L KH
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 296 FKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ C+ C S L+ HI+TH+ V+P+ C C +F K L KH
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 18/67 (26%)
Query: 260 FVCEKCG----KAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHI 315
++CE+CG K LK ++ H D +P+ C C+ +F K NL H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDV------------RPYHCTYCNFSFKTKGNLTKHM 49
Query: 316 QT--HSK 320
++ HSK
Sbjct: 50 KSKAHSK 56
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH 200
F C CGK Y +S L+RHR+ H + R+CP+CGK + + HL+ H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLG---YRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH 420
F C CGK Y +S L+RHR+ H + R+CP+CGK + + HL+ H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLG---YRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
E+PF C C K + D S L H + H +P C +CGK F +S + +H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
E+PF C C K + D S L H + H +P C +CGK F +S + +H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTH 254
C C K++ L H R H G +P C C K F D+S + H++ H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 258 KPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKVCDKAFADKSNLRAHIQT 317
+PF C CGK + S L +H +P C C K F D+S + H++
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGY--------RPRSCPECGKCFRDQSEVNRHLKV 54
Query: 318 H 318
H
Sbjct: 55 H 55
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 224 RTHTGEKPFKCKVCDKAFADKSNLRAHI-QTHSK-VKPFVCEKCGKAFALKSYLYKH 278
RTH+GEKP++C +C F ++ HI Q H++ V F C C A KS L H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHI-QTHSK-VKPFVCEKCGKAFALKSYLYKH 342
EKP++C +C F ++ HI Q H++ V F C C A KS L H
Sbjct: 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP++CKVC KAF K++L H +TH+ KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP++CKVC KAF K++L H +TH+ KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C CSK+F++ L H +THTGEKP
Sbjct: 14 ECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKPF+C C KAF KSNL H +TH+ KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKPF+C C KAF KSNL H +TH+ KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C K+F+ L H RTHTGEKP
Sbjct: 14 ECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 225 THTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
+ T EKPF+C CDK+F +S L +H H+ KP
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKPF+C CDK+F +S L +H H+ KP
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+ C C KAF+ KS L H++THS KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+ C C KAF+ KS L H++THS KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 258 KPFVCEKCGKAFALKSYLYKH 278
KP+ C +CGKAF+ KSYL H
Sbjct: 11 KPYGCSECGKAFSSKSYLIIH 31
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 322 KPFVCEKCGKAFALKSYLYKH 342
KP+ C +CGKAF+ KSYL H
Sbjct: 11 KPYGCSECGKAFSSKSYLIIH 31
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKP 231
C C K+FS L H+RTH+GEKP
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP++C C KAF D+SNL H + H+ KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP++C C KAF D+SNL H + H+ KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+ C +CGKAF +S L+ H+
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQ 32
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP+ C +CGKAF +S L+ H+
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQ 32
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ SNL H++IH
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIH 35
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ SNL H++IH
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIH 35
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
+GEKP+ C C KAF KS L H H+ VKP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+ C C KAF KS L H H+ VKP
Sbjct: 8 EKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 255 SKVKPFVCEKCGKAFALKSYLYKHED 280
S KP+ C +CGKAF KS L H+
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKG 31
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 319 SKVKPFVCEKCGKAFALKSYLYKHED 344
S KP+ C +CGKAF KS L H+
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKG 31
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP++C C KAFA K+NL H + H+ KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP++C C KAFA K+NL H + H+ KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+ C +CGKAFA K+ L +H+
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQ 32
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP+ C +CGKAFA K+ L +H+
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQ 32
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C K+F++ L H R HTGEKP
Sbjct: 14 RCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ +NL +H++IH
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIH 35
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ +NL +H++IH
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIH 35
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
E+P+ C VC KAF D+SNL H + H+ KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
E+P+ C VC KAF D+SNL H + H+ KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
+P++C CGKAF +S L KH+
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQ 32
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
+P++C CGKAF +S L KH+
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQ 32
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP++C +C K+F KS L H Q H+ KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP++C +C K+F KS L H Q H+ KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C KSF++ L H + HTGEKP
Sbjct: 14 ECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
E+PFKC C K F +S+L H++ HS+ K
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
E+PFKC C K F +S+L H++ HS+ K
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 258 KPFVCEKCGKAFALKSYLYKH 278
+PF C +CGK F +S+L H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGH 31
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 322 KPFVCEKCGKAFALKSYLYKH 342
+PF C +CGK F +S+L H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGH 31
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 204 CQCPHCSKSFSRPWLLQGHIR-THTGEKPFKCK--VCDKAFADKSNLRAHIQTHSKVKPF 260
C P C + FS L H + H +K F C C K+F K +L+ H++ HS + +
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 261 VCEKCG 266
+CE G
Sbjct: 70 ICEFSG 75
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 265 CGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCK--VCDKAFADKSNLRAHIQTHSKVK 322
CG+ F+ + YL H+ +K F C C K+F K +L+ H++ HS +
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIH-------QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 323 PFVCEKCG 330
++CE G
Sbjct: 68 DYICEFSG 75
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC C KAF +S+L H THS KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC C KAF +S+L H THS KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKPFKCK C KAF +L +H++ H+ KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKPFKCK C KAF +L +H++ H+ KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C K+F + L H+R HTGEKP
Sbjct: 14 KCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKPFKC +C K+F +S L H H+ KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKPFKC +C K+F +S L H H+ KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+ C C K F+ KS L AH +TH+ KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+ C C K F+ KS L AH +TH+ KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKP 231
C C K+FS+ +L H RTHTGEKP
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+ C +CGK F+ KS L H+
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQ 32
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP+ C +CGK F+ KS L H+
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQ 32
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C C K+FS+ +L H RTHTG
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTG 37
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP++C VC KAF+ + +L H + HS KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP++C VC KAF+ + +L H + HS KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
+GEKP++CK C K+F+ + +L H + H+ P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP++CK C K+F+ + +L H + H+ P
Sbjct: 8 EKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 138 TANNNNNESFQCRDCGKHYSTSSNLARHRQIH 169
++ ++ + +QC++CGK +S +LA H ++H
Sbjct: 2 SSGSSGEKPYQCKECGKSFSQRGSLAVHERLH 33
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+QC++CGK +S +LA H ++H
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLH 33
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
QC C KSFS+ L H R HTG P
Sbjct: 12 QCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 255 SKVKPFVCEKCGKAFALKSYLYKHE 279
S KP+ C++CGK+F+ + L HE
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHE 30
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 319 SKVKPFVCEKCGKAFALKSYLYKHE 343
S KP+ C++CGK+F+ + L HE
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHE 30
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP++C C KAF+ K +L HI+ H+ P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP++C C KAF+ K +L HI+ H+ P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C K+FS+ L HIR HTG P
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 258 KPFVCEKCGKAFALKSYLYKH 278
KP+ C++CGKAF+ K L H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVH 30
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 322 KPFVCEKCGKAFALKSYLYKH 342
KP+ C++CGKAF+ K L H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVH 30
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
KPFKC +C+ A KSNL+AH+ HS K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
KPFKC +C+ A KSNL+AH+ HS K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHS 255
EKP++C C KAF KSNL H +TH+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHT 36
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHS 319
EKP++C C KAF KSNL H +TH+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHT 36
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+CR+CGK ++TS NL RH +IH
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIH 25
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+CR+CGK ++TS NL RH +IH
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIH 25
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 231 PFKCKVCDKAFADKSNLRAHIQTHSKVK 258
P KC+ C K F NL+ H++ HS K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 295 PFKCKVCDKAFADKSNLRAHIQTHSKVK 322
P KC+ C K F NL+ H++ HS K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 206 CPHCSKSFSRPWLLQGHIR-THTGEKPFKCKV 236
C C K FSRP L GHI+ HT E+P KC+V
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 230 KPFKCKVCDKAFADKSNLRAHI-QTHSKVKPFVCE 263
KP+ C+ C K F+ +L HI Q H+ +P C+
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 294 KPFKCKVCDKAFADKSNLRAHI-QTHSKVKPFVCE 327
KP+ C+ C K F+ +L HI Q H+ +P C+
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 258 KPFVCEKCGKAFALKSYLYKHEDXXXXXXXXXXXXEKPFKCKV 300
KP++C+ CGK F+ +L H E+P KC+V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGH-------IKQVHTSERPHKCQV 46
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQT-HSKVK 258
K ++C+ C+K FAD SNL+ HI+T HSK K
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQT-HSKVK 322
K ++C+ C+K FAD SNL+ HI+T HSK K
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC+VC KAF S+L H HS +P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC+VC KAF S+L H HS +P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 258 KPFVCEKCGKAFALKSYLYKH 278
KP+ C+ CGKAF + S+L +H
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQH 31
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 322 KPFVCEKCGKAFALKSYLYKH 342
KP+ C+ CGKAF + S+L +H
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQH 31
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.4 bits (80), Expect = 0.073, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 255 SKVKPFVCEKCGKAFALKSYLYKHE 279
S KP+VC +CGKAF LKS L HE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHE 30
Score = 35.4 bits (80), Expect = 0.073, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 319 SKVKPFVCEKCGKAFALKSYLYKHE 343
S KP+VC +CGKAF LKS L HE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHE 30
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
+G+KP+ C C KAF KS L H + H+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHT 34
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
+GEKP++C C KAF KS L H +TH+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHT 34
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHS 319
EKP++C C KAF KS L H +TH+
Sbjct: 8 EKPYECTDCGKAFGLKSQLIIHQRTHT 34
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 255 SKVKPFVCEKCGKAFALKSYLYKHE 279
S KP+ C CGKAF LKS L H+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQ 30
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 319 SKVKPFVCEKCGKAFALKSYLYKHE 343
S KP+ C CGKAF LKS L H+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQ 30
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKPFKC+ C K F S L +H + H+ KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKPFKC+ C K F S L +H + H+ KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KPF CE+CGK F S L+ H+
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQ 32
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KPF CE+CGK F S L+ H+
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQ 32
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C K F++ L H R HTGEKP
Sbjct: 14 KCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC C K F S+L H + H+ VKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC C K F S+L H + H+ VKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ +S+LA H++IH
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIH 35
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ +S+LA H++IH
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIH 35
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+ C C KAF +SNL H + H+K KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+ C C KAF +SNL H + H+K KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP++C +CGKAF ++S L KH+
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQ 32
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP++C +CGKAF ++S L KH+
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQ 32
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C +CGK ++ SNL +H++IH
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIH 35
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C +CGK ++ SNL +H++IH
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIH 35
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHS 255
EKP+KC C KAF KS L H Q+H+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHT 36
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHS 319
EKP+KC C KAF KS L H Q+H+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHT 36
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+ C CGKAF KS L+ H+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQ 32
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP+ C CGKAF KS L+ H+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQ 32
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.097, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
+G KP+ C C KAF KS L H++TH+ KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.1 bits (74), Expect = 0.31, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
KP+ C C KAF KS L H++TH+ KP
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.3 bits (72), Expect = 0.53, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 255 SKVKPFVCEKCGKAFALKSYLYKH 278
S VKP+ C +CGKAF KSYL H
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIH 29
Score = 32.3 bits (72), Expect = 0.53, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 319 SKVKPFVCEKCGKAFALKSYLYKH 342
S VKP+ C +CGKAF KSYL H
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIH 29
Score = 31.6 bits (70), Expect = 0.99, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKP 231
C C K+F L H+RTHTGEKP
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP++C VC KAF+ ++L H + HS KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP++C VC KAF+ ++L H + HS KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC C KAF SNL H H+ KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC C KAF SNL H H+ KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEK 230
CQC C K+F++ L H+R HTGEK
Sbjct: 3 CQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 424 CQCPHCSKSFSRPWLLQGHIRTHTG 448
CQC C K+F++ L H+R HTG
Sbjct: 3 CQCVMCGKAFTQASSLIAHVRQHTG 27
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
KP +C +C KAF S+L AH++ H+ K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
KP +C +C KAF S+L AH++ H+ K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C K+FSR + L H RTH GEKP
Sbjct: 14 ECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
E P++C C KAF+ K L +H +TH+ KP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
E P++C C KAF+ K L +H +TH+ KP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+FSR + L H RTH G
Sbjct: 14 ECHECGKAFSRKYQLISHQRTHAG 37
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKPFKC+ C K F S +H ++HS KP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKPFKC+ C K F S +H ++HS KP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KPF CE+CGK F S Y H+
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQ 32
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KPF CE+CGK F S Y H+
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQ 32
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+QC +CGK +S +S LARH+++H
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVH 35
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+QC +CGK +S +S LARH+++H
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVH 35
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
QC C K+FS+ L H R HTGEKP
Sbjct: 14 QCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
KP++C C KAF+ S L H + H+ KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
KP++C C KAF+ S L H + H+ KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+ C +CGKAF+ S L +H+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQ 32
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP+ C +CGKAF+ S L +H+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQ 32
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC C KAF+ S L H + H+ KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC C KAF+ S L H + H+ KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK +S +S LARH++IH
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIH 35
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK +S +S LARH++IH
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIH 35
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C K+FS+ L H R HTGEKP
Sbjct: 14 KCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+ C +CGKAF+ S L +H+
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQ 32
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP+ C +CGKAF+ S L +H+
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQ 32
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C +CGK +S SS LA H++IH
Sbjct: 13 FECAECGKSFSISSQLATHQRIH 35
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C +CGK +S SS LA H++IH
Sbjct: 13 FECAECGKSFSISSQLATHQRIH 35
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKPF+C C K+F+ S L H + H+ KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKPF+C C K+F+ S L H + H+ KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C KSFS L H R HTGEKP
Sbjct: 14 ECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KPF C +CGK+F++ S L H+
Sbjct: 11 KPFECAECGKSFSISSQLATHQ 32
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KPF C +CGK+F++ S L H+
Sbjct: 11 KPFECAECGKSFSISSQLATHQ 32
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKPF+C+ C K F S+L +H + H+ KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKPF+C+ C K F S+L +H + H+ KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KPF CE+CGK F S+L+ H+
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQ 32
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KPF CE+CGK F S+L+ H+
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQ 32
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
QC C K F++ L H R HTGEKP
Sbjct: 14 QCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
FQC +CGK ++ +S+L H+++H
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVH 35
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
FQC +CGK ++ +S+L H+++H
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVH 35
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 257 VKPFVCEKCGKAFALKSYLYKH 278
+KP+VC +CGKAF KSYL H
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIH 31
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 321 VKPFVCEKCGKAFALKSYLYKH 342
+KP+VC +CGKAF KSYL H
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIH 31
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHS 255
KP+ C C KAF KS L H +TH+
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHT 36
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHS 319
KP+ C C KAF KS L H +TH+
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHT 36
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEK 230
C HC + F+ P LQ H+R HTGEK
Sbjct: 6 CIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C HC + F+ P LQ H+R HTG
Sbjct: 6 CIHCQRQFADPGALQRHVRIHTG 28
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC C KAF D S+ H + H+ +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC C KAF D S+ H + H+ +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP++CK C KAF+ ++L H + H+ KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP++CK C KAF+ ++L H + H+ KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C K+FS+ L H R HTGEKP
Sbjct: 14 ECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 20/23 (86%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C++CGK +S +++L +H+++H
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVH 35
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 20/23 (86%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C++CGK +S +++L +H+++H
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVH 35
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+ C++CGKAF+ ++L +H+
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQ 32
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP+ C++CGKAF+ ++L +H+
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQ 32
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC VC K+F S+L H + H+ KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC VC K+F S+L H + H+ KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKPFKC C K F+ +S L H + H+ KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKPFKC C K F+ +S L H + H+ KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C K FSR L H + HTGEKP
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
T EKP+KC C KAF +SNL H H+ K
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
EKP+KC C KAF +SNL H H+ K
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 135 DTSTANNNNNESFQCRDCGKHYSTSSNLARHRQIH 169
+S ++ + ++C +CGK + T SNL H+ IH
Sbjct: 1 GSSGSSGTKEKPYKCYECGKAFRTRSNLTTHQVIH 35
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK + T SNL H+ IH
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIH 35
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 255 SKVKPFVCEKCGKAFALKSYLYKHE 279
+K KP+ C +CGKAF +S L H+
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQ 32
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 319 SKVKPFVCEKCGKAFALKSYLYKHE 343
+K KP+ C +CGKAF +S L H+
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQ 32
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP++C C KAF+ +S+L H H+ KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP++C C KAF+ +S+L H H+ KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+ C +CGKAF+++S L H+
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQ 32
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP+ C +CGKAF+++S L H+
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQ 32
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSK 256
EKP+ C VC KAF ++L H++ H++
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSK 320
EKP+ C VC KAF ++L H++ H++
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 258 KPFVCEKCGKAFALKSYLYKH 278
KP+ C CGKAF L ++L +H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQH 31
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 322 KPFVCEKCGKAFALKSYLYKH 342
KP+ C CGKAF L ++L +H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQH 31
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC C K F S+L H + H+ KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC C K F S+L H + H+ KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 203 ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC--KVCDKAFADKSNLRAHIQTHSKV--- 257
+C +C K+F + L+ H +HT + P++C + CDK F+ S L+ H + H+
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 62
Query: 258 KPFVCEKCGKAFAL 271
K C GK + L
Sbjct: 63 KDDSCSFVGKTWTL 76
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 237 CDKAFADKSNLRAHIQTHSKVKPFVC--EKCGKAFALKSYLYKHE 279
C KAF + L+ H +H++ P+ C E C K F+L S L +HE
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 53
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 203 ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC--KVCDKAFADKSNLRAHIQTHS 255
+C +C K+F + L+ H +HT + P++C + CDK F+ S L+ H + H+
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 237 CDKAFADKSNLRAHIQTHSKVKPFVC--EKCGKAFALKSYLYKHE 279
C KAF + L+ H +H++ P+ C E C K F+L S L +HE
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 53
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKPF C C KAF+D L H + H+ KP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKPF C C KAF+D L H + H+ KP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F C DCGK +S L +HR+IH
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIH 35
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F C DCGK +S L +HR+IH
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIH 35
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKP 231
C C K+FS L H R HTGEKP
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+ C+ C KAF S L+ H + H+ KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+ C+ C KAF S L+ H + H+ KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKP 231
C C K+F LQ H R HTGEKP
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+ CE+CGKAF S L +H+
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQ 32
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP+ CE+CGKAF S L +H+
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQ 32
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
+G++PF C++C AF K+N H++ H+
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHS 319
++PF C++C AF K+N H++ H+
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVHT 31
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC C K F S+L H + H+ KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC C K F S+L H + H+ KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 20/23 (86%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ +S+LARHR++H
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVH 35
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 20/23 (86%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ +S+LARHR++H
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVH 35
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 225 THTGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
+ T EKP++C C KAF S L H +THS
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTHS 36
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHS 319
EKP++C C KAF S L H +THS
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHS 36
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+VC+ CGKAF L + L +H+
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQ 32
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP+VC+ CGKAF L + L +H+
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQ 32
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+ C C KAF + L H + H+ KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+ C C KAF + L H + H+ KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKP 231
C +C K+F L H R HTGEKP
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
KP+ C C K F+ KS L H ++H+ VKP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
KP+ C C K F+ KS L H ++H+ VKP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 257 VKPFVCEKCGKAFALKSYLYKHE 279
VKP+ C +C K F+LKS L H+
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQ 32
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 321 VKPFVCEKCGKAFALKSYLYKHE 343
VKP+ C +C K F+LKS L H+
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQ 32
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.7 bits (73), Expect = 0.42, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC+ C F ++LRAH+ H+ P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 32.7 bits (73), Expect = 0.42, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC+ C F ++LRAH+ H+ P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC+ C K + K NL H + H+ +P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC+ C K + K NL H + H+ +P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHS 255
EKP+KC C K+F KS LR H + H+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHT 36
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHS 319
EKP+KC C K+F KS LR H + H+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHT 36
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EK +KC VC K F+ S+L+ H + H+ KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EK +KC VC K F+ S+L+ H + H+ KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C K FS+ LQ H R HTGEKP
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 221 GHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKV 257
G R TG KPF+C CD++F+ +L H + H V
Sbjct: 1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 137 STANNNNNESFQCRDCGKHYSTSSNLARHRQIH 169
ST + + FQC DC + +S S +LA HR+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.56, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+VC CGKAF KS L H+
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQ 30
Score = 32.3 bits (72), Expect = 0.56, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP+VC CGKAF KS L H+
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQ 30
Score = 31.6 bits (70), Expect = 0.88, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKV 257
+GEKP+ C C KAF KS L H H+ V
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 28.9 bits (63), Expect = 5.6, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKV 321
EKP+ C C KAF KS L H H+ V
Sbjct: 8 EKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC C KAF ++L H + H+ +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC C KAF ++L H + H+ +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 225 THTGEKPFKCKVCDKAFADKSNL-RAHIQTHSK-VKPFVCEKCGKAFALKSYLYKH 278
T GE ++CKVC + + SN R ++ +H + VK + C C K F K + H
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 293 EKPFKCKVCDKAFADKSNL-RAHIQTHSK-VKPFVCEKCGKAFALKSYLYKH 342
E ++CKVC + + SN R ++ +H + VK + C C K F K + H
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ +S+LARHR IH
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIH 35
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ +S+LARHR IH
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIH 35
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC C K F S+L H H+ KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC C K F S+L H H+ KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
+GE P++C C KAF K L +H +TH+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHS 319
E P++C C KAF K L +H +TH+
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHA 34
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ +S+LARHR IH
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIH 35
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ +S+LARHR IH
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIH 35
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
+KP+KC C K F S+L H H+ KP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
+KP+KC C K F S+L H H+ KP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
+GEKP+ C C K F+ KS L H + H+ K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 255 SKVKPFVCEKCGKAFALKSYLYKHE 279
S KP+ C +CGK F+ KSYL H+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQ 30
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 319 SKVKPFVCEKCGKAFALKSYLYKHE 343
S KP+ C +CGK F+ KSYL H+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQ 30
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
EKP+ C C K F+ KS L H + H+ K
Sbjct: 8 EKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEK 230
QC C + FSR L+ H RTHTGEK
Sbjct: 4 QCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
KPF+CK C + F+ +L+ H +TH+ K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
KPF+CK C + F+ +L+ H +TH+ K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
QC C + FSR L+ H RTHTG
Sbjct: 4 QCKTCQRKFSRSDHLKTHTRTHTG 27
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C K+F+R L H R HTGEKP
Sbjct: 14 ECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
E+ ++C C KAFA KS L H + H+ KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
E+ ++C C KAFA KS L H + H+ KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EK +KC+ CD F+ S+LR H H KP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EK +KC+ CD F+ S+LR H H KP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+ C C K+F KS+L H + H+ KP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+ C C K+F KS+L H + H+ KP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 258 KPFVCEKCGKAFALKSYLYKH 278
KP++C +CGK+F KS+L +H
Sbjct: 11 KPYICNECGKSFIQKSHLNRH 31
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 322 KPFVCEKCGKAFALKSYLYKH 342
KP++C +CGK+F KS+L +H
Sbjct: 11 KPYICNECGKSFIQKSHLNRH 31
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKPFKC C K++ + +L H + H+ KP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKPFKC C K++ + +L H + H+ KP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C KS+++ L H R HTGEKP
Sbjct: 14 KCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|3TSQ|A Chain A, Crystal Structure Of E. Coli Hypf With Atp And Carbamoyl
Phosphate
pdb|3TTD|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Cpp And
Carbamoyl Phosphate
Length = 658
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 29/117 (24%)
Query: 157 STSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSKSFSRP 216
S S+ A + QI PD A TCP C ++ P R C HC F+
Sbjct: 2 SQSAGGAMNTQI--VPD---AATCPAC-LAEMNTPG---ERRYRYPFINCTHCGPRFT-- 50
Query: 217 WLLQGHIRTHTGEKPFK-------CKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCG 266
IR ++PF C CDK + D + R H Q P C +CG
Sbjct: 51 -----IIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQ------PVACPECG 96
>pdb|3TSP|A Chain A, Crystal Structure Of E. Coli Hypf
pdb|3TSU|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Pnp And
Carbamoyl Phosphate
pdb|3TTC|A Chain A, Crystal Structure Of E. Coli Hypf With Adp And Carbamoyl
Phosphate
pdb|3TTF|A Chain A, Crystal Structure Of E. Coli Hypf With Amp And Carbamoyl
Phosphate
Length = 657
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 29/117 (24%)
Query: 157 STSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSKSFSRP 216
S S+ A + QI PD A TCP C ++ P R C HC F+
Sbjct: 2 SQSAGGAMNTQI--VPD---AATCPAC-LAEMNTPG---ERRYRYPFINCTHCGPRFT-- 50
Query: 217 WLLQGHIRTHTGEKPFK-------CKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCG 266
IR ++PF C CDK + D + R H Q P C +CG
Sbjct: 51 -----IIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQ------PVACPECG 96
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 231 PFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
P+KC C+K+F+ K L H + H++ KP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 295 PFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
P+KC C+K+F+ K L H + H++ KP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 31.6 bits (70), Expect = 0.86, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+VC +CGKAF KS+ HE
Sbjct: 9 KPYVCTECGKAFIRKSHFITHE 30
Score = 31.6 bits (70), Expect = 0.86, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP+VC +CGKAF KS+ HE
Sbjct: 9 KPYVCTECGKAFIRKSHFITHE 30
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
+GEKP+ C C KAF KS+ H + H+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHT 34
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 257 VKPFVCEKCGKAFALKSYLYKHE 279
VKP++C +CGKAF++ S L H+
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQ 32
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 321 VKPFVCEKCGKAFALKSYLYKHE 343
VKP++C +CGKAF++ S L H+
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQ 32
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
KP+ C C KAF+ S+L H H+ KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
KP+ C C KAF+ S+L H H+ KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 203 ICQCPHCSKSFSRPWLLQGHIRTHTGEK 230
+C +C K F+R LQ H RTHTGEK
Sbjct: 4 MCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC C K F S+L H H+ KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC C K F S+L H H+ KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ +S+L RHR IH
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIH 35
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ +S+L RHR IH
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIH 35
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
+GEKP+ C+ C KAF S L H + H+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHT 34
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 255 SKVKPFVCEKCGKAFALKSYLYKH 278
S KP+VC++CGKAF S L H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIH 29
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 319 SKVKPFVCEKCGKAFALKSYLYKH 342
S KP+VC++CGKAF S L H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIH 29
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 138 TANNNNNESFQCRDCGKHYSTSSNLARHRQIH 169
++ ++ + + C++CGK ++ SS L+ HR++H
Sbjct: 2 SSGSSGEKPYVCQECGKAFTQSSCLSIHRRVH 33
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHS 319
EKP+ C+ C KAF S L H + H+
Sbjct: 8 EKPYVCQECGKAFTQSSCLSIHRRVHT 34
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 201 NQIC---QCPHCSKSFSRPWLLQGHIRTHTGEK 230
N +C +CP KSF + L HIR HTGEK
Sbjct: 57 NHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
++P++C C KAF KS+L H ++H+ KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
++P++C C KAF KS+L H ++H+ KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSK 256
E PFKC CD+ F ++ L H +TH++
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSK 320
E PFKC CD+ F ++ L H +TH++
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 259 PFVCEKCGKAFALKSYLYKHE 279
PF C KC + F ++YL +HE
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHE 32
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 323 PFVCEKCGKAFALKSYLYKHE 343
PF C KC + F ++YL +HE
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHE 32
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 201 NQICQCPHCSKSFSRPWLLQGHIRTHTGEKP 231
++ C C KSFSR L H R H+GEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKV 257
EKP++C C KAF KS L H +TH+ V
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGV 38
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKV 321
EKP++C C KAF KS L H +TH+ V
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGV 38
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+ C +CGKAF KS L HE
Sbjct: 11 KPYECNECGKAFIWKSLLIVHE 32
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP+ C +CGKAF KS L HE
Sbjct: 11 KPYECNECGKAFIWKSLLIVHE 32
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
E PF C C K F K+NL H + H+ +P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
E PF C C K F K+NL H + H+ +P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP++C C K+F KS L H + H+ P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP++C C K+F KS L H + H+ P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C K+F+R L H + HTGEKP
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
K F+C C KAF KS L H + H+ KP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
K F+C C KAF KS L H + H+ KP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C +CGK ++ S L+ H++IH
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIH 35
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C +CGK ++ S L+ H++IH
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIH 35
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC+ C K F + +L H H+ KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC+ C K F + +L H H+ KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 258 KPFVCEKCGKAFALKSYLYKH 278
KP+ CE+CGK F + LY H
Sbjct: 11 KPYKCEECGKGFICRRDLYTH 31
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 322 KPFVCEKCGKAFALKSYLYKH 342
KP+ CE+CGK F + LY H
Sbjct: 11 KPYKCEECGKGFICRRDLYTH 31
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
KP++C C K+F+ L H TH++ KP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
KP++C C K+F+ L H TH++ KP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
QC C KSFS + L H THT EKP
Sbjct: 14 QCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+ CK C K+F S L H + HS KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+ CK C K+F S L H + HS KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHI 251
CP C +SF+ + H+R + F CK C F L HI
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC C K F S L H + H+ KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC C K F S L H + H+ KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 258 KPFVCEKCGKAFALKSYLYKHE 279
KP+ C +CGK F SYL +H+
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQ 32
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
KP+ C +CGK F SYL +H+
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQ 32
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTH 254
+GEKP+ C VC F K + H+++H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTH 318
EKP+ C VC F K + H+++H
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSH 33
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKPF+CK C F+ +L H+++H + P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKPF+CK C F+ +L H+++H + P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDT 175
FQC++CG ++S S +L +H + H D +
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPS 41
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDT 395
FQC++CG ++S S +L +H + H D +
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPS 41
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQT-HSKVK 258
K ++C+ C+ AD SNL+ HI+T HSK K
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKHSKEK 30
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQT-HSKVK 322
K ++C+ C+ AD SNL+ HI+T HSK K
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKHSKEK 30
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+ C++C F L++H++ H+ P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+ C++C F L++H++ H+ P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 135 DTSTANNNNNESFQCRDCGKHYSTSSNLARHRQIH 169
+S ++ F+C +CGK +S S++L++H+ IH
Sbjct: 1 GSSGSSGTKEHPFKCNECGKTFSHSAHLSKHQLIH 35
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C +CGK +S S++L++H+ IH
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIH 35
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
T E PFKC C K F+ ++L H H+ P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 255 SKVKPFVCEKCGKAFALKSYLYKHE 279
+K PF C +CGK F+ ++L KH+
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQ 32
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 319 SKVKPFVCEKCGKAFALKSYLYKHE 343
+K PF C +CGK F+ ++L KH+
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQ 32
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
E PFKC C K F+ ++L H H+ P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
+KPF+C C K+F K NL H + H+ K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
+KPF+C C K+F K NL H + H+ K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEK 230
+C HC KSF L H R HTGEK
Sbjct: 14 ECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C K FSR L H + HTGEKP
Sbjct: 14 KCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EK +KC C K F+ S L H + H+ KP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EK +KC C K F+ S L H + H+ KP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK +S +S L++H++IH
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIH 35
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK +S +S L++H++IH
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIH 35
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP+KC C K F S+L H H+ KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP+KC C K F S+L H H+ KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK + +S+LARH+ IH
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIH 35
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK + +S+LARH+ IH
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIH 35
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTH 254
EKP KC C KAF KS L H +TH
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTH 318
EKP KC C KAF KS L H +TH
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTH 35
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQT-HSKVK 258
K ++C+ C+ AD SNL+ HI+T HSK K
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKEK 30
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQT-HSKVK 322
K ++C+ C+ AD SNL+ HI+T HSK K
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKEK 30
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 258 KPFVCEKCGKAFALKSYLYKH 278
KP+VCE+CGK F S L H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 322 KPFVCEKCGKAFALKSYLYKH 342
KP+VCE+CGK F S L H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
+GEKP+ C C + F+D + L H + H+
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQT-HSKVK 258
K ++C+ C+ AD SNL+ HI+T HSK K
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHSKEK 30
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQT-HSKVK 322
K ++C+ C+ AD SNL+ HI+T HSK K
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHSKEK 30
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
KP+KC C A A K+NL H++ H+ K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
KP+KC C A A K+NL H++ H+ K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|1NCS|A Chain A, Nmr Study Of Swi5 Zinc Finger Domain 1
Length = 47
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 218 LLQGHIRTHTGEKP---FKCKV--CDKAFADKSNLRAHIQTH 254
L +G I + E P F+C C K F + N+R+HIQTH
Sbjct: 2 LPRGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHIQTH 318
+K F+C C K F + N+R+HIQTH
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
+G+KP C C K F S L H + HS KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 255 SKVKPFVCEKCGKAFALKSYLYKHE 279
S KP VC +CGK F S L KH+
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQ 30
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 319 SKVKPFVCEKCGKAFALKSYLYKHE 343
S KP VC +CGK F S L KH+
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQ 30
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 202 QICQCPHCSKSFSRPWLLQGHIRTHTGEKP 231
++ +C C K+F++ L H R HTGEKP
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
+K FKC C K F S+L H + H+ KP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
+K FKC C K F S+L H + H+ KP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
E+ ++C C KAF KS L H + H KP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
E+ ++C C KAF KS L H + H KP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRS 171
++C +CGK + S L+ H++IHR
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRG 37
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRS 391
++C +CGK + S L+ H++IHR
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRG 37
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 148 QCRDCGKHYSTSSNLARHRQIH 169
+C DCGK + +SN +HR+IH
Sbjct: 14 RCSDCGKFFLQASNFIQHRRIH 35
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 368 QCRDCGKHYSTSSNLARHRQIH 389
+C DCGK + +SN +HR+IH
Sbjct: 14 RCSDCGKFFLQASNFIQHRRIH 35
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 201 NQICQCPHCSKSFSRPWLLQGHIRTHTGEK 230
+I C +C+K F LQ H+R HT EK
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
K F C+ C+K F K +L+AH++ H+ K
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
K F C+ C+K F K +L+AH++ H+ K
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQT-HSKVK 258
K ++C+ C+ AD SNL+ HI+T HSK K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQT-HSKVK 322
K ++C+ C+ AD SNL+ HI+T HSK K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 148 QCRDCGKHYSTSSNLARHRQIH 169
+CR+CGK +S +S L H++IH
Sbjct: 14 ECRECGKSFSFNSQLIVHQRIH 35
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 368 QCRDCGKHYSTSSNLARHRQIH 389
+CR+CGK +S +S L H++IH
Sbjct: 14 ECRECGKSFSFNSQLIVHQRIH 35
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
EKP +C+ C K+F+ S L H + H+ P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
EKP +C+ C K+F+ S L H + H+ P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTH 254
EKP+KC+ C K + + NL H + H
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTH 318
EKP+KC+ C K + + NL H + H
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C DCGK Y+ NL H+++H
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVH 35
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C DCGK Y+ NL H+++H
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVH 35
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
KP++C C ++F+D ++ H++TH K
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
KP++C C ++F+D ++ H++TH K
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKV 257
TG KPF+C CD +F+ +L H + H V
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRHMLV 33
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEK 230
C C+++F+R L+ H R+HT EK
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
E+P KC C K+F ++L H + H+ KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 323
E+P KC C K+F ++L H + H+ KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHS 255
E P++C C K F+ K L +H +THS
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHS 36
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHS 319
E P++C C K F+ K L +H +THS
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHS 36
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEK 230
C C+++F+R L+ H R+HT EK
Sbjct: 5 CEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 232 FKCKVCDKAFADKSNLRAHIQTHSKVK 258
F C+VC +AFA + +L+ H ++H+ K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 296 FKCKVCDKAFADKSNLRAHIQTHSKVK 322
F C+VC +AFA + +L+ H ++H+ K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,834,560
Number of Sequences: 62578
Number of extensions: 410586
Number of successful extensions: 2846
Number of sequences better than 100.0: 195
Number of HSP's better than 100.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 1569
length of query: 451
length of database: 14,973,337
effective HSP length: 102
effective length of query: 349
effective length of database: 8,590,381
effective search space: 2998042969
effective search space used: 2998042969
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)